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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004989
|DRA_sample_Accession=CAGE@SAMD00004989
|accession_numbers=CAGE;DRX007884;DRR008756;DRZ000181;DRZ001566
|accession_numbers=CAGE;DRX007884;DRR008756;DRZ000181;DRZ001566;DRZ011531;DRZ012916
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
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|library_id=CNhs12327
|library_id=CNhs12327
|library_id_phase_based=2:CNhs12327
|library_id_phase_based=2:CNhs12327
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10817
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10817
|name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3
|name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 95: Line 99:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.17337527793;E2F1..5:1.9551279654;FOXD3:1.63068437129;FOXQ1:1.61981118553;ELK1,4_GABP{A,B1}:1.54019427421;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.50380645481;HOX{A6,A7,B6,B7}:1.42563041279;YY1:1.35665469896;TFDP1:1.34278445261;NFY{A,B,C}:1.25900503149;ZNF143:1.25867792225;PITX1..3:1.1902920771;ESRRA:1.18662449962;PPARG:1.14402886533;NRF1:1.13224241095;bHLH_family:1.08440454954;NR5A1,2:1.02124791502;PAX1,9:1.00816031207;MYB:0.933848169802;NR6A1:0.909120633001;TOPORS:0.90273862029;POU2F1..3:0.888014948775;ARID5B:0.887809780163;VSX1,2:0.84254251004;ZBTB16:0.841117783677;PAX8:0.797014342964;POU3F1..4:0.752035233559;SOX{8,9,10}:0.687440506957;HNF4A_NR2F1,2:0.65445908637;ZNF148:0.652606175735;IKZF1:0.612890832984;FOXM1:0.588578093108;TEF:0.580456768188;GFI1:0.576671010908;NKX3-2:0.569830459817;FOXN1:0.556751887145;PAX3,7:0.544035595087;CDX1,2,4:0.531865928375;HBP1_HMGB_SSRP1_UBTF:0.496713705241;FOX{I1,J2}:0.487854275588;AIRE:0.468099224935;RFX2..5_RFXANK_RFXAP:0.46681458968;NKX3-1:0.445662068599;FOXA2:0.435584967971;PAX4:0.410712806033;POU1F1:0.401523661466;ELF1,2,4:0.391791381116;BREu{core}:0.384703079763;CUX2:0.35538942478;STAT5{A,B}:0.335941466045;HOXA9_MEIS1:0.327379531677;FOXP1:0.317253791478;HOX{A5,B5}:0.307039418938;NKX2-1,4:0.283412567131;ZEB1:0.276356341639;OCT4_SOX2{dimer}:0.216401322191;CDC5L:0.207103901829;SNAI1..3:0.203872388184;PBX1:0.199549458686;NFE2L2:0.188390633487;PRRX1,2:0.17006678219;RORA:0.150537090475;NR1H4:0.146250665806;TEAD1:0.144399382185;HES1:0.140645176719;ZNF384:0.136460684347;NFE2L1:0.132981109819;FOX{F1,F2,J1}:0.121723111319;MYOD1:0.109373053176;NKX6-1,2:0.0894488179988;ZNF423:0.0889990240749;GTF2A1,2:0.0750476505962;HSF1,2:0.040575984563;UFEwm:0.0386409157036;CEBPA,B_DDIT3:0.0227499050119;IRF7:0.0179410693186;EVI1:0.00542590165265;ATF5_CREB3:0.00387208166854;CREB1:-0.0123697401431;NFE2:-0.02303826764;NFIX:-0.0327374502511;TBX4,5:-0.0380185094366;BPTF:-0.0524650582891;HNF1A:-0.0658601145104;PDX1:-0.0743870475022;TLX2:-0.0793022924356;GCM1,2:-0.0963535419542;ALX1:-0.101491145013;BACH2:-0.113383767342;EN1,2:-0.137675288883;GATA6:-0.140960378339;RXRA_VDR{dimer}:-0.146456531858;FOS_FOS{B,L1}_JUN{B,D}:-0.166131410753;HLF:-0.172616367309;LMO2:-0.174157622602;LHX3,4:-0.184211633006;ONECUT1,2:-0.184800416646;DBP:-0.192262690349;IKZF2:-0.221275319224;POU5F1:-0.22750049792;PAX2:-0.230089539001;KLF4:-0.230610682321;TLX1..3_NFIC{dimer}:-0.231753512307;AR:-0.237391034283;GFI1B:-0.24685987778;AHR_ARNT_ARNT2:-0.252108770305;FOXL1:-0.256537851017;RFX1:-0.264097186439;MYBL2:-0.275901266487;LEF1_TCF7_TCF7L1,2:-0.286204395486;FOSL2:-0.290822935728;ZFP161:-0.30198230533;POU6F1:-0.307290710911;RBPJ:-0.308373679987;GZF1:-0.311388577307;MTF1:-0.313653954141;JUN:-0.315533893219;CRX:-0.319121865991;ZBTB6:-0.3221489874;HAND1,2:-0.336803594358;TP53:-0.369427987183;ADNP_IRX_SIX_ZHX:-0.400917842695;HIF1A:-0.406163298751;ESR1:-0.426012992948;HOX{A4,D4}:-0.427547962511;NFKB1_REL_RELA:-0.430884566959;MEF2{A,B,C,D}:-0.432486298602;HIC1:-0.438479567496;ATF4:-0.442939377844;HMGA1,2:-0.446176700685;RXR{A,B,G}:-0.449914591289;EBF1:-0.450886378983;FOXO1,3,4:-0.459430704106;EP300:-0.472421364257;FOXP3:-0.472994823517;STAT2,4,6:-0.473593050191;SPIB:-0.4798098413;NANOG:-0.48214040821;SOX5:-0.484986240989;XCPE1{core}:-0.489729648795;MED-1{core}:-0.497775535861;TFAP2B:-0.511595622726;NR3C1:-0.527896224255;GTF2I:-0.541211112467;PAX5:-0.544140147471;TFAP2{A,C}:-0.557628368875;TBP:-0.563625246995;SPI1:-0.573178638601;SREBF1,2:-0.589678536943;DMAP1_NCOR{1,2}_SMARC:-0.612355433112;REST:-0.620842658313;NFIL3:-0.639081990824;STAT1,3:-0.647627512501;RUNX1..3:-0.661540581601;TAL1_TCF{3,4,12}:-0.706527645073;TFCP2:-0.729038767675;ETS1,2:-0.74245921905;IRF1,2:-0.743412732507;FOX{D1,D2}:-0.753361548673;GLI1..3:-0.761391952738;SP1:-0.774894701046;NKX2-3_NKX2-5:-0.775264643609;NKX2-2,8:-0.785755910883;GATA4:-0.803287570355;ALX4:-0.803760401743;EGR1..3:-0.83148030876;SOX2:-0.84322841386;PRDM1:-0.857339303743;SOX17:-0.866113415541;RREB1:-0.894214428055;PATZ1:-0.908449741813;PAX6:-0.940577279645;NHLH1,2:-0.947733096795;MAZ:-1.05163805058;ZIC1..3:-1.05463527815;MYFfamily:-1.06400478969;NANOG{mouse}:-1.09223563764;ATF2:-1.13218454575;ZNF238:-1.15498061528;SRF:-1.17545751079;XBP1:-1.17744387952;T:-1.17836426765;MTE{core}:-1.18647546864;ATF6:-1.24059135972;TGIF1:-1.27387724247;MZF1:-1.29517259925;NFATC1..3:-1.30725893485;MAFB:-1.37570790969;TFAP4:-1.42662540051;SMAD1..7,9:-1.74739906056;HMX1:-1.92545083969;SPZ1:-2.01785699449
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.17337527793;E2F1..5:1.9551279654;FOXD3:1.63068437129;FOXQ1:1.61981118553;ELK1,4_GABP{A,B1}:1.54019427421;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.50380645481;HOX{A6,A7,B6,B7}:1.42563041279;YY1:1.35665469896;TFDP1:1.34278445261;NFY{A,B,C}:1.25900503149;ZNF143:1.25867792225;PITX1..3:1.1902920771;ESRRA:1.18662449962;PPARG:1.14402886533;NRF1:1.13224241095;bHLH_family:1.08440454954;NR5A1,2:1.02124791502;PAX1,9:1.00816031207;MYB:0.933848169802;NR6A1:0.909120633001;TOPORS:0.90273862029;POU2F1..3:0.888014948775;ARID5B:0.887809780163;VSX1,2:0.84254251004;ZBTB16:0.841117783677;PAX8:0.797014342964;POU3F1..4:0.752035233559;SOX{8,9,10}:0.687440506957;HNF4A_NR2F1,2:0.65445908637;ZNF148:0.652606175735;IKZF1:0.612890832984;FOXM1:0.588578093108;TEF:0.580456768188;GFI1:0.576671010908;NKX3-2:0.569830459817;FOXN1:0.556751887145;PAX3,7:0.544035595087;CDX1,2,4:0.531865928375;HBP1_HMGB_SSRP1_UBTF:0.496713705241;FOX{I1,J2}:0.487854275588;AIRE:0.468099224935;RFX2..5_RFXANK_RFXAP:0.46681458968;NKX3-1:0.445662068599;FOXA2:0.435584967971;PAX4:0.410712806033;POU1F1:0.401523661466;ELF1,2,4:0.391791381116;BREu{core}:0.384703079763;CUX2:0.35538942478;STAT5{A,B}:0.335941466045;HOXA9_MEIS1:0.327379531677;FOXP1:0.317253791478;HOX{A5,B5}:0.307039418938;NKX2-1,4:0.283412567131;ZEB1:0.276356341639;OCT4_SOX2{dimer}:0.216401322191;CDC5L:0.207103901829;SNAI1..3:0.203872388184;PBX1:0.199549458686;NFE2L2:0.188390633487;PRRX1,2:0.17006678219;RORA:0.150537090475;NR1H4:0.146250665806;TEAD1:0.144399382185;HES1:0.140645176719;ZNF384:0.136460684347;NFE2L1:0.132981109819;FOX{F1,F2,J1}:0.121723111319;MYOD1:0.109373053176;NKX6-1,2:0.0894488179988;ZNF423:0.0889990240749;GTF2A1,2:0.0750476505962;HSF1,2:0.040575984563;UFEwm:0.0386409157036;CEBPA,B_DDIT3:0.0227499050119;IRF7:0.0179410693186;EVI1:0.00542590165265;ATF5_CREB3:0.00387208166854;CREB1:-0.0123697401431;NFE2:-0.02303826764;NFIX:-0.0327374502511;TBX4,5:-0.0380185094366;BPTF:-0.0524650582891;HNF1A:-0.0658601145104;PDX1:-0.0743870475022;TLX2:-0.0793022924356;GCM1,2:-0.0963535419542;ALX1:-0.101491145013;BACH2:-0.113383767342;EN1,2:-0.137675288883;GATA6:-0.140960378339;RXRA_VDR{dimer}:-0.146456531858;FOS_FOS{B,L1}_JUN{B,D}:-0.166131410753;HLF:-0.172616367309;LMO2:-0.174157622602;LHX3,4:-0.184211633006;ONECUT1,2:-0.184800416646;DBP:-0.192262690349;IKZF2:-0.221275319224;POU5F1:-0.22750049792;PAX2:-0.230089539001;KLF4:-0.230610682321;TLX1..3_NFIC{dimer}:-0.231753512307;AR:-0.237391034283;GFI1B:-0.24685987778;AHR_ARNT_ARNT2:-0.252108770305;FOXL1:-0.256537851017;RFX1:-0.264097186439;MYBL2:-0.275901266487;LEF1_TCF7_TCF7L1,2:-0.286204395486;FOSL2:-0.290822935728;ZFP161:-0.30198230533;POU6F1:-0.307290710911;RBPJ:-0.308373679987;GZF1:-0.311388577307;MTF1:-0.313653954141;JUN:-0.315533893219;CRX:-0.319121865991;ZBTB6:-0.3221489874;HAND1,2:-0.336803594358;TP53:-0.369427987183;ADNP_IRX_SIX_ZHX:-0.400917842695;HIF1A:-0.406163298751;ESR1:-0.426012992948;HOX{A4,D4}:-0.427547962511;NFKB1_REL_RELA:-0.430884566959;MEF2{A,B,C,D}:-0.432486298602;HIC1:-0.438479567496;ATF4:-0.442939377844;HMGA1,2:-0.446176700685;RXR{A,B,G}:-0.449914591289;EBF1:-0.450886378983;FOXO1,3,4:-0.459430704106;EP300:-0.472421364257;FOXP3:-0.472994823517;STAT2,4,6:-0.473593050191;SPIB:-0.4798098413;NANOG:-0.48214040821;SOX5:-0.484986240989;XCPE1{core}:-0.489729648795;MED-1{core}:-0.497775535861;TFAP2B:-0.511595622726;NR3C1:-0.527896224255;GTF2I:-0.541211112467;PAX5:-0.544140147471;TFAP2{A,C}:-0.557628368875;TBP:-0.563625246995;SPI1:-0.573178638601;SREBF1,2:-0.589678536943;DMAP1_NCOR{1,2}_SMARC:-0.612355433112;REST:-0.620842658313;NFIL3:-0.639081990824;STAT1,3:-0.647627512501;RUNX1..3:-0.661540581601;TAL1_TCF{3,4,12}:-0.706527645073;TFCP2:-0.729038767675;ETS1,2:-0.74245921905;IRF1,2:-0.743412732507;FOX{D1,D2}:-0.753361548673;GLI1..3:-0.761391952738;SP1:-0.774894701046;NKX2-3_NKX2-5:-0.775264643609;NKX2-2,8:-0.785755910883;GATA4:-0.803287570355;ALX4:-0.803760401743;EGR1..3:-0.83148030876;SOX2:-0.84322841386;PRDM1:-0.857339303743;SOX17:-0.866113415541;RREB1:-0.894214428055;PATZ1:-0.908449741813;PAX6:-0.940577279645;NHLH1,2:-0.947733096795;MAZ:-1.05163805058;ZIC1..3:-1.05463527815;MYFfamily:-1.06400478969;NANOG{mouse}:-1.09223563764;ATF2:-1.13218454575;ZNF238:-1.15498061528;SRF:-1.17545751079;XBP1:-1.17744387952;T:-1.17836426765;MTE{core}:-1.18647546864;ATF6:-1.24059135972;TGIF1:-1.27387724247;MZF1:-1.29517259925;NFATC1..3:-1.30725893485;MAFB:-1.37570790969;TFAP4:-1.42662540051;SMAD1..7,9:-1.74739906056;HMX1:-1.92545083969;SPZ1:-2.01785699449
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10817-111B7;search_select_hide=table117:FF:10817-111B7
}}
}}

Latest revision as of 15:06, 3 June 2020

Name:epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3
Species:Human (Homo sapiens)
Library ID:CNhs12327
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
ageNA
cell typeepithelial cell
cell lineHelaS3
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004989
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12327 CAGE DRX007884 DRR008756
Accession ID Hg19

Library idBAMCTSS
CNhs12327 DRZ000181 DRZ001566
Accession ID Hg38

Library idBAMCTSS
CNhs12327 DRZ011531 DRZ012916
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.162
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0.315
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.636
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0256
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0.606
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0845
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.117
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0.0343
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.027
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00428
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0343
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0475
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.516
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0343
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00912
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0313
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.591
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0.0343
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12327

Jaspar motifP-value
MA0002.20.014
MA0003.10.261
MA0004.10.151
MA0006.10.661
MA0007.10.52
MA0009.10.41
MA0014.10.706
MA0017.10.434
MA0018.20.843
MA0019.10.441
MA0024.12.99694e-7
MA0025.10.0566
MA0027.10.73
MA0028.14.38507e-8
MA0029.10.0348
MA0030.10.372
MA0031.10.896
MA0035.20.0103
MA0038.10.159
MA0039.20.0151
MA0040.10.35
MA0041.10.403
MA0042.10.695
MA0043.10.892
MA0046.10.296
MA0047.20.967
MA0048.10.00334
MA0050.10.082
MA0051.10.535
MA0052.13.77939e-5
MA0055.15.73382e-5
MA0057.10.605
MA0058.10.0532
MA0059.10.0374
MA0060.12.49046e-11
MA0061.10.0214
MA0062.25.70112e-6
MA0065.20.0257
MA0066.10.811
MA0067.10.197
MA0068.10.059
MA0069.10.623
MA0070.10.315
MA0071.10.116
MA0072.10.232
MA0073.10.274
MA0074.10.521
MA0076.15.00553e-7
MA0077.10.881
MA0078.10.14
MA0079.20.47
MA0080.21.01302e-7
MA0081.10.364
MA0083.14.66696e-4
MA0084.10.448
MA0087.10.629
MA0088.17.56926e-4
MA0090.10.537
MA0091.10.027
MA0092.10.419
MA0093.10.1
MA0099.20.0463
MA0100.10.378
MA0101.10.168
MA0102.20.345
MA0103.10.161
MA0104.20.00146
MA0105.10.301
MA0106.10.945
MA0107.10.0241
MA0108.20.0669
MA0111.10.575
MA0112.20.612
MA0113.10.722
MA0114.10.0349
MA0115.10.00511
MA0116.10.511
MA0117.10.635
MA0119.10.296
MA0122.10.513
MA0124.10.706
MA0125.10.604
MA0131.10.0433
MA0135.10.114
MA0136.10.00632
MA0137.20.203
MA0138.20.0157
MA0139.10.455
MA0140.10.00658
MA0141.10.0426
MA0142.10.97
MA0143.10.114
MA0144.10.404
MA0145.10.76
MA0146.10.0958
MA0147.10.00143
MA0148.10.776
MA0149.10.0287
MA0150.10.632
MA0152.10.392
MA0153.10.567
MA0154.10.16
MA0155.10.0404
MA0156.10.942
MA0157.10.904
MA0159.10.484
MA0160.10.0586
MA0162.10.747
MA0163.10.213
MA0164.10.638
MA0258.10.772
MA0259.10.0562



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12327

Novel motifP-value
10.158
100.067
1000.0559
1010.995
1020.948
1030.101
1040.92
1050.421
1060.0271
1070.0879
1080.325
1090.0338
110.868
1100.274
1110.689
1120.00848
1130.0158
1140.874
1150.789
1160.479
1170.0787
1180.784
1190.945
120.727
1200.554
1210.397
1220.538
1230.54
1240.626
1250.443
1260.824
1270.991
1280.00658
1290.43
137.09021e-5
1300.16
1310.0896
1320.761
1330.168
1340.251
1350.0395
1360.0182
1370.17
1380.759
1390.633
140.367
1400.898
1410.359
1420.644
1430.389
1440.703
1450.203
1460.495
1470.259
1480.341
1490.0656
150.901
1500.732
1510.746
1520.0972
1530.19
1540.842
1550.696
1560.542
1570.24
1580.138
1590.303
160.553
1600.745
1610.196
1620.484
1630.932
1640.276
1650.51
1660.256
1670.146
1680.53
1690.714
170.603
180.0812
190.389
20.143
200.0359
210.775
220.731
236.34859e-4
240.336
250.652
260.527
270.195
280.566
290.0468
30.855
300.0901
310.254
320.114
330.382
340.151
350.73
360.127
370.597
380.704
390.747
40.675
400.0588
410.193
420.564
430.455
440.849
450.275
460.759
470.443
480.47
490.826
50.33
500.983
510.384
520.145
530.588
540.481
550.0282
560.679
570.581
580.979
590.407
60.646
600.176
610.143
620.63
630.677
640.705
650.107
664.71468e-5
670.617
680.891
690.652
70.16
700.103
710.0732
720.413
730.975
740.443
750.0571
760.192
770.757
780.273
790.349
80.48
800.0199
810.591
820.0508
830.794
840.598
850.0777
860.81
870.0348
880.685
890.106
90.215
900.0421
910.00848
920.0448
930.929
940.214
950.0709
960.15
970.62
980.488
990.512



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12327


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011472 (human epitheloid carcinoma cell line: HelaS3 ENCODE sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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