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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005299
|accession_numbers=CAGE;DRX008012;DRR008884;DRZ000309;DRZ001694;DRZ011659;DRZ013044
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115,DOID:4235
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115,DOID:4235
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.46!27.53!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.45!35.17!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.44!35.51!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.41!24.81!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.34!105.01!CREB3L1;;chr12:80085061..80085119,-!p6@PAWR!1.34!33.31!PAWR;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.05!EBF2;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.41!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.29!18.69!HOXC8;;chr1:170633058..170633084,+!p5@PRRX1!1.28!18.01!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!1.25!16.65!LHX9;;chr10:28034739..28034756,-!p1@MKX!1.25!16.65!MKX;;chr5:72744445..72744466,-!p2@FOXD1!1.24!27.36!FOXD1;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.35!GATA6;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.14!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.14!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.14!21.41!CREB3L1;;chr19:47523058..47523114,+!p1@NPAS1!1.14!12.91!NPAS1;;chr12:52445218..52445237,+!p1@NR4A1!1.10!146.82!NR4A1;;chr5:72744594..72744609,-!p1@FOXD1!1.08!51.15!FOXD1;;chr5:134369905..134369972,-!p1@PITX1!1.08!16.82!PITX1;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.54!PRRX1;;chr12:54402790..54402805,+!p2@HOXC8!1.05!10.20!HOXC8;;chr14:62162285..62162296,+!p3@HIF1A!1.04!52.34!HIF1A;;chr7:44143925..44143970,+!p1@AEBP1!1.03!217.85!AEBP1;;chr5:139492456..139492489,+!p7@PURA!1.03!9.69!PURA;;chr17:38256799..38256815,-!p3@NR1D1!1.02!17.50!NR1D1;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.52!HOXC9;;chr8:67525443..67525459,-!p2@MYBL1!1.01!13.76!MYBL1;;chr12:54379029..54379057,+!p2@HOXC10!1.01!9.18!HOXC10;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.79!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!1.00!15.97!DRAP1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!78.68!PPP1R13L;;chr1:23885981..23886002,-!p1@ID3!0.97!1509.63!ID3;;chr3:71630980..71631110,-!p3@FOXP1!0.96!29.23!FOXP1;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.18!TCF4;;chr3:157823517..157823562,-!p1@SHOX2!0.96!8.67!SHOX2;;chr12:54378923..54378966,+!p1@HOXC10!0.96!8.16!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!0.96!8.16!HOXA9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.95!7.99!HOXC5;;chr7:1577899..1577943,+!p3@MAFK!0.94!7.65!MAFK;;chr17:1959369..1959388,+!p2@HIC1!0.93!20.39!HIC1;;chr14:62162258..62162269,+!p2@HIF1A!0.92!73.58!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.91!29.06!FOSL1;;chr7:44143978..44143989,+!p2@AEBP1!0.91!13.42!AEBP1;;chr7:137686763..137686784,-!p5@CREB3L2!0.91!12.57!CREB3L2;;chr20:50179368..50179392,-!p2@NFATC2!0.89!8.84!NFATC2;;chr12:80085120..80085156,-!p14@PAWR!0.89!6.80!PAWR;;chr8:49833978..49833996,-!p1@SNAI2!0.88!144.27!SNAI2;;chr20:42543441..42543497,+!p1@TOX2!0.88!31.27!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.51!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.88!16.65!ZNF281;;chr17:38256822..38256851,-!p1@NR1D1!0.87!53.70!NR1D1;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.14!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.86!660.00!EPAS1;;chr7:15726243..15726293,-!p2@MEOX2!0.86!6.29!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.29!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.12!HOXA11;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.19!TBX3;;chr8:106330656..106330684,+!p1@ZFPM2!0.84!16.48!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.14!FOXD1;;chr6:19837592..19837621,+!p1@ID4!0.83!37.72!ID4;;chr12:124873852..124873881,-!p3@NCOR2!0.83!37.04!NCOR2;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.78!HOXA11;;chr2:176994408..176994492,+!p1@HOXD8!0.83!5.78!HOXD8;;chr10:63809106..63809127,+!p1@ARID5B!0.82!80.89!ARID5B;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.33!GATA6;;chr7:15726296..15726315,-!p1@MEOX2!0.82!5.61!MEOX2;;chr12:54380404..54380433,+!p3@HOXC10!0.82!5.61!HOXC10;;chr19:16435625..16435682,+!p1@KLF2!0.81!191.34!KLF2;;chr12:53614115..53614154,-!p1@RARG!0.81!31.10!RARG;;chr2:121493492..121493537,+!p2@GLI2!0.81!9.52!GLI2;;chr11:12696071..12696086,+!p3@TEAD1!0.81!7.31!TEAD1;;chr12:54447637..54447659,+!p4@HOXC4!0.81!5.44!HOXC4;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.44!HOXA9;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.44!KDM5D;;chr2:172967242..172967265,-!p2@DLX2!0.80!5.27!DLX2;;chr5:134369879..134369898,-!p2@PITX1!0.80!5.27!PITX1;;chr5:72744336..72744359,-!p5@FOXD1!0.80!5.27!FOXD1;;chr12:54394309..54394336,+!p2@HOXC9!0.80!5.27!HOXC9;;chr2:121493425..121493474,+!p1@GLI2!0.79!11.89!GLI2;;chr20:42543506..42543549,+!p2@TOX2!0.78!12.74!TOX2;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.65!SATB2;;chr12:54380036..54380091,+!p4@HOXC10!0.77!4.93!HOXC10;;chr6:85473156..85473210,-!p2@TBX18!0.76!5.95!TBX18;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.76!ZFY;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.24!DRAP1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.59!PRRX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.74!58.79!PLAGL1;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.27!BNC1;;chr19:50432453..50432468,+!p1@ATF5!0.73!274.60!ATF5;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.29!TWIST2;;chr12:274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|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.46!27.53!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.45!35.17!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.44!35.51!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.41!24.81!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.34!105.01!CREB3L1;;chr12:80085061..80085119,-!p6@PAWR!1.34!33.31!PAWR;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.05!EBF2;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.41!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.29!18.69!HOXC8;;chr1:170633058..170633084,+!p5@PRRX1!1.28!18.01!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!1.25!16.65!LHX9;;chr10:28034739..28034756,-!p1@MKX!1.25!16.65!MKX;;chr5:72744445..72744466,-!p2@FOXD1!1.24!27.36!FOXD1;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.35!GATA6;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.14!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.14!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.14!21.41!CREB3L1;;chr19:47523058..47523114,+!p1@NPAS1!1.14!12.91!NPAS1;;chr12:52445218..52445237,+!p1@NR4A1!1.10!146.82!NR4A1;;chr5:72744594..72744609,-!p1@FOXD1!1.08!51.15!FOXD1;;chr5:134369905..134369972,-!p1@PITX1!1.08!16.82!PITX1;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.54!PRRX1;;chr12:54402790..54402805,+!p2@HOXC8!1.05!10.20!HOXC8;;chr14:62162285..62162296,+!p3@HIF1A!1.04!52.34!HIF1A;;chr7:44143925..44143970,+!p1@AEBP1!1.03!217.85!AEBP1;;chr5:139492456..139492489,+!p7@PURA!1.03!9.69!PURA;;chr17:38256799..38256815,-!p3@NR1D1!1.02!17.50!NR1D1;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.52!HOXC9;;chr8:67525443..67525459,-!p2@MYBL1!1.01!13.76!MYBL1;;chr12:54379029..54379057,+!p2@HOXC10!1.01!9.18!HOXC10;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.79!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!1.00!15.97!DRAP1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!78.68!PPP1R13L;;chr1:23885981..23886002,-!p1@ID3!0.97!1509.63!ID3;;chr3:71630980..71631110,-!p3@FOXP1!0.96!29.23!FOXP1;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.18!TCF4;;chr3:157823517..157823562,-!p1@SHOX2!0.96!8.67!SHOX2;;chr12:54378923..54378966,+!p1@HOXC10!0.96!8.16!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!0.96!8.16!HOXA9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.95!7.99!HOXC5;;chr7:1577899..1577943,+!p3@MAFK!0.94!7.65!MAFK;;chr17:1959369..1959388,+!p2@HIC1!0.93!20.39!HIC1;;chr14:62162258..62162269,+!p2@HIF1A!0.92!73.58!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.91!29.06!FOSL1;;chr7:44143978..44143989,+!p2@AEBP1!0.91!13.42!AEBP1;;chr7:137686763..137686784,-!p5@CREB3L2!0.91!12.57!CREB3L2;;chr20:50179368..50179392,-!p2@NFATC2!0.89!8.84!NFATC2;;chr12:80085120..80085156,-!p14@PAWR!0.89!6.80!PAWR;;chr8:49833978..49833996,-!p1@SNAI2!0.88!144.27!SNAI2;;chr20:42543441..42543497,+!p1@TOX2!0.88!31.27!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.51!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.88!16.65!ZNF281;;chr17:38256822..38256851,-!p1@NR1D1!0.87!53.70!NR1D1;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.14!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.86!660.00!EPAS1;;chr7:15726243..15726293,-!p2@MEOX2!0.86!6.29!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.29!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.12!HOXA11;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.19!TBX3;;chr8:106330656..106330684,+!p1@ZFPM2!0.84!16.48!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.14!FOXD1;;chr6:19837592..19837621,+!p1@ID4!0.83!37.72!ID4;;chr12:124873852..124873881,-!p3@NCOR2!0.83!37.04!NCOR2;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.78!HOXA11;;chr2:176994408..176994492,+!p1@HOXD8!0.83!5.78!HOXD8;;chr10:63809106..63809127,+!p1@ARID5B!0.82!80.89!ARID5B;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.33!GATA6;;chr7:15726296..15726315,-!p1@MEOX2!0.82!5.61!MEOX2;;chr12:54380404..54380433,+!p3@HOXC10!0.82!5.61!HOXC10;;chr19:16435625..16435682,+!p1@KLF2!0.81!191.34!KLF2;;chr12:53614115..53614154,-!p1@RARG!0.81!31.10!RARG;;chr2:121493492..121493537,+!p2@GLI2!0.81!9.52!GLI2;;chr11:12696071..12696086,+!p3@TEAD1!0.81!7.31!TEAD1;;chr12:54447637..54447659,+!p4@HOXC4!0.81!5.44!HOXC4;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.44!HOXA9;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.44!KDM5D;;chr2:172967242..172967265,-!p2@DLX2!0.80!5.27!DLX2;;chr5:134369879..134369898,-!p2@PITX1!0.80!5.27!PITX1;;chr5:72744336..72744359,-!p5@FOXD1!0.80!5.27!FOXD1;;chr12:54394309..54394336,+!p2@HOXC9!0.80!5.27!HOXC9;;chr2:121493425..121493474,+!p1@GLI2!0.79!11.89!GLI2;;chr20:42543506..42543549,+!p2@TOX2!0.78!12.74!TOX2;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.65!SATB2;;chr12:54380036..54380091,+!p4@HOXC10!0.77!4.93!HOXC10;;chr6:85473156..85473210,-!p2@TBX18!0.76!5.95!TBX18;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.76!ZFY;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.24!DRAP1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.59!PRRX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.74!58.79!PLAGL1;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.27!BNC1;;chr19:50432453..50432468,+!p1@ATF5!0.73!274.60!ATF5;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.29!TWIST2;;chr12:274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Line 36: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
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|name=spindle cell sarcoma cell line:Hs 132.T
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|namespace=FANTOM5
Line 44: Line 59:
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Line 59: Line 77:
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|sample_cell_line=Hs 132.T
Line 80: Line 99:
|top_motifs=HMGA1,2:1.79967016529;HBP1_HMGB_SSRP1_UBTF:1.61277082184;EVI1:1.51995185447;XBP1:1.49596590549;HIF1A:1.48200037787;FOXL1:1.43272513805;GZF1:1.3948627295;GLI1..3:1.36481632737;UFEwm:1.34193174869;HES1:1.33566145485;GCM1,2:1.32656452221;TFAP2B:1.1474062511;TFAP4:1.12538638581;HOX{A5,B5}:1.11858512404;MAFB:1.09923642633;HOX{A6,A7,B6,B7}:1.09222925709;NKX2-2,8:1.06775790342;TEAD1:1.05284664421;KLF4:1.04893015566;TFDP1:1.04037884392;XCPE1{core}:1.01825535816;MTE{core}:1.00165246647;TFAP2{A,C}:0.977592009139;TAL1_TCF{3,4,12}:0.975245784358;SRF:0.956292914175;PPARG:0.934755318678;ADNP_IRX_SIX_ZHX:0.916509345138;GFI1B:0.908145582913;MYBL2:0.884383791711;EN1,2:0.868719361183;TLX1..3_NFIC{dimer}:0.85454522994;FOXA2:0.842631619999;AIRE:0.806746703584;HAND1,2:0.804009923741;NR3C1:0.798808233065;GATA4:0.779093247421;POU5F1:0.761689106812;ESR1:0.752321298392;GTF2A1,2:0.748701964938;HSF1,2:0.746467010081;HMX1:0.722658888316;NKX3-1:0.721332481055;PAX3,7:0.720655706173;HOX{A4,D4}:0.714683903197;NR6A1:0.711804651891;SOX17:0.68292043113;IKZF1:0.682564670246;MZF1:0.680458564289;PAX1,9:0.680303719162;NKX3-2:0.674802720923;GTF2I:0.661344064893;TP53:0.650292391322;MAZ:0.646233702574;TFCP2:0.621733744269;NFATC1..3:0.620059603328;HIC1:0.594483449453;RXR{A,B,G}:0.577865952868;ZNF384:0.553103146824;HLF:0.536927290354;PAX8:0.52959292966;POU3F1..4:0.527617350645;PRDM1:0.526288650939;ALX4:0.496493138338;EGR1..3:0.396450179227;MTF1:0.386211078739;TBP:0.375636751466;EBF1:0.370340885119;POU1F1:0.366562704687;ZNF148:0.356910337006;PAX5:0.354243757686;ZBTB6:0.335749288265;RXRA_VDR{dimer}:0.328078142682;CDC5L:0.297633276903;ATF6:0.274382175836;E2F1..5:0.254909556373;SMAD1..7,9:0.252338721022;AHR_ARNT_ARNT2:0.247290100818;AR:0.204428277309;PATZ1:0.203334201939;PITX1..3:0.199480327632;MYB:0.193996291326;NANOG{mouse}:0.192641564368;POU6F1:0.188294205903;TBX4,5:0.17345056509;ZIC1..3:0.16536484196;ZNF238:0.16276935278;ZFP161:0.151274103079;ZBTB16:0.139559272722;TOPORS:0.137421968854;PAX4:0.107189141785;NFIX:0.0989019850761;NFE2L1:0.0804317630823;T:0.0747713014517;BREu{core}:0.0674329367168;LHX3,4:0.0671679889293;SPZ1:0.0478490477049;MED-1{core}:0.0427123977197;BACH2:0.00294063761263;ONECUT1,2:-0.0034820123413;RREB1:-0.0134062024777;STAT2,4,6:-0.0252822944201;MEF2{A,B,C,D}:-0.0301454311602;CREB1:-0.0378980631964;GFI1:-0.0416576873989;LEF1_TCF7_TCF7L1,2:-0.0551939480991;FOS_FOS{B,L1}_JUN{B,D}:-0.0622141230694;NFE2L2:-0.0833983808583;FOSL2:-0.105696977554;STAT5{A,B}:-0.114500535867;HNF1A:-0.118681237202;CEBPA,B_DDIT3:-0.125095815893;JUN:-0.130533450153;DMAP1_NCOR{1,2}_SMARC:-0.136274120578;FOXO1,3,4:-0.141200818318;ZNF143:-0.151251274989;FOXD3:-0.168708099305;NHLH1,2:-0.168922140561;ZNF423:-0.188060553469;REST:-0.212428614122;DBP:-0.219687620223;MYFfamily:-0.229713107815;TEF:-0.248773478883;SP1:-0.264274229037;NKX2-1,4:-0.266941981197;PAX6:-0.271803001588;VSX1,2:-0.280300143597;FOX{F1,F2,J1}:-0.282237726617;PAX2:-0.288233988783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.288880936169;NKX2-3_NKX2-5:-0.307604372436;FOXP3:-0.323964935469;RUNX1..3:-0.326143448864;NR5A1,2:-0.34443563008;NFE2:-0.35011557839;NFKB1_REL_RELA:-0.359747268507;IRF1,2:-0.374016920237;bHLH_family:-0.381360521781;ELK1,4_GABP{A,B1}:-0.411160341428;FOX{I1,J2}:-0.434142811218;ATF4:-0.441394331621;IKZF2:-0.443265336816;CRX:-0.447397737804;FOX{D1,D2}:-0.455274584303;RFX1:-0.455931628389;SPI1:-0.461318308037;SOX5:-0.488275388006;NRF1:-0.502805095005;ARID5B:-0.508514073044;NFIL3:-0.516954180692;ETS1,2:-0.518261490571;OCT4_SOX2{dimer}:-0.52089675596;TGIF1:-0.535850671039;SOX2:-0.538240021211;EP300:-0.543711796272;YY1:-0.573181701029;ATF2:-0.590509402473;ATF5_CREB3:-0.60560347185;PRRX1,2:-0.621695465625;PDX1:-0.6299893037;SPIB:-0.637051539128;FOXN1:-0.637434144656;SOX{8,9,10}:-0.652753568859;FOXP1:-0.668634888315;POU2F1..3:-0.680128943355;ALX1:-0.690472909757;BPTF:-0.693046238468;SNAI1..3:-0.717775688367;CUX2:-0.734313446531;HNF4A_NR2F1,2:-0.781041361923;TLX2:-0.824708691918;NR1H4:-0.841358084952;ELF1,2,4:-0.848746713161;NFY{A,B,C}:-0.865369451842;IRF7:-0.890364101914;SREBF1,2:-0.891482563696;GATA6:-0.902789301738;ZEB1:-0.92536116407;FOXM1:-0.951622582179;FOXQ1:-0.981132612134;STAT1,3:-0.991428147554;ESRRA:-1.04902029593;HOXA9_MEIS1:-1.04992103428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09520300802;NANOG:-1.1035716856;LMO2:-1.11012511303;RORA:-1.11509849107;CDX1,2,4:-1.20521295482;NKX6-1,2:-1.25715381365;RFX2..5_RFXANK_RFXAP:-1.38342211095;PBX1:-1.49420062243;MYOD1:-1.62295729426;RBPJ:-1.76459346217
|top_motifs=HMGA1,2:1.79967016529;HBP1_HMGB_SSRP1_UBTF:1.61277082184;EVI1:1.51995185447;XBP1:1.49596590549;HIF1A:1.48200037787;FOXL1:1.43272513805;GZF1:1.3948627295;GLI1..3:1.36481632737;UFEwm:1.34193174869;HES1:1.33566145485;GCM1,2:1.32656452221;TFAP2B:1.1474062511;TFAP4:1.12538638581;HOX{A5,B5}:1.11858512404;MAFB:1.09923642633;HOX{A6,A7,B6,B7}:1.09222925709;NKX2-2,8:1.06775790342;TEAD1:1.05284664421;KLF4:1.04893015566;TFDP1:1.04037884392;XCPE1{core}:1.01825535816;MTE{core}:1.00165246647;TFAP2{A,C}:0.977592009139;TAL1_TCF{3,4,12}:0.975245784358;SRF:0.956292914175;PPARG:0.934755318678;ADNP_IRX_SIX_ZHX:0.916509345138;GFI1B:0.908145582913;MYBL2:0.884383791711;EN1,2:0.868719361183;TLX1..3_NFIC{dimer}:0.85454522994;FOXA2:0.842631619999;AIRE:0.806746703584;HAND1,2:0.804009923741;NR3C1:0.798808233065;GATA4:0.779093247421;POU5F1:0.761689106812;ESR1:0.752321298392;GTF2A1,2:0.748701964938;HSF1,2:0.746467010081;HMX1:0.722658888316;NKX3-1:0.721332481055;PAX3,7:0.720655706173;HOX{A4,D4}:0.714683903197;NR6A1:0.711804651891;SOX17:0.68292043113;IKZF1:0.682564670246;MZF1:0.680458564289;PAX1,9:0.680303719162;NKX3-2:0.674802720923;GTF2I:0.661344064893;TP53:0.650292391322;MAZ:0.646233702574;TFCP2:0.621733744269;NFATC1..3:0.620059603328;HIC1:0.594483449453;RXR{A,B,G}:0.577865952868;ZNF384:0.553103146824;HLF:0.536927290354;PAX8:0.52959292966;POU3F1..4:0.527617350645;PRDM1:0.526288650939;ALX4:0.496493138338;EGR1..3:0.396450179227;MTF1:0.386211078739;TBP:0.375636751466;EBF1:0.370340885119;POU1F1:0.366562704687;ZNF148:0.356910337006;PAX5:0.354243757686;ZBTB6:0.335749288265;RXRA_VDR{dimer}:0.328078142682;CDC5L:0.297633276903;ATF6:0.274382175836;E2F1..5:0.254909556373;SMAD1..7,9:0.252338721022;AHR_ARNT_ARNT2:0.247290100818;AR:0.204428277309;PATZ1:0.203334201939;PITX1..3:0.199480327632;MYB:0.193996291326;NANOG{mouse}:0.192641564368;POU6F1:0.188294205903;TBX4,5:0.17345056509;ZIC1..3:0.16536484196;ZNF238:0.16276935278;ZFP161:0.151274103079;ZBTB16:0.139559272722;TOPORS:0.137421968854;PAX4:0.107189141785;NFIX:0.0989019850761;NFE2L1:0.0804317630823;T:0.0747713014517;BREu{core}:0.0674329367168;LHX3,4:0.0671679889293;SPZ1:0.0478490477049;MED-1{core}:0.0427123977197;BACH2:0.00294063761263;ONECUT1,2:-0.0034820123413;RREB1:-0.0134062024777;STAT2,4,6:-0.0252822944201;MEF2{A,B,C,D}:-0.0301454311602;CREB1:-0.0378980631964;GFI1:-0.0416576873989;LEF1_TCF7_TCF7L1,2:-0.0551939480991;FOS_FOS{B,L1}_JUN{B,D}:-0.0622141230694;NFE2L2:-0.0833983808583;FOSL2:-0.105696977554;STAT5{A,B}:-0.114500535867;HNF1A:-0.118681237202;CEBPA,B_DDIT3:-0.125095815893;JUN:-0.130533450153;DMAP1_NCOR{1,2}_SMARC:-0.136274120578;FOXO1,3,4:-0.141200818318;ZNF143:-0.151251274989;FOXD3:-0.168708099305;NHLH1,2:-0.168922140561;ZNF423:-0.188060553469;REST:-0.212428614122;DBP:-0.219687620223;MYFfamily:-0.229713107815;TEF:-0.248773478883;SP1:-0.264274229037;NKX2-1,4:-0.266941981197;PAX6:-0.271803001588;VSX1,2:-0.280300143597;FOX{F1,F2,J1}:-0.282237726617;PAX2:-0.288233988783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.288880936169;NKX2-3_NKX2-5:-0.307604372436;FOXP3:-0.323964935469;RUNX1..3:-0.326143448864;NR5A1,2:-0.34443563008;NFE2:-0.35011557839;NFKB1_REL_RELA:-0.359747268507;IRF1,2:-0.374016920237;bHLH_family:-0.381360521781;ELK1,4_GABP{A,B1}:-0.411160341428;FOX{I1,J2}:-0.434142811218;ATF4:-0.441394331621;IKZF2:-0.443265336816;CRX:-0.447397737804;FOX{D1,D2}:-0.455274584303;RFX1:-0.455931628389;SPI1:-0.461318308037;SOX5:-0.488275388006;NRF1:-0.502805095005;ARID5B:-0.508514073044;NFIL3:-0.516954180692;ETS1,2:-0.518261490571;OCT4_SOX2{dimer}:-0.52089675596;TGIF1:-0.535850671039;SOX2:-0.538240021211;EP300:-0.543711796272;YY1:-0.573181701029;ATF2:-0.590509402473;ATF5_CREB3:-0.60560347185;PRRX1,2:-0.621695465625;PDX1:-0.6299893037;SPIB:-0.637051539128;FOXN1:-0.637434144656;SOX{8,9,10}:-0.652753568859;FOXP1:-0.668634888315;POU2F1..3:-0.680128943355;ALX1:-0.690472909757;BPTF:-0.693046238468;SNAI1..3:-0.717775688367;CUX2:-0.734313446531;HNF4A_NR2F1,2:-0.781041361923;TLX2:-0.824708691918;NR1H4:-0.841358084952;ELF1,2,4:-0.848746713161;NFY{A,B,C}:-0.865369451842;IRF7:-0.890364101914;SREBF1,2:-0.891482563696;GATA6:-0.902789301738;ZEB1:-0.92536116407;FOXM1:-0.951622582179;FOXQ1:-0.981132612134;STAT1,3:-0.991428147554;ESRRA:-1.04902029593;HOXA9_MEIS1:-1.04992103428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09520300802;NANOG:-1.1035716856;LMO2:-1.11012511303;RORA:-1.11509849107;CDX1,2,4:-1.20521295482;NKX6-1,2:-1.25715381365;RFX2..5_RFXANK_RFXAP:-1.38342211095;PBX1:-1.49420062243;MYOD1:-1.62295729426;RBPJ:-1.76459346217
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10737-110B8;search_select_hide=table117:FF:10737-110B8
}}
}}

Latest revision as of 15:02, 3 June 2020

Name:spindle cell sarcoma cell line:Hs 132.T
Species:Human (Homo sapiens)
Library ID:CNhs11857
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueconnective tissue
dev stageNA
sexmale
age49
cell typeunclassifiable
cell lineHs 132.T
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005299
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11857 CAGE DRX008012 DRR008884
Accession ID Hg19

Library idBAMCTSS
CNhs11857 DRZ000309 DRZ001694
Accession ID Hg38

Library idBAMCTSS
CNhs11857 DRZ011659 DRZ013044
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0915
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.129
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.873
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0941
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.114
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.267
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.184
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.223
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.458
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.0682
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.124
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.179
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.34
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.0682
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0266
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0337
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.151
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.267
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.225
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.608
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.34
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.882
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.91
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.797
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.785
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11857

Jaspar motifP-value
MA0002.20.114
MA0003.10.71
MA0004.10.0289
MA0006.10.191
MA0007.10.723
MA0009.10.521
MA0014.10.197
MA0017.10.0907
MA0018.20.00254
MA0019.10.98
MA0024.10.732
MA0025.10.0179
MA0027.10.97
MA0028.10.00136
MA0029.10.0798
MA0030.10.193
MA0031.10.033
MA0035.20.0106
MA0038.10.0604
MA0039.20.0305
MA0040.10.57
MA0041.10.507
MA0042.10.712
MA0043.16.1117e-4
MA0046.10.599
MA0047.20.54
MA0048.10.0233
MA0050.10.00919
MA0051.10.0149
MA0052.10.215
MA0055.10.728
MA0057.10.512
MA0058.14.27792e-4
MA0059.10.169
MA0060.11.19335e-6
MA0061.10.00356
MA0062.29.64526e-10
MA0065.20.00585
MA0066.10.843
MA0067.10.00861
MA0068.10.406
MA0069.10.309
MA0070.10.245
MA0071.10.592
MA0072.10.269
MA0073.10.922
MA0074.10.76
MA0076.11.16468e-5
MA0077.10.613
MA0078.10.89
MA0079.20.76
MA0080.24.47245e-8
MA0081.10.00191
MA0083.10.0266
MA0084.10.604
MA0087.10.932
MA0088.10.0821
MA0090.15.75917e-5
MA0091.10.828
MA0092.10.0713
MA0093.10.0235
MA0099.20.0711
MA0100.10.489
MA0101.10.00116
MA0102.20.0142
MA0103.17.57997e-4
MA0104.20.00215
MA0105.14.18663e-4
MA0106.10.452
MA0107.10.00583
MA0108.20.00162
MA0111.10.0894
MA0112.20.477
MA0113.10.924
MA0114.10.00654
MA0115.10.369
MA0116.10.0219
MA0117.10.412
MA0119.10.566
MA0122.10.193
MA0124.10.128
MA0125.10.128
MA0131.10.525
MA0135.10.512
MA0136.13.47696e-13
MA0137.20.11
MA0138.21
MA0139.10.0818
MA0140.10.0969
MA0141.10.324
MA0142.10.133
MA0143.10.797
MA0144.10.752
MA0145.10.779
MA0146.10.12
MA0147.10.0125
MA0148.10.272
MA0149.10.842
MA0150.10.0201
MA0152.10.063
MA0153.10.503
MA0154.10.049
MA0155.10.723
MA0156.13.46451e-8
MA0157.10.105
MA0159.10.291
MA0160.10.0781
MA0162.10.703
MA0163.10.0604
MA0164.10.722
MA0258.10.152
MA0259.10.223



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11857

Novel motifP-value
10.349
100.271
1000.166
1010.208
1020.299
1030.765
1040.889
1050.0786
1060.367
1070.0546
1080.29
1090.213
110.5
1100.262
1110.923
1120.84
1130.0173
1140.482
1150.0513
1160.0909
1170.115
1180.119
1190.922
120.334
1200.737
1210.662
1220.411
1230.0045
1240.0871
1250.499
1260.598
1270.746
1280.682
1290.415
130.163
1300.789
1310.93
1320.44
1330.734
1340.321
1350.83
1360.614
1370.347
1380.807
1390.456
140.221
1400.216
1410.112
1420.91
1430.973
1440.721
1450.78
1460.224
1470.00787
1480.298
1490.239
150.295
1500.101
1510.774
1520.0572
1530.561
1540.205
1550.0566
1560.691
1570.147
1580.0168
1590.498
160.152
1600.403
1610.338
1620.936
1630.309
1640.634
1650.165
1660.0769
1670.356
1680.527
1690.918
170.636
180.183
190.405
20.479
200.483
210.365
220.883
230.326
240.0918
250.241
260.843
270.478
280.289
290.307
30.424
300.569
310.868
329.69511e-10
330.163
340.747
350.0576
360.0043
370.584
380.491
390.431
40.648
400.0208
410.38
420.312
430.612
440.779
450.805
460.9
470.145
480.213
490.432
50.744
500.643
510.375
520.728
530.0951
540.994
550.499
560.91
570.865
580.162
590.688
60.739
600.907
610.137
620.372
630.836
640.233
650.848
660.885
670.422
680.324
690.859
70.13
700.839
710.0633
720.31
730.263
740.193
750.183
760.981
770.373
780.268
790.0137
80.833
800.336
810.822
820.25
830.131
840.456
850.746
860.955
870.629
880.929
890.159
90.981
900.749
910.613
920.368
930.974
940.722
950.545
960.92
970.366
980.214
990.0357



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11857


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
4235 (spindle cell sarcoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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