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(Created page with "{{f5samples |id=FF:10737-110B8 |name=spindle cell sarcoma cell line:Hs 132.T, biol_rep1 |sample_id=10737 |rna_tube_id=110B8 |rna_box=110 |rna_position=B8 |sample_cell_l...")
 
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{{f5samples
{{f5samples
|id=FF:10737-110B8
|DRA_sample_Accession=CAGE@SAMD00005299
|name=spindle cell sarcoma cell line:Hs 132.T, biol_rep1
|accession_numbers=CAGE;DRX008012;DRR008884;DRZ000309;DRZ001694;DRZ011659;DRZ013044
|sample_id=10737
|ancestors_in_anatomy_facet=
|rna_tube_id=110B8
|rna_box=110
|rna_position=B8
|sample_cell_lot=
|sample_cell_catalog=CRL-7085
|sample_company=ATCC
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=connective tissue
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=49
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.09000
|rna_od260/280=2.11000
|sample_cell_type=unclassifiable
|sample_cell_line=Hs 132.T
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=spindle cell sarcoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=42.10260
|rna_concentration=0.89580
|sample_note=
|profile_hcage=CNhs11857,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115,DOID:4235
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:4,DOID:4235
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
|sample_description=
|comment=
 
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.46!27.53!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.45!35.17!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.44!35.51!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.41!24.81!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.34!105.01!CREB3L1;;chr12:80085061..80085119,-!p6@PAWR!1.34!33.31!PAWR;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.05!EBF2;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.41!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.29!18.69!HOXC8;;chr1:170633058..170633084,+!p5@PRRX1!1.28!18.01!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!1.25!16.65!LHX9;;chr10:28034739..28034756,-!p1@MKX!1.25!16.65!MKX;;chr5:72744445..72744466,-!p2@FOXD1!1.24!27.36!FOXD1;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.35!GATA6;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.14!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.14!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.14!21.41!CREB3L1;;chr19:47523058..47523114,+!p1@NPAS1!1.14!12.91!NPAS1;;chr12:52445218..52445237,+!p1@NR4A1!1.10!146.82!NR4A1;;chr5:72744594..72744609,-!p1@FOXD1!1.08!51.15!FOXD1;;chr5:134369905..134369972,-!p1@PITX1!1.08!16.82!PITX1;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.54!PRRX1;;chr12:54402790..54402805,+!p2@HOXC8!1.05!10.20!HOXC8;;chr14:62162285..62162296,+!p3@HIF1A!1.04!52.34!HIF1A;;chr7:44143925..44143970,+!p1@AEBP1!1.03!217.85!AEBP1;;chr5:139492456..139492489,+!p7@PURA!1.03!9.69!PURA;;chr17:38256799..38256815,-!p3@NR1D1!1.02!17.50!NR1D1;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.52!HOXC9;;chr8:67525443..67525459,-!p2@MYBL1!1.01!13.76!MYBL1;;chr12:54379029..54379057,+!p2@HOXC10!1.01!9.18!HOXC10;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.79!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!1.00!15.97!DRAP1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!78.68!PPP1R13L;;chr1:23885981..23886002,-!p1@ID3!0.97!1509.63!ID3;;chr3:71630980..71631110,-!p3@FOXP1!0.96!29.23!FOXP1;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.18!TCF4;;chr3:157823517..157823562,-!p1@SHOX2!0.96!8.67!SHOX2;;chr12:54378923..54378966,+!p1@HOXC10!0.96!8.16!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!0.96!8.16!HOXA9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.95!7.99!HOXC5;;chr7:1577899..1577943,+!p3@MAFK!0.94!7.65!MAFK;;chr17:1959369..1959388,+!p2@HIC1!0.93!20.39!HIC1;;chr14:62162258..62162269,+!p2@HIF1A!0.92!73.58!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.91!29.06!FOSL1;;chr7:44143978..44143989,+!p2@AEBP1!0.91!13.42!AEBP1;;chr7:137686763..137686784,-!p5@CREB3L2!0.91!12.57!CREB3L2;;chr20:50179368..50179392,-!p2@NFATC2!0.89!8.84!NFATC2;;chr12:80085120..80085156,-!p14@PAWR!0.89!6.80!PAWR;;chr8:49833978..49833996,-!p1@SNAI2!0.88!144.27!SNAI2;;chr20:42543441..42543497,+!p1@TOX2!0.88!31.27!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.51!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.88!16.65!ZNF281;;chr17:38256822..38256851,-!p1@NR1D1!0.87!53.70!NR1D1;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.14!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.86!660.00!EPAS1;;chr7:15726243..15726293,-!p2@MEOX2!0.86!6.29!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.29!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.12!HOXA11;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.19!TBX3;;chr8:106330656..106330684,+!p1@ZFPM2!0.84!16.48!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.14!FOXD1;;chr6:19837592..19837621,+!p1@ID4!0.83!37.72!ID4;;chr12:124873852..124873881,-!p3@NCOR2!0.83!37.04!NCOR2;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.78!HOXA11;;chr2:176994408..176994492,+!p1@HOXD8!0.83!5.78!HOXD8;;chr10:63809106..63809127,+!p1@ARID5B!0.82!80.89!ARID5B;;chr18:19749386..19749404,+!p2@GATA6!0.82!8.33!GATA6;;chr7:15726296..15726315,-!p1@MEOX2!0.82!5.61!MEOX2;;chr12:54380404..54380433,+!p3@HOXC10!0.82!5.61!HOXC10;;chr19:16435625..16435682,+!p1@KLF2!0.81!191.34!KLF2;;chr12:53614115..53614154,-!p1@RARG!0.81!31.10!RARG;;chr2:121493492..121493537,+!p2@GLI2!0.81!9.52!GLI2;;chr11:12696071..12696086,+!p3@TEAD1!0.81!7.31!TEAD1;;chr12:54447637..54447659,+!p4@HOXC4!0.81!5.44!HOXC4;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.44!HOXA9;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.44!KDM5D;;chr2:172967242..172967265,-!p2@DLX2!0.80!5.27!DLX2;;chr5:134369879..134369898,-!p2@PITX1!0.80!5.27!PITX1;;chr5:72744336..72744359,-!p5@FOXD1!0.80!5.27!FOXD1;;chr12:54394309..54394336,+!p2@HOXC9!0.80!5.27!HOXC9;;chr2:121493425..121493474,+!p1@GLI2!0.79!11.89!GLI2;;chr20:42543506..42543549,+!p2@TOX2!0.78!12.74!TOX2;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.65!SATB2;;chr12:54380036..54380091,+!p4@HOXC10!0.77!4.93!HOXC10;;chr6:85473156..85473210,-!p2@TBX18!0.76!5.95!TBX18;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.76!ZFY;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.24!DRAP1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.59!PRRX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.74!58.79!PLAGL1;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.27!BNC1;;chr19:50432453..50432468,+!p1@ATF5!0.73!274.60!ATF5;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.29!TWIST2;;chr12:274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|fonse_cell_line=FF:10737-110B8
|fonse_cell_line=FF:10737-110B8
|fonse_cell_line_closure=FF:10737-110B8
|fonse_cell_line_closure=FF:10737-110B8
Line 67: Line 39:
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|id=FF:10737-110B8
|is_a=DOID:4235;;EFO:0002091;;FF:0000003;;FF:0000210
|is_obsolete=
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|name=spindle cell sarcoma cell line:Hs 132.T
|namespace=FANTOM5
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|rna_box=110
|rna_catalog_number=
|rna_concentration=0.8958
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.09
|rna_od260/280=2.11
|rna_position=B8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110B8
|rna_weight_ug=42.1026
|sample_age=49
|sample_category=cell lines
|sample_cell_catalog=CRL-7085
|sample_cell_line=Hs 132.T
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=spindle cell sarcoma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.83185547970867e-219!GO:0005737;cytoplasm;4.88939900217783e-176!GO:0043226;organelle;2.78581415487453e-174!GO:0043229;intracellular organelle;5.82239615257983e-174!GO:0043231;intracellular membrane-bound organelle;5.29862639563017e-168!GO:0043227;membrane-bound organelle;1.06298045066303e-167!GO:0044422;organelle part;2.08293515849873e-127!GO:0044446;intracellular organelle part;4.18430891715247e-126!GO:0044444;cytoplasmic part;7.96905905582675e-120!GO:0005515;protein binding;1.01792874150408e-86!GO:0032991;macromolecular complex;2.98115100122102e-86!GO:0044238;primary metabolic process;6.22617379255452e-79!GO:0043170;macromolecule metabolic process;6.02571453092958e-78!GO:0044237;cellular metabolic process;4.49099716101749e-77!GO:0030529;ribonucleoprotein complex;3.50719763193286e-71!GO:0005634;nucleus;4.87447459720999e-66!GO:0043233;organelle lumen;4.59405456935307e-61!GO:0031974;membrane-enclosed lumen;4.59405456935307e-61!GO:0044428;nuclear part;2.0804912819768e-60!GO:0003723;RNA binding;9.37550178466253e-57!GO:0016043;cellular component organization and biogenesis;6.31746628841125e-54!GO:0005739;mitochondrion;6.03907745784628e-50!GO:0019538;protein metabolic process;1.22888600604374e-49!GO:0031090;organelle membrane;2.9934207049045e-46!GO:0043234;protein complex;1.41358309887005e-44!GO:0044260;cellular macromolecule metabolic process;5.50690992083305e-44!GO:0006412;translation;5.50690992083305e-44!GO:0005840;ribosome;1.11142304066169e-43!GO:0044267;cellular protein metabolic process;5.34378628004704e-43!GO:0043283;biopolymer metabolic process;1.34577172337877e-42!GO:0015031;protein transport;1.37904222538092e-42!GO:0033036;macromolecule localization;2.39619569210106e-41!GO:0003735;structural constituent of ribosome;7.69054070619039e-39!GO:0045184;establishment of protein localization;9.87606059698376e-39!GO:0008104;protein localization;2.43378801138143e-38!GO:0031981;nuclear lumen;5.71637738248494e-37!GO:0006396;RNA processing;1.96555899707166e-36!GO:0046907;intracellular transport;5.87888278719844e-36!GO:0005829;cytosol;9.08331092372492e-36!GO:0010467;gene expression;3.98044417877706e-35!GO:0044429;mitochondrial part;8.66816943226323e-35!GO:0009059;macromolecule biosynthetic process;2.09219670443577e-34!GO:0033279;ribosomal subunit;5.79137252219808e-34!GO:0009058;biosynthetic process;8.48946861891955e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.65417270365425e-33!GO:0044249;cellular biosynthetic process;1.05579164803712e-32!GO:0031967;organelle envelope;1.12204247299309e-32!GO:0006996;organelle organization and biogenesis;1.1972892407471e-32!GO:0031975;envelope;1.78500870300142e-32!GO:0043228;non-membrane-bound organelle;6.65659045759291e-32!GO:0043232;intracellular non-membrane-bound organelle;6.65659045759291e-32!GO:0016071;mRNA metabolic process;4.59503876783176e-31!GO:0065003;macromolecular complex assembly;7.38312503257515e-30!GO:0006886;intracellular protein transport;1.44038880431531e-28!GO:0022607;cellular component assembly;1.52488673951971e-28!GO:0008380;RNA splicing;3.72384859582156e-28!GO:0006397;mRNA processing;2.54010620382211e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.93265683925932e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.57269223705148e-26!GO:0006259;DNA metabolic process;1.91746514283632e-25!GO:0005654;nucleoplasm;2.16450966123014e-23!GO:0005740;mitochondrial envelope;3.01669802223846e-23!GO:0051641;cellular localization;1.01697687040246e-22!GO:0051649;establishment of cellular localization;1.1032113687079e-22!GO:0031966;mitochondrial membrane;5.80406167072104e-22!GO:0000166;nucleotide binding;1.48417055447953e-21!GO:0019866;organelle inner membrane;3.94045177017447e-21!GO:0007049;cell cycle;1.50294552330268e-20!GO:0044445;cytosolic part;1.96093061526618e-20!GO:0005681;spliceosome;4.22443886508475e-20!GO:0012505;endomembrane system;5.62415529150219e-20!GO:0006457;protein folding;1.37994848315889e-19!GO:0005743;mitochondrial inner membrane;1.37994848315889e-19!GO:0016462;pyrophosphatase activity;2.10153192891183e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.7797814542927e-19!GO:0044451;nucleoplasm part;3.39414811935026e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;4.73464924618623e-19!GO:0017111;nucleoside-triphosphatase activity;4.9146867649853e-19!GO:0006119;oxidative phosphorylation;5.14488085707866e-19!GO:0005794;Golgi apparatus;9.12148982274199e-19!GO:0005783;endoplasmic reticulum;2.39989184737776e-18!GO:0003676;nucleic acid binding;5.53568034917255e-18!GO:0015934;large ribosomal subunit;6.85563476567305e-18!GO:0044455;mitochondrial membrane part;8.13692650645693e-18!GO:0022618;protein-RNA complex assembly;2.94264312128171e-17!GO:0008134;transcription factor binding;3.37230698745957e-17!GO:0048770;pigment granule;3.7365141612438e-17!GO:0042470;melanosome;3.7365141612438e-17!GO:0015935;small ribosomal subunit;4.87209465431608e-17!GO:0048193;Golgi vesicle transport;2.11616934935573e-16!GO:0006512;ubiquitin cycle;3.63613083544753e-16!GO:0032553;ribonucleotide binding;6.16152644993216e-16!GO:0032555;purine ribonucleotide binding;6.16152644993216e-16!GO:0016874;ligase activity;1.59265506446741e-15!GO:0017076;purine nucleotide binding;1.61601054438351e-15!GO:0044432;endoplasmic reticulum part;2.78229766440662e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.61280704564757e-15!GO:0005746;mitochondrial respiratory chain;4.82286465200839e-15!GO:0019941;modification-dependent protein catabolic process;7.22711555207601e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.22711555207601e-15!GO:0016070;RNA metabolic process;7.22711555207601e-15!GO:0044265;cellular macromolecule catabolic process;7.65802717351306e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.7544903277428e-15!GO:0044257;cellular protein catabolic process;1.00366764362094e-14!GO:0022402;cell cycle process;1.22704756882468e-14!GO:0006605;protein targeting;1.2481583119923e-14!GO:0043285;biopolymer catabolic process;1.64869036688378e-14!GO:0043412;biopolymer modification;2.69083962798547e-14!GO:0005730;nucleolus;3.89902689488478e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.98187199323862e-14!GO:0008135;translation factor activity, nucleic acid binding;4.16894341490062e-14!GO:0051082;unfolded protein binding;5.86426655780283e-14!GO:0031980;mitochondrial lumen;6.27367148926225e-14!GO:0005759;mitochondrial matrix;6.27367148926225e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.26420679517793e-13!GO:0003954;NADH dehydrogenase activity;1.26420679517793e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.26420679517793e-13!GO:0005524;ATP binding;2.14351847097776e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.5995719041888e-13!GO:0000278;mitotic cell cycle;2.74669810589429e-13!GO:0016192;vesicle-mediated transport;2.91109693370183e-13!GO:0006974;response to DNA damage stimulus;3.07788724147742e-13!GO:0032559;adenyl ribonucleotide binding;3.94233715546344e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.27947261663537e-13!GO:0009057;macromolecule catabolic process;4.33209512719749e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.15030563334047e-13!GO:0030163;protein catabolic process;5.31582459107055e-13!GO:0006464;protein modification process;5.68570557569105e-13!GO:0030554;adenyl nucleotide binding;1.47041245696265e-12!GO:0048523;negative regulation of cellular process;2.19354385610091e-12!GO:0051186;cofactor metabolic process;2.20394108654483e-12!GO:0005793;ER-Golgi intermediate compartment;1.07505448968192e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.18179340588312e-11!GO:0045271;respiratory chain complex I;1.18179340588312e-11!GO:0005747;mitochondrial respiratory chain complex I;1.18179340588312e-11!GO:0005761;mitochondrial ribosome;1.28095167477061e-11!GO:0000313;organellar ribosome;1.28095167477061e-11!GO:0012501;programmed cell death;1.36681966471214e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.45965299146984e-11!GO:0042773;ATP synthesis coupled electron transport;1.45965299146984e-11!GO:0043687;post-translational protein modification;2.11987197606959e-11!GO:0005694;chromosome;2.25512062957578e-11!GO:0003743;translation initiation factor activity;2.64851085797308e-11!GO:0003712;transcription cofactor activity;2.68197867871843e-11!GO:0006413;translational initiation;2.94194751819154e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.94438324569646e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.436308082216e-11!GO:0006915;apoptosis;3.64162142318609e-11!GO:0044248;cellular catabolic process;5.20102071404759e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;8.81003382684632e-11!GO:0000375;RNA splicing, via transesterification reactions;8.81003382684632e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.81003382684632e-11!GO:0006913;nucleocytoplasmic transport;1.14764491559706e-10!GO:0006260;DNA replication;1.24916583856908e-10!GO:0048519;negative regulation of biological process;1.29319851883466e-10!GO:0006281;DNA repair;1.39309082300427e-10!GO:0051276;chromosome organization and biogenesis;1.51500029049682e-10!GO:0008219;cell death;1.61455755739843e-10!GO:0016265;death;1.61455755739843e-10!GO:0008639;small protein conjugating enzyme activity;1.68589004931437e-10!GO:0009055;electron carrier activity;1.68589004931437e-10!GO:0006366;transcription from RNA polymerase II promoter;2.00513595161813e-10!GO:0051169;nuclear transport;2.22289411829916e-10!GO:0009719;response to endogenous stimulus;2.41747856534397e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.6431340887964e-10!GO:0044427;chromosomal part;2.86704210761425e-10!GO:0005635;nuclear envelope;3.17836056878692e-10!GO:0004842;ubiquitin-protein ligase activity;3.42108680644734e-10!GO:0016887;ATPase activity;4.89287735597778e-10!GO:0019787;small conjugating protein ligase activity;5.57846361493162e-10!GO:0031965;nuclear membrane;6.13985559230897e-10!GO:0006446;regulation of translational initiation;6.18864203411798e-10!GO:0042623;ATPase activity, coupled;7.09924729380492e-10!GO:0044453;nuclear membrane part;7.79296790746035e-10!GO:0050794;regulation of cellular process;8.1298765241971e-10!GO:0016604;nuclear body;8.30462749104403e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;8.4128670434631e-10!GO:0005789;endoplasmic reticulum membrane;8.80826202807343e-10!GO:0022403;cell cycle phase;9.89173133725179e-10!GO:0042254;ribosome biogenesis and assembly;1.21177379415629e-09!GO:0006732;coenzyme metabolic process;1.52919754354586e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.93300734071393e-09!GO:0006323;DNA packaging;3.28919993698231e-09!GO:0009259;ribonucleotide metabolic process;3.3099756272762e-09!GO:0044431;Golgi apparatus part;3.93797020596326e-09!GO:0051726;regulation of cell cycle;4.29515327877663e-09!GO:0000074;regulation of progression through cell cycle;6.17067110633363e-09!GO:0030120;vesicle coat;8.42377793318998e-09!GO:0030662;coated vesicle membrane;8.42377793318998e-09!GO:0016881;acid-amino acid ligase activity;9.3815531428064e-09!GO:0008565;protein transporter activity;9.4339268981525e-09!GO:0006461;protein complex assembly;1.202869440822e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.27570756435323e-08!GO:0005788;endoplasmic reticulum lumen;1.35011928836715e-08!GO:0000087;M phase of mitotic cell cycle;1.63772304773145e-08!GO:0031324;negative regulation of cellular metabolic process;1.66668449820832e-08!GO:0006163;purine nucleotide metabolic process;1.78616591154496e-08!GO:0003714;transcription corepressor activity;1.78632338337888e-08!GO:0009150;purine ribonucleotide metabolic process;1.92737976716674e-08!GO:0005768;endosome;1.96231848603066e-08!GO:0007067;mitosis;2.21180677040165e-08!GO:0051301;cell division;2.28637798680961e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.40142937459737e-08!GO:0009260;ribonucleotide biosynthetic process;3.01407508104245e-08!GO:0017038;protein import;3.26415824481697e-08!GO:0004386;helicase activity;3.6602898882476e-08!GO:0006164;purine nucleotide biosynthetic process;5.9367020140264e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.1395039171419e-08!GO:0005643;nuclear pore;6.64111110074969e-08!GO:0051246;regulation of protein metabolic process;8.22400257147567e-08!GO:0065002;intracellular protein transport across a membrane;8.84853437159095e-08!GO:0016607;nuclear speck;9.38034881180303e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.45651900841125e-08!GO:0016564;transcription repressor activity;1.01421791246078e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.07907723350166e-07!GO:0006333;chromatin assembly or disassembly;1.21688158870747e-07!GO:0065004;protein-DNA complex assembly;1.25489041998419e-07!GO:0009141;nucleoside triphosphate metabolic process;1.52234378586676e-07!GO:0008361;regulation of cell size;1.69070254648635e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.76498206927145e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.76498206927145e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.76498206927145e-07!GO:0008026;ATP-dependent helicase activity;2.0667432699634e-07!GO:0003924;GTPase activity;2.07375893635712e-07!GO:0009892;negative regulation of metabolic process;2.13707438489706e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.23465940603394e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.23465940603394e-07!GO:0006399;tRNA metabolic process;2.38938130642787e-07!GO:0000785;chromatin;2.52981522991768e-07!GO:0016049;cell growth;2.64808048931523e-07!GO:0043069;negative regulation of programmed cell death;2.88855013590408e-07!GO:0043038;amino acid activation;3.17066872836721e-07!GO:0006418;tRNA aminoacylation for protein translation;3.17066872836721e-07!GO:0043039;tRNA aminoacylation;3.17066872836721e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.18718678544754e-07!GO:0048475;coated membrane;3.39957036018319e-07!GO:0030117;membrane coat;3.39957036018319e-07!GO:0043067;regulation of programmed cell death;3.65929155880659e-07!GO:0050789;regulation of biological process;3.68132934478576e-07!GO:0042981;regulation of apoptosis;4.7157203573581e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.8466650140035e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.8466650140035e-07!GO:0015986;ATP synthesis coupled proton transport;5.87164452554864e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.87164452554864e-07!GO:0005798;Golgi-associated vesicle;5.88882493798851e-07!GO:0000139;Golgi membrane;6.05168009386145e-07!GO:0007010;cytoskeleton organization and biogenesis;6.20692122589981e-07!GO:0006793;phosphorus metabolic process;6.32193811504849e-07!GO:0006796;phosphate metabolic process;6.32193811504849e-07!GO:0006916;anti-apoptosis;6.33897281554043e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.75530382050404e-07!GO:0043066;negative regulation of apoptosis;6.7696015825316e-07!GO:0003697;single-stranded DNA binding;7.41321864766532e-07!GO:0015630;microtubule cytoskeleton;7.7982907316959e-07!GO:0046930;pore complex;7.90535744574405e-07!GO:0043566;structure-specific DNA binding;8.66590913937731e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.70871242836332e-07!GO:0019829;cation-transporting ATPase activity;8.76731269317722e-07!GO:0009060;aerobic respiration;8.8014657969852e-07!GO:0006403;RNA localization;9.06701463924401e-07!GO:0046034;ATP metabolic process;9.45449072429236e-07!GO:0032446;protein modification by small protein conjugation;9.6494586654182e-07!GO:0050657;nucleic acid transport;9.6494586654182e-07!GO:0051236;establishment of RNA localization;9.6494586654182e-07!GO:0050658;RNA transport;9.6494586654182e-07!GO:0000151;ubiquitin ligase complex;1.21962705890052e-06!GO:0000279;M phase;1.24353133550895e-06!GO:0005667;transcription factor complex;1.32118328388942e-06!GO:0016567;protein ubiquitination;1.36645290380359e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.36948016964398e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.36948016964398e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.40537679485554e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.64975058693632e-06!GO:0031988;membrane-bound vesicle;1.77089195230763e-06!GO:0001558;regulation of cell growth;2.04329016656217e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.08286616715316e-06!GO:0009056;catabolic process;2.46377884388504e-06!GO:0051188;cofactor biosynthetic process;3.01228345485593e-06!GO:0006334;nucleosome assembly;3.28645172941684e-06!GO:0030029;actin filament-based process;3.33697344725428e-06!GO:0016310;phosphorylation;4.12493527016923e-06!GO:0045333;cellular respiration;4.15310130289151e-06!GO:0051170;nuclear import;4.30103289953938e-06!GO:0006364;rRNA processing;4.40571406514291e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.49566309345134e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.38946289973206e-06!GO:0031252;leading edge;5.54043116530002e-06!GO:0006754;ATP biosynthetic process;5.54043116530002e-06!GO:0006753;nucleoside phosphate metabolic process;5.54043116530002e-06!GO:0006606;protein import into nucleus;5.82687847478533e-06!GO:0016481;negative regulation of transcription;5.82687847478533e-06!GO:0008092;cytoskeletal protein binding;6.66891856631383e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.66368819283749e-06!GO:0007005;mitochondrion organization and biogenesis;8.33473949668989e-06!GO:0031497;chromatin assembly;8.48902571349015e-06!GO:0016072;rRNA metabolic process;8.88629560648125e-06!GO:0000245;spliceosome assembly;8.97315225825153e-06!GO:0044440;endosomal part;8.97665579305861e-06!GO:0010008;endosome membrane;8.97665579305861e-06!GO:0031982;vesicle;1.00048465805994e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.01664460524036e-05!GO:0045259;proton-transporting ATP synthase complex;1.03059290627456e-05!GO:0031410;cytoplasmic vesicle;1.06967759318353e-05!GO:0005813;centrosome;1.23215975904811e-05!GO:0051187;cofactor catabolic process;1.54751764990648e-05!GO:0016740;transferase activity;1.62766398041616e-05!GO:0051789;response to protein stimulus;1.73334508325217e-05!GO:0006986;response to unfolded protein;1.73334508325217e-05!GO:0006613;cotranslational protein targeting to membrane;1.83214045481265e-05!GO:0006099;tricarboxylic acid cycle;1.89446986312663e-05!GO:0046356;acetyl-CoA catabolic process;1.89446986312663e-05!GO:0016568;chromatin modification;2.10666032047208e-05!GO:0051325;interphase;2.1911721452611e-05!GO:0051028;mRNA transport;2.20309927552478e-05!GO:0051329;interphase of mitotic cell cycle;2.28578366795767e-05!GO:0009117;nucleotide metabolic process;2.59507462158918e-05!GO:0005769;early endosome;2.63756440329584e-05!GO:0009109;coenzyme catabolic process;2.66469027463413e-05!GO:0005815;microtubule organizing center;2.86635049685654e-05!GO:0043623;cellular protein complex assembly;2.90340664836869e-05!GO:0016787;hydrolase activity;2.94869092678182e-05!GO:0016563;transcription activator activity;3.14712282208036e-05!GO:0005770;late endosome;3.16975452938911e-05!GO:0006752;group transfer coenzyme metabolic process;3.52975339832531e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.56232364834381e-05!GO:0005819;spindle;3.68919294267282e-05!GO:0045786;negative regulation of progression through cell cycle;3.98622055486016e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.07075900990828e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.11787223303564e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.20625853823344e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.3785870416878e-05!GO:0030133;transport vesicle;4.51584852022029e-05!GO:0006084;acetyl-CoA metabolic process;4.71757444417896e-05!GO:0005525;GTP binding;5.22674021694703e-05!GO:0016859;cis-trans isomerase activity;5.44797916421813e-05!GO:0030867;rough endoplasmic reticulum membrane;5.96975265453054e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.049735391992e-05!GO:0045454;cell redox homeostasis;6.16147264144928e-05!GO:0005773;vacuole;6.16147264144928e-05!GO:0019222;regulation of metabolic process;6.40995314504494e-05!GO:0016853;isomerase activity;6.40995314504494e-05!GO:0006261;DNA-dependent DNA replication;6.66526382257642e-05!GO:0016491;oxidoreductase activity;6.97552464204678e-05!GO:0005762;mitochondrial large ribosomal subunit;7.01929877555454e-05!GO:0000315;organellar large ribosomal subunit;7.01929877555454e-05!GO:0009108;coenzyme biosynthetic process;7.12925046445542e-05!GO:0005905;coated pit;8.10998433435876e-05!GO:0005839;proteasome core complex (sensu Eukaryota);8.33521918576734e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.04969335318981e-05!GO:0040008;regulation of growth;0.000114223640430568!GO:0015980;energy derivation by oxidation of organic compounds;0.000176731775780359!GO:0019867;outer membrane;0.000185203980704188!GO:0031968;organelle outer membrane;0.000214554295902724!GO:0019843;rRNA binding;0.000235734337266928!GO:0003724;RNA helicase activity;0.000248698996003428!GO:0048522;positive regulation of cellular process;0.000250521698439001!GO:0008654;phospholipid biosynthetic process;0.000257646393240231!GO:0030663;COPI coated vesicle membrane;0.000264090633132949!GO:0030126;COPI vesicle coat;0.000264090633132949!GO:0033116;ER-Golgi intermediate compartment membrane;0.000279463963086003!GO:0003713;transcription coactivator activity;0.000282857402878267!GO:0032561;guanyl ribonucleotide binding;0.000287377571442518!GO:0019001;guanyl nucleotide binding;0.000287377571442518!GO:0051168;nuclear export;0.000287911135849721!GO:0005885;Arp2/3 protein complex;0.000293518816682039!GO:0065007;biological regulation;0.000311730154328581!GO:0043021;ribonucleoprotein binding;0.000332229863563586!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000352853737239279!GO:0005048;signal sequence binding;0.000365871850919826!GO:0000323;lytic vacuole;0.000401831712023343!GO:0005764;lysosome;0.000401831712023343!GO:0004298;threonine endopeptidase activity;0.000411301509237108!GO:0019899;enzyme binding;0.000411301509237108!GO:0000075;cell cycle checkpoint;0.000416283850033141!GO:0008250;oligosaccharyl transferase complex;0.000419932808175185!GO:0030137;COPI-coated vesicle;0.000458111087403407!GO:0004576;oligosaccharyl transferase activity;0.000511665943343041!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00052459205352329!GO:0005741;mitochondrial outer membrane;0.000575996142479527!GO:0016779;nucleotidyltransferase activity;0.000581023085016432!GO:0007264;small GTPase mediated signal transduction;0.000586918514211465!GO:0007243;protein kinase cascade;0.000586918514211465!GO:0044262;cellular carbohydrate metabolic process;0.000597889419897202!GO:0051427;hormone receptor binding;0.000652137611147144!GO:0031072;heat shock protein binding;0.00070918230049871!GO:0016044;membrane organization and biogenesis;0.00082082233520017!GO:0006892;post-Golgi vesicle-mediated transport;0.000830876933047305!GO:0051052;regulation of DNA metabolic process;0.000839940297000704!GO:0051252;regulation of RNA metabolic process;0.000842099642464965!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000880828950125803!GO:0006891;intra-Golgi vesicle-mediated transport;0.000932835843601842!GO:0045892;negative regulation of transcription, DNA-dependent;0.000961920954826685!GO:0030658;transport vesicle membrane;0.00102857490933706!GO:0006612;protein targeting to membrane;0.00105112792463388!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00119795729852724!GO:0035257;nuclear hormone receptor binding;0.00122039675370429!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00122810488331679!GO:0030132;clathrin coat of coated pit;0.00123552254194131!GO:0018196;peptidyl-asparagine modification;0.00123714086758066!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00123714086758066!GO:0005791;rough endoplasmic reticulum;0.00124068218641309!GO:0003682;chromatin binding;0.00134260666662157!GO:0051920;peroxiredoxin activity;0.00139907401171145!GO:0003729;mRNA binding;0.00154088684692415!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00158163132630279!GO:0000314;organellar small ribosomal subunit;0.00158163132630279!GO:0005763;mitochondrial small ribosomal subunit;0.00158163132630279!GO:0048468;cell development;0.00158805352808657!GO:0006091;generation of precursor metabolites and energy;0.00162164833497098!GO:0005657;replication fork;0.00165650925234994!GO:0048471;perinuclear region of cytoplasm;0.00176762569216811!GO:0008094;DNA-dependent ATPase activity;0.00176985974708768!GO:0003899;DNA-directed RNA polymerase activity;0.00177681910094139!GO:0003779;actin binding;0.00177681910094139!GO:0016197;endosome transport;0.001798517515936!GO:0030134;ER to Golgi transport vesicle;0.00180949915676861!GO:0003690;double-stranded DNA binding;0.00192401726798704!GO:0043284;biopolymer biosynthetic process;0.0021193029025233!GO:0007051;spindle organization and biogenesis;0.00216320454494743!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00219408148034292!GO:0045045;secretory pathway;0.00221163938954946!GO:0000059;protein import into nucleus, docking;0.00221899373543459!GO:0006302;double-strand break repair;0.00232932418248062!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00246441954499915!GO:0015399;primary active transmembrane transporter activity;0.00246441954499915!GO:0048500;signal recognition particle;0.00249992931426303!GO:0030660;Golgi-associated vesicle membrane;0.00261136482967122!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00262637336440427!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00262637336440427!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00262637336440427!GO:0006626;protein targeting to mitochondrion;0.00270627755428446!GO:0000082;G1/S transition of mitotic cell cycle;0.00273357175482381!GO:0030127;COPII vesicle coat;0.00274221258415233!GO:0012507;ER to Golgi transport vesicle membrane;0.00274221258415233!GO:0051128;regulation of cellular component organization and biogenesis;0.0027643788541338!GO:0015631;tubulin binding;0.0027643788541338!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00284088841388652!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00294659014136641!GO:0048487;beta-tubulin binding;0.00298513031117482!GO:0004674;protein serine/threonine kinase activity;0.00324494500563557!GO:0006839;mitochondrial transport;0.00355822854279048!GO:0017166;vinculin binding;0.00356332920672849!GO:0004177;aminopeptidase activity;0.00356474698911219!GO:0008022;protein C-terminus binding;0.00356820049846689!GO:0000775;chromosome, pericentric region;0.00356832810575667!GO:0043681;protein import into mitochondrion;0.0036725563619466!GO:0030176;integral to endoplasmic reticulum membrane;0.00377002960862506!GO:0006402;mRNA catabolic process;0.0038479501809474!GO:0000786;nucleosome;0.00386018720469593!GO:0031543;peptidyl-proline dioxygenase activity;0.00390438421761243!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00402907470322511!GO:0008186;RNA-dependent ATPase activity;0.00404938796901514!GO:0008047;enzyme activator activity;0.00415828575239055!GO:0065009;regulation of a molecular function;0.0041859957416538!GO:0030659;cytoplasmic vesicle membrane;0.00435362338782958!GO:0043488;regulation of mRNA stability;0.00435362338782958!GO:0043487;regulation of RNA stability;0.00435362338782958!GO:0046474;glycerophospholipid biosynthetic process;0.00456704537225564!GO:0030027;lamellipodium;0.00458263193406406!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.004860585601396!GO:0009165;nucleotide biosynthetic process;0.00494982770760856!GO:0006383;transcription from RNA polymerase III promoter;0.005071451741477!GO:0003684;damaged DNA binding;0.005071451741477!GO:0006414;translational elongation;0.00549949131019038!GO:0031323;regulation of cellular metabolic process;0.00566504116202664!GO:0019798;procollagen-proline dioxygenase activity;0.00566793298997939!GO:0008139;nuclear localization sequence binding;0.00580054115963702!GO:0006509;membrane protein ectodomain proteolysis;0.0058626131861003!GO:0033619;membrane protein proteolysis;0.0058626131861003!GO:0007050;cell cycle arrest;0.006211120921283!GO:0001726;ruffle;0.00647763598855214!GO:0045941;positive regulation of transcription;0.00672539833805437!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00684533376842158!GO:0045047;protein targeting to ER;0.00684533376842158!GO:0016363;nuclear matrix;0.0070982465876177!GO:0007030;Golgi organization and biogenesis;0.00783372198215162!GO:0031418;L-ascorbic acid binding;0.00800390364065785!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0080367008413491!GO:0003678;DNA helicase activity;0.00824846163097761!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00852189386218843!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00852189386218843!GO:0007006;mitochondrial membrane organization and biogenesis;0.00858764360732201!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00866131145791129!GO:0008312;7S RNA binding;0.00912422893388866!GO:0048518;positive regulation of biological process;0.00912422893388866!GO:0006611;protein export from nucleus;0.00913547975932795!GO:0042802;identical protein binding;0.00930605063270549!GO:0043433;negative regulation of transcription factor activity;0.00931062662110262!GO:0030880;RNA polymerase complex;0.0093175233696502!GO:0045792;negative regulation of cell size;0.00939021675695322!GO:0031901;early endosome membrane;0.00939605033380548!GO:0005874;microtubule;0.00939605033380548!GO:0005684;U2-dependent spliceosome;0.0096838945106552!GO:0030118;clathrin coat;0.0096838945106552!GO:0008154;actin polymerization and/or depolymerization;0.0096974392509043!GO:0000049;tRNA binding;0.0096974392509043!GO:0006595;polyamine metabolic process;0.00970273129820204!GO:0004004;ATP-dependent RNA helicase activity;0.00970273129820204!GO:0006275;regulation of DNA replication;0.00983514092698862!GO:0005869;dynactin complex;0.00995007489531705!GO:0000776;kinetochore;0.0101176250350536!GO:0030308;negative regulation of cell growth;0.0106386326963023!GO:0030521;androgen receptor signaling pathway;0.0107334304223656!GO:0045893;positive regulation of transcription, DNA-dependent;0.0107452559772856!GO:0030833;regulation of actin filament polymerization;0.0108259806625107!GO:0006354;RNA elongation;0.0108273901679643!GO:0051101;regulation of DNA binding;0.0111595199595183!GO:0005801;cis-Golgi network;0.011289457141327!GO:0003746;translation elongation factor activity;0.011623881793613!GO:0046483;heterocycle metabolic process;0.0117782871278173!GO:0030125;clathrin vesicle coat;0.0117856139397222!GO:0030665;clathrin coated vesicle membrane;0.0117856139397222!GO:0005862;muscle thin filament tropomyosin;0.011832077538646!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0119440161085762!GO:0015002;heme-copper terminal oxidase activity;0.0119440161085762!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0119440161085762!GO:0004129;cytochrome-c oxidase activity;0.0119440161085762!GO:0019206;nucleoside kinase activity;0.0120026434816708!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0120400304679415!GO:0032508;DNA duplex unwinding;0.0120538883849822!GO:0032392;DNA geometric change;0.0120538883849822!GO:0005583;fibrillar collagen;0.0127917765641432!GO:0006401;RNA catabolic process;0.0129299884735546!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0129304220196348!GO:0046489;phosphoinositide biosynthetic process;0.0132100819207599!GO:0043492;ATPase activity, coupled to movement of substances;0.0132214006229835!GO:0051087;chaperone binding;0.0132214006229835!GO:0022890;inorganic cation transmembrane transporter activity;0.0135414986101053!GO:0033673;negative regulation of kinase activity;0.0138363505422187!GO:0006469;negative regulation of protein kinase activity;0.0138363505422187!GO:0001527;microfibril;0.0140241786958689!GO:0030041;actin filament polymerization;0.0141257083970819!GO:0005096;GTPase activator activity;0.0141835859001266!GO:0006650;glycerophospholipid metabolic process;0.014341166472254!GO:0006740;NADPH regeneration;0.0144568370201511!GO:0006098;pentose-phosphate shunt;0.0144568370201511!GO:0044433;cytoplasmic vesicle part;0.0145816565784974!GO:0035258;steroid hormone receptor binding;0.0147853283361088!GO:0007052;mitotic spindle organization and biogenesis;0.0158866743617476!GO:0006268;DNA unwinding during replication;0.0162678530814039!GO:0005100;Rho GTPase activator activity;0.0164855076106517!GO:0006607;NLS-bearing substrate import into nucleus;0.016549795031885!GO:0031902;late endosome membrane;0.0167393028099133!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0167953087918944!GO:0033043;regulation of organelle organization and biogenesis;0.0167953087918944!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0169402050662562!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0171967700645207!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0172104079730441!GO:0000339;RNA cap binding;0.0178868980289187!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0178956390087422!GO:0000428;DNA-directed RNA polymerase complex;0.0178956390087422!GO:0006950;response to stress;0.018009025126643!GO:0009112;nucleobase metabolic process;0.0182644825326224!GO:0000792;heterochromatin;0.0185395455997347!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0188253179485833!GO:0031124;mRNA 3'-end processing;0.0188379997006003!GO:0005637;nuclear inner membrane;0.0191303176294694!GO:0008180;signalosome;0.0191519092912956!GO:0016272;prefoldin complex;0.0191988599248943!GO:0005520;insulin-like growth factor binding;0.0193050468759818!GO:0031529;ruffle organization and biogenesis;0.0193946882360815!GO:0015992;proton transport;0.0199733415953875!GO:0006352;transcription initiation;0.0200153096089559!GO:0051348;negative regulation of transferase activity;0.0203360079751467!GO:0006350;transcription;0.0203509187612632!GO:0003711;transcription elongation regulator activity;0.0207872363021616!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0207881431592668!GO:0005581;collagen;0.0208272587529999!GO:0000287;magnesium ion binding;0.0208965622124072!GO:0008632;apoptotic program;0.0211567840429196!GO:0016301;kinase activity;0.0212637709041853!GO:0050681;androgen receptor binding;0.0212637709041853!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0212704660172283!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0214728930110074!GO:0031625;ubiquitin protein ligase binding;0.0214986313256463!GO:0043022;ribosome binding;0.021560150965306!GO:0006818;hydrogen transport;0.0216755992933625!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0222345292644933!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0225850191164287!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0225999218099902!GO:0005832;chaperonin-containing T-complex;0.0230570097959163!GO:0051098;regulation of binding;0.0231467284090096!GO:0030145;manganese ion binding;0.0231989047617053!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0234210415124317!GO:0009967;positive regulation of signal transduction;0.023459218781167!GO:0048144;fibroblast proliferation;0.0241659666972897!GO:0048145;regulation of fibroblast proliferation;0.0241659666972897!GO:0006497;protein amino acid lipidation;0.0243879646804152!GO:0044420;extracellular matrix part;0.024668547523681!GO:0009116;nucleoside metabolic process;0.0249136793695006!GO:0032940;secretion by cell;0.0250407899311574!GO:0007346;regulation of progression through mitotic cell cycle;0.0259628760992113!GO:0044452;nucleolar part;0.02639538268397!GO:0032984;macromolecular complex disassembly;0.0267722760975723!GO:0008243;plasminogen activator activity;0.0267960220992807!GO:0006417;regulation of translation;0.0270154056537719!GO:0008629;induction of apoptosis by intracellular signals;0.0276575367430784!GO:0051287;NAD binding;0.0276643056212594!GO:0006405;RNA export from nucleus;0.0277570514220142!GO:0022415;viral reproductive process;0.0280530739298202!GO:0007034;vacuolar transport;0.0281689490401894!GO:0035035;histone acetyltransferase binding;0.0282623761463028!GO:0003756;protein disulfide isomerase activity;0.0282800093580127!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0282800093580127!GO:0006897;endocytosis;0.0288077308108953!GO:0010324;membrane invagination;0.0288077308108953!GO:0043624;cellular protein complex disassembly;0.0289037065370251!GO:0030032;lamellipodium biogenesis;0.0292484145390077!GO:0050811;GABA receptor binding;0.0292756408683238!GO:0030384;phosphoinositide metabolic process;0.0294169472778624!GO:0012506;vesicle membrane;0.0294169472778624!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0294169472778624!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0294169472778624!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.029582466866488!GO:0046467;membrane lipid biosynthetic process;0.029582466866488!GO:0031371;ubiquitin conjugating enzyme complex;0.0299467783115821!GO:0006284;base-excision repair;0.0300314628741525!GO:0048146;positive regulation of fibroblast proliferation;0.0300314628741525!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0307995321211641!GO:0005876;spindle microtubule;0.0316471683039375!GO:0043065;positive regulation of apoptosis;0.0319271562469651!GO:0006778;porphyrin metabolic process;0.0319271562469651!GO:0033013;tetrapyrrole metabolic process;0.0319271562469651!GO:0006310;DNA recombination;0.0319978584343953!GO:0007040;lysosome organization and biogenesis;0.0321659859899826!GO:0016584;nucleosome positioning;0.0322524853351583!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0323226641177334!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.032511788315064!GO:0007093;mitotic cell cycle checkpoint;0.0329659708491217!GO:0007041;lysosomal transport;0.034818809901309!GO:0006338;chromatin remodeling;0.0348365331262182!GO:0000902;cell morphogenesis;0.0348470766765524!GO:0032989;cellular structure morphogenesis;0.0348470766765524!GO:0007265;Ras protein signal transduction;0.0350567363227235!GO:0007088;regulation of mitosis;0.0352857017887332!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0352866553964663!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0352866553964663!GO:0006979;response to oxidative stress;0.0355583730644367!GO:0000910;cytokinesis;0.0360278494660016!GO:0042770;DNA damage response, signal transduction;0.0361584746187448!GO:0030911;TPR domain binding;0.0361584746187448!GO:0006144;purine base metabolic process;0.0363932544301481!GO:0043241;protein complex disassembly;0.0368152171669007!GO:0030496;midbody;0.0369171939004542!GO:0043068;positive regulation of programmed cell death;0.0373704547891344!GO:0006984;ER-nuclear signaling pathway;0.0380697839711983!GO:0000209;protein polyubiquitination;0.038155999289711!GO:0030433;ER-associated protein catabolic process;0.0389874319513642!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0389874319513642!GO:0005595;collagen type XII;0.0393971622376008!GO:0045926;negative regulation of growth;0.0393971622376008!GO:0051540;metal cluster binding;0.0395220204939522!GO:0051536;iron-sulfur cluster binding;0.0395220204939522!GO:0010468;regulation of gene expression;0.0395220204939522!GO:0004003;ATP-dependent DNA helicase activity;0.0395220204939522!GO:0006376;mRNA splice site selection;0.0400783901728884!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0400783901728884!GO:0007160;cell-matrix adhesion;0.0406087331311156!GO:0046519;sphingoid metabolic process;0.041103254562994!GO:0006220;pyrimidine nucleotide metabolic process;0.0413534538554774!GO:0001666;response to hypoxia;0.0414990353321044!GO:0031589;cell-substrate adhesion;0.0414990353321044!GO:0007569;cell aging;0.0417806998499024!GO:0030508;thiol-disulfide exchange intermediate activity;0.0428356530282794!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0430610587918519!GO:0042168;heme metabolic process;0.0430610587918519!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0435064314196912!GO:0004527;exonuclease activity;0.0444990562067913!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0447040445316106!GO:0030518;steroid hormone receptor signaling pathway;0.0451333375031536!GO:0040029;regulation of gene expression, epigenetic;0.0457465498005972!GO:0005669;transcription factor TFIID complex;0.0458672533865586!GO:0006289;nucleotide-excision repair;0.0458672533865586!GO:0009225;nucleotide-sugar metabolic process;0.045938616229685!GO:0043414;biopolymer methylation;0.0460231470374321!GO:0008033;tRNA processing;0.0460231470374321!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0460231470374321!GO:0006739;NADP metabolic process;0.0463372378062166!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0466212710682059!GO:0005774;vacuolar membrane;0.046804815218323!GO:0000118;histone deacetylase complex;0.046804815218323!GO:0008287;protein serine/threonine phosphatase complex;0.0472160757223246!GO:0005856;cytoskeleton;0.0476473964092128!GO:0022408;negative regulation of cell-cell adhesion;0.0483367643663107!GO:0030119;AP-type membrane coat adaptor complex;0.0485476292686936!GO:0008652;amino acid biosynthetic process;0.0485476292686936!GO:0031272;regulation of pseudopodium formation;0.0485476292686936!GO:0031269;pseudopodium formation;0.0485476292686936!GO:0031344;regulation of cell projection organization and biogenesis;0.0485476292686936!GO:0031268;pseudopodium organization and biogenesis;0.0485476292686936!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0485476292686936!GO:0031274;positive regulation of pseudopodium formation;0.0485476292686936!GO:0001952;regulation of cell-matrix adhesion;0.0493433132184335!GO:0007017;microtubule-based process;0.049387363400936
|sample_id=10737
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=connective tissue
|top_motifs=HMGA1,2:1.79967016529;HBP1_HMGB_SSRP1_UBTF:1.61277082184;EVI1:1.51995185447;XBP1:1.49596590549;HIF1A:1.48200037787;FOXL1:1.43272513805;GZF1:1.3948627295;GLI1..3:1.36481632737;UFEwm:1.34193174869;HES1:1.33566145485;GCM1,2:1.32656452221;TFAP2B:1.1474062511;TFAP4:1.12538638581;HOX{A5,B5}:1.11858512404;MAFB:1.09923642633;HOX{A6,A7,B6,B7}:1.09222925709;NKX2-2,8:1.06775790342;TEAD1:1.05284664421;KLF4:1.04893015566;TFDP1:1.04037884392;XCPE1{core}:1.01825535816;MTE{core}:1.00165246647;TFAP2{A,C}:0.977592009139;TAL1_TCF{3,4,12}:0.975245784358;SRF:0.956292914175;PPARG:0.934755318678;ADNP_IRX_SIX_ZHX:0.916509345138;GFI1B:0.908145582913;MYBL2:0.884383791711;EN1,2:0.868719361183;TLX1..3_NFIC{dimer}:0.85454522994;FOXA2:0.842631619999;AIRE:0.806746703584;HAND1,2:0.804009923741;NR3C1:0.798808233065;GATA4:0.779093247421;POU5F1:0.761689106812;ESR1:0.752321298392;GTF2A1,2:0.748701964938;HSF1,2:0.746467010081;HMX1:0.722658888316;NKX3-1:0.721332481055;PAX3,7:0.720655706173;HOX{A4,D4}:0.714683903197;NR6A1:0.711804651891;SOX17:0.68292043113;IKZF1:0.682564670246;MZF1:0.680458564289;PAX1,9:0.680303719162;NKX3-2:0.674802720923;GTF2I:0.661344064893;TP53:0.650292391322;MAZ:0.646233702574;TFCP2:0.621733744269;NFATC1..3:0.620059603328;HIC1:0.594483449453;RXR{A,B,G}:0.577865952868;ZNF384:0.553103146824;HLF:0.536927290354;PAX8:0.52959292966;POU3F1..4:0.527617350645;PRDM1:0.526288650939;ALX4:0.496493138338;EGR1..3:0.396450179227;MTF1:0.386211078739;TBP:0.375636751466;EBF1:0.370340885119;POU1F1:0.366562704687;ZNF148:0.356910337006;PAX5:0.354243757686;ZBTB6:0.335749288265;RXRA_VDR{dimer}:0.328078142682;CDC5L:0.297633276903;ATF6:0.274382175836;E2F1..5:0.254909556373;SMAD1..7,9:0.252338721022;AHR_ARNT_ARNT2:0.247290100818;AR:0.204428277309;PATZ1:0.203334201939;PITX1..3:0.199480327632;MYB:0.193996291326;NANOG{mouse}:0.192641564368;POU6F1:0.188294205903;TBX4,5:0.17345056509;ZIC1..3:0.16536484196;ZNF238:0.16276935278;ZFP161:0.151274103079;ZBTB16:0.139559272722;TOPORS:0.137421968854;PAX4:0.107189141785;NFIX:0.0989019850761;NFE2L1:0.0804317630823;T:0.0747713014517;BREu{core}:0.0674329367168;LHX3,4:0.0671679889293;SPZ1:0.0478490477049;MED-1{core}:0.0427123977197;BACH2:0.00294063761263;ONECUT1,2:-0.0034820123413;RREB1:-0.0134062024777;STAT2,4,6:-0.0252822944201;MEF2{A,B,C,D}:-0.0301454311602;CREB1:-0.0378980631964;GFI1:-0.0416576873989;LEF1_TCF7_TCF7L1,2:-0.0551939480991;FOS_FOS{B,L1}_JUN{B,D}:-0.0622141230694;NFE2L2:-0.0833983808583;FOSL2:-0.105696977554;STAT5{A,B}:-0.114500535867;HNF1A:-0.118681237202;CEBPA,B_DDIT3:-0.125095815893;JUN:-0.130533450153;DMAP1_NCOR{1,2}_SMARC:-0.136274120578;FOXO1,3,4:-0.141200818318;ZNF143:-0.151251274989;FOXD3:-0.168708099305;NHLH1,2:-0.168922140561;ZNF423:-0.188060553469;REST:-0.212428614122;DBP:-0.219687620223;MYFfamily:-0.229713107815;TEF:-0.248773478883;SP1:-0.264274229037;NKX2-1,4:-0.266941981197;PAX6:-0.271803001588;VSX1,2:-0.280300143597;FOX{F1,F2,J1}:-0.282237726617;PAX2:-0.288233988783;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.288880936169;NKX2-3_NKX2-5:-0.307604372436;FOXP3:-0.323964935469;RUNX1..3:-0.326143448864;NR5A1,2:-0.34443563008;NFE2:-0.35011557839;NFKB1_REL_RELA:-0.359747268507;IRF1,2:-0.374016920237;bHLH_family:-0.381360521781;ELK1,4_GABP{A,B1}:-0.411160341428;FOX{I1,J2}:-0.434142811218;ATF4:-0.441394331621;IKZF2:-0.443265336816;CRX:-0.447397737804;FOX{D1,D2}:-0.455274584303;RFX1:-0.455931628389;SPI1:-0.461318308037;SOX5:-0.488275388006;NRF1:-0.502805095005;ARID5B:-0.508514073044;NFIL3:-0.516954180692;ETS1,2:-0.518261490571;OCT4_SOX2{dimer}:-0.52089675596;TGIF1:-0.535850671039;SOX2:-0.538240021211;EP300:-0.543711796272;YY1:-0.573181701029;ATF2:-0.590509402473;ATF5_CREB3:-0.60560347185;PRRX1,2:-0.621695465625;PDX1:-0.6299893037;SPIB:-0.637051539128;FOXN1:-0.637434144656;SOX{8,9,10}:-0.652753568859;FOXP1:-0.668634888315;POU2F1..3:-0.680128943355;ALX1:-0.690472909757;BPTF:-0.693046238468;SNAI1..3:-0.717775688367;CUX2:-0.734313446531;HNF4A_NR2F1,2:-0.781041361923;TLX2:-0.824708691918;NR1H4:-0.841358084952;ELF1,2,4:-0.848746713161;NFY{A,B,C}:-0.865369451842;IRF7:-0.890364101914;SREBF1,2:-0.891482563696;GATA6:-0.902789301738;ZEB1:-0.92536116407;FOXM1:-0.951622582179;FOXQ1:-0.981132612134;STAT1,3:-0.991428147554;ESRRA:-1.04902029593;HOXA9_MEIS1:-1.04992103428;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09520300802;NANOG:-1.1035716856;LMO2:-1.11012511303;RORA:-1.11509849107;CDX1,2,4:-1.20521295482;NKX6-1,2:-1.25715381365;RFX2..5_RFXANK_RFXAP:-1.38342211095;PBX1:-1.49420062243;MYOD1:-1.62295729426;RBPJ:-1.76459346217
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10737-110B8;search_select_hide=table117:FF:10737-110B8
}}
}}

Latest revision as of 15:02, 3 June 2020

Name:spindle cell sarcoma cell line:Hs 132.T
Species:Human (Homo sapiens)
Library ID:CNhs11857
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueconnective tissue
dev stageNA
sexmale
age49
cell typeunclassifiable
cell lineHs 132.T
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005299
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11857 CAGE DRX008012 DRR008884
Accession ID Hg19

Library idBAMCTSS
CNhs11857 DRZ000309 DRZ001694
Accession ID Hg38

Library idBAMCTSS
CNhs11857 DRZ011659 DRZ013044
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0915
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.129
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.873
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0941
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.114
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.267
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.184
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.223
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.458
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.0682
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.124
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.179
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.34
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.0682
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0266
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0337
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.151
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.267
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.225
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.608
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.34
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.882
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.91
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.797
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.785
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11857

Jaspar motifP-value
MA0002.20.114
MA0003.10.71
MA0004.10.0289
MA0006.10.191
MA0007.10.723
MA0009.10.521
MA0014.10.197
MA0017.10.0907
MA0018.20.00254
MA0019.10.98
MA0024.10.732
MA0025.10.0179
MA0027.10.97
MA0028.10.00136
MA0029.10.0798
MA0030.10.193
MA0031.10.033
MA0035.20.0106
MA0038.10.0604
MA0039.20.0305
MA0040.10.57
MA0041.10.507
MA0042.10.712
MA0043.16.1117e-4
MA0046.10.599
MA0047.20.54
MA0048.10.0233
MA0050.10.00919
MA0051.10.0149
MA0052.10.215
MA0055.10.728
MA0057.10.512
MA0058.14.27792e-4
MA0059.10.169
MA0060.11.19335e-6
MA0061.10.00356
MA0062.29.64526e-10
MA0065.20.00585
MA0066.10.843
MA0067.10.00861
MA0068.10.406
MA0069.10.309
MA0070.10.245
MA0071.10.592
MA0072.10.269
MA0073.10.922
MA0074.10.76
MA0076.11.16468e-5
MA0077.10.613
MA0078.10.89
MA0079.20.76
MA0080.24.47245e-8
MA0081.10.00191
MA0083.10.0266
MA0084.10.604
MA0087.10.932
MA0088.10.0821
MA0090.15.75917e-5
MA0091.10.828
MA0092.10.0713
MA0093.10.0235
MA0099.20.0711
MA0100.10.489
MA0101.10.00116
MA0102.20.0142
MA0103.17.57997e-4
MA0104.20.00215
MA0105.14.18663e-4
MA0106.10.452
MA0107.10.00583
MA0108.20.00162
MA0111.10.0894
MA0112.20.477
MA0113.10.924
MA0114.10.00654
MA0115.10.369
MA0116.10.0219
MA0117.10.412
MA0119.10.566
MA0122.10.193
MA0124.10.128
MA0125.10.128
MA0131.10.525
MA0135.10.512
MA0136.13.47696e-13
MA0137.20.11
MA0138.21
MA0139.10.0818
MA0140.10.0969
MA0141.10.324
MA0142.10.133
MA0143.10.797
MA0144.10.752
MA0145.10.779
MA0146.10.12
MA0147.10.0125
MA0148.10.272
MA0149.10.842
MA0150.10.0201
MA0152.10.063
MA0153.10.503
MA0154.10.049
MA0155.10.723
MA0156.13.46451e-8
MA0157.10.105
MA0159.10.291
MA0160.10.0781
MA0162.10.703
MA0163.10.0604
MA0164.10.722
MA0258.10.152
MA0259.10.223



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11857

Novel motifP-value
10.349
100.271
1000.166
1010.208
1020.299
1030.765
1040.889
1050.0786
1060.367
1070.0546
1080.29
1090.213
110.5
1100.262
1110.923
1120.84
1130.0173
1140.482
1150.0513
1160.0909
1170.115
1180.119
1190.922
120.334
1200.737
1210.662
1220.411
1230.0045
1240.0871
1250.499
1260.598
1270.746
1280.682
1290.415
130.163
1300.789
1310.93
1320.44
1330.734
1340.321
1350.83
1360.614
1370.347
1380.807
1390.456
140.221
1400.216
1410.112
1420.91
1430.973
1440.721
1450.78
1460.224
1470.00787
1480.298
1490.239
150.295
1500.101
1510.774
1520.0572
1530.561
1540.205
1550.0566
1560.691
1570.147
1580.0168
1590.498
160.152
1600.403
1610.338
1620.936
1630.309
1640.634
1650.165
1660.0769
1670.356
1680.527
1690.918
170.636
180.183
190.405
20.479
200.483
210.365
220.883
230.326
240.0918
250.241
260.843
270.478
280.289
290.307
30.424
300.569
310.868
329.69511e-10
330.163
340.747
350.0576
360.0043
370.584
380.491
390.431
40.648
400.0208
410.38
420.312
430.612
440.779
450.805
460.9
470.145
480.213
490.432
50.744
500.643
510.375
520.728
530.0951
540.994
550.499
560.91
570.865
580.162
590.688
60.739
600.907
610.137
620.372
630.836
640.233
650.848
660.885
670.422
680.324
690.859
70.13
700.839
710.0633
720.31
730.263
740.193
750.183
760.981
770.373
780.268
790.0137
80.833
800.336
810.822
820.25
830.131
840.456
850.746
860.955
870.629
880.929
890.159
90.981
900.749
910.613
920.368
930.974
940.722
950.545
960.92
970.366
980.214
990.0357



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11857


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
4235 (spindle cell sarcoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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