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{{f5samples
{{f5samples
|id=FF:10783-110G9
|DRA_sample_Accession=CAGE@SAMD00005528
|name=thyroid carcinoma cell line:TCO-1
|accession_numbers=CAGE;DRX008026;DRR008898;DRZ000323;DRZ001708;DRZ011673;DRZ013058
|sample_id=10783
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
|rna_tube_id=110G9
|rna_box=110
|rna_position=G9
|sample_cell_lot=
|sample_cell_catalog=jcrb0239
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=thyroid
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=unknown
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.12
|rna_od260/280=2.04
|sample_cell_type=unclassifiable
|sample_cell_line=TCO-1
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=thyroid carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=58.86351
|rna_concentration=2.18013
|sample_note=
|profile_hcage=CNhs11872,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002046,UBERON:0002050,UBERON:0002368,UBERON:0002530,UBERON:0002532,UBERON:0003091,UBERON:0003104,UBERON:0004117,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005291,UBERON:0005423,UBERON:0005911,UBERON:0006562,UBERON:0007026,UBERON:0007123,UBERON:0007689,UBERON:0007690,UBERON:0008814,UBERON:0009142,UBERON:0009145
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101610
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316
|fonse_cell_line=FF:0101610
|fonse_cell_line=FF:0101610
|fonse_cell_line_closure=FF:0101610
|fonse_cell_line_closure=FF:0101610
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
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|name=thyroid carcinoma cell line:TCO-1
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|rna_box=110
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|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.12
|rna_od260/280=2.04
|rna_position=G9
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|rna_sample_type=total RNA
|rna_tube_id=110G9
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|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=jcrb0239
|sample_cell_line=TCO-1
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|sample_description=
|sample_dev_stage=
|sample_disease=thyroid carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.65508034941138e-260!GO:0043226;organelle;4.09289648719921e-209!GO:0043229;intracellular organelle;7.99250398271697e-209!GO:0043231;intracellular membrane-bound organelle;1.82589111829881e-201!GO:0043227;membrane-bound organelle;1.91421126354426e-201!GO:0005737;cytoplasm;1.8387412059871e-187!GO:0044422;organelle part;7.79689328060827e-149!GO:0044446;intracellular organelle part;2.95142933752942e-147!GO:0044444;cytoplasmic part;7.97526705322388e-124!GO:0032991;macromolecular complex;7.12540462674071e-105!GO:0030529;ribonucleoprotein complex;1.93852977817976e-97!GO:0005634;nucleus;1.47696937063846e-92!GO:0044238;primary metabolic process;9.40706348885078e-91!GO:0044237;cellular metabolic process;2.73680216538316e-89!GO:0043170;macromolecule metabolic process;2.56909524615376e-86!GO:0005515;protein binding;5.02736353350448e-82!GO:0044428;nuclear part;2.2312823342514e-79!GO:0043233;organelle lumen;6.23959220287542e-79!GO:0031974;membrane-enclosed lumen;6.23959220287542e-79!GO:0003723;RNA binding;9.30933047835691e-77!GO:0005739;mitochondrion;3.40540775290658e-69!GO:0005840;ribosome;2.65522596760942e-59!GO:0006412;translation;3.32545414672973e-56!GO:0016043;cellular component organization and biogenesis;6.82514282103731e-54!GO:0006396;RNA processing;2.0638144430214e-53!GO:0003735;structural constituent of ribosome;2.22062423825316e-52!GO:0043283;biopolymer metabolic process;3.48872188497212e-52!GO:0019538;protein metabolic process;1.22953119076972e-50!GO:0043234;protein complex;1.42515524290176e-50!GO:0031981;nuclear lumen;3.5822718645017e-49!GO:0043228;non-membrane-bound organelle;1.01763489420647e-46!GO:0043232;intracellular non-membrane-bound organelle;1.01763489420647e-46!GO:0010467;gene expression;1.50978553472496e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.77695689827288e-45!GO:0044267;cellular protein metabolic process;8.6372660431166e-45!GO:0044260;cellular macromolecule metabolic process;1.54106156009763e-44!GO:0031090;organelle membrane;4.64482657768884e-44!GO:0033279;ribosomal subunit;4.73437867231195e-44!GO:0044429;mitochondrial part;2.83036330018545e-43!GO:0044249;cellular biosynthetic process;1.46898691607475e-42!GO:0033036;macromolecule localization;5.01119128439641e-42!GO:0009059;macromolecule biosynthetic process;1.94624286598769e-41!GO:0009058;biosynthetic process;7.59093229684518e-41!GO:0015031;protein transport;3.37947472483911e-40!GO:0016071;mRNA metabolic process;3.92954165952414e-40!GO:0006996;organelle organization and biogenesis;3.61069340062961e-39!GO:0008380;RNA splicing;1.0637896714724e-38!GO:0031967;organelle envelope;3.23068368946685e-38!GO:0005829;cytosol;4.64814118672106e-38!GO:0031975;envelope;5.71074924934865e-38!GO:0008104;protein localization;8.99248819140971e-38!GO:0045184;establishment of protein localization;2.71397967493695e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.04520493888651e-36!GO:0046907;intracellular transport;4.18346797704328e-36!GO:0065003;macromolecular complex assembly;2.67179275093625e-35!GO:0006259;DNA metabolic process;1.29709060095956e-34!GO:0006397;mRNA processing;2.1450108095301e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.1315037517921e-32!GO:0022607;cellular component assembly;1.58907982158489e-31!GO:0005654;nucleoplasm;3.47312866288077e-29!GO:0005681;spliceosome;1.12581119612554e-28!GO:0003676;nucleic acid binding;1.59066266668608e-28!GO:0006886;intracellular protein transport;3.57419610521719e-28!GO:0007049;cell cycle;1.63530456489273e-27!GO:0005740;mitochondrial envelope;3.26075846342379e-26!GO:0044445;cytosolic part;3.5240522542255e-25!GO:0000166;nucleotide binding;9.39175723252327e-25!GO:0031966;mitochondrial membrane;9.82842392451862e-25!GO:0019866;organelle inner membrane;2.41141150698725e-24!GO:0051649;establishment of cellular localization;2.39015808250409e-23!GO:0051641;cellular localization;2.98464070971108e-23!GO:0044451;nucleoplasm part;3.75379956199038e-23!GO:0015934;large ribosomal subunit;6.53617665782789e-23!GO:0005743;mitochondrial inner membrane;1.3121934566131e-22!GO:0015935;small ribosomal subunit;3.30096882271933e-22!GO:0005730;nucleolus;7.29034692807956e-22!GO:0022402;cell cycle process;5.62841790968981e-21!GO:0016874;ligase activity;7.76045204143387e-21!GO:0006457;protein folding;1.41200379878815e-20!GO:0022618;protein-RNA complex assembly;3.16476028528728e-20!GO:0006119;oxidative phosphorylation;4.4357742002359e-20!GO:0031980;mitochondrial lumen;4.98427780343432e-20!GO:0005759;mitochondrial matrix;4.98427780343432e-20!GO:0044455;mitochondrial membrane part;8.16474876987967e-20!GO:0016070;RNA metabolic process;1.17190931898382e-19!GO:0005694;chromosome;1.57743121708649e-19!GO:0016462;pyrophosphatase activity;2.0051913984209e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.29465977966096e-19!GO:0006974;response to DNA damage stimulus;3.00423217933458e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;4.2310078995617e-19!GO:0017111;nucleoside-triphosphatase activity;6.12892782028639e-19!GO:0012505;endomembrane system;8.05407896415257e-19!GO:0000278;mitotic cell cycle;2.05615483719658e-18!GO:0044427;chromosomal part;5.54696133444075e-18!GO:0042254;ribosome biogenesis and assembly;1.20549700428481e-17!GO:0048770;pigment granule;1.59044629155811e-17!GO:0042470;melanosome;1.59044629155811e-17!GO:0032553;ribonucleotide binding;2.43333095291967e-17!GO:0032555;purine ribonucleotide binding;2.43333095291967e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.32278946282624e-17!GO:0019941;modification-dependent protein catabolic process;4.05505724386684e-17!GO:0043632;modification-dependent macromolecule catabolic process;4.05505724386684e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.69442873323521e-17!GO:0017076;purine nucleotide binding;5.4102644430021e-17!GO:0006281;DNA repair;6.49017219297735e-17!GO:0005746;mitochondrial respiratory chain;7.65302298440602e-17!GO:0005783;endoplasmic reticulum;7.65830552316191e-17!GO:0006512;ubiquitin cycle;1.09454352982729e-16!GO:0044257;cellular protein catabolic process;1.10943926755952e-16!GO:0044265;cellular macromolecule catabolic process;1.41081267465957e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.46648502453333e-16!GO:0043285;biopolymer catabolic process;1.85947871963929e-16!GO:0008135;translation factor activity, nucleic acid binding;3.23538259338447e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.4963517090378e-16!GO:0008134;transcription factor binding;6.96237093585752e-16!GO:0005761;mitochondrial ribosome;7.90638168134689e-16!GO:0000313;organellar ribosome;7.90638168134689e-16!GO:0006260;DNA replication;1.8452535544082e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.55894597859205e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.8733027688404e-15!GO:0051082;unfolded protein binding;4.56207083231038e-15!GO:0044432;endoplasmic reticulum part;5.51728716055321e-15!GO:0005524;ATP binding;7.60770127031123e-15!GO:0051186;cofactor metabolic process;8.90736578838827e-15!GO:0032559;adenyl ribonucleotide binding;1.33148123338507e-14!GO:0030163;protein catabolic process;2.82835990383356e-14!GO:0009057;macromolecule catabolic process;2.96447961128316e-14!GO:0043412;biopolymer modification;3.47203291975171e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.71358692190151e-14!GO:0003954;NADH dehydrogenase activity;3.71358692190151e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.71358692190151e-14!GO:0030554;adenyl nucleotide binding;4.24714542841042e-14!GO:0022403;cell cycle phase;4.30693892864499e-14!GO:0051276;chromosome organization and biogenesis;5.87755464488681e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.21048146193485e-14!GO:0000375;RNA splicing, via transesterification reactions;8.21048146193485e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.21048146193485e-14!GO:0006605;protein targeting;1.35918593197103e-13!GO:0048193;Golgi vesicle transport;1.67538812030692e-13!GO:0000087;M phase of mitotic cell cycle;4.25528417595766e-13!GO:0009719;response to endogenous stimulus;5.60811873910946e-13!GO:0007067;mitosis;6.60265331837845e-13!GO:0005635;nuclear envelope;8.83894851179659e-13!GO:0003743;translation initiation factor activity;8.90124557807519e-13!GO:0006413;translational initiation;1.23226872560253e-12!GO:0006399;tRNA metabolic process;1.79775621108435e-12!GO:0044248;cellular catabolic process;1.93916094294306e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.2687470291458e-12!GO:0042773;ATP synthesis coupled electron transport;2.2687470291458e-12!GO:0006464;protein modification process;3.47134331988736e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.25645802285423e-12!GO:0045271;respiratory chain complex I;4.25645802285423e-12!GO:0005747;mitochondrial respiratory chain complex I;4.25645802285423e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.284854489778e-12!GO:0006732;coenzyme metabolic process;5.36989811464572e-12!GO:0051301;cell division;6.00418081567334e-12!GO:0016604;nuclear body;6.56776516182814e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.32466561365472e-11!GO:0031965;nuclear membrane;1.47671808023094e-11!GO:0006446;regulation of translational initiation;1.62895361740327e-11!GO:0006913;nucleocytoplasmic transport;1.758217128993e-11!GO:0051726;regulation of cell cycle;3.15995633925267e-11!GO:0005794;Golgi apparatus;3.43651429722213e-11!GO:0051169;nuclear transport;3.49275708441727e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.72894278709639e-11!GO:0044453;nuclear membrane part;5.33838224615515e-11!GO:0000074;regulation of progression through cell cycle;5.40822865206943e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;5.40968933729859e-11!GO:0006364;rRNA processing;6.88835366650154e-11!GO:0005789;endoplasmic reticulum membrane;8.04793686022991e-11!GO:0000279;M phase;1.0993736315979e-10!GO:0016192;vesicle-mediated transport;1.12433463710333e-10!GO:0008639;small protein conjugating enzyme activity;1.60854809188879e-10!GO:0016072;rRNA metabolic process;1.82587782876823e-10!GO:0003712;transcription cofactor activity;1.83867416795776e-10!GO:0006323;DNA packaging;1.89284315575547e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.17235887752236e-10!GO:0006461;protein complex assembly;3.41172108837981e-10!GO:0043687;post-translational protein modification;3.52767317277728e-10!GO:0000785;chromatin;3.78030700598213e-10!GO:0004842;ubiquitin-protein ligase activity;4.54188172848128e-10!GO:0016887;ATPase activity;6.81229468543334e-10!GO:0042623;ATPase activity, coupled;8.8859789241879e-10!GO:0050657;nucleic acid transport;9.03278293039529e-10!GO:0051236;establishment of RNA localization;9.03278293039529e-10!GO:0050658;RNA transport;9.03278293039529e-10!GO:0019787;small conjugating protein ligase activity;9.21080708976138e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.13814793443374e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.13814793443374e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.13814793443374e-09!GO:0005793;ER-Golgi intermediate compartment;1.1669665277267e-09!GO:0006403;RNA localization;1.20668023679472e-09!GO:0065002;intracellular protein transport across a membrane;1.53803665180225e-09!GO:0005643;nuclear pore;1.61004252182338e-09!GO:0009055;electron carrier activity;1.64818238832621e-09!GO:0004386;helicase activity;1.84053545548699e-09!GO:0006366;transcription from RNA polymerase II promoter;2.01351443287994e-09!GO:0065004;protein-DNA complex assembly;2.01351443287994e-09!GO:0009060;aerobic respiration;2.1463390918236e-09!GO:0012501;programmed cell death;2.27890596081128e-09!GO:0043038;amino acid activation;3.06023674275857e-09!GO:0006418;tRNA aminoacylation for protein translation;3.06023674275857e-09!GO:0043039;tRNA aminoacylation;3.06023674275857e-09!GO:0006163;purine nucleotide metabolic process;3.12135991152903e-09!GO:0016607;nuclear speck;3.16820683657199e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.47939477120623e-09!GO:0006915;apoptosis;4.43642421850064e-09!GO:0009259;ribonucleotide metabolic process;6.36942285319887e-09!GO:0016881;acid-amino acid ligase activity;6.51801889551972e-09!GO:0008026;ATP-dependent helicase activity;6.67104062132146e-09!GO:0050794;regulation of cellular process;7.16610076841234e-09!GO:0048523;negative regulation of cellular process;7.43295375094712e-09!GO:0006164;purine nucleotide biosynthetic process;1.03314076646447e-08!GO:0007005;mitochondrion organization and biogenesis;1.10722785133307e-08!GO:0006333;chromatin assembly or disassembly;1.69364242717209e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.80080300741032e-08!GO:0009150;purine ribonucleotide metabolic process;2.08293397263136e-08!GO:0008219;cell death;2.72651462615572e-08!GO:0016265;death;2.72651462615572e-08!GO:0045333;cellular respiration;2.73807446486185e-08!GO:0003697;single-stranded DNA binding;4.32034251994084e-08!GO:0009260;ribonucleotide biosynthetic process;4.98404720295718e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.90110093783216e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.24256041717705e-08!GO:0051028;mRNA transport;7.55448651515284e-08!GO:0051188;cofactor biosynthetic process;8.30755124596291e-08!GO:0017038;protein import;8.40834299810355e-08!GO:0015630;microtubule cytoskeleton;9.57764902452875e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.01955197940419e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.03011331213844e-07!GO:0046930;pore complex;1.15192596001984e-07!GO:0043566;structure-specific DNA binding;1.22382248926726e-07!GO:0005667;transcription factor complex;1.22651241786985e-07!GO:0009141;nucleoside triphosphate metabolic process;1.32498956376317e-07!GO:0051246;regulation of protein metabolic process;1.77999970567639e-07!GO:0048519;negative regulation of biological process;1.93424940449126e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.97914893475156e-07!GO:0016779;nucleotidyltransferase activity;2.115002449232e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.115002449232e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.115002449232e-07!GO:0009056;catabolic process;2.49229858868114e-07!GO:0030120;vesicle coat;2.61339747740656e-07!GO:0030662;coated vesicle membrane;2.61339747740656e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.67597296510246e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.8335397442324e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.8335397442324e-07!GO:0008565;protein transporter activity;2.83645279078033e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.29289362745027e-07!GO:0015986;ATP synthesis coupled proton transport;3.59349391561039e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.59349391561039e-07!GO:0006334;nucleosome assembly;3.59349391561039e-07!GO:0000775;chromosome, pericentric region;4.04788238367826e-07!GO:0006099;tricarboxylic acid cycle;5.11375231977133e-07!GO:0046356;acetyl-CoA catabolic process;5.11375231977133e-07!GO:0003924;GTPase activity;5.26132357936392e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.09413761803987e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.09413761803987e-07!GO:0032446;protein modification by small protein conjugation;6.42548442705744e-07!GO:0006261;DNA-dependent DNA replication;7.59647466681499e-07!GO:0016567;protein ubiquitination;9.08326981029646e-07!GO:0016564;transcription repressor activity;9.96714547032139e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.12767665872081e-06!GO:0005768;endosome;1.189580031863e-06!GO:0000245;spliceosome assembly;1.33760431634734e-06!GO:0006084;acetyl-CoA metabolic process;1.41941125917976e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.50428549469735e-06!GO:0003714;transcription corepressor activity;1.73658892724721e-06!GO:0031497;chromatin assembly;1.81404961813574e-06!GO:0046034;ATP metabolic process;2.06733013125967e-06!GO:0004298;threonine endopeptidase activity;2.07732657002983e-06!GO:0048475;coated membrane;2.27919415938442e-06!GO:0030117;membrane coat;2.27919415938442e-06!GO:0009109;coenzyme catabolic process;2.8855756702045e-06!GO:0045259;proton-transporting ATP synthase complex;3.37394156596721e-06!GO:0009108;coenzyme biosynthetic process;3.38511938075345e-06!GO:0016568;chromatin modification;3.89531717071121e-06!GO:0019829;cation-transporting ATPase activity;4.2293326961914e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.42084128046978e-06!GO:0007010;cytoskeleton organization and biogenesis;4.83330407192465e-06!GO:0051789;response to protein stimulus;4.86064957322392e-06!GO:0006986;response to unfolded protein;4.86064957322392e-06!GO:0009117;nucleotide metabolic process;5.10495705702268e-06!GO:0043623;cellular protein complex assembly;5.22663909905835e-06!GO:0006754;ATP biosynthetic process;5.38865080734475e-06!GO:0006753;nucleoside phosphate metabolic process;5.38865080734475e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.38891025554353e-06!GO:0005788;endoplasmic reticulum lumen;6.1884599521004e-06!GO:0043067;regulation of programmed cell death;6.38563377921159e-06!GO:0050789;regulation of biological process;6.85354622294396e-06!GO:0003899;DNA-directed RNA polymerase activity;6.98993081279475e-06!GO:0031324;negative regulation of cellular metabolic process;7.31355356450692e-06!GO:0006613;cotranslational protein targeting to membrane;7.68927406182514e-06!GO:0042981;regulation of apoptosis;8.09785994249329e-06!GO:0005819;spindle;8.1377739479858e-06!GO:0005762;mitochondrial large ribosomal subunit;8.40646078243551e-06!GO:0000315;organellar large ribosomal subunit;8.40646078243551e-06!GO:0005657;replication fork;8.69048453878348e-06!GO:0051168;nuclear export;9.07486829437449e-06!GO:0000151;ubiquitin ligase complex;9.30721101531896e-06!GO:0051325;interphase;1.05184791890528e-05!GO:0016740;transferase activity;1.13649445651648e-05!GO:0051187;cofactor catabolic process;1.53993282365007e-05!GO:0005798;Golgi-associated vesicle;1.55867863462749e-05!GO:0007051;spindle organization and biogenesis;1.56633666719569e-05!GO:0006916;anti-apoptosis;1.85271338184335e-05!GO:0051329;interphase of mitotic cell cycle;1.90523436841032e-05!GO:0006752;group transfer coenzyme metabolic process;1.93834837659188e-05!GO:0031252;leading edge;1.96760530097412e-05!GO:0043069;negative regulation of programmed cell death;1.99656025520993e-05!GO:0031988;membrane-bound vesicle;2.0175862924324e-05!GO:0016853;isomerase activity;2.13507747258098e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.13507747258098e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.23622056652387e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.32885555129213e-05!GO:0042802;identical protein binding;2.61260743982268e-05!GO:0009892;negative regulation of metabolic process;2.62519438543933e-05!GO:0019843;rRNA binding;3.04699445078591e-05!GO:0000314;organellar small ribosomal subunit;3.04699445078591e-05!GO:0005763;mitochondrial small ribosomal subunit;3.04699445078591e-05!GO:0005813;centrosome;3.15933165921136e-05!GO:0005525;GTP binding;3.22087976405396e-05!GO:0016563;transcription activator activity;3.55146338994333e-05!GO:0043681;protein import into mitochondrion;4.31382049189639e-05!GO:0043066;negative regulation of apoptosis;4.37894548630506e-05!GO:0006793;phosphorus metabolic process;4.40744858686381e-05!GO:0006796;phosphate metabolic process;4.40744858686381e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.47272068916214e-05!GO:0051170;nuclear import;4.48075861011471e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.25786281862839e-05!GO:0005815;microtubule organizing center;5.43057635498956e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.43517497044686e-05!GO:0044431;Golgi apparatus part;6.79777867563637e-05!GO:0003724;RNA helicase activity;7.9064478942015e-05!GO:0043021;ribonucleoprotein binding;8.03654093847723e-05!GO:0006606;protein import into nucleus;8.1175148014462e-05!GO:0030867;rough endoplasmic reticulum membrane;8.71182326744229e-05!GO:0045786;negative regulation of progression through cell cycle;9.06670937137855e-05!GO:0019222;regulation of metabolic process;9.85263582484814e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000100122612891642!GO:0008033;tRNA processing;0.000108027513511871!GO:0003690;double-stranded DNA binding;0.000122488954660928!GO:0019899;enzyme binding;0.000122576968219021!GO:0000075;cell cycle checkpoint;0.000128869457316907!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000129697274412719!GO:0003684;damaged DNA binding;0.0001379789369411!GO:0045454;cell redox homeostasis;0.000138778288590037!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000146563888610494!GO:0003729;mRNA binding;0.000155240843148997!GO:0016310;phosphorylation;0.000161376464231652!GO:0005770;late endosome;0.000162456568336683!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000171939709582762!GO:0030029;actin filament-based process;0.000179149182518904!GO:0008094;DNA-dependent ATPase activity;0.0002036279435634!GO:0016481;negative regulation of transcription;0.000221295238889109!GO:0016363;nuclear matrix;0.000221465992777713!GO:0051252;regulation of RNA metabolic process;0.000223158712224175!GO:0006626;protein targeting to mitochondrion;0.000223955144954201!GO:0008654;phospholipid biosynthetic process;0.000224247909929992!GO:0016859;cis-trans isomerase activity;0.000225557440301495!GO:0003713;transcription coactivator activity;0.000226177608257524!GO:0031982;vesicle;0.000242277566663402!GO:0000786;nucleosome;0.000242313203899939!GO:0016787;hydrolase activity;0.000245046323857106!GO:0032561;guanyl ribonucleotide binding;0.000259115660727493!GO:0019001;guanyl nucleotide binding;0.000259115660727493!GO:0006839;mitochondrial transport;0.000269136680424864!GO:0005769;early endosome;0.000284485971856378!GO:0051052;regulation of DNA metabolic process;0.000302630363160006!GO:0044440;endosomal part;0.000320855270880366!GO:0010008;endosome membrane;0.000320855270880366!GO:0031410;cytoplasmic vesicle;0.000348531636896337!GO:0000776;kinetochore;0.000351105016266645!GO:0008361;regulation of cell size;0.000359218969156528!GO:0051427;hormone receptor binding;0.000359506623551058!GO:0008250;oligosaccharyl transferase complex;0.000409284454690429!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000412130557829796!GO:0004576;oligosaccharyl transferase activity;0.000414937005086165!GO:0016491;oxidoreductase activity;0.000439032169008308!GO:0033116;ER-Golgi intermediate compartment membrane;0.000466634429242686!GO:0006302;double-strand break repair;0.000491687437193242!GO:0006405;RNA export from nucleus;0.000496934079298062!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000501140495741093!GO:0006383;transcription from RNA polymerase III promoter;0.000501338521005714!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000506587064138398!GO:0006612;protein targeting to membrane;0.000537746320891181!GO:0007006;mitochondrial membrane organization and biogenesis;0.000584134986908043!GO:0006402;mRNA catabolic process;0.000628715494423563!GO:0044452;nucleolar part;0.000639336293195018!GO:0016049;cell growth;0.000663271174171141!GO:0035257;nuclear hormone receptor binding;0.0006753917180761!GO:0015980;energy derivation by oxidation of organic compounds;0.000710588442547958!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000735418289120651!GO:0043488;regulation of mRNA stability;0.000827448995549449!GO:0043487;regulation of RNA stability;0.000827448995549449!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000832919052028109!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000844065405358833!GO:0000049;tRNA binding;0.000868631588663149!GO:0048471;perinuclear region of cytoplasm;0.000873073483634314!GO:0004527;exonuclease activity;0.000926927372971486!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000985465182055418!GO:0005791;rough endoplasmic reticulum;0.00103522164207647!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00104632429842031!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00104632429842031!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00104632429842031!GO:0005905;coated pit;0.00105435414383372!GO:0008092;cytoskeletal protein binding;0.00112926482162335!GO:0031968;organelle outer membrane;0.00118214190801319!GO:0030663;COPI coated vesicle membrane;0.00130865267469823!GO:0030126;COPI vesicle coat;0.00130865267469823!GO:0001726;ruffle;0.00131866485365777!GO:0005048;signal sequence binding;0.00142074018293796!GO:0005885;Arp2/3 protein complex;0.00143674892064262!GO:0009165;nucleotide biosynthetic process;0.00143759391312452!GO:0019867;outer membrane;0.00143798313738304!GO:0006310;DNA recombination;0.00148110409965573!GO:0008186;RNA-dependent ATPase activity;0.00152505003811929!GO:0001558;regulation of cell growth;0.00153626270453036!GO:0051920;peroxiredoxin activity;0.00157877476154633!GO:0005773;vacuole;0.0015900538967756!GO:0000139;Golgi membrane;0.00168046214246917!GO:0032508;DNA duplex unwinding;0.00168819393547145!GO:0032392;DNA geometric change;0.00168819393547145!GO:0018196;peptidyl-asparagine modification;0.00172027398299627!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00172027398299627!GO:0031072;heat shock protein binding;0.00172027398299627!GO:0005874;microtubule;0.00172142253151268!GO:0030880;RNA polymerase complex;0.00182946414148195!GO:0008312;7S RNA binding;0.00187719030962546!GO:0005741;mitochondrial outer membrane;0.00189259982159893!GO:0006414;translational elongation;0.00196787757106073!GO:0048500;signal recognition particle;0.00200363027530202!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00206608056890055!GO:0008168;methyltransferase activity;0.00217845958507584!GO:0046474;glycerophospholipid biosynthetic process;0.00224295868389937!GO:0008243;plasminogen activator activity;0.00226586382823032!GO:0003746;translation elongation factor activity;0.00226887809190007!GO:0030137;COPI-coated vesicle;0.00228273309166798!GO:0006401;RNA catabolic process;0.00240903687421977!GO:0016272;prefoldin complex;0.0024281537699839!GO:0003682;chromatin binding;0.00243957106728821!GO:0005684;U2-dependent spliceosome;0.00243957106728821!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00250559831124257!GO:0007088;regulation of mitosis;0.00264485242240408!GO:0048522;positive regulation of cellular process;0.00264485242240408!GO:0006352;transcription initiation;0.00264485242240408!GO:0016741;transferase activity, transferring one-carbon groups;0.00264525331855336!GO:0016197;endosome transport;0.00267536775969615!GO:0006091;generation of precursor metabolites and energy;0.00270847992677407!GO:0003678;DNA helicase activity;0.00270847992677407!GO:0030176;integral to endoplasmic reticulum membrane;0.00271169222475656!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0027157246107315!GO:0046489;phosphoinositide biosynthetic process;0.00281522002916592!GO:0006268;DNA unwinding during replication;0.00281884472921807!GO:0007059;chromosome segregation;0.00298535608949642!GO:0006595;polyamine metabolic process;0.00306563192536124!GO:0000082;G1/S transition of mitotic cell cycle;0.00323112951417294!GO:0007052;mitotic spindle organization and biogenesis;0.003231338116121!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00342464889680947!GO:0000428;DNA-directed RNA polymerase complex;0.00342464889680947!GO:0006497;protein amino acid lipidation;0.00345883661064206!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00359267335156398!GO:0045047;protein targeting to ER;0.00359267335156398!GO:0030658;transport vesicle membrane;0.00365867968211122!GO:0000323;lytic vacuole;0.00373441074436818!GO:0005764;lysosome;0.00373441074436818!GO:0030133;transport vesicle;0.00376366270342584!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00394441039324389!GO:0015002;heme-copper terminal oxidase activity;0.00394441039324389!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00394441039324389!GO:0004129;cytochrome-c oxidase activity;0.00394441039324389!GO:0004004;ATP-dependent RNA helicase activity;0.00395346238271141!GO:0043022;ribosome binding;0.00414971209775164!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00423225651427073!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00423225651427073!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0045795659578332!GO:0016251;general RNA polymerase II transcription factor activity;0.00476108506294579!GO:0030134;ER to Golgi transport vesicle;0.00502375059471783!GO:0030433;ER-associated protein catabolic process;0.00504324914485234!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00504324914485234!GO:0030132;clathrin coat of coated pit;0.00520465643776792!GO:0046483;heterocycle metabolic process;0.00521795733189683!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00539973763345959!GO:0009112;nucleobase metabolic process;0.00570927088204779!GO:0032200;telomere organization and biogenesis;0.00580624994250483!GO:0000723;telomere maintenance;0.00580624994250483!GO:0006891;intra-Golgi vesicle-mediated transport;0.00588658983982735!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0059392701810875!GO:0043596;nuclear replication fork;0.00613566594373931!GO:0006984;ER-nuclear signaling pathway;0.00626900252762803!GO:0003711;transcription elongation regulator activity;0.00626900252762803!GO:0031323;regulation of cellular metabolic process;0.00636958884409644!GO:0008408;3'-5' exonuclease activity;0.00645013559343368!GO:0043624;cellular protein complex disassembly;0.0065598642151085!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00656365417902308!GO:0008022;protein C-terminus binding;0.00657165976190541!GO:0000059;protein import into nucleus, docking;0.0065993955663637!GO:0046983;protein dimerization activity;0.00671775609368176!GO:0006509;membrane protein ectodomain proteolysis;0.0067518679130813!GO:0033619;membrane protein proteolysis;0.0067518679130813!GO:0017166;vinculin binding;0.00707510816934119!GO:0006284;base-excision repair;0.00725482747032034!GO:0030127;COPII vesicle coat;0.00725482747032034!GO:0012507;ER to Golgi transport vesicle membrane;0.00725482747032034!GO:0051540;metal cluster binding;0.00731472879180909!GO:0051536;iron-sulfur cluster binding;0.00731472879180909!GO:0031124;mRNA 3'-end processing;0.00755276228952179!GO:0030041;actin filament polymerization;0.00758742637839133!GO:0006144;purine base metabolic process;0.00776303137808741!GO:0065007;biological regulation;0.00784453341452919!GO:0008047;enzyme activator activity;0.00791743754579321!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0079280044780975!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00796271843782868!GO:0030659;cytoplasmic vesicle membrane;0.00808760885622703!GO:0006376;mRNA splice site selection;0.00823735443383239!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00823735443383239!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0082814516701274!GO:0051087;chaperone binding;0.00836779153646648!GO:0009116;nucleoside metabolic process;0.00871985218075478!GO:0008139;nuclear localization sequence binding;0.00872419863445629!GO:0051287;NAD binding;0.0088171063828302!GO:0030660;Golgi-associated vesicle membrane;0.00884018555136212!GO:0000339;RNA cap binding;0.00899806394595947!GO:0048487;beta-tubulin binding;0.00905064376305335!GO:0007093;mitotic cell cycle checkpoint;0.00918077970496231!GO:0040008;regulation of growth;0.00923424437784068!GO:0030384;phosphoinositide metabolic process;0.00939784516442794!GO:0016044;membrane organization and biogenesis;0.00959096596097769!GO:0000178;exosome (RNase complex);0.00964950129499454!GO:0006892;post-Golgi vesicle-mediated transport;0.0096613393103696!GO:0006520;amino acid metabolic process;0.00989522162968143!GO:0004518;nuclease activity;0.0105175629318725!GO:0005876;spindle microtubule;0.0105175629318725!GO:0005096;GTPase activator activity;0.01055372929573!GO:0046467;membrane lipid biosynthetic process;0.010633971856531!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0106817069188643!GO:0006611;protein export from nucleus;0.0107211606765383!GO:0005637;nuclear inner membrane;0.0110010547206677!GO:0004674;protein serine/threonine kinase activity;0.0110576032435965!GO:0051128;regulation of cellular component organization and biogenesis;0.0111387171063568!GO:0051539;4 iron, 4 sulfur cluster binding;0.0111500395623317!GO:0042158;lipoprotein biosynthetic process;0.0118643517665161!GO:0043284;biopolymer biosynthetic process;0.0119095218617017!GO:0006289;nucleotide-excision repair;0.0121638990051427!GO:0005832;chaperonin-containing T-complex;0.0121892638399604!GO:0007017;microtubule-based process;0.012268798366217!GO:0006350;transcription;0.012268798366217!GO:0006220;pyrimidine nucleotide metabolic process;0.0125363989160706!GO:0008180;signalosome;0.0126107862487542!GO:0044433;cytoplasmic vesicle part;0.0127303829246205!GO:0000096;sulfur amino acid metabolic process;0.0128323930860429!GO:0032259;methylation;0.0128475394878778!GO:0006275;regulation of DNA replication;0.0130299272491471!GO:0045941;positive regulation of transcription;0.0130887197006042!GO:0006506;GPI anchor biosynthetic process;0.0132067705688706!GO:0006650;glycerophospholipid metabolic process;0.0133377218330898!GO:0006270;DNA replication initiation;0.0136549762036216!GO:0030032;lamellipodium biogenesis;0.0136608055314367!GO:0030027;lamellipodium;0.0141800878142713!GO:0043065;positive regulation of apoptosis;0.014663993439075!GO:0016584;nucleosome positioning;0.014665893096018!GO:0032984;macromolecular complex disassembly;0.0146889743898493!GO:0044262;cellular carbohydrate metabolic process;0.0147156056587007!GO:0016126;sterol biosynthetic process;0.0147688324991273!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0149825535916077!GO:0045039;protein import into mitochondrial inner membrane;0.0149825535916077!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0153004005004364!GO:0043601;nuclear replisome;0.0153560654823364!GO:0030894;replisome;0.0153560654823364!GO:0009081;branched chain family amino acid metabolic process;0.0153620083110187!GO:0012506;vesicle membrane;0.0154804194687058!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0160445618580302!GO:0031901;early endosome membrane;0.0161442294542786!GO:0015631;tubulin binding;0.0164581864974212!GO:0008632;apoptotic program;0.0164581864974212!GO:0043414;biopolymer methylation;0.0165274532542882!GO:0008637;apoptotic mitochondrial changes;0.0166059571336213!GO:0045893;positive regulation of transcription, DNA-dependent;0.0167765441771336!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0169905614796668!GO:0043068;positive regulation of programmed cell death;0.0170247601426946!GO:0022415;viral reproductive process;0.0174298774756407!GO:0030118;clathrin coat;0.017466430999692!GO:0000781;chromosome, telomeric region;0.0176225489230816!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0179255855800856!GO:0009451;RNA modification;0.0181523706645512!GO:0006950;response to stress;0.0184046490812438!GO:0035258;steroid hormone receptor binding;0.0185116063091965!GO:0007243;protein kinase cascade;0.0185116063091965!GO:0019752;carboxylic acid metabolic process;0.0186888390509689!GO:0006505;GPI anchor metabolic process;0.0192377279937504!GO:0043241;protein complex disassembly;0.0194623806844797!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0195819703272462!GO:0006354;RNA elongation;0.0208873799618558!GO:0007050;cell cycle arrest;0.0210157597830178!GO:0045045;secretory pathway;0.0220744516456718!GO:0006082;organic acid metabolic process;0.0221850967113325!GO:0065009;regulation of a molecular function;0.0221850967113325!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0223839441527913!GO:0015399;primary active transmembrane transporter activity;0.0223839441527913!GO:0003702;RNA polymerase II transcription factor activity;0.0224838520310981!GO:0005869;dynactin complex;0.0227627563435808!GO:0006378;mRNA polyadenylation;0.0229295812714128!GO:0004532;exoribonuclease activity;0.023589564129596!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.023589564129596!GO:0031529;ruffle organization and biogenesis;0.0238001452427471!GO:0015992;proton transport;0.0239231331222253!GO:0006818;hydrogen transport;0.0241012090209796!GO:0004003;ATP-dependent DNA helicase activity;0.0242419432077388!GO:0042393;histone binding;0.0242419432077388!GO:0030521;androgen receptor signaling pathway;0.0242629420300565!GO:0008097;5S rRNA binding;0.0244286375856164!GO:0005758;mitochondrial intermembrane space;0.0250327058626459!GO:0043189;H4/H2A histone acetyltransferase complex;0.0254751575469478!GO:0030833;regulation of actin filament polymerization;0.025863875249966!GO:0031123;RNA 3'-end processing;0.0264308537234416!GO:0006406;mRNA export from nucleus;0.0265008664847276!GO:0045892;negative regulation of transcription, DNA-dependent;0.0267336069504603!GO:0006360;transcription from RNA polymerase I promoter;0.0270911761739094!GO:0022890;inorganic cation transmembrane transporter activity;0.0277085574269898!GO:0019206;nucleoside kinase activity;0.0278740079999363!GO:0030031;cell projection biogenesis;0.0279085531940469!GO:0005669;transcription factor TFIID complex;0.0280155706031885!GO:0046128;purine ribonucleoside metabolic process;0.0282663135074315!GO:0042278;purine nucleoside metabolic process;0.0282663135074315!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0283990100065503!GO:0030125;clathrin vesicle coat;0.0287700552512677!GO:0030665;clathrin coated vesicle membrane;0.0287700552512677!GO:0008652;amino acid biosynthetic process;0.0288031970232229!GO:0007264;small GTPase mediated signal transduction;0.0288907720455126!GO:0001836;release of cytochrome c from mitochondria;0.0290920925153321!GO:0006417;regulation of translation;0.0293440074688136!GO:0005811;lipid particle;0.0296448548771703!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0296772205119718!GO:0010257;NADH dehydrogenase complex assembly;0.0296772205119718!GO:0033108;mitochondrial respiratory chain complex assembly;0.0296772205119718!GO:0005850;eukaryotic translation initiation factor 2 complex;0.03037827396452!GO:0005938;cell cortex;0.03037827396452!GO:0050662;coenzyme binding;0.0308928127820708!GO:0005856;cytoskeleton;0.0309357625011129!GO:0006695;cholesterol biosynthetic process;0.0310989527313322!GO:0007040;lysosome organization and biogenesis;0.0323773263125707!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0325166904071729!GO:0046966;thyroid hormone receptor binding;0.0327827799030574!GO:0031371;ubiquitin conjugating enzyme complex;0.0338694253071767!GO:0031970;organelle envelope lumen;0.03397152487471!GO:0017134;fibroblast growth factor binding;0.0349705571302979!GO:0022411;cellular component disassembly;0.0353114532344359!GO:0000792;heterochromatin;0.035600759836148!GO:0006979;response to oxidative stress;0.0358880740754454!GO:0035267;NuA4 histone acetyltransferase complex;0.0364625846663753!GO:0007034;vacuolar transport;0.0365568965219799!GO:0042770;DNA damage response, signal transduction;0.0367881898879547!GO:0007004;telomere maintenance via telomerase;0.0371252325196219!GO:0031570;DNA integrity checkpoint;0.0371252325196219!GO:0005784;translocon complex;0.0375444822334332!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0380768647703663!GO:0006740;NADPH regeneration;0.0389091038213141!GO:0006098;pentose-phosphate shunt;0.0389091038213141!GO:0032906;transforming growth factor-beta2 production;0.0400107567171959!GO:0032909;regulation of transforming growth factor-beta2 production;0.0400107567171959!GO:0031625;ubiquitin protein ligase binding;0.0405873247686834!GO:0000118;histone deacetylase complex;0.0405873247686834!GO:0008538;proteasome activator activity;0.0411688373736486!GO:0010468;regulation of gene expression;0.0412617318290118!GO:0006779;porphyrin biosynthetic process;0.0412790852268342!GO:0033014;tetrapyrrole biosynthetic process;0.0412790852268342!GO:0046112;nucleobase biosynthetic process;0.0417705474613859!GO:0006596;polyamine biosynthetic process;0.0421443153715726!GO:0030911;TPR domain binding;0.0431115843038932!GO:0030968;unfolded protein response;0.0434998595569318!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0437864797774249!GO:0045947;negative regulation of translational initiation;0.043970539224618!GO:0004659;prenyltransferase activity;0.043970539224618!GO:0009083;branched chain family amino acid catabolic process;0.0445612748855398!GO:0006541;glutamine metabolic process;0.0445736460784494!GO:0043154;negative regulation of caspase activity;0.0445918838254855!GO:0007033;vacuole organization and biogenesis;0.0459628444695783!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0465500347461206!GO:0006400;tRNA modification;0.0467327601741558!GO:0033673;negative regulation of kinase activity;0.0467906069531856!GO:0006469;negative regulation of protein kinase activity;0.0467906069531856!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0468094991404597!GO:0030508;thiol-disulfide exchange intermediate activity;0.0469678650317817!GO:0009303;rRNA transcription;0.047041598272972!GO:0006672;ceramide metabolic process;0.0479032844295488!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0489053238318174!GO:0005100;Rho GTPase activator activity;0.0496523311586377
|sample_id=10783
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=thyroid
|top_motifs=NKX2-1,4:1.82611185439;ELK1,4_GABP{A,B1}:1.76532009911;TFDP1:1.45391933772;VSX1,2:1.19511573407;bHLH_family:1.13942418123;NKX3-1:1.13647567163;PAX6:1.09989403717;HBP1_HMGB_SSRP1_UBTF:0.960110376032;STAT1,3:0.904579553332;E2F1..5:0.904182588166;HIF1A:0.887450846179;ZNF143:0.843159384389;GFI1:0.832190964169;POU2F1..3:0.815848295114;NFY{A,B,C}:0.755175300602;ARID5B:0.696581751942;PITX1..3:0.604551626176;PPARG:0.598676310683;CDC5L:0.566367706569;POU1F1:0.560234802786;TEAD1:0.548218462788;FOXL1:0.544105809887;PAX5:0.513591959463;HIC1:0.481186270111;TLX1..3_NFIC{dimer}:0.471161821645;GCM1,2:0.458356860403;NRF1:0.449874101966;MTE{core}:0.443181676709;HOX{A4,D4}:0.428047297054;POU5F1:0.42468238825;FOXP1:0.419175960325;FOX{I1,J2}:0.416630923223;ZNF384:0.390348946393;YY1:0.367170963787;ELF1,2,4:0.357117638439;MYOD1:0.312527406868;AIRE:0.301001284214;TFAP2B:0.281218067218;NKX3-2:0.273605240349;AHR_ARNT_ARNT2:0.263195313472;NKX6-1,2:0.258720692691;RFX1:0.251204074194;EVI1:0.24553118808;TFAP2{A,C}:0.225591844914;GFI1B:0.218859937163;MYBL2:0.197335090136;FOX{D1,D2}:0.17812419836;POU3F1..4:0.1780310451;ONECUT1,2:0.173195541809;CDX1,2,4:0.169476698113;HMGA1,2:0.167584882822;ZNF148:0.166841966574;BREu{core}:0.155785736158;ZFP161:0.146483626606;XCPE1{core}:0.134142937778;PAX3,7:0.131742375801;EP300:0.129993944323;ZBTB16:0.128080052551;UFEwm:0.1264357631;HOXA9_MEIS1:0.125217693433;BACH2:0.124712193314;XBP1:0.122382169125;TP53:0.117093015048;FOXQ1:0.11705470723;PAX2:0.0885742042837;GLI1..3:0.0683952502997;FOS_FOS{B,L1}_JUN{B,D}:0.0648282432113;ZIC1..3:0.0636552764976;HOX{A5,B5}:0.0635775318946;SRF:0.060046253032;MTF1:0.0570665691456;MYB:0.0395504874072;ZBTB6:0.0357568480709;ADNP_IRX_SIX_ZHX:0.0252913894027;GTF2A1,2:0.0199170129195;LHX3,4:0.00660092427648;MAZ:-0.00329020400025;MEF2{A,B,C,D}:-0.00443330040647;SP1:-0.0180469628468;EGR1..3:-0.0430722216;FOXM1:-0.0482017580984;TEF:-0.0490913796561;NR6A1:-0.0631278068789;PRDM1:-0.0682158518929;TOPORS:-0.0710155489647;LEF1_TCF7_TCF7L1,2:-0.0728051591499;GATA4:-0.0776474976405;MED-1{core}:-0.0844755584202;FOSL2:-0.0907938564837;TBP:-0.0965660361623;EN1,2:-0.115544924769;GZF1:-0.117681169032;ATF4:-0.119187870223;NFE2:-0.127426076272;FOXA2:-0.131071523578;ATF5_CREB3:-0.158583437809;REST:-0.163337251835;POU6F1:-0.167459276701;PAX4:-0.192772526295;FOXO1,3,4:-0.208310178347;HLF:-0.225988993233;STAT2,4,6:-0.232722681809;NR3C1:-0.245619710147;STAT5{A,B}:-0.250910609959;MZF1:-0.252049600693;PAX1,9:-0.254181551429;SNAI1..3:-0.256043916216;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.258309113965;CEBPA,B_DDIT3:-0.267575923159;LMO2:-0.274985039543;KLF4:-0.281547106973;PDX1:-0.288950176611;SOX{8,9,10}:-0.292843034914;CREB1:-0.295227455055;NFATC1..3:-0.29654907284;IKZF2:-0.297756410035;RXRA_VDR{dimer}:-0.301767770732;IRF1,2:-0.301820391323;FOXD3:-0.310793923238;IKZF1:-0.311996984233;NFIL3:-0.315440665302;RXR{A,B,G}:-0.319483524036;TBX4,5:-0.326290208878;BPTF:-0.326731532595;NKX2-3_NKX2-5:-0.333612774307;DBP:-0.337481192859;PATZ1:-0.35123417806;SPI1:-0.357481314244;RREB1:-0.368589070516;ZEB1:-0.379497540119;HNF1A:-0.388954034846;GTF2I:-0.389696962545;RBPJ:-0.392886125439;HES1:-0.417026175796;IRF7:-0.421187740196;OCT4_SOX2{dimer}:-0.427779796983;ETS1,2:-0.428499350622;TFCP2:-0.429238313123;TFAP4:-0.432599547335;FOXN1:-0.435152321071;GATA6:-0.435748200433;NHLH1,2:-0.440125440531;AR:-0.443441110612;NFKB1_REL_RELA:-0.44538218093;SPIB:-0.449135681922;HNF4A_NR2F1,2:-0.451744125521;HOX{A6,A7,B6,B7}:-0.45248657193;RUNX1..3:-0.460846736117;SPZ1:-0.474806286253;SOX5:-0.477768869925;NANOG:-0.478878422586;NFIX:-0.502628100564;NKX2-2,8:-0.536916851022;SOX17:-0.543642736877;CUX2:-0.544151630145;MYFfamily:-0.564395677361;PRRX1,2:-0.567520648351;SREBF1,2:-0.572749600456;RFX2..5_RFXANK_RFXAP:-0.600227812154;HMX1:-0.610369999887;ALX4:-0.613540490412;ALX1:-0.621982707317;JUN:-0.686078244517;PAX8:-0.689675497609;DMAP1_NCOR{1,2}_SMARC:-0.717103452379;SOX2:-0.732849547387;TAL1_TCF{3,4,12}:-0.743048249909;NFE2L2:-0.745432173556;ATF2:-0.748665212278;CRX:-0.779120926339;TLX2:-0.786604578591;ATF6:-0.828816528207;T:-0.849311819389;ZNF423:-0.857332358926;EBF1:-0.875579790951;NR5A1,2:-0.879160077628;SMAD1..7,9:-0.889393876609;PBX1:-0.889539812478;NFE2L1:-0.955115363849;HSF1,2:-0.959299441157;FOXP3:-0.989729268671;MAFB:-1.02219421877;NR1H4:-1.02455358577;ZNF238:-1.03017405272;HAND1,2:-1.04652202993;ESRRA:-1.07026956115;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.09206098855;RORA:-1.24462324366;ESR1:-1.33855361898;NANOG{mouse}:-1.3979898548;TGIF1:-1.41341819801;FOX{F1,F2,J1}:-1.45571060634
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10783-110G9;search_select_hide=table117:FF:10783-110G9
}}
}}

Latest revision as of 15:04, 3 June 2020

Name:thyroid carcinoma cell line:TCO-1
Species:Human (Homo sapiens)
Library ID:CNhs11872
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethyroid
dev stageNA
sexmale
ageunknown
cell typeunclassifiable
cell lineTCO-1
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005528
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11872 CAGE DRX008026 DRR008898
Accession ID Hg19

Library idBAMCTSS
CNhs11872 DRZ000323 DRZ001708
Accession ID Hg38

Library idBAMCTSS
CNhs11872 DRZ011673 DRZ013058
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.271
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.392
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.223
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0932
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0168
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.126
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.127
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0462
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.321
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0462
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0222
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0462
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0879
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.396
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.126
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.268
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.126
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0879
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.161
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11872

Jaspar motifP-value
MA0002.29.93538e-4
MA0003.10.138
MA0004.10.661
MA0006.10.748
MA0007.10.417
MA0009.10.895
MA0014.10.784
MA0017.10.0215
MA0018.20.396
MA0019.10.689
MA0024.10.00117
MA0025.10.216
MA0027.10.235
MA0028.12.47809e-7
MA0029.10.701
MA0030.10.958
MA0031.10.673
MA0035.20.186
MA0038.10.0597
MA0039.20.574
MA0040.10.849
MA0041.10.827
MA0042.10.967
MA0043.10.451
MA0046.10.0358
MA0047.20.618
MA0048.10.111
MA0050.10.846
MA0051.10.31
MA0052.10.333
MA0055.10.0215
MA0057.10.362
MA0058.10.937
MA0059.10.839
MA0060.12.84936e-6
MA0061.10.00456
MA0062.22.90865e-9
MA0065.20.0169
MA0066.10.209
MA0067.10.264
MA0068.10.218
MA0069.10.795
MA0070.10.917
MA0071.10.0726
MA0072.10.12
MA0073.10.918
MA0074.10.773
MA0076.13.8317e-8
MA0077.10.99
MA0078.10.22
MA0079.20.767
MA0080.25.59751e-8
MA0081.10.745
MA0083.10.611
MA0084.10.966
MA0087.10.0973
MA0088.10.122
MA0090.10.102
MA0091.10.0025
MA0092.10.243
MA0093.10.557
MA0099.20.999
MA0100.10.568
MA0101.10.166
MA0102.20.00511
MA0103.10.0841
MA0104.20.633
MA0105.12.73792e-4
MA0106.10.84
MA0107.10.0551
MA0108.20.0797
MA0111.10.548
MA0112.26.94729e-4
MA0113.10.21
MA0114.10.0773
MA0115.10.755
MA0116.10.00249
MA0117.10.283
MA0119.10.982
MA0122.10.772
MA0124.10.2
MA0125.10.677
MA0131.10.108
MA0135.10.129
MA0136.10.0377
MA0137.20.652
MA0138.20.223
MA0139.10.868
MA0140.10.654
MA0141.10.174
MA0142.10.0564
MA0143.10.0115
MA0144.10.444
MA0145.10.094
MA0146.10.0227
MA0147.10.61
MA0148.10.46
MA0149.10.103
MA0150.10.0596
MA0152.10.48
MA0153.10.193
MA0154.10.00152
MA0155.10.0819
MA0156.10.0679
MA0157.10.925
MA0159.10.143
MA0160.10.0628
MA0162.10.73
MA0163.11.87462e-4
MA0164.10.279
MA0258.10.00646
MA0259.10.202



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11872

Novel motifP-value
10.249
100.671
1000.41
1010.678
1020.959
1030.084
1040.941
1050.0701
1060.0413
1070.117
1080.859
1090.682
110.159
1100.575
1110.12
1120.0358
1130.12
1140.0182
1150.79
1160.592
1170.446
1180.641
1190.0959
120.963
1200.637
1210.939
1220.73
1230.378
1240.0199
1250.903
1260.718
1270.638
1280.00225
1290.023
130.765
1300.0744
1310.533
1320.774
1330.214
1340.177
1350.111
1360.116
1370.168
1380.522
1398.94489e-5
140.361
1400.165
1410.0577
1420.0521
1430.103
1440.875
1450.311
1460.406
1470.989
1480.0654
1490.0589
150.143
1500.826
1510.294
1520.477
1530.634
1540.549
1550.334
1560.22
1570.173
1580.0519
1590.201
160.28
1600.811
1610.701
1620.922
1630.386
1640.661
1650.49
1660.806
1670.719
1680.712
1690.0199
170.118
180.14
190.104
20.212
200.217
210.359
220.151
230.0152
240.826
250.47
260.707
270.101
280.865
290.699
30.291
300.937
310.497
320.262
330.411
340.128
350.0752
360.836
370.208
380.378
390.867
40.698
400.795
410.0173
420.637
430.0874
440.378
450.251
460.128
470.282
480.609
490.0917
50.0473
500.893
510.248
520.11
530.62
540.271
550.248
560.281
570.574
580.287
590.0463
60.813
600.0861
610.753
620.0927
630.409
640.544
650.0552
660.063
670.979
680.56
690.482
70.303
700.336
710.23
720.28
730.505
740.568
750.196
760.462
770.197
780.384
790.209
80.556
800.0318
810.245
820.0178
830.53
840.5
850.0122
860.23
870.766
880.98
890.0399
90.181
900.177
910.347
920.0107
930.0588
940.138
950.533
960.127
970.724
980.528
990.44



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11872


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101610 (thyroid cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

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