FF:10798-110I6: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	teratocarcinoma cell line:NCR-G1
Species:	Human (Homo sapiens)
Library ID:	CNhs11884
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	testis
dev stage	NA
sex	male
age	embryo
cell type	germ cell
cell line	NCR-G1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004827

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11884		CAGE		DRX008020		DRR008892

Accession ID Hg19

Library id		BAM		CTSS
CNhs11884		DRZ000317		DRZ001702

Accession ID Hg38

Library id		BAM		CTSS
CNhs11884		DRZ011667		DRZ013052

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.286
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.574
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0.834
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0239
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0255
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.2
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0303
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0552
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.582
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0543
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.026
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0525
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.615
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0518
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0518
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.14
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0131
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0518
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0518
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11884

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.0371e-5
MA0003.1	MA0003.1	0.0603
MA0004.1	MA0004.1	0.518
MA0006.1	MA0006.1	0.366
MA0007.1	MA0007.1	0.341
MA0009.1	MA0009.1	0.286
MA0014.1	MA0014.1	0.713
MA0017.1	MA0017.1	0.106
MA0018.2	MA0018.2	0.334
MA0019.1	MA0019.1	0.435
MA0024.1	MA0024.1	1.96866e-5
MA0025.1	MA0025.1	0.777
MA0027.1	MA0027.1	0.333
MA0028.1	MA0028.1	5.01327e-5
MA0029.1	MA0029.1	0.699
MA0030.1	MA0030.1	0.278
MA0031.1	MA0031.1	0.285
MA0035.2	MA0035.2	0.0373
MA0038.1	MA0038.1	2.49384e-4
MA0039.2	MA0039.2	0.209
MA0040.1	MA0040.1	0.669
MA0041.1	MA0041.1	0.265
MA0042.1	MA0042.1	0.637
MA0043.1	MA0043.1	0.977
MA0046.1	MA0046.1	0.219
MA0047.2	MA0047.2	0.0807
MA0048.1	MA0048.1	0.0293
MA0050.1	MA0050.1	7.16955e-11
MA0051.1	MA0051.1	2.23249e-8
MA0052.1	MA0052.1	0.313
MA0055.1	MA0055.1	0.0232
MA0057.1	MA0057.1	0.256
MA0058.1	MA0058.1	0.363
MA0059.1	MA0059.1	0.172
MA0060.1	MA0060.1	6.91175e-13
MA0061.1	MA0061.1	0.00224
MA0062.2	MA0062.2	3.77901e-4
MA0065.2	MA0065.2	0.756
MA0066.1	MA0066.1	0.472
MA0067.1	MA0067.1	0.109
MA0068.1	MA0068.1	3.93039e-7
MA0069.1	MA0069.1	0.8
MA0070.1	MA0070.1	0.0378
MA0071.1	MA0071.1	0.633
MA0072.1	MA0072.1	0.464
MA0073.1	MA0073.1	0.731
MA0074.1	MA0074.1	0.453
MA0076.1	MA0076.1	4.57797e-6
MA0077.1	MA0077.1	0.79
MA0078.1	MA0078.1	0.148
MA0079.2	MA0079.2	0.816
MA0080.2	MA0080.2	1.50455e-11
MA0081.1	MA0081.1	0.132
MA0083.1	MA0083.1	0.487
MA0084.1	MA0084.1	0.38
MA0087.1	MA0087.1	0.638
MA0088.1	MA0088.1	0.092
MA0090.1	MA0090.1	0.999
MA0091.1	MA0091.1	0.0172
MA0092.1	MA0092.1	0.546
MA0093.1	MA0093.1	0.565
MA0099.2	MA0099.2	1.6098e-16
MA0100.1	MA0100.1	0.476
MA0101.1	MA0101.1	0.0569
MA0102.2	MA0102.2	0.00289
MA0103.1	MA0103.1	0.399
MA0104.2	MA0104.2	0.364
MA0105.1	MA0105.1	0.00465
MA0106.1	MA0106.1	0.141
MA0107.1	MA0107.1	0.0111
MA0108.2	MA0108.2	0.666
MA0111.1	MA0111.1	0.838
MA0112.2	MA0112.2	1.56202e-5
MA0113.1	MA0113.1	0.101
MA0114.1	MA0114.1	0.688
MA0115.1	MA0115.1	0.325
MA0116.1	MA0116.1	0.0335
MA0117.1	MA0117.1	0.263
MA0119.1	MA0119.1	0.0671
MA0122.1	MA0122.1	0.848
MA0124.1	MA0124.1	0.811
MA0125.1	MA0125.1	0.49
MA0131.1	MA0131.1	0.281
MA0135.1	MA0135.1	0.445
MA0136.1	MA0136.1	1.44728e-7
MA0137.2	MA0137.2	0.0443
MA0138.2	MA0138.2	0.277
MA0139.1	MA0139.1	0.399
MA0140.1	MA0140.1	0.624
MA0141.1	MA0141.1	0.146
MA0142.1	MA0142.1	0.985
MA0143.1	MA0143.1	0.721
MA0144.1	MA0144.1	0.00421
MA0145.1	MA0145.1	0.73
MA0146.1	MA0146.1	0.786
MA0147.1	MA0147.1	0.365
MA0148.1	MA0148.1	0.0686
MA0149.1	MA0149.1	0.259
MA0150.1	MA0150.1	2.99277e-5
MA0152.1	MA0152.1	0.395
MA0153.1	MA0153.1	0.711
MA0154.1	MA0154.1	0.0169
MA0155.1	MA0155.1	0.888
MA0156.1	MA0156.1	0.00363
MA0157.1	MA0157.1	0.155
MA0159.1	MA0159.1	9.85836e-4
MA0160.1	MA0160.1	0.115
MA0162.1	MA0162.1	0.949
MA0163.1	MA0163.1	0.00202
MA0164.1	MA0164.1	0.568
MA0258.1	MA0258.1	0.0209
MA0259.1	MA0259.1	0.365

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11884

Novel motif	Logo	P-value
1	1	0.149
10	10	0.239
100	100	0.359
101	101	0.797
102	102	0.424
103	103	0.0245
104	104	0.422
105	105	0.273
106	106	0.16
107	107	0.952
108	108	0.969
109	109	0.0473
11	11	0.0893
110	110	0.963
111	111	0.00149
112	112	0.0516
113	113	0.0717
114	114	0.0281
115	115	0.41
116	116	0.888
117	117	0.752
118	118	0.475
119	119	0.215
12	12	0.929
120	120	0.765
121	121	0.681
122	122	0.887
123	123	0.966
124	124	0.547
125	125	0.995
126	126	0.59
127	127	0.0503
128	128	0.744
129	129	0.296
13	13	0.472
130	130	0.0217
131	131	0.486
132	132	0.656
133	133	0.172
134	134	0.764
135	135	5.69805e-5
136	136	0.209
137	137	0.059
138	138	0.178
139	139	0.00534
14	14	0.947
140	140	0.108
141	141	0.177
142	142	0.435
143	143	0.00606
144	144	0.892
145	145	0.748
146	146	0.495
147	147	0.802
148	148	0.0113
149	149	0.0327
15	15	0.164
150	150	0.824
151	151	0.0354
152	152	0.663
153	153	0.485
154	154	0.807
155	155	0.596
156	156	0.685
157	157	0.915
158	158	0.168
159	159	0.417
16	16	0.375
160	160	0.481
161	161	0.397
162	162	0.754
163	163	0.289
164	164	0.375
165	165	0.219
166	166	0.613
167	167	0.202
168	168	0.027
169	169	0.0279
17	17	0.219
18	18	0.141
19	19	0.545
2	2	0.342
20	20	0.491
21	21	0.932
22	22	0.362
23	23	0.00959
24	24	0.659
25	25	0.119
26	26	0.959
27	27	0.0928
28	28	0.575
29	29	0.393
3	3	0.243
30	30	0.854
31	31	0.672
32	32	0.13
33	33	0.94
34	34	0.643
35	35	0.341
36	36	0.962
37	37	0.916
38	38	0.535
39	39	0.551
4	4	0.971
40	40	0.259
41	41	0.162
42	42	0.547
43	43	0.163
44	44	0.855
45	45	0.698
46	46	0.206
47	47	0.763
48	48	0.72
49	49	0.232
5	5	0.13
50	50	0.766
51	51	0.529
52	52	0.4
53	53	0.987
54	54	0.489
55	55	0.0145
56	56	0.829
57	57	0.978
58	58	0.0907
59	59	0.134
6	6	0.96
60	60	0.065
61	61	0.533
62	62	0.0471
63	63	0.163
64	64	0.228
65	65	0.119
66	66	0.367
67	67	0.484
68	68	0.558
69	69	0.621
7	7	0.48
70	70	0.00264
71	71	0.158
72	72	0.165
73	73	0.43
74	74	0.183
75	75	0.76
76	76	0.958
77	77	0.585
78	78	0.746
79	79	0.341
8	8	0.242
80	80	0.0663
81	81	0.164
82	82	0.0614
83	83	0.0881
84	84	0.985
85	85	0.00348
86	86	0.166
87	87	0.178
88	88	0.762
89	89	0.00537
9	9	0.275
90	90	0.272
91	91	0.145
92	92	0.0444
93	93	0.664
94	94	0.122
95	95	0.977
96	96	0.102
97	97	0.864
98	98	0.29
99	99	0.698

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11884

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100306 (teratocarcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004827
+|accession_numbers=CAGE;DRX008020;DRR008892;DRZ000317;DRZ001702;DRZ011667;DRZ013052
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.52!332.84!HAND1;;chr3:27764190..27764208,-!p2@EOMES!2.24!173.70!EOMES;;chr14:57277178..57277203,-!p1@OTX2!2.12!131.39!OTX2;;chr3:27763807..27763822,-!p1@EOMES!1.85!69.56!EOMES;;chr7:19157248..19157268,-!p1@TWIST1!1.79!160.27!TWIST1;;chr10:8096631..8096660,+!p1@GATA3!1.72!62.34!GATA3;;chrX:136648279..136648295,+!p1@ZIC3!1.68!47.01!ZIC3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.67!45.86!LHX1;;chr20:31350184..31350200,+!p1@DNMT3B!1.66!89.70!DNMT3B;;chr8:145701192..145701241,-!p1@FOXH1!1.59!38.01!FOXH1;;chr10:8095593..8095625,+!p3@GATA3!1.56!40.92!GATA3;;chr16:54320617..54320643,-!p3@IRX3!1.53!41.43!IRX3;;chr5:174151612..174151633,+!p2@MSX2!1.52!31.80!MSX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.34!ZNF385A;;chr5:172662197..172662216,-!p1@NKX2-5!1.46!27.75!NKX2-5;;chr5:174151553..174151610,+!p1@MSX2!1.45!44.98!MSX2;;chr2:171571827..171571853,+!p1@SP5!1.45!27.11!SP5;;chr17:45933057..45933064,-!p3@SP6!1.45!27.11!SP6;;chr1:226411361..226411366,+!p1@MIXL1!1.43!25.85!MIXL1;;chr16:54320646..54320672,-!p2@IRX3!1.41!37.50!IRX3;;chr12:66218255..66218304,+!p3@HMGA2!1.40!63.73!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.86!PITX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.38!25.85!ZNF385A;;chr16:30102547..30102556,-!p6@TBX6!1.38!22.93!TBX6;;chr16:54320675..54320715,-!p1@IRX3!1.37!47.77!IRX3;;chr2:25475120..25475176,-!p2@DNMT3A!1.36!29.65!DNMT3A;;chr9:127533519..127533573,-!p2@NR6A1!1.35!25.47!NR6A1;;chr14:37131058..37131139,+!p1@PAX9!1.35!21.54!PAX9;;chr12:56414795..56414836,+!p4@IKZF4!1.32!19.89!IKZF4;;chr7:35293685..35293718,-!p1@TBX20!1.32!19.76!TBX20;;chr11:63684602..63684664,-!p1@RCOR2!1.31!37.76!RCOR2;;chr14:35873136..35873155,-!p9@NFKBIA!1.31!22.68!NFKBIA;;chr10:8097321..8097348,+!p4@GATA3!1.31!19.51!GATA3;;chrX:136648297..136648319,+!p3@ZIC3!1.30!19.00!ZIC3;;chr12:66218183..66218209,+!p4@HMGA2!1.29!35.48!HMGA2;;chr15:90294478..90294480,-!p6@MESP1!1.28!18.24!MESP1;;chr10:8096772..8096787,+!p2@GATA3!1.26!20.27!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!1.26!17.23!PKNOX2;;chr12:66218378..66218401,+!p6@HMGA2!1.24!25.47!HMGA2;;chr8:11561684..11561751,+!p1@GATA4!1.24!16.47!GATA4;;chrX:136648643..136648711,+!p2@ZIC3!1.24!16.34!ZIC3;;chr12:19556998..19557013,+!p6@AEBP2!1.24!16.22!AEBP2;;chr12:3068544..3068597,+!p1@TEAD4!1.20!87.68!TEAD4;;chr5:153857800..153857812,-!p2@HAND1!1.19!14.32!HAND1;;chr1:221052733..221052749,+!p2@HLX!1.18!18.24!HLX;;chr5:134369879..134369898,-!p2@PITX1!1.18!14.19!PITX1;;chr12:19556960..19556982,+!p10@AEBP2!1.18!14.19!AEBP2;;chr20:50418972..50419029,-!p1@SALL4!1.17!13.94!SALL4;;chr7:20826504..20826526,-!p1@SP8!1.17!13.81!SP8;;chr12:2986206..2986258,-!p2@FOXM1!1.15!79.44!FOXM1;;chr8:25902876..25902936,-!p1@EBF2!1.15!13.18!EBF2;;chr14:21562671..21562702,-!p8@ZNF219!1.14!12.80!ZNF219;;chr14:21994337..21994442,-!p1@SALL2!1.13!34.34!SALL2;;chr12:66218212..66218244,+!p5@HMGA2!1.13!18.37!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.40!HMGA2;;chrX:25034067..25034088,-!p1@ARX!1.12!12.16!ARX;;chr12:66218598..66218645,+!p2@HMGA2!1.10!53.34!HMGA2;;chr11:61520075..61520136,+!p1@C11orf9!1.10!24.58!C11orf9;;chr20:62680984..62680999,-!p1@SOX18!1.10!15.46!SOX18;;chr4:4861385..4861398,+!p1@MSX1!1.09!33.58!MSX1;;chr1:221052776..221052799,+!p1@HLX!1.09!20.65!HLX;;chr16:51185573..51185593,-!p3@SALL1!1.08!10.90!SALL1;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.64!ZFY;;chr2:25475094..25475112,-!p3@DNMT3A!1.06!10.39!DNMT3A;;chr15:74833584..74833626,+!p1@ARID3B!1.05!24.20!ARID3B;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.26!KDM5D;;chr17:41739283..41739297,-!p1@MEOX1!1.04!10.01!MEOX1;;chr3:147111231..147111281,+!p3@ZIC1!1.04!9.88!ZIC1;;chr7:20826426..20826432,-!p2@SP8!1.04!9.88!SP8;;chr19:58545454..58545498,+!p1@ZSCAN1!1.03!9.63!ZSCAN1;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.02!HOXB2;;chr3:27761692..27761705,-!p4@EOMES!1.02!9.50!EOMES;;chr12:66357214..66357233,+!p13@HMGA2!1.02!9.50!HMGA2;;chr12:8186270..8186292,+!p3@FOXJ2!1.02!9.50!FOXJ2;;chr13:100623375..100623425,-!p1@ZIC5!1.02!9.38!ZIC5;;chr16:29818199..29818216,+!p11@MAZ!1.01!15.46!MAZ;;chr11:19263160..19263176,-!p1@E2F8!1.01!11.02!E2F8;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.01!9.12!SEBOX;;chr12:85673977..85674015,+!p1@ALX1!0.99!8.74!ALX1;;chr13:100634031..100634045,+!p1@ZIC2!0.99!8.74!ZIC2;;chr14:57272369..57272391,-!p2@OTX2!0.99!8.74!OTX2;;chrX:55620497..55620512,+!p@chrX:55620497..55620512,+!0.99!8.74!FOXR2;;chr20:32274179..32274213,-!p1@E2F1!0.98!57.77!E2F1;;chr12:66218152..66218174,+!p10@HMGA2!0.98!9.25!HMGA2;;chr9:127533582..127533615,-!p1@NR6A1!0.97!12.67!NR6A1;;chr17:45928521..45928539,-!p1@SP6!0.97!8.36!SP6;;chr19:46800289..46800327,+!p2@HIF3A!0.97!8.36!HIF3A;;chr1:247171347..247171366,-!p2@ZNF695!0.96!15.08!ZNF695;;chr19:22817119..22817145,+!p1@ZNF492!0.96!13.81!ZNF492;;chr16:51185363..51185381,-!p4@SALL1!0.96!8.11!SALL1;;chr20:50419055..50419066,-!p3@SALL4!0.96!8.11!SALL4;;chr8:93115584..93115642,-!p5@RUNX1T1!0.96!8.11!RUNX1T1;;chr20:6748325..6748352,+!p1@BMP2!0.95!11.66!BMP2;;chr4:109090075..109090095,-!p2@LEF1!0.95!7.86!LEF1;;chr1:165414325..165414369,-!p1@RXRG!0.94!7.73!RXRG;;chr12:2986275..2986363,-!p1@FOXM1!0.93!77.67!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.93!52.71!MXD3;;chr20:45142154..45142227,-!p1@ZNF334!0.93!15.33!ZNF334;;chr12:66218573..66218596,+!p7@HMGA2!0.93!11.53!HMGA2;;chr3:40547564..40547616,+!p1@ZNF620!0.93!10.90!ZNF620;;chr9:129376201..129376225,+!p1@LMX1B!0.93!7.60!LMX1B;;chr9:129376233..129376251,+!p2@LMX1B!0.93!7.48!LMX1B;;chr12:66218420..66218439,+!p12@HMGA2!0.93!7.48!HMGA2;;chr3:147111198..147111225,+!p4@ZIC1!0.92!7.35!ZIC1;;chr19:48325184..48325211,+!p1@CRX!0.92!7.35!CRX;;chr10:114710098..114710130,+!p2@TCF7L2!0.91!55.37!TCF7L2;;chr20:42295713..42295738,+!p2@MYBL2!0.91!43.58!MYBL2;;chr13:100634004..100634025,+!p2@ZIC2!0.91!7.22!ZIC2;;chr14:23588816..23588836,-!p4@CEBPE!0.91!7.22!CEBPE;;chr1:221052994..221053008,+!p6@HLX!0.90!8.24!HLX;;chr10:8097295..8097320,+!p6@GATA3!0.90!6.97!GATA3;;chr12:3068634..3068656,+!p5@TEAD4!0.90!6.97!TEAD4;;chr5:50679228..50679288,+!p1@ISL1!0.90!6.97!ISL1;;chr1:221052700..221052730,+!p5@HLX!0.89!10.52!HLX;;chr17:38465441..38465481,+!p6@RARA!0.89!8.49!RARA;;chr3:193853927..193853944,+!p1@HES1!0.88!225.27!HES1;;chr16:29818160..29818188,+!p6@MAZ!0.88!32.18!MAZ;;chr5:124084493..124084524,-!p2@ZNF608!0.88!15.33!ZNF608;;chr19:926055..926068,+!p2@ARID3A!0.88!14.82!ARID3A;;chr19:926001..926046,+!p1@ARID3A!0.87!23.19!ARID3A;;chr7:156803329..156803362,-!p1@MNX1!0.87!6.46!MNX1;;chr12:6798056..6798102,-!p3@ZNF384!0.86!19.38!ZNF384;;chr8:86089417..86089440,+!p2@E2F5!0.86!12.92!E2F5;;chr7:64254834..64254854,+!p2@ZNF138!0.86!11.66!ZNF138;;chr12:24715376..24715432,-!p1@SOX5!0.86!7.98!SOX5;;chr12:7079780..7079791,-!p2@PHB2!0.85!33.45!PHB2;;chr1:221052840..221052875,+!p4@HLX!0.85!7.35!HLX;;chr17:46622229..46622257,-!p6@HOXB2!0.85!7.22!HOXB2;;chr20:42295745..42295765,+!p1@MYBL2!0.84!104.15!MYBL2;;chr20:50159198..50159299,-!p1@NFATC2!0.84!9.00!NFATC2;;chr1:33721900..33721921,+!p2@ZNF362!0.83!14.70!ZNF362;;chr16:54320158..54320200,-!p5@IRX3!0.83!8.62!IRX3;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.60!HMGA2;;chr10:114889045..114889074,+!p12@TCF7L2!0.83!5.70!TCF7L2;;chr1:24645832..24645853,+!p1@GRHL3!0.83!5.70!GRHL3;;chr19:12203100..12203132,+!p1@ZNF788!0.82!12.04!ZNF788;;chr12:66218003..66218018,+!p9@HMGA2!0.82!6.97!HMGA2;;chr3:27762020..27762023,-!p5@EOMES!0.82!5.57!EOMES;;chr10:70320074..70320106,+!p1@TET1!0.81!11.66!TET1;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.50!MLLT11;;chr1:247171316..247171336,-!p3@ZNF695!0.81!8.36!ZNF695;;chr14:24553835..24553850,-!p1@NRL!0.81!5.45!NRL;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.81!5.45!ZNF676;;chr9:126774018..126774055,+!p1@LHX2!0.81!5.45!LHX2;;chr19:21264991..21265026,+!p1@ZNF714!0.80!37.25!ZNF714;;chr7:19157043..19157088,-!p2@TWIST1!0.80!14.32!TWIST1;;chr3:44626446..44626477,+!p1@ZNF660!0.80!9.88!ZNF660;;chr12:3068501..3068515,+!p4@TEAD4!0.80!9.63!TEAD4;;chr18:42260840..42260860,+!p2@SETBP1!0.80!5.32!SETBP1;;chr15:66994561..66994597,+!p2@SMAD6!0.79!13.18!SMAD6;;chr19:58400344..58400364,-!p2@ZNF814!0.79!7.73!ZNF814;;chr1:164528687..164528711,+!p6@PBX1!0.79!6.08!PBX1;;chr10:135051353..135051367,+!p1@VENTX!0.79!5.19!VENTX;;chr12:56414851..56414871,+!p6@IKZF4!0.79!5.19!IKZF4;;chr13:100638100..100638115,+!p4@ZIC2!0.79!5.19!ZIC2;;chr8:80679993..80680011,-!p1@HEY1!0.78!7.48!HEY1;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.78!5.07!ZNF177;;chr1:165414227..165414242,-!p2@RXRG!0.78!5.07!RXRG;;chr1:221052669..221052678,+!p12@HLX!0.78!5.07!HLX;;chr15:90294523..90294532,-!p9@MESP1!0.78!5.07!MESP1;;chr19:24097706..24097731,+!p2@ZNF726!0.77!9.88!ZNF726;;chr19:22235279..22235301,+!p1@ZNF257!0.77!9.63!ZNF257;;chr17:59477197..59477212,+!p2@TBX2!0.77!8.74!TBX2;;chr15:90294062..90294079,-!p2@MESP1!0.77!4.94!MESP1;;chr9:20622444..20622468,-!p2@MLLT3!0.76!16.85!MLLT3;;chr10:44070016..44070069,-!p1@ZNF239!0.76!15.33!ZNF239;;chr12:66358080..66358094,+!p15@HMGA2!0.76!4.81!HMGA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.75!48.40!ZNF595;;chr12:19592405..19592492,+!p2@AEBP2!0.75!44.22!AEBP2;;chr20:306177..306211,+!p2@SOX12!0.75!35.10!SOX12;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.41!ETV4;;chr5:138647473..138647476,+!p6@MATR3!0.74!12.16!MATR3;;chr17:38465413..38465438,+!p5@RARA!0.74!7.48!RARA;;chr12:50479109..50479146,+!p2@SMARCD1!0.73!82.86!SMARCD1;;chr15:66994663..66994680,+!p1@SMAD6!0.73!11.15!SMAD6;;chr19:23299814..23299844,+!p1@ZNF730!0.73!5.45!ZNF730;;chr19:53193731..53193767,-!p1@ZNF83!0.72!42.70!ZNF83;;chr9:20622478..20622525,-!p1@MLLT3!0.72!37.38!MLLT3;;chr19:23433144..23433204,-!p1@ZNF724P!0.72!21.03!ZNF724P;;chr2:121493425..121493474,+!p1@GLI2!0.72!10.14!GLI2;;chr9:20621927..20621996,-!p3@MLLT3!0.72!7.60!MLLT3;;chr15:74833547..74833567,+!p2@ARID3B!0.72!6.33!ARID3B;;chr5:153857819..153857824,-!p3@HAND1!0.72!4.31!HAND1;;chr5:172662230..172662241,-!p3@NKX2-5!0.72!4.31!NKX2-5;;chr22:42739839..42739867,-!p1@ENST00000515426!0.72!4.31!TCF20;;chr3:39196117..39196139,-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@@ Line 37: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10798-110I6
 |is_a=EFO:0002091;;FF:0000210;;FF:0100306
 |is_obsolete=
+|library_id=CNhs11884
+|library_id_phase_based=2:CNhs11884
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10798
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10798
 |name=teratocarcinoma cell line:NCR-G1
 |namespace=FANTOM5
@@ Line 45: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11884,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 62: / Line 77: @@
 |rna_weight_ug=102.78054
 |sample_age=embryo
+|sample_category=cell lines
 |sample_cell_catalog=jcrb1166
 |sample_cell_line=NCR-G1
@@ Line 83: / Line 99: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10798-110I6;search_select_hide=table117:FF:10798-110I6
 }}

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FF:10798-110I6: Difference between revisions

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Latest revision as of 15:05, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0