FF:10759-110E3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005880 | ||
|accession_numbers=CAGE;DRX007929;DRR008801;DRZ000226;DRZ001611 | |accession_numbers=CAGE;DRX007929;DRR008801;DRZ000226;DRZ001611;DRZ011576;DRZ012961 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:66218598..66218645,+!p2@HMGA2!2.00!435.56!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.98!245.59!HMGA2;;chr3:189507432..189507459,+!p1@TP63!1.89!76.86!TP63;;chr12:66218212..66218244,+!p5@HMGA2!1.73!75.24!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!65.86!FOXQ1;;chr3:189349162..189349207,+!p2@TP63!1.61!39.37!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.99!TFAP2A;;chr14:29235961..29236008,+!p1@FOXG1!1.52!31.99!FOXG1;;chr12:66218183..66218209,+!p4@HMGA2!1.44!50.62!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.25!SOX7;;chr12:66218836..66218888,+!p1@HMGA2!1.41!220.34!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.39!34.99!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.39!23.62!HES2;;chr2:176969228..176969260,+!p1@HOXD11!1.37!22.50!HOXD11;;chr5:2751762..2751784,-!p1@IRX2!1.35!21.62!IRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.37!ZBED1;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.87!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.00!TFAP2A;;chr2:5832508..5832524,+!p1@SOX11!1.23!16.12!SOX11;;chr20:22564895..22564910,-!p1@FOXA2!1.21!15.12!FOXA2;;chr12:66218378..66218401,+!p6@HMGA2!1.19!22.62!HMGA2;;chr6:10412392..10412409,-!p4@TFAP2A!1.19!16.62!TFAP2A;;chr12:66218443..66218461,+!p8@HMGA2!1.17!17.75!HMGA2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.17!13.87!ZNF676;;chr7:27153454..27153469,-!p2@HOXA3!1.17!13.75!HOXA3;;chr3:21792585..21792625,-!p2@ZNF385D!1.16!15.00!ZNF385D;;chr3:21792682..21792720,-!p1@ZNF385D!1.15!13.12!ZNF385D;;chr9:14314131..14314147,-!p2@NFIB!1.12!67.24!NFIB;;chr12:66218469..66218477,+!p16@HMGA2!1.12!12.25!HMGA2;;chr1:50889103..50889145,-!p1@DMRTA2!1.12!12.12!DMRTA2;;chr3:181429704..181429722,+!p1@SOX2!1.10!11.50!SOX2;;chr12:66218904..66218913,+!p11@HMGA2!1.09!11.37!HMGA2;;chr19:22817119..22817145,+!p1@ZNF492!1.08!18.37!ZNF492;;chr17:41623692..41623715,-!p1@ETV4!1.07!45.87!ETV4;;chr20:42295745..42295765,+!p1@MYBL2!1.06!173.47!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!1.06!62.12!MYBL2;;chr10:48355030..48355090,+!p1@ZNF488!1.06!13.50!ZNF488;;chr6:10412576..10412599,-!p5@TFAP2A!1.06!10.50!TFAP2A;;chr19:22193731..22193751,-!p1@ZNF208!1.06!10.50!ZNF208;;chr22:19748231..19748317,+!p1@TBX1!1.06!10.50!TBX1;;chr7:26191809..26191890,+!p1@NFE2L3!1.04!50.49!NFE2L3;;chr20:50721803..50721857,-!p2@ZFP64!1.04!15.87!ZFP64;;chr2:176969179..176969226,+!p2@HOXD11!1.04!9.87!HOXD11;;chr17:70117153..70117174,+!p1@SOX9!1.01!96.48!SOX9;;chr9:14314106..14314119,-!p5@NFIB!0.98!15.62!NFIB;;chr12:66218420..66218439,+!p12@HMGA2!0.98!8.62!HMGA2;;chr5:134369879..134369898,-!p2@PITX1!0.98!8.62!PITX1;;chr2:46524897..46524911,+!p2@EPAS1!0.97!24.00!EPAS1;;chr7:42276787..42276815,-!p1@GLI3!0.97!22.62!GLI3;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.50!FOXC2;;chr3:169381420..169381535,-!p1@MECOM!0.96!9.50!MECOM;;chr9:1050331..1050363,+!p1@DMRT2!0.95!7.87!DMRT2;;chr19:22605136..22605154,-!p1@ZNF98!0.95!7.87!ZNF98;;chr3:21792631..21792665,-!p3@ZNF385D!0.94!7.75!ZNF385D;;chr19:9609272..9609297,-!p1@ZNF560!0.92!7.37!ZNF560;;chr17:41277372..41277418,-!p1@BRCA1!0.91!27.25!BRCA1;;chr3:181429741..181429767,+!p2@SOX2!0.90!7.00!SOX2;;chr12:66357214..66357233,+!p13@HMGA2!0.90!6.87!HMGA2;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.75!PAX9;;chr17:7492684..7492778,-!p2@SOX15!0.86!13.62!SOX15;;chr8:106330656..106330684,+!p1@ZFPM2!0.85!16.62!ZFPM2;;chr14:29236269..29236285,+!p3@FOXG1!0.85!6.00!FOXG1;;chr19:23433144..23433204,-!p1@ZNF724P!0.84!28.00!ZNF724P;;chr10:8095593..8095625,+!p3@GATA3!0.84!7.12!GATA3;;chr12:66358080..66358094,+!p15@HMGA2!0.84!5.87!HMGA2;;chr3:189507460..189507471,+!p3@TP63!0.84!5.87!TP63;;chr5:2751785..2751808,-!p2@IRX2!0.83!5.75!IRX2;;chr12:66218923..66218934,+!p14@HMGA2!0.82!5.62!HMGA2;;chr7:42276822..42276895,-!p2@GLI3!0.81!17.37!GLI3;;chr19:22235279..22235301,+!p1@ZNF257!0.80!10.62!ZNF257;;chr3:147111198..147111225,+!p4@ZIC1!0.80!5.25!ZIC1;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.37!FOXF2;;chr12:66218152..66218174,+!p10@HMGA2!0.79!5.62!HMGA2;;chr7:156803329..156803362,-!p1@MNX1!0.79!5.12!MNX1;;chr12:125002827..125002855,-!p5@NCOR2!0.78!7.50!NCOR2;;chr8:11561684..11561751,+!p1@GATA4!0.78!5.00!GATA4;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.75!RUNX1;;chr19:22034809..22034878,-!p2@ZNF43!0.77!18.62!ZNF43;;chr17:46687959..46688007,-!p2@HOXB7!0.77!7.00!HOXB7;;chr18:55102598..55102623,+!p1@ONECUT2!0.77!4.87!ONECUT2;;chr9:14180778..14180808,-!p15@NFIB!0.77!4.87!NFIB;;chr9:14314066..14314075,-!p11@NFIB!0.77!4.87!NFIB;;chr3:189348969..189349018,+!p4@TP63!0.77!4.87!TP63;;chr19:22605097..22605121,-!p2@ZNF98!0.76!4.75!ZNF98;;chr16:29818199..29818216,+!p11@MAZ!0.75!8.00!MAZ;;chr2:122042770..122042785,-!p1@TFCP2L1!0.75!4.62!TFCP2L1;;chr5:133450365..133450444,+!p1@TCF7!0.74!22.75!TCF7;;chr3:71630980..71631110,-!p3@FOXP1!0.74!17.00!FOXP1;;chr17:41622765..41622821,-!p2@ETV4!0.74!7.25!ETV4;;chr20:22565185..22565223,-!p3@FOXA2!0.74!4.50!FOXA2;;chr9:14314566..14314618,-!p1@NFIB!0.72!57.49!NFIB;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.37!FOSL1;;chr9:16705069..16705086,-!p3@BNC2!0.72!4.25!BNC2;;chr12:80084737..80084763,-!p3@PAWR!0.71!17.00!PAWR;;chr20:32274179..32274213,-!p1@E2F1!0.69!29.50!E2F1;;chr16:29818160..29818188,+!p6@MAZ!0.68!20.25!MAZ;;chr17:35294075..35294102,+!p1@ENST00000559335!0.68!3.75!LHX1;;chr6:10415484..10415508,-!p3@TFAP2A!0.68!3.75!TFAP2A;;chr14:29236169..29236216,+!p6@FOXG1!0.68!3.75!FOXG1;;chr12:66218003..66218018,+!p9@HMGA2!0.67!4.62!HMGA2;;chr19:2867325..2867348,+!p1@ZNF556!0.67!3.62!ZNF556;;chr20:49547691..49547724,-!p2@ADNP!0.66!25.75!ADNP;;chr19:20188776..20188826,+!p1@ZNF90!0.66!10.75!ZNF90;;chr1:120190786..120190915,-!p1@ZNF697!0.65!29.25!ZNF697;;chr19:20011775..20011800,+!p2@ZNF93!0.65!6.75!ZNF93;;chr17:41623009..41623053,-!p4@ETV4!0.65!6.00!ETV4;;chr12:125002861..125002894,-!p7@NCOR2!0.64!5.37!NCOR2;;chr20:55204351..55204377,+!p1@TFAP2C!0.64!4.50!TFAP2C;;chr9:77112244..77112262,+!p1@RORB!0.64!3.87!RORB;;chr21:38071430..38071456,+!p1@SIM2!0.64!3.37!SIM2;;chr12:85673977..85674015,+!p1@ALX1!0.64!3.37!ALX1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.49!E2F7;;chr12:2986206..2986258,-!p2@FOXM1!0.63!23.12!FOXM1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.63!17.37!TAL1;;chr6:20402102..20402152,+!p1@E2F3!0.63!15.62!E2F3;;chr8:67525443..67525459,-!p2@MYBL1!0.63!5.25!MYBL1;;chr3:71355163..71355209,-!p5@FOXP1!0.63!4.75!FOXP1;;chr19:23299814..23299844,+!p1@ZNF730!0.63!4.12!ZNF730;;chr7:27196267..27196311,-!p1@HOXA7!0.63!3.25!HOXA7;;chr14:74256787..74256858,-!p6@C14orf43!0.63!3.25!C14orf43;;chr8:80679993..80680011,-!p1@HEY1!0.62!4.87!HEY1;;chr16:54320101..54320125,-!p4@IRX3!0.62!4.75!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!0.62!3.12!ONECUT2;;chr7:63505799..63505904,+!p1@ZNF727!0.62!3.12!ZNF727;;chr7:96654026..96654061,-!p2@DLX5!0.62!3.12!DLX5;;chr2:5832493..5832507,+!p2@SOX11!0.62!3.12!SOX11;;chr13:79177703..79177729,-!p2@POU4F1!0.62!3.12!POU4F1;;chr1:50889155..50889173,-!p2@DMRTA2!0.62!3.12!DMRTA2;;chr13:73633131..73633149,+!p1@KLF5!0.61!38.99!KLF5;;chr7:148581327..148581347,-!p2@EZH2!0.61!12.25!EZH2;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.87!MYBL1;;chr1:164528687..164528711,+!p6@PBX1!0.61!3.75!PBX1;;chr17:41623667..41623682,-!p8@ETV4!0.61!3.37!ETV4;;chr6:34204921..34204939,+!p3@HMGA1!0.60!109.23!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.60!36.37!FOXM1;;chr7:27142290..27142310,-!p1@HOXA2!0.60!3.00!HOXA2;;chr2:172949484..172949522,+!p1@DLX1!0.60!3.00!DLX1;;chr19:11071685..11071798,+!p1@SMARCA4!0.59!98.98!SMARCA4;;chr17:41623259..41623278,-!p7@ETV4!0.59!3.50!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.59!2.87!HOXB6;;chr18:53089453..53089482,-!p11@TCF4!0.59!2.87!TCF4;;chr19:1753498..1753519,+!p1@ONECUT3!0.59!2.87!ONECUT3;;chr2:63277948..63277974,+!p1@OTX1!0.59!2.87!OTX1;;chr3:69915385..69915438,+!p3@MITF!0.59!2.87!MITF;;chr6:10412477..10412490,-!p10@TFAP2A!0.59!2.87!TFAP2A;;chr2:101436564..101436647,+!p1@NPAS2!0.58!71.11!NPAS2;;chr7:64126503..64126528,+!p1@ZNF107!0.58!24.12!ZNF107;;chr7:64126535..64126559,+!p2@ZNF107!0.58!6.87!ZNF107;;chr18:19749517..19749531,+!p3@GATA6!0.58!5.62!GATA6;;chr15:80696703..80696754,+!p1@ARNT2!0.58!4.00!ARNT2;;chr20:50179368..50179392,-!p2@NFATC2!0.58!3.87!NFATC2;;chr19:42759266..42759290,-!p1@ERF!0.57!108.61!ERF;;chr19:20278012..20278034,+!p1@ZNF486!0.57!27.87!ZNF486;;chr19:21106049..21106072,+!p1@ZNF85!0.57!18.12!ZNF85;;chr19:20959098..20959117,+!p1@ZNF66P!0.57!13.62!ZNF66P;;chr12:27485762..27485776,+!p3@ARNTL2!0.57!8.50!ARNTL2;;chr5:150284532..150284549,-!p1@ZNF300!0.57!6.37!ZNF300;;chr19:10305581..10305646,-!p1@DNMT1!0.56!114.36!DNMT1;;chr11:47236584..47236679,+!p1@DDB2!0.56!35.99!DDB2;;chr9:4300050..4300118,-!p1@GLIS3!0.56!21.12!GLIS3;;chr17:17726907..17726958,-!p2@SREBF1!0.56!20.25!SREBF1;;chr17:56065729..56065781,-!p2@VEZF1!0.56!13.62!VEZF1;;chr20:49547593..49547611,-!p3@ADNP!0.56!10.50!ADNP;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.25!ETV4;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.12!SATB2;;chr2:176969124..176969155,+!p5@HOXD11!0.56!2.62!HOXD11;;chr1:3607228..3607250,+!p8@TP73!0.56!2.62!TP73;;chr11:16629261..16629284,-!p1@SOX6!0.56!2.62!SOX6;;chr13:79177674..79177701,-!p1@POU4F1!0.56!2.62!POU4F1;;chr2:60780753..60780800,-!p1@BCL11A!0.55!15.50!BCL11A;;chr12:27485823..27485868,+!p2@ARNTL2!0.55!12.62!ARNTL2;;chr18:19749541..19749557,+!p1@GATA6!0.55!9.50!GATA6;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.25!BCL11A;;chr19:21106081..21106115,+!p2@ZNF85!0.55!8.87!ZNF85;;chr8:116681409..116681431,-!p2@TRPS1!0.55!8.37!TRPS1;;chr1:935398..935465,-!p2@HES4!0.55!6.12!HES4;;chr19:21265028..21265052,+!p2@ZNF714!0.55!5.25!ZNF714;;chr7:148581360..148581425,-!p1@EZH2!0.54!15.00!EZH2;;chr19:38720294..38720348,-!p1@DPF1!0.54!3.25!DPF1;;chr3:21792790..21792824,-!p4@ZNF385D!0.54!2.50!ZNF385D;;chr16:52581025..52581072,-!p1@TOX3!0.54!2.50!TOX3;;chr19:23941680..23941704,-!p1@ZNF681!0.53!8.37!ZNF681;;chr9:4299552..4299598,-!p5@GLIS3!0.53!4.62!GLIS3;;chr3:157823517..157823562,-!p1@SHOX2!0.53!2.62!SHOX2;;chr3:147111231..147111281,+!p3@ZIC1!0.53!2.37!ZIC1;;chr6:1312155..1312187,+!p2@FOXQ1!0.53!2.37!FOXQ1;;chr1:3569072..3569093,+!p1@TP73!0.53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| |expression_enrichment_score=chr12:66218598..66218645,+!p2@HMGA2!2.00!435.56!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.98!245.59!HMGA2;;chr3:189507432..189507459,+!p1@TP63!1.89!76.86!TP63;;chr12:66218212..66218244,+!p5@HMGA2!1.73!75.24!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.62!65.86!FOXQ1;;chr3:189349162..189349207,+!p2@TP63!1.61!39.37!TP63;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.99!TFAP2A;;chr14:29235961..29236008,+!p1@FOXG1!1.52!31.99!FOXG1;;chr12:66218183..66218209,+!p4@HMGA2!1.44!50.62!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.25!SOX7;;chr12:66218836..66218888,+!p1@HMGA2!1.41!220.34!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.39!34.99!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.39!23.62!HES2;;chr2:176969228..176969260,+!p1@HOXD11!1.37!22.50!HOXD11;;chr5:2751762..2751784,-!p1@IRX2!1.35!21.62!IRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.37!ZBED1;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.87!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.00!TFAP2A;;chr2:5832508..5832524,+!p1@SOX11!1.23!16.12!SOX11;;chr20:22564895..22564910,-!p1@FOXA2!1.21!15.12!FOXA2;;chr12:66218378..66218401,+!p6@HMGA2!1.19!22.62!HMGA2;;chr6:10412392..10412409,-!p4@TFAP2A!1.19!16.62!TFAP2A;;chr12:66218443..66218461,+!p8@HMGA2!1.17!17.75!HMGA2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.17!13.87!ZNF676;;chr7:27153454..27153469,-!p2@HOXA3!1.17!13.75!HOXA3;;chr3:21792585..21792625,-!p2@ZNF385D!1.16!15.00!ZNF385D;;chr3:21792682..21792720,-!p1@ZNF385D!1.15!13.12!ZNF385D;;chr9:14314131..14314147,-!p2@NFIB!1.12!67.24!NFIB;;chr12:66218469..66218477,+!p16@HMGA2!1.12!12.25!HMGA2;;chr1:50889103..50889145,-!p1@DMRTA2!1.12!12.12!DMRTA2;;chr3:181429704..181429722,+!p1@SOX2!1.10!11.50!SOX2;;chr12:66218904..66218913,+!p11@HMGA2!1.09!11.37!HMGA2;;chr19:22817119..22817145,+!p1@ZNF492!1.08!18.37!ZNF492;;chr17:41623692..41623715,-!p1@ETV4!1.07!45.87!ETV4;;chr20:42295745..42295765,+!p1@MYBL2!1.06!173.47!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!1.06!62.12!MYBL2;;chr10:48355030..48355090,+!p1@ZNF488!1.06!13.50!ZNF488;;chr6:10412576..10412599,-!p5@TFAP2A!1.06!10.50!TFAP2A;;chr19:22193731..22193751,-!p1@ZNF208!1.06!10.50!ZNF208;;chr22:19748231..19748317,+!p1@TBX1!1.06!10.50!TBX1;;chr7:26191809..26191890,+!p1@NFE2L3!1.04!50.49!NFE2L3;;chr20:50721803..50721857,-!p2@ZFP64!1.04!15.87!ZFP64;;chr2:176969179..176969226,+!p2@HOXD11!1.04!9.87!HOXD11;;chr17:70117153..70117174,+!p1@SOX9!1.01!96.48!SOX9;;chr9:14314106..14314119,-!p5@NFIB!0.98!15.62!NFIB;;chr12:66218420..66218439,+!p12@HMGA2!0.98!8.62!HMGA2;;chr5:134369879..134369898,-!p2@PITX1!0.98!8.62!PITX1;;chr2:46524897..46524911,+!p2@EPAS1!0.97!24.00!EPAS1;;chr7:42276787..42276815,-!p1@GLI3!0.97!22.62!GLI3;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.50!FOXC2;;chr3:169381420..169381535,-!p1@MECOM!0.96!9.50!MECOM;;chr9:1050331..1050363,+!p1@DMRT2!0.95!7.87!DMRT2;;chr19:22605136..22605154,-!p1@ZNF98!0.95!7.87!ZNF98;;chr3:21792631..21792665,-!p3@ZNF385D!0.94!7.75!ZNF385D;;chr19:9609272..9609297,-!p1@ZNF560!0.92!7.37!ZNF560;;chr17:41277372..41277418,-!p1@BRCA1!0.91!27.25!BRCA1;;chr3:181429741..181429767,+!p2@SOX2!0.90!7.00!SOX2;;chr12:66357214..66357233,+!p13@HMGA2!0.90!6.87!HMGA2;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.75!PAX9;;chr17:7492684..7492778,-!p2@SOX15!0.86!13.62!SOX15;;chr8:106330656..106330684,+!p1@ZFPM2!0.85!16.62!ZFPM2;;chr14:29236269..29236285,+!p3@FOXG1!0.85!6.00!FOXG1;;chr19:23433144..23433204,-!p1@ZNF724P!0.84!28.00!ZNF724P;;chr10:8095593..8095625,+!p3@GATA3!0.84!7.12!GATA3;;chr12:66358080..66358094,+!p15@HMGA2!0.84!5.87!HMGA2;;chr3:189507460..189507471,+!p3@TP63!0.84!5.87!TP63;;chr5:2751785..2751808,-!p2@IRX2!0.83!5.75!IRX2;;chr12:66218923..66218934,+!p14@HMGA2!0.82!5.62!HMGA2;;chr7:42276822..42276895,-!p2@GLI3!0.81!17.37!GLI3;;chr19:22235279..22235301,+!p1@ZNF257!0.80!10.62!ZNF257;;chr3:147111198..147111225,+!p4@ZIC1!0.80!5.25!ZIC1;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.37!FOXF2;;chr12:66218152..66218174,+!p10@HMGA2!0.79!5.62!HMGA2;;chr7:156803329..156803362,-!p1@MNX1!0.79!5.12!MNX1;;chr12:125002827..125002855,-!p5@NCOR2!0.78!7.50!NCOR2;;chr8:11561684..11561751,+!p1@GATA4!0.78!5.00!GATA4;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.75!RUNX1;;chr19:22034809..22034878,-!p2@ZNF43!0.77!18.62!ZNF43;;chr17:46687959..46688007,-!p2@HOXB7!0.77!7.00!HOXB7;;chr18:55102598..55102623,+!p1@ONECUT2!0.77!4.87!ONECUT2;;chr9:14180778..14180808,-!p15@NFIB!0.77!4.87!NFIB;;chr9:14314066..14314075,-!p11@NFIB!0.77!4.87!NFIB;;chr3:189348969..189349018,+!p4@TP63!0.77!4.87!TP63;;chr19:22605097..22605121,-!p2@ZNF98!0.76!4.75!ZNF98;;chr16:29818199..29818216,+!p11@MAZ!0.75!8.00!MAZ;;chr2:122042770..122042785,-!p1@TFCP2L1!0.75!4.62!TFCP2L1;;chr5:133450365..133450444,+!p1@TCF7!0.74!22.75!TCF7;;chr3:71630980..71631110,-!p3@FOXP1!0.74!17.00!FOXP1;;chr17:41622765..41622821,-!p2@ETV4!0.74!7.25!ETV4;;chr20:22565185..22565223,-!p3@FOXA2!0.74!4.50!FOXA2;;chr9:14314566..14314618,-!p1@NFIB!0.72!57.49!NFIB;;chr11:65667884..65667895,-!p2@FOSL1!0.72!18.37!FOSL1;;chr9:16705069..16705086,-!p3@BNC2!0.72!4.25!BNC2;;chr12:80084737..80084763,-!p3@PAWR!0.71!17.00!PAWR;;chr20:32274179..32274213,-!p1@E2F1!0.69!29.50!E2F1;;chr16:29818160..29818188,+!p6@MAZ!0.68!20.25!MAZ;;chr17:35294075..35294102,+!p1@ENST00000559335!0.68!3.75!LHX1;;chr6:10415484..10415508,-!p3@TFAP2A!0.68!3.75!TFAP2A;;chr14:29236169..29236216,+!p6@FOXG1!0.68!3.75!FOXG1;;chr12:66218003..66218018,+!p9@HMGA2!0.67!4.62!HMGA2;;chr19:2867325..2867348,+!p1@ZNF556!0.67!3.62!ZNF556;;chr20:49547691..49547724,-!p2@ADNP!0.66!25.75!ADNP;;chr19:20188776..20188826,+!p1@ZNF90!0.66!10.75!ZNF90;;chr1:120190786..120190915,-!p1@ZNF697!0.65!29.25!ZNF697;;chr19:20011775..20011800,+!p2@ZNF93!0.65!6.75!ZNF93;;chr17:41623009..41623053,-!p4@ETV4!0.65!6.00!ETV4;;chr12:125002861..125002894,-!p7@NCOR2!0.64!5.37!NCOR2;;chr20:55204351..55204377,+!p1@TFAP2C!0.64!4.50!TFAP2C;;chr9:77112244..77112262,+!p1@RORB!0.64!3.87!RORB;;chr21:38071430..38071456,+!p1@SIM2!0.64!3.37!SIM2;;chr12:85673977..85674015,+!p1@ALX1!0.64!3.37!ALX1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.49!E2F7;;chr12:2986206..2986258,-!p2@FOXM1!0.63!23.12!FOXM1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.63!17.37!TAL1;;chr6:20402102..20402152,+!p1@E2F3!0.63!15.62!E2F3;;chr8:67525443..67525459,-!p2@MYBL1!0.63!5.25!MYBL1;;chr3:71355163..71355209,-!p5@FOXP1!0.63!4.75!FOXP1;;chr19:23299814..23299844,+!p1@ZNF730!0.63!4.12!ZNF730;;chr7:27196267..27196311,-!p1@HOXA7!0.63!3.25!HOXA7;;chr14:74256787..74256858,-!p6@C14orf43!0.63!3.25!C14orf43;;chr8:80679993..80680011,-!p1@HEY1!0.62!4.87!HEY1;;chr16:54320101..54320125,-!p4@IRX3!0.62!4.75!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!0.62!3.12!ONECUT2;;chr7:63505799..63505904,+!p1@ZNF727!0.62!3.12!ZNF727;;chr7:96654026..96654061,-!p2@DLX5!0.62!3.12!DLX5;;chr2:5832493..5832507,+!p2@SOX11!0.62!3.12!SOX11;;chr13:79177703..79177729,-!p2@POU4F1!0.62!3.12!POU4F1;;chr1:50889155..50889173,-!p2@DMRTA2!0.62!3.12!DMRTA2;;chr13:73633131..73633149,+!p1@KLF5!0.61!38.99!KLF5;;chr7:148581327..148581347,-!p2@EZH2!0.61!12.25!EZH2;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.87!MYBL1;;chr1:164528687..164528711,+!p6@PBX1!0.61!3.75!PBX1;;chr17:41623667..41623682,-!p8@ETV4!0.61!3.37!ETV4;;chr6:34204921..34204939,+!p3@HMGA1!0.60!109.23!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.60!36.37!FOXM1;;chr7:27142290..27142310,-!p1@HOXA2!0.60!3.00!HOXA2;;chr2:172949484..172949522,+!p1@DLX1!0.60!3.00!DLX1;;chr19:11071685..11071798,+!p1@SMARCA4!0.59!98.98!SMARCA4;;chr17:41623259..41623278,-!p7@ETV4!0.59!3.50!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.59!2.87!HOXB6;;chr18:53089453..53089482,-!p11@TCF4!0.59!2.87!TCF4;;chr19:1753498..1753519,+!p1@ONECUT3!0.59!2.87!ONECUT3;;chr2:63277948..63277974,+!p1@OTX1!0.59!2.87!OTX1;;chr3:69915385..69915438,+!p3@MITF!0.59!2.87!MITF;;chr6:10412477..10412490,-!p10@TFAP2A!0.59!2.87!TFAP2A;;chr2:101436564..101436647,+!p1@NPAS2!0.58!71.11!NPAS2;;chr7:64126503..64126528,+!p1@ZNF107!0.58!24.12!ZNF107;;chr7:64126535..64126559,+!p2@ZNF107!0.58!6.87!ZNF107;;chr18:19749517..19749531,+!p3@GATA6!0.58!5.62!GATA6;;chr15:80696703..80696754,+!p1@ARNT2!0.58!4.00!ARNT2;;chr20:50179368..50179392,-!p2@NFATC2!0.58!3.87!NFATC2;;chr19:42759266..42759290,-!p1@ERF!0.57!108.61!ERF;;chr19:20278012..20278034,+!p1@ZNF486!0.57!27.87!ZNF486;;chr19:21106049..21106072,+!p1@ZNF85!0.57!18.12!ZNF85;;chr19:20959098..20959117,+!p1@ZNF66P!0.57!13.62!ZNF66P;;chr12:27485762..27485776,+!p3@ARNTL2!0.57!8.50!ARNTL2;;chr5:150284532..150284549,-!p1@ZNF300!0.57!6.37!ZNF300;;chr19:10305581..10305646,-!p1@DNMT1!0.56!114.36!DNMT1;;chr11:47236584..47236679,+!p1@DDB2!0.56!35.99!DDB2;;chr9:4300050..4300118,-!p1@GLIS3!0.56!21.12!GLIS3;;chr17:17726907..17726958,-!p2@SREBF1!0.56!20.25!SREBF1;;chr17:56065729..56065781,-!p2@VEZF1!0.56!13.62!VEZF1;;chr20:49547593..49547611,-!p3@ADNP!0.56!10.50!ADNP;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.25!ETV4;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.12!SATB2;;chr2:176969124..176969155,+!p5@HOXD11!0.56!2.62!HOXD11;;chr1:3607228..3607250,+!p8@TP73!0.56!2.62!TP73;;chr11:16629261..16629284,-!p1@SOX6!0.56!2.62!SOX6;;chr13:79177674..79177701,-!p1@POU4F1!0.56!2.62!POU4F1;;chr2:60780753..60780800,-!p1@BCL11A!0.55!15.50!BCL11A;;chr12:27485823..27485868,+!p2@ARNTL2!0.55!12.62!ARNTL2;;chr18:19749541..19749557,+!p1@GATA6!0.55!9.50!GATA6;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.25!BCL11A;;chr19:21106081..21106115,+!p2@ZNF85!0.55!8.87!ZNF85;;chr8:116681409..116681431,-!p2@TRPS1!0.55!8.37!TRPS1;;chr1:935398..935465,-!p2@HES4!0.55!6.12!HES4;;chr19:21265028..21265052,+!p2@ZNF714!0.55!5.25!ZNF714;;chr7:148581360..148581425,-!p1@EZH2!0.54!15.00!EZH2;;chr19:38720294..38720348,-!p1@DPF1!0.54!3.25!DPF1;;chr3:21792790..21792824,-!p4@ZNF385D!0.54!2.50!ZNF385D;;chr16:52581025..52581072,-!p1@TOX3!0.54!2.50!TOX3;;chr19:23941680..23941704,-!p1@ZNF681!0.53!8.37!ZNF681;;chr9:4299552..4299598,-!p5@GLIS3!0.53!4.62!GLIS3;;chr3:157823517..157823562,-!p1@SHOX2!0.53!2.62!SHOX2;;chr3:147111231..147111281,+!p3@ZIC1!0.53!2.37!ZIC1;;chr6:1312155..1312187,+!p2@FOXQ1!0.53!2.37!FOXQ1;;chr1:3569072..3569093,+!p1@TP73!0.53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| ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10759-110E3 | |id=FF:10759-110E3 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101359 | |is_a=EFO:0002091;;FF:0000210;;FF:0101359 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11861 | |library_id=CNhs11861 | ||
| | |library_id_phase_based=2:CNhs11861 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10759 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10759 | |||
|name=medulloblastoma cell line:ONS-76 | |name=medulloblastoma cell line:ONS-76 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11861,LSID830,release010,COMPLETED | |profile_hcage=CNhs11861,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 64: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.10E+05 | ||
|rna_weight_ug=95.75325 | |rna_weight_ug=95.75325 | ||
|sample_age=2 | |sample_age=2 | ||
Line 89: | Line 100: | ||
|top_motifs=TFDP1:1.37979250874;TP53:1.33953135227;NFY{A,B,C}:1.33696072607;VSX1,2:1.32605012802;E2F1..5:1.21820152281;PAX1,9:1.1412822604;ONECUT1,2:1.11645726218;ELK1,4_GABP{A,B1}:1.11481453835;GFI1:1.09878727023;POU2F1..3:1.07824896646;SOX17:0.997966245799;GTF2A1,2:0.98488188704;ADNP_IRX_SIX_ZHX:0.949099128625;SOX2:0.914912368178;HBP1_HMGB_SSRP1_UBTF:0.906264341272;ZNF143:0.853414791326;SOX{8,9,10}:0.802579509314;POU6F1:0.780097509888;POU5F1:0.747125379267;CDC5L:0.741418273402;POU1F1:0.733192909438;PAX6:0.698196715898;NRF1:0.677630319993;NR6A1:0.667237432587;TEF:0.663622040804;TLX1..3_NFIC{dimer}:0.655061476897;BREu{core}:0.635593017123;ZIC1..3:0.622477196392;PITX1..3:0.621934987348;bHLH_family:0.620725638348;MYB:0.598533010191;ZFP161:0.558361038613;NR5A1,2:0.539602042061;FOXM1:0.492564545473;SP1:0.489911879621;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.48068647592;TFAP2B:0.472911193105;HIC1:0.4612967837;ALX1:0.454502776783;NANOG:0.453205340624;NKX6-1,2:0.425918307144;PAX8:0.422898457928;XCPE1{core}:0.42008111107;LEF1_TCF7_TCF7L1,2:0.399006646718;NR3C1:0.387175287176;SPZ1:0.372272311292;CRX:0.354240717096;RBPJ:0.341028049202;FOXL1:0.328132572975;TEAD1:0.317867890627;ZBTB16:0.313544890682;PBX1:0.305589382534;HOX{A4,D4}:0.302721762909;EGR1..3:0.302669778574;EN1,2:0.294319784696;FOX{F1,F2,J1}:0.289383565625;NKX3-1:0.278184524987;OCT4_SOX2{dimer}:0.264686420029;FOXQ1:0.263257128395;PPARG:0.261450445966;AIRE:0.255123848234;ELF1,2,4:0.231629509089;STAT5{A,B}:0.222452259313;FOS_FOS{B,L1}_JUN{B,D}:0.202178241794;MTE{core}:0.201594632967;NKX2-3_NKX2-5:0.200097037283;CDX1,2,4:0.181534288621;YY1:0.172713044298;MTF1:0.164668154091;FOX{I1,J2}:0.159594410434;GATA4:0.154628456146;PRRX1,2:0.145530030098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.135258537307;NKX2-1,4:0.125150521116;CUX2:0.116276744588;PATZ1:0.109417924524;FOXA2:0.0793582538713;TBX4,5:0.0586604566466;NR1H4:0.0584027610839;ARID5B:0.0501690004035;BACH2:0.0493431681868;POU3F1..4:0.0459170471277;ZNF384:0.0301291660158;IKZF1:0.0280985422525;NFIL3:0.0262348435249;RFX1:0.0242292018515;HES1:0.0223204786263;SNAI1..3:0.0173921543894;NFE2:-0.000311681137255;IKZF2:-0.0143489067638;NKX2-2,8:-0.0186629087192;MZF1:-0.0363828029592;MED-1{core}:-0.0394877733749;JUN:-0.0545502338796;FOSL2:-0.0634565039011;MYOD1:-0.0759977892843;GTF2I:-0.0853810104774;HOXA9_MEIS1:-0.0950301241082;TOPORS:-0.0965999329303;MAZ:-0.109734487738;ZEB1:-0.112258811246;GFI1B:-0.117171214619;FOXD3:-0.125583828589;STAT1,3:-0.126261067811;GATA6:-0.128076753923;FOXP1:-0.143238097728;TBP:-0.157614630311;HSF1,2:-0.162332742774;PDX1:-0.164530394644;HNF4A_NR2F1,2:-0.172364897788;KLF4:-0.173780063487;TFAP2{A,C}:-0.181762432526;HOX{A5,B5}:-0.182201301045;MYBL2:-0.189163178115;T:-0.212585648809;PAX4:-0.218225614045;ATF5_CREB3:-0.225391763427;MEF2{A,B,C,D}:-0.235185365232;HNF1A:-0.236208884518;CREB1:-0.240061803588;LMO2:-0.241190725968;NFE2L2:-0.247191597362;PRDM1:-0.256631860804;UFEwm:-0.268247452323;FOX{D1,D2}:-0.270255324013;HMGA1,2:-0.271355636303;AHR_ARNT_ARNT2:-0.280051535143;ATF4:-0.288904915108;BPTF:-0.303421530641;HLF:-0.306544773255;CEBPA,B_DDIT3:-0.309345890596;FOXO1,3,4:-0.309530714465;RUNX1..3:-0.321794378962;HOX{A6,A7,B6,B7}:-0.327630452428;RFX2..5_RFXANK_RFXAP:-0.332183192282;PAX3,7:-0.349850375685;NFKB1_REL_RELA:-0.372979904032;ALX4:-0.380547785646;LHX3,4:-0.407599767452;DBP:-0.411970746869;FOXN1:-0.413748724031;HAND1,2:-0.432597752847;ZNF423:-0.433607736004;SPI1:-0.443025386178;SPIB:-0.448470655091;PAX5:-0.455369805049;ETS1,2:-0.462725572776;RXR{A,B,G}:-0.47903333332;NFATC1..3:-0.485870896123;PAX2:-0.506970128764;REST:-0.515377882038;TFAP4:-0.533802159962;ZBTB6:-0.545642035347;AR:-0.554306421105;SMAD1..7,9:-0.577764364918;FOXP3:-0.592139970866;TFCP2:-0.603803784799;MYFfamily:-0.605622625599;IRF7:-0.611064582863;EBF1:-0.619238964872;GCM1,2:-0.652620954081;ZNF148:-0.668902791609;ESRRA:-0.674965207005;EP300:-0.683592419804;RREB1:-0.689239346053;RORA:-0.691339733093;NKX3-2:-0.709589967903;EVI1:-0.741488871477;STAT2,4,6:-0.748572742795;ATF2:-0.752619667163;TAL1_TCF{3,4,12}:-0.758138219555;XBP1:-0.76829161045;NHLH1,2:-0.78674049289;HMX1:-0.835004856129;IRF1,2:-0.899217747128;HIF1A:-0.917033480189;TGIF1:-0.920851301365;SOX5:-0.951061354874;TLX2:-0.980855730159;DMAP1_NCOR{1,2}_SMARC:-0.983841855475;GZF1:-0.999956753531;NFIX:-1.00116563186;NFE2L1:-1.01907414921;RXRA_VDR{dimer}:-1.05863576581;ZNF238:-1.06618575656;NANOG{mouse}:-1.07794650531;GLI1..3:-1.12456857013;SRF:-1.13678938988;ESR1:-1.14854368333;ATF6:-1.2738151414;SREBF1,2:-1.4088529457;MAFB:-1.92228768079 | |top_motifs=TFDP1:1.37979250874;TP53:1.33953135227;NFY{A,B,C}:1.33696072607;VSX1,2:1.32605012802;E2F1..5:1.21820152281;PAX1,9:1.1412822604;ONECUT1,2:1.11645726218;ELK1,4_GABP{A,B1}:1.11481453835;GFI1:1.09878727023;POU2F1..3:1.07824896646;SOX17:0.997966245799;GTF2A1,2:0.98488188704;ADNP_IRX_SIX_ZHX:0.949099128625;SOX2:0.914912368178;HBP1_HMGB_SSRP1_UBTF:0.906264341272;ZNF143:0.853414791326;SOX{8,9,10}:0.802579509314;POU6F1:0.780097509888;POU5F1:0.747125379267;CDC5L:0.741418273402;POU1F1:0.733192909438;PAX6:0.698196715898;NRF1:0.677630319993;NR6A1:0.667237432587;TEF:0.663622040804;TLX1..3_NFIC{dimer}:0.655061476897;BREu{core}:0.635593017123;ZIC1..3:0.622477196392;PITX1..3:0.621934987348;bHLH_family:0.620725638348;MYB:0.598533010191;ZFP161:0.558361038613;NR5A1,2:0.539602042061;FOXM1:0.492564545473;SP1:0.489911879621;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.48068647592;TFAP2B:0.472911193105;HIC1:0.4612967837;ALX1:0.454502776783;NANOG:0.453205340624;NKX6-1,2:0.425918307144;PAX8:0.422898457928;XCPE1{core}:0.42008111107;LEF1_TCF7_TCF7L1,2:0.399006646718;NR3C1:0.387175287176;SPZ1:0.372272311292;CRX:0.354240717096;RBPJ:0.341028049202;FOXL1:0.328132572975;TEAD1:0.317867890627;ZBTB16:0.313544890682;PBX1:0.305589382534;HOX{A4,D4}:0.302721762909;EGR1..3:0.302669778574;EN1,2:0.294319784696;FOX{F1,F2,J1}:0.289383565625;NKX3-1:0.278184524987;OCT4_SOX2{dimer}:0.264686420029;FOXQ1:0.263257128395;PPARG:0.261450445966;AIRE:0.255123848234;ELF1,2,4:0.231629509089;STAT5{A,B}:0.222452259313;FOS_FOS{B,L1}_JUN{B,D}:0.202178241794;MTE{core}:0.201594632967;NKX2-3_NKX2-5:0.200097037283;CDX1,2,4:0.181534288621;YY1:0.172713044298;MTF1:0.164668154091;FOX{I1,J2}:0.159594410434;GATA4:0.154628456146;PRRX1,2:0.145530030098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.135258537307;NKX2-1,4:0.125150521116;CUX2:0.116276744588;PATZ1:0.109417924524;FOXA2:0.0793582538713;TBX4,5:0.0586604566466;NR1H4:0.0584027610839;ARID5B:0.0501690004035;BACH2:0.0493431681868;POU3F1..4:0.0459170471277;ZNF384:0.0301291660158;IKZF1:0.0280985422525;NFIL3:0.0262348435249;RFX1:0.0242292018515;HES1:0.0223204786263;SNAI1..3:0.0173921543894;NFE2:-0.000311681137255;IKZF2:-0.0143489067638;NKX2-2,8:-0.0186629087192;MZF1:-0.0363828029592;MED-1{core}:-0.0394877733749;JUN:-0.0545502338796;FOSL2:-0.0634565039011;MYOD1:-0.0759977892843;GTF2I:-0.0853810104774;HOXA9_MEIS1:-0.0950301241082;TOPORS:-0.0965999329303;MAZ:-0.109734487738;ZEB1:-0.112258811246;GFI1B:-0.117171214619;FOXD3:-0.125583828589;STAT1,3:-0.126261067811;GATA6:-0.128076753923;FOXP1:-0.143238097728;TBP:-0.157614630311;HSF1,2:-0.162332742774;PDX1:-0.164530394644;HNF4A_NR2F1,2:-0.172364897788;KLF4:-0.173780063487;TFAP2{A,C}:-0.181762432526;HOX{A5,B5}:-0.182201301045;MYBL2:-0.189163178115;T:-0.212585648809;PAX4:-0.218225614045;ATF5_CREB3:-0.225391763427;MEF2{A,B,C,D}:-0.235185365232;HNF1A:-0.236208884518;CREB1:-0.240061803588;LMO2:-0.241190725968;NFE2L2:-0.247191597362;PRDM1:-0.256631860804;UFEwm:-0.268247452323;FOX{D1,D2}:-0.270255324013;HMGA1,2:-0.271355636303;AHR_ARNT_ARNT2:-0.280051535143;ATF4:-0.288904915108;BPTF:-0.303421530641;HLF:-0.306544773255;CEBPA,B_DDIT3:-0.309345890596;FOXO1,3,4:-0.309530714465;RUNX1..3:-0.321794378962;HOX{A6,A7,B6,B7}:-0.327630452428;RFX2..5_RFXANK_RFXAP:-0.332183192282;PAX3,7:-0.349850375685;NFKB1_REL_RELA:-0.372979904032;ALX4:-0.380547785646;LHX3,4:-0.407599767452;DBP:-0.411970746869;FOXN1:-0.413748724031;HAND1,2:-0.432597752847;ZNF423:-0.433607736004;SPI1:-0.443025386178;SPIB:-0.448470655091;PAX5:-0.455369805049;ETS1,2:-0.462725572776;RXR{A,B,G}:-0.47903333332;NFATC1..3:-0.485870896123;PAX2:-0.506970128764;REST:-0.515377882038;TFAP4:-0.533802159962;ZBTB6:-0.545642035347;AR:-0.554306421105;SMAD1..7,9:-0.577764364918;FOXP3:-0.592139970866;TFCP2:-0.603803784799;MYFfamily:-0.605622625599;IRF7:-0.611064582863;EBF1:-0.619238964872;GCM1,2:-0.652620954081;ZNF148:-0.668902791609;ESRRA:-0.674965207005;EP300:-0.683592419804;RREB1:-0.689239346053;RORA:-0.691339733093;NKX3-2:-0.709589967903;EVI1:-0.741488871477;STAT2,4,6:-0.748572742795;ATF2:-0.752619667163;TAL1_TCF{3,4,12}:-0.758138219555;XBP1:-0.76829161045;NHLH1,2:-0.78674049289;HMX1:-0.835004856129;IRF1,2:-0.899217747128;HIF1A:-0.917033480189;TGIF1:-0.920851301365;SOX5:-0.951061354874;TLX2:-0.980855730159;DMAP1_NCOR{1,2}_SMARC:-0.983841855475;GZF1:-0.999956753531;NFIX:-1.00116563186;NFE2L1:-1.01907414921;RXRA_VDR{dimer}:-1.05863576581;ZNF238:-1.06618575656;NANOG{mouse}:-1.07794650531;GLI1..3:-1.12456857013;SRF:-1.13678938988;ESR1:-1.14854368333;ATF6:-1.2738151414;SREBF1,2:-1.4088529457;MAFB:-1.92228768079 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10759-110E3;search_select_hide=table117:FF:10759-110E3 | |||
}} | }} |
Latest revision as of 15:03, 3 June 2020
Name: | medulloblastoma cell line:ONS-76 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11861 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11861
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11861
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.361 |
10 | 10 | 0.133 |
100 | 100 | 0.864 |
101 | 101 | 0.308 |
102 | 102 | 0.545 |
103 | 103 | 0.277 |
104 | 104 | 0.872 |
105 | 105 | 0.817 |
106 | 106 | 0.00693 |
107 | 107 | 0.202 |
108 | 108 | 0.717 |
109 | 109 | 0.352 |
11 | 11 | 0.116 |
110 | 110 | 0.219 |
111 | 111 | 0.836 |
112 | 112 | 0.00976 |
113 | 113 | 0.858 |
114 | 114 | 0.193 |
115 | 115 | 0.722 |
116 | 116 | 0.379 |
117 | 117 | 0.218 |
118 | 118 | 0.487 |
119 | 119 | 0.0846 |
12 | 12 | 0.584 |
120 | 120 | 0.498 |
121 | 121 | 0.828 |
122 | 122 | 0.762 |
123 | 123 | 0.798 |
124 | 124 | 0.0712 |
125 | 125 | 0.478 |
126 | 126 | 0.252 |
127 | 127 | 0.841 |
128 | 128 | 0.0397 |
129 | 129 | 0.185 |
13 | 13 | 0.394 |
130 | 130 | 0.0786 |
131 | 131 | 0.807 |
132 | 132 | 0.925 |
133 | 133 | 0.033 |
134 | 134 | 0.125 |
135 | 135 | 0.0514 |
136 | 136 | 0.279 |
137 | 137 | 0.0482 |
138 | 138 | 0.216 |
139 | 139 | 0.00984 |
14 | 14 | 0.67 |
140 | 140 | 0.101 |
141 | 141 | 0.383 |
142 | 142 | 0.659 |
143 | 143 | 0.0362 |
144 | 144 | 0.146 |
145 | 145 | 0.164 |
146 | 146 | 0.942 |
147 | 147 | 0.521 |
148 | 148 | 0.113 |
149 | 149 | 0.0508 |
15 | 15 | 0.171 |
150 | 150 | 0.768 |
151 | 151 | 0.462 |
152 | 152 | 0.392 |
153 | 153 | 0.298 |
154 | 154 | 0.582 |
155 | 155 | 0.727 |
156 | 156 | 0.975 |
157 | 157 | 0.187 |
158 | 158 | 0.665 |
159 | 159 | 0.651 |
16 | 16 | 0.243 |
160 | 160 | 0.612 |
161 | 161 | 0.637 |
162 | 162 | 0.699 |
163 | 163 | 0.317 |
164 | 164 | 0.0699 |
165 | 165 | 0.659 |
166 | 166 | 0.0495 |
167 | 167 | 0.629 |
168 | 168 | 0.218 |
169 | 169 | 0.0824 |
17 | 17 | 0.116 |
18 | 18 | 0.0787 |
19 | 19 | 0.0979 |
2 | 2 | 0.177 |
20 | 20 | 0.761 |
21 | 21 | 0.153 |
22 | 22 | 0.229 |
23 | 23 | 0.0451 |
24 | 24 | 0.6 |
25 | 25 | 0.63 |
26 | 26 | 0.508 |
27 | 27 | 0.148 |
28 | 28 | 0.802 |
29 | 29 | 0.331 |
3 | 3 | 0.152 |
30 | 30 | 0.943 |
31 | 31 | 0.503 |
32 | 32 | 0.00238 |
33 | 33 | 0.479 |
34 | 34 | 0.277 |
35 | 35 | 0.0559 |
36 | 36 | 0.371 |
37 | 37 | 0.0938 |
38 | 38 | 0.556 |
39 | 39 | 0.389 |
4 | 4 | 0.859 |
40 | 40 | 0.474 |
41 | 41 | 0.367 |
42 | 42 | 0.967 |
43 | 43 | 0.0477 |
44 | 44 | 0.335 |
45 | 45 | 0.529 |
46 | 46 | 0.164 |
47 | 47 | 0.679 |
48 | 48 | 0.505 |
49 | 49 | 0.0984 |
5 | 5 | 0.0581 |
50 | 50 | 0.698 |
51 | 51 | 0.436 |
52 | 52 | 0.105 |
53 | 53 | 0.623 |
54 | 54 | 0.515 |
55 | 55 | 0.505 |
56 | 56 | 0.503 |
57 | 57 | 0.77 |
58 | 58 | 0.0733 |
59 | 59 | 0.0435 |
6 | 6 | 0.289 |
60 | 60 | 0.0277 |
61 | 61 | 0.477 |
62 | 62 | 0.00791 |
63 | 63 | 0.319 |
64 | 64 | 0.383 |
65 | 65 | 0.119 |
66 | 66 | 0.085 |
67 | 67 | 0.424 |
68 | 68 | 0.683 |
69 | 69 | 0.788 |
7 | 7 | 0.505 |
70 | 70 | 0.0124 |
71 | 71 | 0.147 |
72 | 72 | 0.255 |
73 | 73 | 0.273 |
74 | 74 | 0.591 |
75 | 75 | 0.189 |
76 | 76 | 0.754 |
77 | 77 | 0.182 |
78 | 78 | 0.262 |
79 | 79 | 0.00823 |
8 | 8 | 0.226 |
80 | 80 | 0.0639 |
81 | 81 | 0.176 |
82 | 82 | 0.00834 |
83 | 83 | 0.844 |
84 | 84 | 0.303 |
85 | 85 | 7.20424e-4 |
86 | 86 | 0.179 |
87 | 87 | 0.585 |
88 | 88 | 0.4 |
89 | 89 | 0.133 |
9 | 9 | 0.183 |
90 | 90 | 0.0424 |
91 | 91 | 0.184 |
92 | 92 | 0.00524 |
93 | 93 | 0.387 |
94 | 94 | 0.126 |
95 | 95 | 0.501 |
96 | 96 | 0.0482 |
97 | 97 | 0.787 |
98 | 98 | 0.434 |
99 | 99 | 0.919 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11861
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101359 medulloblastoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0101359 (medulloblastoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)