FF:10791-110H8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005555 | ||
|accession_numbers=CAGE;DRX007910;DRR008782;DRZ000207;DRZ001592;DRZ011557;DRZ012942 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0002097,UBERON:0002199,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3451,DOID:3151,DOID:4159,DOID:0060122,DOID:3149 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:10791-110H8 | |fonse_cell_line=FF:10791-110H8 | ||
|fonse_cell_line_closure=FF:10791-110H8 | |fonse_cell_line_closure=FF:10791-110H8 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/keratoacanthoma%2520cell%2520line%253aHKA-1.CNhs11880.10791-110H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10791-110H8 | |id=FF:10791-110H8 | ||
|is_a=DOID:3149;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0000014 | |is_a=DOID:3149;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0000014 | ||
|is_obsolete= | |||
|library_id=CNhs11880 | |||
|library_id_phase_based=2:CNhs11880 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10791 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10791 | |||
|name=keratoacanthoma cell line:HKA-1 | |name=keratoacanthoma cell line:HKA-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11880,LSID830,release010,COMPLETED | |profile_hcage=CNhs11880,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.209220412490434,0,-0.0544196331366977,0.115984073298223,0,0,0,0,0,0,0,0,0,0,0.524791002910051,0,0,0.450785506788413,0,0,0,0,0,0.468300125198318,0,0,-0.0073339370387297,0,0,0,0,0,0,0,0,0,0,0,0,0.137229293767175,0.125622652740133,0,0,0,0,0,0,0,0.0385963052572319,0,0,0,0,0,0,0.125622652740133,0.427798641667446,0,0,0.125598871843719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169680892103206,0.0282739188726592,0,0,0,0,0.0275873015024262,0.109103346857581,0,0,0,0,0,0,0,0,0,0,0.125622652740133,0,0,0,0,0,0,-0.0335622675523947,0.125622652740133,0,0,-0.0160114857015692,-0.148266548678435,0,0,0.0889901358493084,0,0,0 | |||
|repeat_enrich_byname=0,0.125622652740133,0,0.222942499056816,0.0275873015024262,0,0,0.125622652740133,0,0,0,0,0.222942499056816,0,0,0,-0.0242363762287481,0,0.0507047841580422,0.381275860386579,0,0,-0.301656434169438,0,0,0,0,0,0,0,0,0.36953844257682,-0.00249721421243213,0,-0.0504125515893149,0,0,0.125622652740133,0,-0.0186252810838506,-0.305472230898407,0,-0.023059684846147,0.301194181499452,0,0,0,0,0.054966158490767,0,0.00474316894639193,-0.0827201683234173,0.00133091095400958,-0.175422820076039,-0.055712496781182,0,0,0,-0.575709555974005,0.747731395650866,0,0,-0.0589685253818075,-0.181349618560659,0,0,-0.391044581551635,0,0.26750302449202,0.113968444121343,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.100687910751833,0,0.125622652740133,0.524791002910051,0,0.0675550298689951,0,0,-0.15034365689975,0.209310666652195,-0.070395561264061,-0.120263400145448,0,-0.176767074269781,0.0635754099557453,0.111857447101597,-0.0518436338283537,-0.147401849371139,0.112415033056878,0,-0.203594894372878,-0.483875876507286,0.170146677910566,-0.028657123046955,-0.01845132078271,-0.325929511981803,0.438050712040402,0,0,0,0.291702975825745,0,0,0.0346762884332771,0.0897126970772213,-0.177125221688052,0.447279646334246,0.21018035791133,-0.273410439280494,-0.0395325284566706,-0.331813800156462,0.113565188332967,-0.159176823448675,0.0118389126797638,0.524791002910051,0,0.0202866892265041,0.74393641859331,0.210403501729667,0,0.319954318690371,0.735587519423984,0,-0.221178290496249,0.0257232922341535,0,0,-0.15110072344061,0,0,0,0,0,0.129019227938376,0.0267658784362087,-0.107232908815412,0,0.054209682449987,0,0.0849867574431647,0,0.0237148199999866,-0.0381097425008703,-0.026343529502086,0.180694451959234,0,-0.125278709687331,0.385021821620982,-0.124035477308603,0.0565478377453184,0.311091615764995,0.095757741132615,-0.142122630283951,0.208215857063579,-0.0597223359257932,0,0.0374958202648449,0.0140013357326432,-0.88354475051838,0.389944621316763,0,-0.185142270354408,0,-0.162242640929256,0,-0.225201969639646,0.0496346504543568,-0.0325277054998999,0.382787625581961,0.199633648270683,0.0608632591414566,0,-0.278331656625681,0.0795285556241385,0,0.331724143964861,-0.123269714985464,0.84743842516697,-0.0247444305945068,0.242571316037531,0.212590114992349,0.0750202459942343,0,0.0138516221116955,0,0,-0.282744388387041,-0.0125335387075724,0,0.0135744087150192,-0.239664471636576,0.096938714385439,-0.115971073434934,0,0,0.771897582367045,0,0,-0.00181954668118922,0,0.352691080694511,-0.127703688746623,0,-0.108622809454255,0,0,0.192010676611645,0,-0.662538476154959,0,0,0.203428278685105,0,0,0,0,0.00086379700793987,0,0,0,0,0,0,0,0.277462647564235,-0.229210677476315,0.222942499056816,0,0,0,0,0,0,0,0,0,0.153336049101271,0,0.2465210269004,0,0,0,0,0.00721909650334168,0.0991601905120018,0,-0.00624005375749914,0,0.377788254604169,0,0,-0.0861409897892114,0,0,0,0.111471249528408,0.165212042003152,0.0263307687635486,0,0,0,0.09258404097503,0,0,0,0,-0.117336280890551,0,0,-0.285421107284695,0,-0.00627690866332942,-0.0815818795468414,0,0.077809048067653,-0.281025012049324,0.652120379278813,0,0.125622652740133,0.041049620816838,0,0,-0.334789566052514,0,0.125622652740133,0,0,0,0,0,0,0,-0.088691859659623,0,0,0,0,0,0,0,0,0,0,0,0.0734906115993135,-0.0922240566585104,0.222942499056816,0,0,0,0,0,0,0.40682673787519,0.22947367825283,0,0,0,0,0,0,0,0,0.415554852866755,0.125622652740133,0,0,0,0,0.427798641667446,0,0,0,0,0.106345493856312,0,0,-0.0544196331366977,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.268818369309955,0,0,0,0,0,0,0,0.152843209224711,0,0.125622652740133,0,0,-0.113884373708977,0,0,0,0.264742057787664,0,0.209220412490434,0,0,0,0,0,0,0.0628113263700665,0,0,0,0,0,0,0.125622652740133,0,0,0,0,0,0,0,-0.354935664307685,0,-0.28720751597291,0.073011607343286,0,0,0.117949025157325,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125622652740133,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.468300125198318,0,0,0.0194384397278818,0,0,0,0,0,0,0.188103173303915,0.2576214454614,-0.0459925611318351,0,0,0,-0.054385572482455,0,0,0,0.125622652740133,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450785506788413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222942499056816,0.111471249528408,0,0,0,0,0,0,0.0916112894647163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125622652740133,0.142924030788178,0,0,0,-0.0874635769169111,0,0,0,0,0,0,0.125622652740133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.103032114343669,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774005775010783,0,0.0412460205101055,0,0,0,0,0,0,0,0,0,0,0,0.125622652740133,0,0,0,0,0.421970362137432,0,0,0,0,0.0779855420792137,0,0,0,0,0,0,0,0.022273004497338,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385312414562864,0,0,0.388819744593718,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0.478942643137056,0.0771926105144639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111471249528408,-0.0306815757772917,-0.148266548678435,0,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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=31.98726 | |rna_weight_ug=31.98726 | ||
|sample_age=77 | |sample_age=77 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb1017 | |sample_cell_catalog=jcrb1017 | ||
|sample_cell_line=HKA-1 | |sample_cell_line=HKA-1 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.81898750587225e-245!GO:0005737;cytoplasm;1.37650239742322e-194!GO:0043226;organelle;3.21607811490687e-191!GO:0043229;intracellular organelle;1.48479214329297e-190!GO:0043231;intracellular membrane-bound organelle;2.32631990091029e-179!GO:0043227;membrane-bound organelle;3.32228662651649e-179!GO:0044422;organelle part;1.02110525111776e-157!GO:0044446;intracellular organelle part;3.27067786492669e-156!GO:0044444;cytoplasmic part;9.76904251006471e-135!GO:0032991;macromolecular complex;6.50963431972689e-107!GO:0044237;cellular metabolic process;4.57328981258118e-87!GO:0030529;ribonucleoprotein complex;1.68160783148201e-83!GO:0044238;primary metabolic process;5.57339275373871e-82!GO:0005739;mitochondrion;2.84443873601565e-81!GO:0043233;organelle lumen;1.14210759062654e-75!GO:0031974;membrane-enclosed lumen;1.14210759062654e-75!GO:0044428;nuclear part;2.66151424176108e-71!GO:0043170;macromolecule metabolic process;2.84967472177696e-71!GO:0003723;RNA binding;2.7814330791991e-66!GO:0005634;nucleus;1.24863206991256e-64!GO:0005515;protein binding;9.61465581682166e-61!GO:0043234;protein complex;1.07240179641688e-56!GO:0044429;mitochondrial part;1.32753754030273e-55!GO:0005840;ribosome;4.93590294985788e-55!GO:0031090;organelle membrane;1.25165636863736e-51!GO:0006412;translation;9.39039889732547e-50!GO:0003735;structural constituent of ribosome;6.95560507913195e-49!GO:0019538;protein metabolic process;7.20463801872501e-49!GO:0006396;RNA processing;5.45466055393043e-46!GO:0031967;organelle envelope;3.18978707571071e-45!GO:0031975;envelope;5.25282981861768e-45!GO:0044267;cellular protein metabolic process;2.42216991623689e-44!GO:0044260;cellular macromolecule metabolic process;4.680526748271e-44!GO:0043228;non-membrane-bound organelle;1.6520446393687e-43!GO:0043232;intracellular non-membrane-bound organelle;1.6520446393687e-43!GO:0031981;nuclear lumen;5.15398688467196e-43!GO:0033279;ribosomal subunit;2.24421227340931e-42!GO:0005829;cytosol;1.16844051167926e-41!GO:0044249;cellular biosynthetic process;4.0305761117041e-41!GO:0016043;cellular component organization and biogenesis;5.92360733107413e-41!GO:0015031;protein transport;8.62615017860348e-41!GO:0033036;macromolecule localization;1.67747829724624e-40!GO:0009058;biosynthetic process;2.85651133824544e-40!GO:0043283;biopolymer metabolic process;2.29498506291717e-39!GO:0008104;protein localization;2.13802930533722e-37!GO:0045184;establishment of protein localization;4.87824887201447e-37!GO:0009059;macromolecule biosynthetic process;4.64076068176426e-35!GO:0016071;mRNA metabolic process;6.22618319630005e-35!GO:0005740;mitochondrial envelope;1.21830621723605e-33!GO:0065003;macromolecular complex assembly;3.76118526959419e-33!GO:0010467;gene expression;5.44321986300424e-33!GO:0031966;mitochondrial membrane;2.16368394453505e-32!GO:0046907;intracellular transport;7.42489289306361e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.38508944949348e-32!GO:0019866;organelle inner membrane;1.69602534450365e-31!GO:0008380;RNA splicing;3.69642519753323e-31!GO:0006996;organelle organization and biogenesis;9.70750952404727e-30!GO:0006259;DNA metabolic process;2.03599728645724e-29!GO:0005743;mitochondrial inner membrane;2.19524028163712e-29!GO:0006397;mRNA processing;3.32377633879434e-29!GO:0022607;cellular component assembly;4.90214971866712e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.99875573187994e-29!GO:0006886;intracellular protein transport;6.03799099295053e-29!GO:0005654;nucleoplasm;2.6153587502015e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.56040408521317e-27!GO:0031980;mitochondrial lumen;5.23419711293933e-27!GO:0005759;mitochondrial matrix;5.23419711293933e-27!GO:0006119;oxidative phosphorylation;2.78922942169278e-26!GO:0044455;mitochondrial membrane part;1.40850766060077e-24!GO:0007049;cell cycle;4.55769139086048e-24!GO:0044445;cytosolic part;1.11276417858345e-23!GO:0044451;nucleoplasm part;2.18332385218769e-23!GO:0005681;spliceosome;2.69917913434544e-23!GO:0000166;nucleotide binding;3.27541793428357e-23!GO:0015934;large ribosomal subunit;8.71826742268431e-23!GO:0015935;small ribosomal subunit;1.17357619804083e-20!GO:0051641;cellular localization;1.31416113528316e-20!GO:0051649;establishment of cellular localization;3.83345853722941e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.32848596548249e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.93607696252976e-20!GO:0016462;pyrophosphatase activity;5.37963059699615e-20!GO:0005746;mitochondrial respiratory chain;9.13230465193494e-20!GO:0012505;endomembrane system;1.37077940774978e-19!GO:0017111;nucleoside-triphosphatase activity;5.19083887391228e-19!GO:0051186;cofactor metabolic process;1.50138629340791e-18!GO:0005761;mitochondrial ribosome;3.09158383483333e-18!GO:0000313;organellar ribosome;3.09158383483333e-18!GO:0005694;chromosome;3.83391182129769e-18!GO:0016874;ligase activity;4.70023002613116e-18!GO:0048770;pigment granule;5.87504086976661e-18!GO:0042470;melanosome;5.87504086976661e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.87593973802527e-18!GO:0005783;endoplasmic reticulum;8.78874849879446e-18!GO:0044265;cellular macromolecule catabolic process;9.69596014659405e-18!GO:0050136;NADH dehydrogenase (quinone) activity;2.47402692907064e-17!GO:0003954;NADH dehydrogenase activity;2.47402692907064e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.47402692907064e-17!GO:0022402;cell cycle process;2.70382757967991e-17!GO:0006512;ubiquitin cycle;5.43201935609124e-17!GO:0043285;biopolymer catabolic process;6.97245503603061e-17!GO:0003676;nucleic acid binding;1.13901559085551e-16!GO:0006974;response to DNA damage stimulus;2.89361055574451e-16!GO:0032553;ribonucleotide binding;2.98645378110224e-16!GO:0032555;purine ribonucleotide binding;2.98645378110224e-16!GO:0000278;mitotic cell cycle;3.21431192388034e-16!GO:0009057;macromolecule catabolic process;3.21614882332355e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.29138007723133e-16!GO:0017076;purine nucleotide binding;3.30886250326007e-16!GO:0006457;protein folding;3.31536855614213e-16!GO:0044248;cellular catabolic process;3.5010103455316e-16!GO:0005730;nucleolus;9.07422352927638e-16!GO:0044427;chromosomal part;1.29987302968201e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.35038951641011e-15!GO:0042773;ATP synthesis coupled electron transport;1.35038951641011e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.40606554561704e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.8657781811794e-15!GO:0008134;transcription factor binding;1.89358963350417e-15!GO:0022618;protein-RNA complex assembly;1.93278270757916e-15!GO:0044257;cellular protein catabolic process;2.68380158051182e-15!GO:0019941;modification-dependent protein catabolic process;2.77974622258743e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.77974622258743e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.25009192365066e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.5064074564684e-15!GO:0030964;NADH dehydrogenase complex (quinone);4.59636646117583e-15!GO:0045271;respiratory chain complex I;4.59636646117583e-15!GO:0005747;mitochondrial respiratory chain complex I;4.59636646117583e-15!GO:0006732;coenzyme metabolic process;7.79576428724986e-15!GO:0006605;protein targeting;1.26159998289812e-14!GO:0044432;endoplasmic reticulum part;1.26159998289812e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.52507292441983e-14!GO:0032559;adenyl ribonucleotide binding;2.94651147795323e-14!GO:0043412;biopolymer modification;3.06177941491577e-14!GO:0005524;ATP binding;3.07422131850579e-14!GO:0030554;adenyl nucleotide binding;4.81553241390728e-14!GO:0030163;protein catabolic process;6.39716176411731e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.14645155991026e-13!GO:0051276;chromosome organization and biogenesis;1.37040465117909e-13!GO:0008135;translation factor activity, nucleic acid binding;1.37040465117909e-13!GO:0006281;DNA repair;2.19286189265312e-13!GO:0009055;electron carrier activity;3.57747428685356e-13!GO:0042254;ribosome biogenesis and assembly;4.82359499032088e-13!GO:0006464;protein modification process;1.92986888429446e-12!GO:0016887;ATPase activity;2.11455062826619e-12!GO:0005635;nuclear envelope;2.19261651254076e-12!GO:0016070;RNA metabolic process;2.89600816049899e-12!GO:0051082;unfolded protein binding;3.05469962252179e-12!GO:0042623;ATPase activity, coupled;3.78508850997069e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;5.51019304507112e-12!GO:0006366;transcription from RNA polymerase II promoter;7.54596323953644e-12!GO:0043687;post-translational protein modification;7.58828118003582e-12!GO:0051188;cofactor biosynthetic process;8.77201995690473e-12!GO:0048193;Golgi vesicle transport;9.1449038829859e-12!GO:0022403;cell cycle phase;9.43114641180474e-12!GO:0051301;cell division;1.05396824254063e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.12895174717265e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.69618824269423e-11!GO:0000375;RNA splicing, via transesterification reactions;1.69618824269423e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.69618824269423e-11!GO:0000087;M phase of mitotic cell cycle;1.7354793695232e-11!GO:0031965;nuclear membrane;1.76754625106942e-11!GO:0006323;DNA packaging;1.89471529080376e-11!GO:0005789;endoplasmic reticulum membrane;1.90271325387587e-11!GO:0044453;nuclear membrane part;2.09271352890106e-11!GO:0007067;mitosis;2.12453296198383e-11!GO:0009719;response to endogenous stimulus;2.30707053651205e-11!GO:0005794;Golgi apparatus;3.1467431954783e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.25444388452076e-11!GO:0016604;nuclear body;5.33715285205703e-11!GO:0009056;catabolic process;1.96898217498789e-10!GO:0000074;regulation of progression through cell cycle;2.24158117680802e-10!GO:0003743;translation initiation factor activity;2.31615326144296e-10!GO:0051726;regulation of cell cycle;2.39750081035385e-10!GO:0016192;vesicle-mediated transport;2.51268320557555e-10!GO:0006461;protein complex assembly;2.79358823912749e-10!GO:0006399;tRNA metabolic process;2.89151046907084e-10!GO:0008565;protein transporter activity;2.95648196490142e-10!GO:0000785;chromatin;3.15724461131218e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.15724461131218e-10!GO:0006260;DNA replication;3.60644571228056e-10!GO:0065004;protein-DNA complex assembly;5.85669532892001e-10!GO:0003712;transcription cofactor activity;6.98170641539576e-10!GO:0015986;ATP synthesis coupled proton transport;7.59983505863921e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.59983505863921e-10!GO:0012501;programmed cell death;7.97380324611901e-10!GO:0005643;nuclear pore;8.23400807929422e-10!GO:0006913;nucleocytoplasmic transport;8.50174494941698e-10!GO:0006446;regulation of translational initiation;8.93464242021296e-10!GO:0006915;apoptosis;1.0023645490158e-09!GO:0009060;aerobic respiration;1.27858033890689e-09!GO:0006413;translational initiation;1.30600504193524e-09!GO:0051169;nuclear transport;2.10740505775577e-09!GO:0009259;ribonucleotide metabolic process;2.1426027858451e-09!GO:0009108;coenzyme biosynthetic process;2.37164093192534e-09!GO:0006163;purine nucleotide metabolic process;2.46739505959075e-09!GO:0016787;hydrolase activity;3.04312393692523e-09!GO:0005768;endosome;3.73476136654972e-09!GO:0000279;M phase;3.79106533823202e-09!GO:0006364;rRNA processing;4.93792136030227e-09!GO:0045333;cellular respiration;4.95843244326815e-09!GO:0008639;small protein conjugating enzyme activity;5.37519782327409e-09!GO:0016491;oxidoreductase activity;8.43267204391658e-09!GO:0016072;rRNA metabolic process;8.89478481136357e-09!GO:0009150;purine ribonucleotide metabolic process;9.32494094378022e-09!GO:0006333;chromatin assembly or disassembly;9.50768985761528e-09!GO:0004386;helicase activity;1.06269200530432e-08!GO:0046034;ATP metabolic process;1.0628080869143e-08!GO:0006754;ATP biosynthetic process;1.13655937113413e-08!GO:0006753;nucleoside phosphate metabolic process;1.13655937113413e-08!GO:0019829;cation-transporting ATPase activity;1.20396056852253e-08!GO:0006164;purine nucleotide biosynthetic process;1.31805694531273e-08!GO:0016607;nuclear speck;1.33764654761664e-08!GO:0004842;ubiquitin-protein ligase activity;1.37935970105083e-08!GO:0008219;cell death;1.39101036389111e-08!GO:0016265;death;1.39101036389111e-08!GO:0050657;nucleic acid transport;1.87064991437645e-08!GO:0051236;establishment of RNA localization;1.87064991437645e-08!GO:0050658;RNA transport;1.87064991437645e-08!GO:0048475;coated membrane;1.87064991437645e-08!GO:0030117;membrane coat;1.87064991437645e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.88294650941097e-08!GO:0043623;cellular protein complex assembly;1.92950921265045e-08!GO:0065002;intracellular protein transport across a membrane;1.94418988835322e-08!GO:0019787;small conjugating protein ligase activity;2.46796952891507e-08!GO:0017038;protein import;2.54337406327481e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.58243229092733e-08!GO:0006403;RNA localization;2.81932067086492e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.26720215366919e-08!GO:0009260;ribonucleotide biosynthetic process;3.59241551539852e-08!GO:0006099;tricarboxylic acid cycle;3.85944428083861e-08!GO:0046356;acetyl-CoA catabolic process;3.85944428083861e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.88145063507357e-08!GO:0046930;pore complex;5.14552981180804e-08!GO:0009141;nucleoside triphosphate metabolic process;7.52799765600319e-08!GO:0006084;acetyl-CoA metabolic process;7.8239705348206e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.60630365896625e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.19890413386495e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.02046090704092e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.02046090704092e-07!GO:0008026;ATP-dependent helicase activity;1.10222358310756e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.14934229300459e-07!GO:0007005;mitochondrion organization and biogenesis;1.17126833676043e-07!GO:0005667;transcription factor complex;1.1718328048909e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.46422741661015e-07!GO:0030120;vesicle coat;1.49476011123691e-07!GO:0030662;coated vesicle membrane;1.49476011123691e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.78093421263325e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.78093421263325e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.81371820990045e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.81371820990045e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.81371820990045e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.08807472210977e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.08807472210977e-07!GO:0016568;chromatin modification;2.38244920485294e-07!GO:0045259;proton-transporting ATP synthase complex;2.63380418726829e-07!GO:0006752;group transfer coenzyme metabolic process;2.73824196802617e-07!GO:0006091;generation of precursor metabolites and energy;3.68761843010567e-07!GO:0016740;transferase activity;3.83126512018511e-07!GO:0005762;mitochondrial large ribosomal subunit;4.09163668561676e-07!GO:0000315;organellar large ribosomal subunit;4.09163668561676e-07!GO:0006793;phosphorus metabolic process;4.56127959096302e-07!GO:0006796;phosphate metabolic process;4.56127959096302e-07!GO:0005793;ER-Golgi intermediate compartment;4.91912565182047e-07!GO:0043038;amino acid activation;4.94224439144054e-07!GO:0006418;tRNA aminoacylation for protein translation;4.94224439144054e-07!GO:0043039;tRNA aminoacylation;4.94224439144054e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.09230504141883e-07!GO:0016881;acid-amino acid ligase activity;5.1351356177229e-07!GO:0016779;nucleotidyltransferase activity;5.24547348112619e-07!GO:0009117;nucleotide metabolic process;5.37402462444988e-07!GO:0043566;structure-specific DNA binding;5.7348797169385e-07!GO:0009109;coenzyme catabolic process;7.04364753585199e-07!GO:0051028;mRNA transport;7.46062121314931e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.01316538166132e-06!GO:0051427;hormone receptor binding;1.47501258060986e-06!GO:0048523;negative regulation of cellular process;1.8338114377861e-06!GO:0051187;cofactor catabolic process;2.04124740603996e-06!GO:0031324;negative regulation of cellular metabolic process;2.10723859504759e-06!GO:0016563;transcription activator activity;2.22740673858254e-06!GO:0032446;protein modification by small protein conjugation;2.40803453740799e-06!GO:0016564;transcription repressor activity;2.48003830707166e-06!GO:0003697;single-stranded DNA binding;2.58905977024965e-06!GO:0016567;protein ubiquitination;2.93206570102339e-06!GO:0008654;phospholipid biosynthetic process;3.07249988637067e-06!GO:0035257;nuclear hormone receptor binding;3.37832293905136e-06!GO:0031497;chromatin assembly;3.50723505860396e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.73130923072224e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.89702929508864e-06!GO:0004298;threonine endopeptidase activity;3.97827754346594e-06!GO:0051329;interphase of mitotic cell cycle;4.03214131581657e-06!GO:0006334;nucleosome assembly;4.15132710523346e-06!GO:0015630;microtubule cytoskeleton;4.15850203550319e-06!GO:0045786;negative regulation of progression through cell cycle;4.34698902944533e-06!GO:0005773;vacuole;4.40499390954959e-06!GO:0000151;ubiquitin ligase complex;4.72319607043253e-06!GO:0005770;late endosome;4.90980627544111e-06!GO:0000245;spliceosome assembly;5.38984225206744e-06!GO:0005819;spindle;5.54886316198076e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.75751368575485e-06!GO:0000314;organellar small ribosomal subunit;1.0488568711131e-05!GO:0005763;mitochondrial small ribosomal subunit;1.0488568711131e-05!GO:0031988;membrane-bound vesicle;1.07313175487664e-05!GO:0003713;transcription coactivator activity;1.17426939962577e-05!GO:0005798;Golgi-associated vesicle;1.18298933926641e-05!GO:0000775;chromosome, pericentric region;1.22124095949083e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.28011349692789e-05!GO:0042981;regulation of apoptosis;1.28562280826609e-05!GO:0043067;regulation of programmed cell death;1.40617423123782e-05!GO:0051246;regulation of protein metabolic process;1.46942498763617e-05!GO:0048519;negative regulation of biological process;1.50977805538336e-05!GO:0016310;phosphorylation;1.60297184702925e-05!GO:0003899;DNA-directed RNA polymerase activity;1.93229852341374e-05!GO:0043069;negative regulation of programmed cell death;2.09767227373779e-05!GO:0051170;nuclear import;2.20270606860378e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.29218244434815e-05!GO:0051325;interphase;2.35574755574855e-05!GO:0005813;centrosome;2.56502713212887e-05!GO:0044431;Golgi apparatus part;2.56502713212887e-05!GO:0000323;lytic vacuole;2.60062513574479e-05!GO:0005764;lysosome;2.60062513574479e-05!GO:0003924;GTPase activity;2.63475477051956e-05!GO:0005815;microtubule organizing center;2.86331158726864e-05!GO:0006261;DNA-dependent DNA replication;3.07847153564136e-05!GO:0006606;protein import into nucleus;3.08106597134604e-05!GO:0043066;negative regulation of apoptosis;3.25816893952922e-05!GO:0007051;spindle organization and biogenesis;3.6839089575731e-05!GO:0006916;anti-apoptosis;3.78038430858443e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.662944994792e-05!GO:0009892;negative regulation of metabolic process;4.83374995975427e-05!GO:0006613;cotranslational protein targeting to membrane;5.36003027738113e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.93110437694385e-05!GO:0005769;early endosome;6.88340190519083e-05!GO:0048471;perinuclear region of cytoplasm;7.35277536303036e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.91002651892106e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.06175919823355e-05!GO:0015399;primary active transmembrane transporter activity;8.06175919823355e-05!GO:0031982;vesicle;9.50602512435528e-05!GO:0016481;negative regulation of transcription;9.96624802910808e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.98631013620553e-05!GO:0045454;cell redox homeostasis;0.000112763324313998!GO:0030118;clathrin coat;0.000120816831851365!GO:0016853;isomerase activity;0.000122347214725244!GO:0046489;phosphoinositide biosynthetic process;0.000123626031813071!GO:0046474;glycerophospholipid biosynthetic process;0.000134554802742267!GO:0050662;coenzyme binding;0.000147851267840861!GO:0051168;nuclear export;0.000157686423307328!GO:0044440;endosomal part;0.000158774534181718!GO:0010008;endosome membrane;0.000158774534181718!GO:0031410;cytoplasmic vesicle;0.000160145032013112!GO:0003690;double-stranded DNA binding;0.00017115137895295!GO:0019867;outer membrane;0.000178144096255608!GO:0003724;RNA helicase activity;0.000180580566756957!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000198564137233818!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000215119758601854!GO:0006402;mRNA catabolic process;0.000255252853833031!GO:0042802;identical protein binding;0.000255252853833031!GO:0031968;organelle outer membrane;0.000257994644821629!GO:0048522;positive regulation of cellular process;0.000273305767740892!GO:0008033;tRNA processing;0.000274819078635273!GO:0005525;GTP binding;0.000295474772445608!GO:0030131;clathrin adaptor complex;0.000324667937281044!GO:0030119;AP-type membrane coat adaptor complex;0.00033308010357363!GO:0005741;mitochondrial outer membrane;0.000337029339945519!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000338059943210554!GO:0005788;endoplasmic reticulum lumen;0.000354842237129181!GO:0046983;protein dimerization activity;0.000361519051094098!GO:0030216;keratinocyte differentiation;0.000372736461543518!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000373345809014294!GO:0006352;transcription initiation;0.000384436437138117!GO:0000786;nucleosome;0.000395330169146617!GO:0015980;energy derivation by oxidation of organic compounds;0.000407261119163262!GO:0003714;transcription corepressor activity;0.000413127264185808!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000413839527749966!GO:0045941;positive regulation of transcription;0.000416274565448257!GO:0000139;Golgi membrane;0.000431682856064805!GO:0006302;double-strand break repair;0.000453166558249156!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000462649470646878!GO:0043021;ribonucleoprotein binding;0.000485638263733468!GO:0048037;cofactor binding;0.000487952332431504!GO:0030132;clathrin coat of coated pit;0.000513009226765542!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000529375652563206!GO:0045893;positive regulation of transcription, DNA-dependent;0.000530282651064054!GO:0006612;protein targeting to membrane;0.000533294183109797!GO:0003729;mRNA binding;0.000537620029825155!GO:0015992;proton transport;0.000540017584025709!GO:0006818;hydrogen transport;0.000557429407782689!GO:0004576;oligosaccharyl transferase activity;0.000557429407782689!GO:0000075;cell cycle checkpoint;0.000574637775792302!GO:0003682;chromatin binding;0.00057587998024768!GO:0016859;cis-trans isomerase activity;0.000588862626459746!GO:0008250;oligosaccharyl transferase complex;0.000594129674473433!GO:0006650;glycerophospholipid metabolic process;0.000600895290175155!GO:0005657;replication fork;0.000604033755667998!GO:0006082;organic acid metabolic process;0.000606799994915396!GO:0006506;GPI anchor biosynthetic process;0.000619506632911232!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00062728855607035!GO:0006505;GPI anchor metabolic process;0.000680126347171609!GO:0009165;nucleotide biosynthetic process;0.000704605888507697!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00074368929947082!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00074368929947082!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00074368929947082!GO:0019752;carboxylic acid metabolic process;0.000766376843404356!GO:0033116;ER-Golgi intermediate compartment membrane;0.000788384929141456!GO:0043492;ATPase activity, coupled to movement of substances;0.000792068716923237!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000804300118829203!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000804300118829203!GO:0030384;phosphoinositide metabolic process;0.000806356087107785!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000806976667019302!GO:0022890;inorganic cation transmembrane transporter activity;0.000856800036963302!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000870606357969324!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000876759184314391!GO:0050794;regulation of cellular process;0.000880475750521662!GO:0008094;DNA-dependent ATPase activity;0.000888173773700886!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000902984305669666!GO:0051287;NAD binding;0.000908274615581878!GO:0043681;protein import into mitochondrion;0.000908274615581878!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000908274615581878!GO:0007398;ectoderm development;0.000930301638652059!GO:0007040;lysosome organization and biogenesis;0.000962571623123933!GO:0051920;peroxiredoxin activity;0.00104176084113662!GO:0030663;COPI coated vesicle membrane;0.00104256941755153!GO:0030126;COPI vesicle coat;0.00104256941755153!GO:0006118;electron transport;0.00106266331818447!GO:0006401;RNA catabolic process;0.00109064611374117!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00112440329155127!GO:0007006;mitochondrial membrane organization and biogenesis;0.00112502625295891!GO:0045892;negative regulation of transcription, DNA-dependent;0.00112502625295891!GO:0019843;rRNA binding;0.00121536361528455!GO:0006414;translational elongation;0.00123560572910858!GO:0008610;lipid biosynthetic process;0.00147124654456977!GO:0006839;mitochondrial transport;0.00148197796784482!GO:0006626;protein targeting to mitochondrion;0.00148500424810358!GO:0005048;signal sequence binding;0.00156333888728858!GO:0003702;RNA polymerase II transcription factor activity;0.00158034913779625!GO:0005684;U2-dependent spliceosome;0.00161456778714111!GO:0000082;G1/S transition of mitotic cell cycle;0.00166619173889515!GO:0065009;regulation of a molecular function;0.00167931331897389!GO:0046467;membrane lipid biosynthetic process;0.00177036674274227!GO:0005885;Arp2/3 protein complex;0.00177137531872202!GO:0030521;androgen receptor signaling pathway;0.00178338815345068!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00180443495809583!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0018453278043661!GO:0007033;vacuole organization and biogenesis;0.0018784049279818!GO:0008186;RNA-dependent ATPase activity;0.0018977647202405!GO:0051252;regulation of RNA metabolic process;0.00196318860321992!GO:0008544;epidermis development;0.00202455301207603!GO:0032561;guanyl ribonucleotide binding;0.00202455301207603!GO:0019001;guanyl nucleotide binding;0.00202455301207603!GO:0006497;protein amino acid lipidation;0.00203980562107555!GO:0030867;rough endoplasmic reticulum membrane;0.00205781694528456!GO:0043488;regulation of mRNA stability;0.00224578391312135!GO:0043487;regulation of RNA stability;0.00224578391312135!GO:0030137;COPI-coated vesicle;0.00233769399768572!GO:0046966;thyroid hormone receptor binding;0.00234289513342248!GO:0007264;small GTPase mediated signal transduction;0.0023842210340627!GO:0051789;response to protein stimulus;0.00246062654059041!GO:0006986;response to unfolded protein;0.00246062654059041!GO:0000776;kinetochore;0.00263900490806618!GO:0016044;membrane organization and biogenesis;0.00278098806973092!GO:0030176;integral to endoplasmic reticulum membrane;0.00278098806973092!GO:0018196;peptidyl-asparagine modification;0.00304500778039425!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00304500778039425!GO:0005905;coated pit;0.00319985821239833!GO:0016251;general RNA polymerase II transcription factor activity;0.0033043265658874!GO:0046483;heterocycle metabolic process;0.00330548658742424!GO:0007088;regulation of mitosis;0.0034169467194369!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00349515398124388!GO:0015002;heme-copper terminal oxidase activity;0.00349515398124388!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00349515398124388!GO:0004129;cytochrome-c oxidase activity;0.00349515398124388!GO:0006733;oxidoreduction coenzyme metabolic process;0.00353332172825894!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00381472747745183!GO:0001533;cornified envelope;0.00385229320439358!GO:0006383;transcription from RNA polymerase III promoter;0.003969644675402!GO:0044452;nucleolar part;0.0039709129676025!GO:0035258;steroid hormone receptor binding;0.00401774904415244!GO:0007052;mitotic spindle organization and biogenesis;0.00416028433085099!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00428350098632338!GO:0030658;transport vesicle membrane;0.00459628161902493!GO:0003678;DNA helicase activity;0.00469364398075094!GO:0005637;nuclear inner membrane;0.00476886539807382!GO:0004004;ATP-dependent RNA helicase activity;0.00486983318207819!GO:0031072;heat shock protein binding;0.00507590599918166!GO:0030659;cytoplasmic vesicle membrane;0.00508596519976263!GO:0051098;regulation of binding;0.00541815179538498!GO:0048500;signal recognition particle;0.00549076584574746!GO:0051052;regulation of DNA metabolic process;0.00560268223708439!GO:0016126;sterol biosynthetic process;0.00565211793127424!GO:0000059;protein import into nucleus, docking;0.0058496020697706!GO:0016197;endosome transport;0.00598298124591889!GO:0006405;RNA export from nucleus;0.00625352314728527!GO:0006891;intra-Golgi vesicle-mediated transport;0.00632168700720238!GO:0015631;tubulin binding;0.00637545818711852!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00657381815316419!GO:0032508;DNA duplex unwinding;0.0066612892614414!GO:0032392;DNA geometric change;0.0066612892614414!GO:0051087;chaperone binding;0.00674382706778823!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00686939645656046!GO:0005777;peroxisome;0.00686939645656046!GO:0042579;microbody;0.00686939645656046!GO:0006779;porphyrin biosynthetic process;0.00686939645656046!GO:0033014;tetrapyrrole biosynthetic process;0.00686939645656046!GO:0030125;clathrin vesicle coat;0.00715746781770636!GO:0030665;clathrin coated vesicle membrane;0.00715746781770636!GO:0030880;RNA polymerase complex;0.00722714976722106!GO:0031252;leading edge;0.0073688829316917!GO:0042158;lipoprotein biosynthetic process;0.00739672247693592!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00744705114495517!GO:0006611;protein export from nucleus;0.00751249111659892!GO:0043022;ribosome binding;0.00752375878365634!GO:0005869;dynactin complex;0.00752451288595925!GO:0006644;phospholipid metabolic process;0.00766591754909116!GO:0030133;transport vesicle;0.00767707090044163!GO:0008601;protein phosphatase type 2A regulator activity;0.007934592718017!GO:0044255;cellular lipid metabolic process;0.0080140918921174!GO:0048487;beta-tubulin binding;0.00835781532221217!GO:0003711;transcription elongation regulator activity;0.00838270195666122!GO:0004518;nuclease activity;0.00911877606532401!GO:0000159;protein phosphatase type 2A complex;0.00926584377498184!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00926584377498184!GO:0004527;exonuclease activity;0.00939155054369164!GO:0006310;DNA recombination;0.00941514165074303!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00974744010987881!GO:0006740;NADPH regeneration;0.00993547989071226!GO:0006098;pentose-phosphate shunt;0.00993547989071226!GO:0006767;water-soluble vitamin metabolic process;0.0100075109146288!GO:0006778;porphyrin metabolic process;0.01007429935519!GO:0033013;tetrapyrrole metabolic process;0.01007429935519!GO:0006672;ceramide metabolic process;0.0101941410422412!GO:0008312;7S RNA binding;0.0103644899657111!GO:0008180;signalosome;0.0105438169558531!GO:0016311;dephosphorylation;0.0105945509199216!GO:0003684;damaged DNA binding;0.0107321579394484!GO:0008287;protein serine/threonine phosphatase complex;0.0111648428995882!GO:0030660;Golgi-associated vesicle membrane;0.0115092771538536!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0115195439741612!GO:0044438;microbody part;0.0115195439741612!GO:0044439;peroxisomal part;0.0115195439741612!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0117471750530804!GO:0010257;NADH dehydrogenase complex assembly;0.0117471750530804!GO:0033108;mitochondrial respiratory chain complex assembly;0.0117471750530804!GO:0030518;steroid hormone receptor signaling pathway;0.0120797695539254!GO:0006268;DNA unwinding during replication;0.0127877488539266!GO:0016272;prefoldin complex;0.0128653705167047!GO:0031124;mRNA 3'-end processing;0.0131056948486324!GO:0005856;cytoskeleton;0.0134830525510885!GO:0006979;response to oxidative stress;0.0135281740343199!GO:0006643;membrane lipid metabolic process;0.01376910733922!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0141046543529905!GO:0005774;vacuolar membrane;0.0141079090192862!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0141542646168126!GO:0000428;DNA-directed RNA polymerase complex;0.0141542646168126!GO:0000030;mannosyltransferase activity;0.0143507872001157!GO:0005876;spindle microtubule;0.0144219418604528!GO:0005832;chaperonin-containing T-complex;0.0144774325369353!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0147352485497218!GO:0045047;protein targeting to ER;0.0147352485497218!GO:0006520;amino acid metabolic process;0.0150089012811816!GO:0004674;protein serine/threonine kinase activity;0.0151839524039443!GO:0007059;chromosome segregation;0.0158771288007933!GO:0048518;positive regulation of biological process;0.0158771288007933!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0163102836569769!GO:0044433;cytoplasmic vesicle part;0.0167541588713695!GO:0016791;phosphoric monoester hydrolase activity;0.0168827644733535!GO:0030057;desmosome;0.0171415764793397!GO:0008652;amino acid biosynthetic process;0.0172881923950279!GO:0051540;metal cluster binding;0.0173445017791911!GO:0051536;iron-sulfur cluster binding;0.0173445017791911!GO:0046822;regulation of nucleocytoplasmic transport;0.0178558305786066!GO:0012506;vesicle membrane;0.0180278579510244!GO:0004300;enoyl-CoA hydratase activity;0.0182410580744234!GO:0031902;late endosome membrane;0.0183113253939995!GO:0006368;RNA elongation from RNA polymerase II promoter;0.018624394369832!GO:0007034;vacuolar transport;0.0186370076498915!GO:0005791;rough endoplasmic reticulum;0.0189342062660806!GO:0006284;base-excision repair;0.0191826822807757!GO:0031625;ubiquitin protein ligase binding;0.0193249954891365!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0193249954891365!GO:0008139;nuclear localization sequence binding;0.019368602511403!GO:0008022;protein C-terminus binding;0.0194468425407729!GO:0007093;mitotic cell cycle checkpoint;0.0195135247207248!GO:0007041;lysosomal transport;0.0195471046727669!GO:0030145;manganese ion binding;0.0195665783648374!GO:0006695;cholesterol biosynthetic process;0.0197661126623816!GO:0031903;microbody membrane;0.0198379981177107!GO:0005778;peroxisomal membrane;0.0198379981177107!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0199406597192112!GO:0009303;rRNA transcription;0.0202279970839201!GO:0004177;aminopeptidase activity;0.0202588414938074!GO:0051539;4 iron, 4 sulfur cluster binding;0.0203782218712835!GO:0016741;transferase activity, transferring one-carbon groups;0.020498737383248!GO:0008168;methyltransferase activity;0.0205949169964217!GO:0007017;microtubule-based process;0.0208586860695114!GO:0008632;apoptotic program;0.0208843126957151!GO:0000178;exosome (RNase complex);0.0209106117805625!GO:0030032;lamellipodium biogenesis;0.0209267483555192!GO:0046519;sphingoid metabolic process;0.0209267483555192!GO:0019899;enzyme binding;0.0209430296936053!GO:0016363;nuclear matrix;0.0209741324265654!GO:0032507;maintenance of cellular protein localization;0.0210488410987338!GO:0006338;chromatin remodeling;0.0210600234277804!GO:0043414;biopolymer methylation;0.0210645908957465!GO:0051452;cellular pH reduction;0.021345035171302!GO:0051453;regulation of cellular pH;0.021345035171302!GO:0045851;pH reduction;0.021345035171302!GO:0006730;one-carbon compound metabolic process;0.0218667529279453!GO:0030128;clathrin coat of endocytic vesicle;0.022216297111394!GO:0030669;clathrin-coated endocytic vesicle membrane;0.022216297111394!GO:0030122;AP-2 adaptor complex;0.022216297111394!GO:0003746;translation elongation factor activity;0.0225185713404448!GO:0030031;cell projection biogenesis;0.0225239804868181!GO:0003756;protein disulfide isomerase activity;0.0227045518811283!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0227045518811283!GO:0007010;cytoskeleton organization and biogenesis;0.0228466076004244!GO:0000049;tRNA binding;0.0228833761131704!GO:0031529;ruffle organization and biogenesis;0.0230173140011972!GO:0045334;clathrin-coated endocytic vesicle;0.0235862136915478!GO:0017166;vinculin binding;0.0236537673318133!GO:0016584;nucleosome positioning;0.0236537673318133!GO:0050681;androgen receptor binding;0.0238128556568851!GO:0030134;ER to Golgi transport vesicle;0.0239128670820997!GO:0006783;heme biosynthetic process;0.0240018347539989!GO:0009081;branched chain family amino acid metabolic process;0.0240018347539989!GO:0000339;RNA cap binding;0.0246944676116931!GO:0016408;C-acyltransferase activity;0.0248263511185347!GO:0005669;transcription factor TFIID complex;0.0255264947819883!GO:0000096;sulfur amino acid metabolic process;0.025788527812659!GO:0016783;sulfurtransferase activity;0.0261618771118004!GO:0043284;biopolymer biosynthetic process;0.0263295514998478!GO:0043550;regulation of lipid kinase activity;0.0271402608657556!GO:0006289;nucleotide-excision repair;0.0271556639480609!GO:0006635;fatty acid beta-oxidation;0.0277981370911631!GO:0044437;vacuolar part;0.0280145305838729!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0288754240603774!GO:0043624;cellular protein complex disassembly;0.0288968534857918!GO:0006378;mRNA polyadenylation;0.029124533082697!GO:0050790;regulation of catalytic activity;0.0298308951190627!GO:0006007;glucose catabolic process;0.0299657992294415!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0300869145482268!GO:0007243;protein kinase cascade;0.030324188714859!GO:0005874;microtubule;0.0305519345496424!GO:0006518;peptide metabolic process;0.0306218591218354!GO:0009967;positive regulation of signal transduction;0.0316435144305421!GO:0044262;cellular carbohydrate metabolic process;0.0320191657567903!GO:0004721;phosphoprotein phosphatase activity;0.0322804495553824!GO:0042168;heme metabolic process;0.032918915127673!GO:0006354;RNA elongation;0.0331925418670315!GO:0004448;isocitrate dehydrogenase activity;0.0334430070313843!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0335373800948848!GO:0032259;methylation;0.0340111009621578!GO:0008538;proteasome activator activity;0.0340111009621578!GO:0043403;skeletal muscle regeneration;0.0340832013613954!GO:0006516;glycoprotein catabolic process;0.0344861540828885!GO:0000792;heterochromatin;0.0365561747309633!GO:0000228;nuclear chromosome;0.0365698547178626!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0376724740252613!GO:0051651;maintenance of cellular localization;0.0379861685902705!GO:0000086;G2/M transition of mitotic cell cycle;0.0384183431816614!GO:0009451;RNA modification;0.0386065127822071!GO:0016407;acetyltransferase activity;0.0386065127822071!GO:0006892;post-Golgi vesicle-mediated transport;0.0387302126358967!GO:0008426;protein kinase C inhibitor activity;0.0388575524611855!GO:0006739;NADP metabolic process;0.0392706720501031!GO:0030911;TPR domain binding;0.0396652809289562!GO:0000287;magnesium ion binding;0.0396652809289562!GO:0015036;disulfide oxidoreductase activity;0.0401315421437776!GO:0009083;branched chain family amino acid catabolic process;0.0404737040526116!GO:0016860;intramolecular oxidoreductase activity;0.0409428178903769!GO:0022411;cellular component disassembly;0.0409428178903769!GO:0019362;pyridine nucleotide metabolic process;0.0410793815968505!GO:0006275;regulation of DNA replication;0.0421841894832371!GO:0004563;beta-N-acetylhexosaminidase activity;0.0422787941909842!GO:0030508;thiol-disulfide exchange intermediate activity;0.0425252884746049!GO:0030127;COPII vesicle coat;0.0425252884746049!GO:0012507;ER to Golgi transport vesicle membrane;0.0425252884746049!GO:0009112;nucleobase metabolic process;0.043025895587981!GO:0043154;negative regulation of caspase activity;0.0433408378363931!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0434818986086909!GO:0004427;inorganic diphosphatase activity;0.0443088423701391!GO:0006376;mRNA splice site selection;0.0447481114208376!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0447481114208376!GO:0032984;macromolecular complex disassembly;0.0448486091757437!GO:0006470;protein amino acid dephosphorylation;0.0450713054627317!GO:0006360;transcription from RNA polymerase I promoter;0.0450757232560493!GO:0000118;histone deacetylase complex;0.045125154175539!GO:0005784;translocon complex;0.0456452292773098!GO:0005765;lysosomal membrane;0.0456452292773098!GO:0030140;trans-Golgi network transport vesicle;0.0456953778976693!GO:0006595;polyamine metabolic process;0.0456953778976693!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0457661441513965!GO:0019206;nucleoside kinase activity;0.0460003591958693!GO:0031371;ubiquitin conjugating enzyme complex;0.0460492791322302!GO:0004722;protein serine/threonine phosphatase activity;0.0464821773800626!GO:0004532;exoribonuclease activity;0.0465189442868652!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0465189442868652!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0467107352101085!GO:0050178;phenylpyruvate tautomerase activity;0.0478322559371043!GO:0003725;double-stranded RNA binding;0.0481829637678609!GO:0007050;cell cycle arrest;0.0489754823875243!GO:0007265;Ras protein signal transduction;0.0491818428994068 | |||
|sample_id=10791 | |sample_id=10791 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=FOXQ1:1.89720113161;NKX2-3_NKX2-5:1.59918391668;ZEB1:1.56876581904;TP53:1.53497383291;NANOG:1.45821919034;SNAI1..3:1.4186802554;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.32840567596;VSX1,2:1.25836165169;NKX2-1,4:1.19424830797;RBPJ:1.17719235;ARID5B:1.12480232938;ELK1,4_GABP{A,B1}:1.04658521925;NR6A1:0.964229946669;FOX{I1,J2}:0.947121575449;NR5A1,2:0.913073600094;ONECUT1,2:0.881883802563;TBX4,5:0.814052246629;FOXM1:0.810708069099;PAX2:0.793151974564;bHLH_family:0.736416595722;PBX1:0.71299478399;PAX1,9:0.662441677531;TEF:0.655465219524;NFY{A,B,C}:0.648334491976;PDX1:0.585580657583;YY1:0.583359759516;PAX4:0.580492377766;ADNP_IRX_SIX_ZHX:0.575948104137;FOX{F1,F2,J1}:0.575532443792;E2F1..5:0.571109255189;LHX3,4:0.569279645451;POU1F1:0.567421682614;T:0.549941938842;TOPORS:0.498784344097;PITX1..3:0.486394558989;ALX1:0.485158681907;XCPE1{core}:0.448764527617;HOX{A6,A7,B6,B7}:0.433453243151;FOXN1:0.433191897188;NKX3-2:0.429019004673;FOS_FOS{B,L1}_JUN{B,D}:0.419861091179;ESRRA:0.407349353768;TBP:0.401581411897;CDC5L:0.391420800697;IKZF1:0.379952636455;NRF1:0.374801451893;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.346201855338;SP1:0.325204990796;ZNF384:0.324033152586;RFX2..5_RFXANK_RFXAP:0.312476701775;MYOD1:0.309007905834;NFIL3:0.305094613823;ATF4:0.296649018373;CRX:0.296265760564;FOXP1:0.247099361338;HAND1,2:0.231982492938;PPARG:0.19417514674;HOX{A4,D4}:0.191572749586;SREBF1,2:0.186980835087;PAX8:0.177796836666;TFAP2{A,C}:0.175735642576;HSF1,2:0.16269207046;OCT4_SOX2{dimer}:0.144901583969;SOX17:0.139014979827;NFE2:0.136141321282;HOX{A5,B5}:0.125619919952;ZNF143:0.119945793057;LMO2:0.111482605012;BPTF:0.103333648531;ZNF148:0.101700813667;TFAP2B:0.0963368482788;PRRX1,2:0.088481381674;NKX6-1,2:0.0871314172269;AIRE:0.0865282343371;POU6F1:0.0844276193426;FOXO1,3,4:0.0759716864816;RORA:0.0722540458857;BREu{core}:0.0601818245502;ATF5_CREB3:0.0518584850347;HIC1:0.0494597459399;POU2F1..3:0.0229042825678;REST:0.0220996534465;FOX{D1,D2}:0.0172869968218;CEBPA,B_DDIT3:0.0169119710677;TFDP1:-9.60593125087e-05;TEAD1:-0.00528393843228;MED-1{core}:-0.0462970060183;NKX3-1:-0.0615728590454;BACH2:-0.0909288551432;EP300:-0.0943111043376;TLX1..3_NFIC{dimer}:-0.0945597164347;MYBL2:-0.106649447956;KLF4:-0.113511616307;IRF7:-0.11894462907;ZBTB16:-0.120946886575;FOXP3:-0.126684254517;FOXL1:-0.137904913398;ZNF238:-0.151784199859;FOSL2:-0.164392864504;ZBTB6:-0.166070454102;SOX2:-0.17371805904;CREB1:-0.179202208814;HNF1A:-0.182087091506;ZIC1..3:-0.189912525558;GFI1:-0.195493980462;NFE2L2:-0.202244733039;RXR{A,B,G}:-0.217860386821;SOX{8,9,10}:-0.221864716374;EN1,2:-0.233281632622;ALX4:-0.238034892272;ZFP161:-0.247021986481;ELF1,2,4:-0.247728784174;HNF4A_NR2F1,2:-0.24913698572;MTE{core}:-0.252297096316;POU5F1:-0.262087544885;HLF:-0.262829983452;MTF1:-0.272763271465;UFEwm:-0.27974006773;NKX2-2,8:-0.281020000962;GTF2A1,2:-0.298688635447;GLI1..3:-0.309870105327;ESR1:-0.315288877164;CDX1,2,4:-0.332538797642;RFX1:-0.334269565761;AR:-0.343365219277;JUN:-0.347129310625;FOXD3:-0.348361187977;MEF2{A,B,C,D}:-0.356437999758;IKZF2:-0.367508241132;STAT5{A,B}:-0.371700370203;AHR_ARNT_ARNT2:-0.373477126654;NR1H4:-0.378741595085;PAX6:-0.378876990594;TFCP2:-0.388554061605;GFI1B:-0.395931344349;EGR1..3:-0.398094284947;HOXA9_MEIS1:-0.403764152306;NFKB1_REL_RELA:-0.408358275062;ATF2:-0.413028987146;MYB:-0.430393091396;TAL1_TCF{3,4,12}:-0.449334163762;GATA6:-0.476014232663;ZNF423:-0.4830614341;HMX1:-0.492599243014;PAX5:-0.536249954743;NANOG{mouse}:-0.536480938048;GTF2I:-0.539689706138;EVI1:-0.549590523924;MAZ:-0.555426399928;SPIB:-0.558190241203;ETS1,2:-0.577880835316;NFIX:-0.632054333445;SPI1:-0.658456083078;MYFfamily:-0.663266912249;EBF1:-0.681119203571;GZF1:-0.704166755996;CUX2:-0.714139973609;DMAP1_NCOR{1,2}_SMARC:-0.721037362635;HIF1A:-0.731457530842;TGIF1:-0.749557396595;LEF1_TCF7_TCF7L1,2:-0.75045360392;RUNX1..3:-0.75732107625;FOXA2:-0.780807738799;HBP1_HMGB_SSRP1_UBTF:-0.782043794286;GATA4:-0.783915872471;PRDM1:-0.797351032884;POU3F1..4:-0.850030200564;SOX5:-0.856556564479;IRF1,2:-0.857981321028;PATZ1:-0.923193409263;SMAD1..7,9:-0.949232864129;HMGA1,2:-0.962717073859;TLX2:-0.977465113439;XBP1:-0.982360361096;PAX3,7:-1.00295224009;NHLH1,2:-1.04558962401;RREB1:-1.07220243938;MAFB:-1.11950522027;SPZ1:-1.12864202718;NR3C1:-1.15023205777;ATF6:-1.15029753806;NFE2L1:-1.17276585261;STAT2,4,6:-1.18197890679;HES1:-1.29620232838;RXRA_VDR{dimer}:-1.36894858241;GCM1,2:-1.37666572149;STAT1,3:-1.5173854813;SRF:-1.53277468105;MZF1:-1.55467358147;TFAP4:-1.58308152137;NFATC1..3:-1.60050567086;DBP:-1.61137298178 | |top_motifs=FOXQ1:1.89720113161;NKX2-3_NKX2-5:1.59918391668;ZEB1:1.56876581904;TP53:1.53497383291;NANOG:1.45821919034;SNAI1..3:1.4186802554;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.32840567596;VSX1,2:1.25836165169;NKX2-1,4:1.19424830797;RBPJ:1.17719235;ARID5B:1.12480232938;ELK1,4_GABP{A,B1}:1.04658521925;NR6A1:0.964229946669;FOX{I1,J2}:0.947121575449;NR5A1,2:0.913073600094;ONECUT1,2:0.881883802563;TBX4,5:0.814052246629;FOXM1:0.810708069099;PAX2:0.793151974564;bHLH_family:0.736416595722;PBX1:0.71299478399;PAX1,9:0.662441677531;TEF:0.655465219524;NFY{A,B,C}:0.648334491976;PDX1:0.585580657583;YY1:0.583359759516;PAX4:0.580492377766;ADNP_IRX_SIX_ZHX:0.575948104137;FOX{F1,F2,J1}:0.575532443792;E2F1..5:0.571109255189;LHX3,4:0.569279645451;POU1F1:0.567421682614;T:0.549941938842;TOPORS:0.498784344097;PITX1..3:0.486394558989;ALX1:0.485158681907;XCPE1{core}:0.448764527617;HOX{A6,A7,B6,B7}:0.433453243151;FOXN1:0.433191897188;NKX3-2:0.429019004673;FOS_FOS{B,L1}_JUN{B,D}:0.419861091179;ESRRA:0.407349353768;TBP:0.401581411897;CDC5L:0.391420800697;IKZF1:0.379952636455;NRF1:0.374801451893;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.346201855338;SP1:0.325204990796;ZNF384:0.324033152586;RFX2..5_RFXANK_RFXAP:0.312476701775;MYOD1:0.309007905834;NFIL3:0.305094613823;ATF4:0.296649018373;CRX:0.296265760564;FOXP1:0.247099361338;HAND1,2:0.231982492938;PPARG:0.19417514674;HOX{A4,D4}:0.191572749586;SREBF1,2:0.186980835087;PAX8:0.177796836666;TFAP2{A,C}:0.175735642576;HSF1,2:0.16269207046;OCT4_SOX2{dimer}:0.144901583969;SOX17:0.139014979827;NFE2:0.136141321282;HOX{A5,B5}:0.125619919952;ZNF143:0.119945793057;LMO2:0.111482605012;BPTF:0.103333648531;ZNF148:0.101700813667;TFAP2B:0.0963368482788;PRRX1,2:0.088481381674;NKX6-1,2:0.0871314172269;AIRE:0.0865282343371;POU6F1:0.0844276193426;FOXO1,3,4:0.0759716864816;RORA:0.0722540458857;BREu{core}:0.0601818245502;ATF5_CREB3:0.0518584850347;HIC1:0.0494597459399;POU2F1..3:0.0229042825678;REST:0.0220996534465;FOX{D1,D2}:0.0172869968218;CEBPA,B_DDIT3:0.0169119710677;TFDP1:-9.60593125087e-05;TEAD1:-0.00528393843228;MED-1{core}:-0.0462970060183;NKX3-1:-0.0615728590454;BACH2:-0.0909288551432;EP300:-0.0943111043376;TLX1..3_NFIC{dimer}:-0.0945597164347;MYBL2:-0.106649447956;KLF4:-0.113511616307;IRF7:-0.11894462907;ZBTB16:-0.120946886575;FOXP3:-0.126684254517;FOXL1:-0.137904913398;ZNF238:-0.151784199859;FOSL2:-0.164392864504;ZBTB6:-0.166070454102;SOX2:-0.17371805904;CREB1:-0.179202208814;HNF1A:-0.182087091506;ZIC1..3:-0.189912525558;GFI1:-0.195493980462;NFE2L2:-0.202244733039;RXR{A,B,G}:-0.217860386821;SOX{8,9,10}:-0.221864716374;EN1,2:-0.233281632622;ALX4:-0.238034892272;ZFP161:-0.247021986481;ELF1,2,4:-0.247728784174;HNF4A_NR2F1,2:-0.24913698572;MTE{core}:-0.252297096316;POU5F1:-0.262087544885;HLF:-0.262829983452;MTF1:-0.272763271465;UFEwm:-0.27974006773;NKX2-2,8:-0.281020000962;GTF2A1,2:-0.298688635447;GLI1..3:-0.309870105327;ESR1:-0.315288877164;CDX1,2,4:-0.332538797642;RFX1:-0.334269565761;AR:-0.343365219277;JUN:-0.347129310625;FOXD3:-0.348361187977;MEF2{A,B,C,D}:-0.356437999758;IKZF2:-0.367508241132;STAT5{A,B}:-0.371700370203;AHR_ARNT_ARNT2:-0.373477126654;NR1H4:-0.378741595085;PAX6:-0.378876990594;TFCP2:-0.388554061605;GFI1B:-0.395931344349;EGR1..3:-0.398094284947;HOXA9_MEIS1:-0.403764152306;NFKB1_REL_RELA:-0.408358275062;ATF2:-0.413028987146;MYB:-0.430393091396;TAL1_TCF{3,4,12}:-0.449334163762;GATA6:-0.476014232663;ZNF423:-0.4830614341;HMX1:-0.492599243014;PAX5:-0.536249954743;NANOG{mouse}:-0.536480938048;GTF2I:-0.539689706138;EVI1:-0.549590523924;MAZ:-0.555426399928;SPIB:-0.558190241203;ETS1,2:-0.577880835316;NFIX:-0.632054333445;SPI1:-0.658456083078;MYFfamily:-0.663266912249;EBF1:-0.681119203571;GZF1:-0.704166755996;CUX2:-0.714139973609;DMAP1_NCOR{1,2}_SMARC:-0.721037362635;HIF1A:-0.731457530842;TGIF1:-0.749557396595;LEF1_TCF7_TCF7L1,2:-0.75045360392;RUNX1..3:-0.75732107625;FOXA2:-0.780807738799;HBP1_HMGB_SSRP1_UBTF:-0.782043794286;GATA4:-0.783915872471;PRDM1:-0.797351032884;POU3F1..4:-0.850030200564;SOX5:-0.856556564479;IRF1,2:-0.857981321028;PATZ1:-0.923193409263;SMAD1..7,9:-0.949232864129;HMGA1,2:-0.962717073859;TLX2:-0.977465113439;XBP1:-0.982360361096;PAX3,7:-1.00295224009;NHLH1,2:-1.04558962401;RREB1:-1.07220243938;MAFB:-1.11950522027;SPZ1:-1.12864202718;NR3C1:-1.15023205777;ATF6:-1.15029753806;NFE2L1:-1.17276585261;STAT2,4,6:-1.18197890679;HES1:-1.29620232838;RXRA_VDR{dimer}:-1.36894858241;GCM1,2:-1.37666572149;STAT1,3:-1.5173854813;SRF:-1.53277468105;MZF1:-1.55467358147;TFAP4:-1.58308152137;NFATC1..3:-1.60050567086;DBP:-1.61137298178 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10791-110H8;search_select_hide=table117:FF:10791-110H8 | |||
}} | }} | ||
Latest revision as of 15:05, 3 June 2020
| Name: | keratoacanthoma cell line:HKA-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11880 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11880
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11880
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.441 |
| 10 | 10 | 0.678 |
| 100 | 100 | 0.107 |
| 101 | 101 | 0.898 |
| 102 | 102 | 0.262 |
| 103 | 103 | 0.55 |
| 104 | 104 | 0.958 |
| 105 | 105 | 0.669 |
| 106 | 106 | 0.317 |
| 107 | 107 | 0.461 |
| 108 | 108 | 0.915 |
| 109 | 109 | 0.00826 |
| 11 | 11 | 0.51 |
| 110 | 110 | 0.764 |
| 111 | 111 | 0.436 |
| 112 | 112 | 0.622 |
| 113 | 113 | 0.291 |
| 114 | 114 | 0.774 |
| 115 | 115 | 0.514 |
| 116 | 116 | 0.385 |
| 117 | 117 | 0.585 |
| 118 | 118 | 0.331 |
| 119 | 119 | 0.143 |
| 12 | 12 | 0.661 |
| 120 | 120 | 0.293 |
| 121 | 121 | 0.468 |
| 122 | 122 | 0.118 |
| 123 | 123 | 0.025 |
| 124 | 124 | 0.0318 |
| 125 | 125 | 0.727 |
| 126 | 126 | 0.621 |
| 127 | 127 | 0.899 |
| 128 | 128 | 0.363 |
| 129 | 129 | 0.384 |
| 13 | 13 | 0.00934 |
| 130 | 130 | 0.764 |
| 131 | 131 | 0.0767 |
| 132 | 132 | 0.597 |
| 133 | 133 | 0.0259 |
| 134 | 134 | 0.262 |
| 135 | 135 | 0.0239 |
| 136 | 136 | 0.00495 |
| 137 | 137 | 0.0137 |
| 138 | 138 | 0.474 |
| 139 | 139 | 0.515 |
| 14 | 14 | 0.984 |
| 140 | 140 | 0.715 |
| 141 | 141 | 0.0552 |
| 142 | 142 | 0.208 |
| 143 | 143 | 0.106 |
| 144 | 144 | 0.48 |
| 145 | 145 | 0.383 |
| 146 | 146 | 0.0868 |
| 147 | 147 | 0.871 |
| 148 | 148 | 0.621 |
| 149 | 149 | 0.29 |
| 15 | 15 | 0.875 |
| 150 | 150 | 0.848 |
| 151 | 151 | 0.938 |
| 152 | 152 | 0.259 |
| 153 | 153 | 0.836 |
| 154 | 154 | 0.598 |
| 155 | 155 | 0.32 |
| 156 | 156 | 0.985 |
| 157 | 157 | 0.947 |
| 158 | 158 | 0.45 |
| 159 | 159 | 0.204 |
| 16 | 16 | 0.557 |
| 160 | 160 | 0.958 |
| 161 | 161 | 0.501 |
| 162 | 162 | 0.691 |
| 163 | 163 | 0.0748 |
| 164 | 164 | 0.218 |
| 165 | 165 | 0.82 |
| 166 | 166 | 0.0608 |
| 167 | 167 | 0.0666 |
| 168 | 168 | 0.265 |
| 169 | 169 | 0.948 |
| 17 | 17 | 0.244 |
| 18 | 18 | 0.195 |
| 19 | 19 | 0.00986 |
| 2 | 2 | 0.607 |
| 20 | 20 | 0.334 |
| 21 | 21 | 0.67 |
| 22 | 22 | 0.526 |
| 23 | 23 | 0.00735 |
| 24 | 24 | 0.189 |
| 25 | 25 | 0.976 |
| 26 | 26 | 0.0583 |
| 27 | 27 | 0.593 |
| 28 | 28 | 0.389 |
| 29 | 29 | 0.401 |
| 3 | 3 | 0.805 |
| 30 | 30 | 0.533 |
| 31 | 31 | 0.586 |
| 32 | 32 | 0.131 |
| 33 | 33 | 0.335 |
| 34 | 34 | 0.199 |
| 35 | 35 | 0.241 |
| 36 | 36 | 0.518 |
| 37 | 37 | 0.745 |
| 38 | 38 | 0.437 |
| 39 | 39 | 0.786 |
| 4 | 4 | 0.773 |
| 40 | 40 | 0.0208 |
| 41 | 41 | 0.143 |
| 42 | 42 | 0.746 |
| 43 | 43 | 0.49 |
| 44 | 44 | 0.0672 |
| 45 | 45 | 0.763 |
| 46 | 46 | 0.939 |
| 47 | 47 | 0.466 |
| 48 | 48 | 0.153 |
| 49 | 49 | 0.369 |
| 5 | 5 | 0.524 |
| 50 | 50 | 0.901 |
| 51 | 51 | 0.948 |
| 52 | 52 | 0.663 |
| 53 | 53 | 0.869 |
| 54 | 54 | 0.674 |
| 55 | 55 | 0.691 |
| 56 | 56 | 0.746 |
| 57 | 57 | 0.22 |
| 58 | 58 | 0.76 |
| 59 | 59 | 0.446 |
| 6 | 6 | 0.678 |
| 60 | 60 | 0.807 |
| 61 | 61 | 0.924 |
| 62 | 62 | 0.488 |
| 63 | 63 | 0.727 |
| 64 | 64 | 0.365 |
| 65 | 65 | 0.896 |
| 66 | 66 | 0.0769 |
| 67 | 67 | 0.753 |
| 68 | 68 | 0.751 |
| 69 | 69 | 0.139 |
| 7 | 7 | 0.48 |
| 70 | 70 | 0.579 |
| 71 | 71 | 0.396 |
| 72 | 72 | 0.672 |
| 73 | 73 | 0.0454 |
| 74 | 74 | 8.51995e-4 |
| 75 | 75 | 0.322 |
| 76 | 76 | 0.949 |
| 77 | 77 | 0.729 |
| 78 | 78 | 0.00457 |
| 79 | 79 | 0.404 |
| 8 | 8 | 0.288 |
| 80 | 80 | 0.313 |
| 81 | 81 | 0.249 |
| 82 | 82 | 0.839 |
| 83 | 83 | 0.276 |
| 84 | 84 | 0.432 |
| 85 | 85 | 0.39 |
| 86 | 86 | 0.142 |
| 87 | 87 | 0.00422 |
| 88 | 88 | 0.926 |
| 89 | 89 | 0.923 |
| 9 | 9 | 0.219 |
| 90 | 90 | 0.27 |
| 91 | 91 | 0.115 |
| 92 | 92 | 0.366 |
| 93 | 93 | 0.684 |
| 94 | 94 | 0.0889 |
| 95 | 95 | 0.0421 |
| 96 | 96 | 0.139 |
| 97 | 97 | 0.893 |
| 98 | 98 | 0.984 |
| 99 | 99 | 0.925 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11880
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3149 keratoacanthoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0000014 zone of skin
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3451 (skin carcinoma)
3151 (skin squamous cell carcinoma)
4159 (skin cancer)
0060122 (integumentary system cancer)
3149 (keratoacanthoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0002097 (skin of body)
0002199 (integument)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
