FF:10791-110H8: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	keratoacanthoma cell line:HKA-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11880
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	female
age	77
cell type	unclassifiable
cell line	HKA-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005555

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11880		CAGE		DRX007910		DRR008782

Accession ID Hg19

Library id		BAM		CTSS
CNhs11880		DRZ000207		DRZ001592

Accession ID Hg38

Library id		BAM		CTSS
CNhs11880		DRZ011557		DRZ012942

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.316
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.28
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.1
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.671
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0248
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.94
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.126
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0374
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.313
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.126
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11880

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0188
MA0003.1	MA0003.1	0.0511
MA0004.1	MA0004.1	0.0935
MA0006.1	MA0006.1	0.398
MA0007.1	MA0007.1	0.857
MA0009.1	MA0009.1	0.204
MA0014.1	MA0014.1	0.19
MA0017.1	MA0017.1	0.357
MA0018.2	MA0018.2	0.805
MA0019.1	MA0019.1	0.445
MA0024.1	MA0024.1	0.00884
MA0025.1	MA0025.1	0.873
MA0027.1	MA0027.1	0.382
MA0028.1	MA0028.1	4.33315e-5
MA0029.1	MA0029.1	0.598
MA0030.1	MA0030.1	0.399
MA0031.1	MA0031.1	0.441
MA0035.2	MA0035.2	0.321
MA0038.1	MA0038.1	0.973
MA0039.2	MA0039.2	0.00423
MA0040.1	MA0040.1	0.3
MA0041.1	MA0041.1	0.286
MA0042.1	MA0042.1	0.702
MA0043.1	MA0043.1	0.231
MA0046.1	MA0046.1	0.659
MA0047.2	MA0047.2	0.811
MA0048.1	MA0048.1	0.242
MA0050.1	MA0050.1	8.28422e-6
MA0051.1	MA0051.1	0.00179
MA0052.1	MA0052.1	0.065
MA0055.1	MA0055.1	4.7466e-4
MA0057.1	MA0057.1	0.13
MA0058.1	MA0058.1	0.0276
MA0059.1	MA0059.1	0.186
MA0060.1	MA0060.1	2.52493e-4
MA0061.1	MA0061.1	4.50412e-4
MA0062.2	MA0062.2	6.11221e-6
MA0065.2	MA0065.2	0.805
MA0066.1	MA0066.1	0.966
MA0067.1	MA0067.1	0.222
MA0068.1	MA0068.1	0.694
MA0069.1	MA0069.1	0.497
MA0070.1	MA0070.1	0.671
MA0071.1	MA0071.1	0.44
MA0072.1	MA0072.1	0.922
MA0073.1	MA0073.1	0.897
MA0074.1	MA0074.1	0.923
MA0076.1	MA0076.1	4.0213e-5
MA0077.1	MA0077.1	0.665
MA0078.1	MA0078.1	0.151
MA0079.2	MA0079.2	0.358
MA0080.2	MA0080.2	7.92944e-8
MA0081.1	MA0081.1	0.0594
MA0083.1	MA0083.1	6.85563e-6
MA0084.1	MA0084.1	0.246
MA0087.1	MA0087.1	0.97
MA0088.1	MA0088.1	0.805
MA0090.1	MA0090.1	0.422
MA0091.1	MA0091.1	0.0311
MA0092.1	MA0092.1	0.34
MA0093.1	MA0093.1	0.0741
MA0099.2	MA0099.2	0.73
MA0100.1	MA0100.1	0.571
MA0101.1	MA0101.1	0.00226
MA0102.2	MA0102.2	0.297
MA0103.1	MA0103.1	2.01399e-6
MA0104.2	MA0104.2	0.0493
MA0105.1	MA0105.1	1.04486e-4
MA0106.1	MA0106.1	6.61548e-5
MA0107.1	MA0107.1	1.43991e-4
MA0108.2	MA0108.2	0.00391
MA0111.1	MA0111.1	0.467
MA0112.2	MA0112.2	0.295
MA0113.1	MA0113.1	0.666
MA0114.1	MA0114.1	0.721
MA0115.1	MA0115.1	0.988
MA0116.1	MA0116.1	0.0338
MA0117.1	MA0117.1	0.249
MA0119.1	MA0119.1	0.422
MA0122.1	MA0122.1	0.288
MA0124.1	MA0124.1	0.123
MA0125.1	MA0125.1	0.00911
MA0131.1	MA0131.1	0.162
MA0135.1	MA0135.1	0.989
MA0136.1	MA0136.1	2.79295e-4
MA0137.2	MA0137.2	1.18998e-4
MA0138.2	MA0138.2	0.586
MA0139.1	MA0139.1	0.857
MA0140.1	MA0140.1	0.917
MA0141.1	MA0141.1	0.39
MA0142.1	MA0142.1	0.065
MA0143.1	MA0143.1	0.597
MA0144.1	MA0144.1	0.0313
MA0145.1	MA0145.1	0.693
MA0146.1	MA0146.1	0.338
MA0147.1	MA0147.1	0.144
MA0148.1	MA0148.1	0.251
MA0149.1	MA0149.1	0.0141
MA0150.1	MA0150.1	0.896
MA0152.1	MA0152.1	0.497
MA0153.1	MA0153.1	0.993
MA0154.1	MA0154.1	0.00343
MA0155.1	MA0155.1	0.0583
MA0156.1	MA0156.1	0.0369
MA0157.1	MA0157.1	0.679
MA0159.1	MA0159.1	0.947
MA0160.1	MA0160.1	0.783
MA0162.1	MA0162.1	0.935
MA0163.1	MA0163.1	0.0113
MA0164.1	MA0164.1	0.633
MA0258.1	MA0258.1	0.849
MA0259.1	MA0259.1	0.387

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11880

Novel motif	Logo	P-value
1	1	0.441
10	10	0.678
100	100	0.107
101	101	0.898
102	102	0.262
103	103	0.55
104	104	0.958
105	105	0.669
106	106	0.317
107	107	0.461
108	108	0.915
109	109	0.00826
11	11	0.51
110	110	0.764
111	111	0.436
112	112	0.622
113	113	0.291
114	114	0.774
115	115	0.514
116	116	0.385
117	117	0.585
118	118	0.331
119	119	0.143
12	12	0.661
120	120	0.293
121	121	0.468
122	122	0.118
123	123	0.025
124	124	0.0318
125	125	0.727
126	126	0.621
127	127	0.899
128	128	0.363
129	129	0.384
13	13	0.00934
130	130	0.764
131	131	0.0767
132	132	0.597
133	133	0.0259
134	134	0.262
135	135	0.0239
136	136	0.00495
137	137	0.0137
138	138	0.474
139	139	0.515
14	14	0.984
140	140	0.715
141	141	0.0552
142	142	0.208
143	143	0.106
144	144	0.48
145	145	0.383
146	146	0.0868
147	147	0.871
148	148	0.621
149	149	0.29
15	15	0.875
150	150	0.848
151	151	0.938
152	152	0.259
153	153	0.836
154	154	0.598
155	155	0.32
156	156	0.985
157	157	0.947
158	158	0.45
159	159	0.204
16	16	0.557
160	160	0.958
161	161	0.501
162	162	0.691
163	163	0.0748
164	164	0.218
165	165	0.82
166	166	0.0608
167	167	0.0666
168	168	0.265
169	169	0.948
17	17	0.244
18	18	0.195
19	19	0.00986
2	2	0.607
20	20	0.334
21	21	0.67
22	22	0.526
23	23	0.00735
24	24	0.189
25	25	0.976
26	26	0.0583
27	27	0.593
28	28	0.389
29	29	0.401
3	3	0.805
30	30	0.533
31	31	0.586
32	32	0.131
33	33	0.335
34	34	0.199
35	35	0.241
36	36	0.518
37	37	0.745
38	38	0.437
39	39	0.786
4	4	0.773
40	40	0.0208
41	41	0.143
42	42	0.746
43	43	0.49
44	44	0.0672
45	45	0.763
46	46	0.939
47	47	0.466
48	48	0.153
49	49	0.369
5	5	0.524
50	50	0.901
51	51	0.948
52	52	0.663
53	53	0.869
54	54	0.674
55	55	0.691
56	56	0.746
57	57	0.22
58	58	0.76
59	59	0.446
6	6	0.678
60	60	0.807
61	61	0.924
62	62	0.488
63	63	0.727
64	64	0.365
65	65	0.896
66	66	0.0769
67	67	0.753
68	68	0.751
69	69	0.139
7	7	0.48
70	70	0.579
71	71	0.396
72	72	0.672
73	73	0.0454
74	74	8.51995e-4
75	75	0.322
76	76	0.949
77	77	0.729
78	78	0.00457
79	79	0.404
8	8	0.288
80	80	0.313
81	81	0.249
82	82	0.839
83	83	0.276
84	84	0.432
85	85	0.39
86	86	0.142
87	87	0.00422
88	88	0.926
89	89	0.923
9	9	0.219
90	90	0.27
91	91	0.115
92	92	0.366
93	93	0.684
94	94	0.0889
95	95	0.0421
96	96	0.139
97	97	0.893
98	98	0.984
99	99	0.925

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11880

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3149 keratoacanthoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0000014 zone of skin

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3451 (skin carcinoma)
3151 (skin squamous cell carcinoma)
4159 (skin cancer)
0060122 (integumentary system cancer)
3149 (keratoacanthoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0002097 (skin of body)
0002199 (integument)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007804
+|DRA_sample_Accession=CAGE@SAMD00005555
-|accession_numbers=CAGE;DRX007910;DRR008782;DRZ000207;DRZ001592
+|accession_numbers=CAGE;DRX007910;DRR008782;DRZ000207;DRZ001592;DRZ011557;DRZ012942
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0002097,UBERON:0002199,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.33!212.33!SOX15;;chr6:1312325..1312340,+!p1@FOXQ1!2.27!291.49!FOXQ1;;chr3:189507432..189507459,+!p1@TP63!2.10!123.78!TP63;;chr4:57547454..57547469,-!p1@HOPX!1.89!76.14!HOPX;;chr5:2751762..2751784,-!p1@IRX2!1.81!63.40!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.79!68.09!IRF6;;chr15:101069113..101069169,-!p1@CERS3!1.78!59.71!CERS3;;chr17:48072574..48072597,-!p1@DLX3!1.78!59.37!DLX3;;chr1:209979411..209979433,-!p2@IRF6!1.74!53.33!IRF6;;chr22:19748231..19748317,+!p1@TBX1!1.74!53.33!TBX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.69!54.00!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.65!443.78!KLF5;;chr12:54785074..54785122,-!p2@ZNF385A!1.65!65.41!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.61!80.84!SOX15;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.61!39.58!ZBED1;;chr11:34642612..34642646,+!p1@EHF!1.58!37.23!EHF;;chr5:134369905..134369972,-!p1@PITX1!1.55!51.66!PITX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.55!34.89!TFCP2L1;;chr9:100615499..100615519,+!p1@FOXE1!1.45!27.17!FOXE1;;chr17:80797886..80797906,-!p1@ZNF750!1.41!24.82!ZNF750;;chr10:8095593..8095625,+!p3@GATA3!1.39!27.84!GATA3;;chr1:6479968..6479986,-!p1@HES2!1.36!22.14!HES2;;chr8:102504651..102504683,+!p1@GRHL2!1.35!21.47!GRHL2;;chr1:201979743..201979762,+!p1@ELF3!1.35!21.13!ELF3;;chr2:172967621..172967637,-!p1@DLX2!1.33!54.34!DLX2;;chr1:24645832..24645853,+!p1@GRHL3!1.33!20.46!GRHL3;;chr20:55204351..55204377,+!p1@TFAP2C!1.32!25.49!TFAP2C;;chr15:83953397..83953425,-!p1@BNC1!1.29!21.13!BNC1;;chr17:26833339..26833378,+!p1@FOXN1!1.29!18.45!FOXN1;;chr12:54332608..54332636,+!p1@HOXC13!1.29!18.45!HOXC13;;chr5:134369879..134369898,-!p2@PITX1!1.29!18.45!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.27!17.44!ELF3;;chr20:39317868..39317884,-!p1@MAFB!1.26!197.24!MAFB;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.80!TFAP2A;;chr12:54332652..54332671,+!p2@HOXC13!1.26!17.11!HOXC13;;chr6:10412600..10412637,-!p1@TFAP2A!1.24!26.83!TFAP2A;;chr5:1887070..1887114,-!p1@IRX4!1.23!16.10!IRX4;;chr5:3595934..3595957,+!p2@IRX1!1.23!16.10!IRX1;;chr17:46687959..46688007,-!p2@HOXB7!1.16!18.45!HOXB7;;chr1:24645921..24645973,+!p2@GRHL3!1.16!13.42!GRHL3;;chr12:54332687..54332701,+!p3@HOXC13!1.13!12.41!HOXC13;;chr6:1389789..1389821,+!p1@FOXF2!1.09!15.77!FOXF2;;chr7:96654133..96654150,-!p1@DLX5!1.08!11.07!DLX5;;chr5:3595977..3595999,+!p1@IRX1!1.07!10.73!IRX1;;chr12:53625966..53626012,-!p2@RARG!1.06!28.18!RARG;;chr20:50721803..50721857,-!p2@ZFP64!1.06!16.44!ZFP64;;chr5:1887052..1887065,-!p2@IRX4!1.06!10.40!IRX4;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.40!IRX2;;chr13:73636252..73636307,+!p2@KLF5!1.03!11.40!KLF5;;chr18:45935720..45935772,-!p1@ZBTB7C!1.03!9.73!ZBTB7C;;chr9:137218281..137218340,+!p1@RXRA!1.02!271.03!RXRA;;chr8:102504979..102505010,+!p2@GRHL2!1.00!9.06!GRHL2;;chr6:1389989..1390019,+!p2@FOXF2!0.99!8.72!FOXF2;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.72!SOX7;;chr2:119605214..119605230,-!p1@EN1!0.99!8.72!EN1;;chr11:65554528..65554546,+!p1@OVOL1!0.99!8.72!OVOL1;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.39!TFAP2A;;chr6:1312155..1312187,+!p2@FOXQ1!0.97!8.39!FOXQ1;;chr6:28321909..28321965,-!p3@ZNF323!0.94!7.71!ZNF323;;chr1:24646263..24646277,+!p4@GRHL3!0.94!7.71!GRHL3;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.71!HOXD8;;chr4:111544219..111544240,-!p1@PITX2!0.94!7.71!PITX2;;chr9:137218341..137218361,+!p2@RXRA!0.93!32.20!RXRA;;chrX:129244655..129244697,-!p4@ELF4!0.93!13.75!ELF4;;chr5:3595961..3595975,+!p3@IRX1!0.92!7.38!IRX1;;chr6:10419768..10419819,-!p6@TFAP2A!0.92!7.38!TFAP2A;;chr12:54332675..54332686,+!p4@HOXC13!0.92!7.38!HOXC13;;chr13:28543285..28543314,-!p2@CDX2!0.92!7.38!CDX2;;chr9:100616439..100616476,+!p3@FOXE1!0.91!7.04!FOXE1;;chr3:189507460..189507471,+!p3@TP63!0.91!7.04!TP63;;chr1:209979449..209979460,-!p3@IRF6!0.91!7.04!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!0.91!7.04!OVOL2;;chr16:79634595..79634620,-!p2@MAF!0.88!12.41!MAF;;chr8:123875520..123875536,+!p7@ZHX2!0.87!6.37!ZHX2;;chr13:73636516..73636532,+!p3@KLF5!0.85!7.04!KLF5;;chr2:172949484..172949522,+!p1@DLX1!0.85!6.04!DLX1;;chr3:169381420..169381535,-!p1@MECOM!0.84!7.04!MECOM;;chr19:33793430..33793447,-!p1@CEBPA!0.83!25.83!CEBPA;;chr1:153939955..153940009,+!p2@CREB3L4!0.83!14.09!CREB3L4;;chr8:123875175..123875188,+!p22@ZHX2!0.83!5.70!ZHX2;;chr10:126138597..126138612,-!p1@NKX1-2!0.83!5.70!NKX1-2;;chr14:37131058..37131139,+!p1@PAX9!0.83!5.70!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!0.83!5.70!FOXA1;;chr20:46130619..46130664,+!p1@NCOA3!0.82!161.68!NCOA3;;chr1:164528410..164528428,+!p1@PBX1!0.82!45.62!PBX1;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.73!HOXA1;;chr9:129376201..129376225,+!p1@LMX1B!0.80!5.37!LMX1B;;chr2:176969179..176969226,+!p2@HOXD11!0.80!5.37!HOXD11;;chr2:176972047..176972063,+!p7@HOXD11!0.78!5.03!HOXD11;;chr13:73636621..73636647,+!p4@KLF5!0.78!5.03!KLF5;;chr1:10856665..10856683,-!p4@CASZ1!0.78!5.03!CASZ1;;chr1:42501569..42501614,-!p1@HIVEP3!0.77!10.73!HIVEP3;;chr15:31619326..31619390,+!p2@KLF13!0.76!60.38!KLF13;;chr19:45908292..45908374,-!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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10791-110H8
 |is_a=DOID:3149;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0000014
 |is_obsolete=
 |library_id=CNhs11880
-|library_id_phase_based=1:CNhs11880
+|library_id_phase_based=2:CNhs11880
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10791
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10791
 |name=keratoacanthoma cell line:HKA-1
 |namespace=FANTOM5
@@ Line 50: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11880,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10791-110H8;search_select_hide=table117:FF:10791-110H8
 }}

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FF:10791-110H8: Difference between revisions

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Latest revision as of 15:05, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0