FF:10818-111B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004811 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007905;DRR008777;DRZ000202;DRZ001587;DRZ011552;DRZ012937 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0100599 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.56!358.23!PEG3;;chr6:1312325..1312340,+!p1@FOXQ1!2.39!393.13!FOXQ1;;chr1:27240455..27240474,-!p1@NR0B2!2.18!148.74!NR0B2;;chr2:171571827..171571853,+!p1@SP5!2.09!121.64!SP5;;chrX:131624056..131624069,-!p2@MBNL3!1.99!129.83!MBNL3;;chr17:53342311..53342400,+!p1@HLF!1.97!105.25!HLF;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.93!83.43!SEBOX;;chr17:41622765..41622821,-!p2@ETV4!1.86!106.44!ETV4;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.16!PROX1;;chr17:53344945..53344977,+!p2@HLF!1.85!70.59!HLF;;chr20:43029862..43029900,+!p1@HNF4A!1.84!67.83!HNF4A;;chr7:73038839..73038862,-!p1@MLXIPL!1.83!66.10!MLXIPL;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.80!61.84!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!1.76!56.49!ETV4;;chr12:100867627..100867652,+!p1@NR1H4!1.74!53.65!NR1H4;;chr14:38064429..38064486,-!p1@FOXA1!1.71!49.87!FOXA1;;chr20:22564895..22564910,-!p1@FOXA2!1.62!40.26!FOXA2;;chr17:53344980..53345011,+!p3@HLF!1.58!36.71!HLF;;chrX:131547625..131547644,-!p4@MBNL3!1.55!34.19!MBNL3;;chr12:66218183..66218209,+!p4@HMGA2!1.54!63.34!HMGA2;;chr20:42984330..42984364,+!p2@HNF4A!1.52!32.38!HNF4A;;chr19:33793430..33793447,-!p1@CEBPA!1.50!123.93!CEBPA;;chr17:70117153..70117174,+!p1@SOX9!1.48!287.09!SOX9;;chr2:171572786..171572840,+!p2@SP5!1.48!29.23!SP5;;chr2:171571796..171571808,+!p4@SP5!1.48!28.91!SP5;;chr8:11561684..11561751,+!p1@GATA4!1.45!27.42!GATA4;;chr19:2867325..2867348,+!p1@ZNF556!1.43!25.92!ZNF556;;chr1:226411361..226411366,+!p1@MIXL1!1.42!25.53!MIXL1;;chr12:66218255..66218304,+!p3@HMGA2!1.40!63.66!HMGA2;;chr10:94449703..94449718,+!p1@HHEX!1.39!88.08!HHEX;;chr17:41623692..41623715,-!p1@ETV4!1.37!93.52!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.38!HMGA2;;chr15:53082521..53082549,-!p1@ONECUT1!1.35!21.51!ONECUT1;;chr2:177053386..177053402,+!p1@HOXD1!1.34!20.72!HOXD1;;chr12:100867653..100867677,+!p2@NR1H4!1.33!20.40!NR1H4;;chr20:62680984..62680999,-!p1@SOX18!1.31!25.68!SOX18;;chr11:61520075..61520136,+!p1@C11orf9!1.30!40.02!C11orf9;;chr12:66218003..66218018,+!p9@HMGA2!1.30!23.00!HMGA2;;chr2:171571931..171571959,+!p3@SP5!1.30!19.07!SP5;;chr12:24102576..24102623,-!p2@SOX5!1.27!17.65!SOX5;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.31!PITX1;;chr9:127269661..127269719,-!p1@NR5A1!1.25!16.86!NR5A1;;chr12:66218598..66218645,+!p2@HMGA2!1.24!73.98!HMGA2;;chr19:46367576..46367592,+!p1@FOXA3!1.23!16.15!FOXA3;;chrX:131547596..131547609,-!p10@MBNL3!1.23!16.07!MBNL3;;chr17:41622925..41622976,-!p3@ETV4!1.21!22.45!ETV4;;chr2:25475120..25475176,-!p2@DNMT3A!1.21!20.33!DNMT3A;;chr16:52581025..52581072,-!p1@TOX3!1.20!14.89!TOX3;;chr2:63277948..63277974,+!p1@OTX1!1.20!14.73!OTX1;;chr8:76319876..76319926,+!p1@HNF4G!1.18!14.26!HNF4G;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.71!KDM5D;;chr10:51572408..51572454,+!p3@NCOA4!1.15!75.95!NCOA4;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.15!13.08!SEBOX;;chr1:214161328..214161348,+!p2@PROX1!1.14!12.92!PROX1;;chr12:66218836..66218888,+!p1@HMGA2!1.13!116.44!HMGA2;;chr12:66218152..66218174,+!p10@HMGA2!1.13!13.39!HMGA2;;chr2:113977697..113977733,-!p6@PAX8!1.13!12.53!PAX8;;chr20:43030002..43030028,+!p3@HNF4A!1.07!10.71!HNF4A;;chr19:926001..926046,+!p1@ARID3A!1.05!36.00!ARID3A;;chr16:68118689..68118733,+!p3@NFATC3!1.05!26.16!NFATC3;;chr17:41623667..41623682,-!p8@ETV4!1.05!10.95!ETV4;;chr20:50159198..50159299,-!p1@NFATC2!1.03!14.18!NFATC2;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.97!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.02!9.45!HMGA2;;chr12:24103844..24103880,-!p3@SOX5!1.02!9.38!SOX5;;chr3:141150883..141150961,+!p6@ZBTB38!0.99!8.74!ZBTB38;;chr14:38064590..38064606,-!p2@FOXA1!0.97!8.43!FOXA1;;chr2:25475094..25475112,-!p3@DNMT3A!0.96!8.04!DNMT3A;;chr6:7108179..7108199,+!p4@RREB1!0.94!15.84!RREB1;;chr17:41622834..41622883,-!p6@ETV4!0.94!9.45!ETV4;;chr1:214161358..214161377,+!p3@PROX1!0.94!7.72!PROX1;;chr5:134369879..134369898,-!p2@PITX1!0.94!7.64!PITX1;;chrX:128657457..128657475,-!p1@SMARCA1!0.93!91.23!SMARCA1;;chr2:239148671..239148686,-!p1@HES6!0.93!28.52!HES6;;chr2:46524897..46524911,+!p2@EPAS1!0.93!21.43!EPAS1;;chr8:37963466..37963506,+!p3@ASH2L!0.93!9.45!ASH2L;;chr19:926055..926068,+!p2@ARID3A!0.92!16.39!ARID3A;;chr7:156803329..156803362,-!p1@MNX1!0.92!7.33!MNX1;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.28!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!0.91!30.80!E2F3;;chr16:54320101..54320125,-!p4@IRX3!0.91!10.32!IRX3;;chr18:55102598..55102623,+!p1@ONECUT2!0.91!7.09!ONECUT2;;chr12:121416340..121416360,+!p1@HNF1A!0.91!7.09!HNF1A;;chr12:7079780..7079791,-!p2@PHB2!0.90!37.66!PHB2;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.14!HHEX;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.90!10.24!TGIF2;;chr19:48773337..48773339,+!p2@ZNF114!0.90!7.01!ZNF114;;chr9:127533519..127533573,-!p2@NR6A1!0.89!8.27!NR6A1;;chr7:96635178..96635181,+!p1@DLX6!0.89!6.78!DLX6;;chr12:121416455..121416479,+!p2@HNF1A!0.89!6.70!HNF1A;;chr12:66358080..66358094,+!p15@HMGA2!0.89!6.70!HMGA2;;chr20:306177..306211,+!p2@SOX12!0.88!47.51!SOX12;;chr4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| |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.56!358.23!PEG3;;chr6:1312325..1312340,+!p1@FOXQ1!2.39!393.13!FOXQ1;;chr1:27240455..27240474,-!p1@NR0B2!2.18!148.74!NR0B2;;chr2:171571827..171571853,+!p1@SP5!2.09!121.64!SP5;;chrX:131624056..131624069,-!p2@MBNL3!1.99!129.83!MBNL3;;chr17:53342311..53342400,+!p1@HLF!1.97!105.25!HLF;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.93!83.43!SEBOX;;chr17:41622765..41622821,-!p2@ETV4!1.86!106.44!ETV4;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.16!PROX1;;chr17:53344945..53344977,+!p2@HLF!1.85!70.59!HLF;;chr20:43029862..43029900,+!p1@HNF4A!1.84!67.83!HNF4A;;chr7:73038839..73038862,-!p1@MLXIPL!1.83!66.10!MLXIPL;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.80!61.84!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!1.76!56.49!ETV4;;chr12:100867627..100867652,+!p1@NR1H4!1.74!53.65!NR1H4;;chr14:38064429..38064486,-!p1@FOXA1!1.71!49.87!FOXA1;;chr20:22564895..22564910,-!p1@FOXA2!1.62!40.26!FOXA2;;chr17:53344980..53345011,+!p3@HLF!1.58!36.71!HLF;;chrX:131547625..131547644,-!p4@MBNL3!1.55!34.19!MBNL3;;chr12:66218183..66218209,+!p4@HMGA2!1.54!63.34!HMGA2;;chr20:42984330..42984364,+!p2@HNF4A!1.52!32.38!HNF4A;;chr19:33793430..33793447,-!p1@CEBPA!1.50!123.93!CEBPA;;chr17:70117153..70117174,+!p1@SOX9!1.48!287.09!SOX9;;chr2:171572786..171572840,+!p2@SP5!1.48!29.23!SP5;;chr2:171571796..171571808,+!p4@SP5!1.48!28.91!SP5;;chr8:11561684..11561751,+!p1@GATA4!1.45!27.42!GATA4;;chr19:2867325..2867348,+!p1@ZNF556!1.43!25.92!ZNF556;;chr1:226411361..226411366,+!p1@MIXL1!1.42!25.53!MIXL1;;chr12:66218255..66218304,+!p3@HMGA2!1.40!63.66!HMGA2;;chr10:94449703..94449718,+!p1@HHEX!1.39!88.08!HHEX;;chr17:41623692..41623715,-!p1@ETV4!1.37!93.52!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.38!HMGA2;;chr15:53082521..53082549,-!p1@ONECUT1!1.35!21.51!ONECUT1;;chr2:177053386..177053402,+!p1@HOXD1!1.34!20.72!HOXD1;;chr12:100867653..100867677,+!p2@NR1H4!1.33!20.40!NR1H4;;chr20:62680984..62680999,-!p1@SOX18!1.31!25.68!SOX18;;chr11:61520075..61520136,+!p1@C11orf9!1.30!40.02!C11orf9;;chr12:66218003..66218018,+!p9@HMGA2!1.30!23.00!HMGA2;;chr2:171571931..171571959,+!p3@SP5!1.30!19.07!SP5;;chr12:24102576..24102623,-!p2@SOX5!1.27!17.65!SOX5;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.31!PITX1;;chr9:127269661..127269719,-!p1@NR5A1!1.25!16.86!NR5A1;;chr12:66218598..66218645,+!p2@HMGA2!1.24!73.98!HMGA2;;chr19:46367576..46367592,+!p1@FOXA3!1.23!16.15!FOXA3;;chrX:131547596..131547609,-!p10@MBNL3!1.23!16.07!MBNL3;;chr17:41622925..41622976,-!p3@ETV4!1.21!22.45!ETV4;;chr2:25475120..25475176,-!p2@DNMT3A!1.21!20.33!DNMT3A;;chr16:52581025..52581072,-!p1@TOX3!1.20!14.89!TOX3;;chr2:63277948..63277974,+!p1@OTX1!1.20!14.73!OTX1;;chr8:76319876..76319926,+!p1@HNF4G!1.18!14.26!HNF4G;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.71!KDM5D;;chr10:51572408..51572454,+!p3@NCOA4!1.15!75.95!NCOA4;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.15!13.08!SEBOX;;chr1:214161328..214161348,+!p2@PROX1!1.14!12.92!PROX1;;chr12:66218836..66218888,+!p1@HMGA2!1.13!116.44!HMGA2;;chr12:66218152..66218174,+!p10@HMGA2!1.13!13.39!HMGA2;;chr2:113977697..113977733,-!p6@PAX8!1.13!12.53!PAX8;;chr20:43030002..43030028,+!p3@HNF4A!1.07!10.71!HNF4A;;chr19:926001..926046,+!p1@ARID3A!1.05!36.00!ARID3A;;chr16:68118689..68118733,+!p3@NFATC3!1.05!26.16!NFATC3;;chr17:41623667..41623682,-!p8@ETV4!1.05!10.95!ETV4;;chr20:50159198..50159299,-!p1@NFATC2!1.03!14.18!NFATC2;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.97!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.02!9.45!HMGA2;;chr12:24103844..24103880,-!p3@SOX5!1.02!9.38!SOX5;;chr3:141150883..141150961,+!p6@ZBTB38!0.99!8.74!ZBTB38;;chr14:38064590..38064606,-!p2@FOXA1!0.97!8.43!FOXA1;;chr2:25475094..25475112,-!p3@DNMT3A!0.96!8.04!DNMT3A;;chr6:7108179..7108199,+!p4@RREB1!0.94!15.84!RREB1;;chr17:41622834..41622883,-!p6@ETV4!0.94!9.45!ETV4;;chr1:214161358..214161377,+!p3@PROX1!0.94!7.72!PROX1;;chr5:134369879..134369898,-!p2@PITX1!0.94!7.64!PITX1;;chrX:128657457..128657475,-!p1@SMARCA1!0.93!91.23!SMARCA1;;chr2:239148671..239148686,-!p1@HES6!0.93!28.52!HES6;;chr2:46524897..46524911,+!p2@EPAS1!0.93!21.43!EPAS1;;chr8:37963466..37963506,+!p3@ASH2L!0.93!9.45!ASH2L;;chr19:926055..926068,+!p2@ARID3A!0.92!16.39!ARID3A;;chr7:156803329..156803362,-!p1@MNX1!0.92!7.33!MNX1;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.28!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!0.91!30.80!E2F3;;chr16:54320101..54320125,-!p4@IRX3!0.91!10.32!IRX3;;chr18:55102598..55102623,+!p1@ONECUT2!0.91!7.09!ONECUT2;;chr12:121416340..121416360,+!p1@HNF1A!0.91!7.09!HNF1A;;chr12:7079780..7079791,-!p2@PHB2!0.90!37.66!PHB2;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.14!HHEX;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.90!10.24!TGIF2;;chr19:48773337..48773339,+!p2@ZNF114!0.90!7.01!ZNF114;;chr9:127533519..127533573,-!p2@NR6A1!0.89!8.27!NR6A1;;chr7:96635178..96635181,+!p1@DLX6!0.89!6.78!DLX6;;chr12:121416455..121416479,+!p2@HNF1A!0.89!6.70!HNF1A;;chr12:66358080..66358094,+!p15@HMGA2!0.89!6.70!HMGA2;;chr20:306177..306211,+!p2@SOX12!0.88!47.51!SOX12;;chr4:4291837..4291859,-!p2@LYAR!0.86!21.43!LYAR;;chr10:97889464..97889494,+!p3@ZNF518A!0.86!12.29!ZNF518A;;chrX:131623982..131624011,-!p6@MBNL3!0.86!9.22!MBNL3;;chr20:22566120..22566136,-!p4@FOXA2!0.86!6.22!FOXA2;;chrX:131623026..131623039,-!p5@MBNL3!0.85!6.15!MBNL3;;chr2:180427304..180427323,-!p7@ZNF385B!0.85!6.15!ZNF385B;;chr12:66218573..66218596,+!p7@HMGA2!0.84!8.98!HMGA2;;chr2:171571909..171571920,+!p9@SP5!0.84!5.99!SP5;;chr2:171572699..171572713,+!p7@SP5!0.84!5.99!SP5;;chr1:201979743..201979762,+!p1@ELF3!0.84!5.91!ELF3;;chr20:42295745..42295765,+!p1@MYBL2!0.83!100.53!MYBL2;;chr15:76629123..76629151,+!p1@ISL2!0.83!6.54!ISL2;;chr6:41514078..41514158,+!p1@FOXP4!0.82!54.36!FOXP4;;chr12:3068544..3068597,+!p1@TEAD4!0.82!36.56!TEAD4;;chr16:54320675..54320715,-!p1@IRX3!0.82!12.68!IRX3;;chr10:70320074..70320106,+!p1@TET1!0.82!11.90!TET1;;chr12:100867736..100867750,+!p4@NR1H4!0.82!5.59!NR1H4;;chr7:73038867..73038878,-!p2@MLXIPL!0.82!5.59!MLXIPL;;chr3:141151009..141151033,+!p10@ZBTB38!0.82!5.59!ZBTB38;;chr17:41623634..41623645,-!p15@ETV4!0.82!5.59!ETV4;;chr6:155635583..155635644,-!p1@TFB1M!0.81!75.63!TFB1M;;chr5:133450365..133450444,+!p1@TCF7!0.81!26.87!TCF7;;chr17:41277372..41277418,-!p1@BRCA1!0.81!21.04!BRCA1;;chr8:71316428..71316459,-!p2@NCOA2!0.81!9.53!NCOA2;;chr7:96634878..96634900,+!p2@DLX6!0.80!5.36!DLX6;;chr16:51185318..51185348,-!p2@SALL1!0.80!5.36!SALL1;;chr12:3068668..3068689,+!p7@TEAD4!0.80!5.36!TEAD4;;chr20:22565370..22565388,-!p2@FOXA2!0.80!5.36!FOXA2;;chrX:131624020..131624048,-!p9@MBNL3!0.79!6.30!MBNL3;;chr7:101917407..101917443,+!p3@CUX1!0.79!5.12!CUX1;;chr16:52580953..52580992,-!p2@TOX3!0.79!5.12!TOX3;;chr18:6414884..6414942,-!p1@L3MBTL4!0.78!6.46!L3MBTL4;;chr17:53342451..53342471,+!p4@HLF!0.78!5.04!HLF;;chr6:1312155..1312187,+!p2@FOXQ1!0.78!4.96!FOXQ1;;chr20:32274179..32274213,-!p1@E2F1!0.77!35.77!E2F1;;chr2:171572525..171572547,+!p6@SP5!0.77!4.88!SP5;;chr3:128207349..128207386,-!p3@GATA2!0.77!4.88!GATA2;;chr1:23857698..23857733,-!p1@E2F2!0.76!9.22!E2F2;;chr9:127533582..127533615,-!p1@NR6A1!0.76!7.41!NR6A1;;chr7:96634850..96634874,+!p3@DLX6!0.76!4.81!DLX6;;chr17:40180680..40180726,-!p1@ZNF385C!0.76!4.73!ZNF385C;;chr19:4153613..4153652,+!p1@CREB3L3!0.76!4.73!CREB3L3;;chr2:171572483..171572501,+!p5@SP5!0.76!4.73!SP5;;chr20:30193083..30193098,+!p1@ID1!0.75!419.84!ID1;;chr20:306489..306564,+!p1@SOX12!0.75!56.09!SOX12;;chr2:10091815..10091864,+!p1@GRHL1!0.75!6.38!GRHL1;;chr12:66218443..66218461,+!p8@HMGA2!0.75!6.07!HMGA2;;chr11:19263160..19263176,-!p1@E2F8!0.75!5.59!E2F8;;chr18:55102628..55102646,+!p2@ONECUT2!0.75!4.65!ONECUT2;;chr2:42721205..42721307,+!p4@MTA3!0.75!4.65!MTA3;;chr2:63277978..63277995,+!p2@OTX1!0.75!4.65!OTX1;;chr2:178129619..178129633,-!p16@NFE2L2!0.75!4.57!NFE2L2;;chr2:180427261..180427297,-!p6@ZNF385B!0.75!4.57!ZNF385B;;chr10:51565239..51565263,+!p2@NCOA4!0.74!117.78!NCOA4;;chr5:76383133..76383186,-!p2@ZBED3!0.74!9.85!ZBED3;;chr3:24536253..24536328,-!p1@THRB!0.74!9.14!THRB;;chr3:40547564..40547616,+!p1@ZNF620!0.74!6.54!ZNF620;;chr1:61547894..61547968,+!p2@NFIA!0.73!13.87!NFIA;;chr19:12444440..12444455,-!p1@ZNF563!0.73!8.11!ZNF563;;chr1:92952473..92952489,-!p3@GFI1!0.73!4.33!GFI1;;chr16:54320646..54320672,-!p2@IRX3!0.72!6.85!IRX3;;chr16:54320158..54320200,-!p5@IRX3!0.72!6.46!IRX3;;chr3:71355163..71355209,-!p5@FOXP1!0.72!6.22!FOXP1;;chr20:43029970..43029990,+!p4@HNF4A!0.72!4.25!HNF4A;;chr19:12163769..12163798,-!p1@ZNF878!0.71!5.51!ZNF878;;chr5:172662197..172662216,-!p1@NKX2-5!0.71!4.18!NKX2-5;;chr12:100867777..100867788,+!p5@NR1H4!0.71!4.18!NR1H4;;chr2:178129680..178129691,-!p35@NFE2L2!0.71!4.18!NFE2L2;;chr12:66218420..66218439,+!p12@HMGA2!0.71!4.10!HMGA2;;chr17:36105042..36105060,-!p1@HNF1B!0.70!4.02!HNF1B;;chr2:171572729..171572745,+!p10@SP5!0.70!4.02!SP5;;chr3:119500941..119500961,+!p1@NR1I2!0.70!4.02!NR1I2;;chr1:201979703..201979721,+!p2@ELF3!0.70!4.02!ELF3;;chr2:75937794..75937867,-!p2@GCFC2!0.69!9.45!GCFC2;;chr2:70314240..70314256,+!p4@PCBP1!0.69!8.67!PCBP1;;chr17:47492203..47492214,-!p3@PHB!0.69!6.46!PHB;;chr1:247171316..247171336,-!p3@ZNF695!0.69!6.07!ZNF695;;chr15:85144307..85144329,+!p2@ZSCAN2!0.69!4.57!ZSCAN2;;chr19:12512015..12512044,-!p2@ZNF799!0.68!5.91!ZNF799;;chr17:41622982..41623001,-!p11@ETV4!0.68!3.78!ETV4;;chr12:3068634..3068656,+!p5@TEAD4!0.68!3.78!TEAD4;;chrX:128657413..128657456,-!p2@SMARCA1!0.67!36.95!SMARCA1;;chr12:2986206..2986258,-!p2@FOXM1!0.67!25.13!FOXM1;;chr4:4861385..4861398,+!p1@MSX1!0.67!12.13!MSX1;;chr8:123793988..123794016,+!p1@ZHX2!0.67!7.09!ZHX2;;chr7:97840743..97840786,+!p1@BHLHA15!0.67!3.70!BHLHA15;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.70!ZFY;;chr11:19262421..19262455,-!p3@E2F8!0.67!3.70!E2F8;;chr7:101917447..101917479,+!p4@CUX1!0.67!3.62!CUX1;;chr22:22874610..22874616,-!p1@ZNF280A!0.67!3.62!ZNF280A;;chr17:41623259..41623278,-!p7@ETV4!0.66!4.33!ETV4;;chr22:29196547..29196563,-!p2@XBP1!0.65!149.85!XBP1;;chr5:92918919..92918942,+!p1@NR2F1!0.65!17.73!NR2F1;;chr1:45805872..45805900,+!p2@TOE1!0.65!9.22!TOE1;;chr19:925727..925784,+!p3@ARID3A!0.65!8.11!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| ||
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316 | |||
|fonse_cell_line=FF:0100224,FF:0101120 | |fonse_cell_line=FF:0100224,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100224,FF:0101120 | |fonse_cell_line_closure=FF:0100224,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10818-111B8 | |id=FF:10818-111B8 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100599 | |is_a=EFO:0002091;;FF:0000210;;FF:0100599 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12328 | |||
|library_id_phase_based=2:CNhs12328 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10818 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10818 | |||
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1 | |name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12328,LSID913,release011,COMPLETED | |profile_hcage=CNhs12328,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0967721310792126,0,-0.106719278609318,0.351757982409057,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0611817363290387,0,0,0,0,0,0.191050610687238,0,0,0.138098162942085,0,0,0,0,0,0,0,0,0,0,0.0921412740193889,0,-0.0927110613661103,0.212258326954079,0,0,0,0,0,0,0,0.120021554473153,0,0,0,0,0,0,0.0635458990071735,0.429798485761943,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.0329341673988529,0,0,0,0,0,0,0,0,0,0.179430419122328,0,0,0,0,0.0144514081822198,0.131322167521922,0,0,0,0.278937991267287,-0.194730318996442,0.0460706370096945,0,0,0,0.0462012243482806,0.220628919779333,0,0,0,0.0329341673988529,0,0,0.0635458990071735,0,0,0,0.507351624760996,0,0,0,0,0,0,0.0709267319415992,0.436676180613302,0,0,-0.0155664369838105,-0.178847097096071,0,0,0.118969586029405,0,0.0164670836994265,0 | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=47.0895 | |rna_weight_ug=47.0895 | ||
|sample_age=15 | |sample_age=15 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=HepG2 | |sample_cell_line=HepG2 | ||
| Line 74: | Line 95: | ||
|sample_note= | |sample_note= | ||
|sample_sex=male | |sample_sex=male | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=HNF4A_NR2F1,2:4.6336281934;HNF1A:3.99717269921;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.60930536053;FOXA2:3.33927933333;LEF1_TCF7_TCF7L1,2:2.15397537322;bHLH_family:2.12741821655;FOX{F1,F2,J1}:1.80206720245;NFY{A,B,C}:1.67298401765;ONECUT1,2:1.53306514262;E2F1..5:1.47218935472;NR6A1:1.41105575924;ELK1,4_GABP{A,B1}:1.22812324132;ADNP_IRX_SIX_ZHX:1.22622287794;ZNF143:1.21370728208;YY1:1.19944744554;NR1H4:1.12160458658;PBX1:1.09634034476;SOX{8,9,10}:1.00298395579;GFI1:0.922058059351;PAX3,7:0.902921312315;EN1,2:0.901876383469;SNAI1..3:0.87566846701;NRF1:0.859955649586;NR5A1,2:0.828385734518;RORA:0.810472286197;AIRE:0.783046346075;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.7259271211;NKX3-2:0.673379995048;MYB:0.672073145583;ZEB1:0.659359050625;FOXM1:0.562649799346;SOX2:0.547227504721;CEBPA,B_DDIT3:0.52604824284;TFDP1:0.488342553285;ESRRA:0.454063815212;LHX3,4:0.436469281847;FOX{D1,D2}:0.402919953036;AR:0.388461214754;TP53:0.368832507105;POU6F1:0.338689630283;EBF1:0.307678860475;ALX4:0.303356254065;XCPE1{core}:0.297641052304;FOXD3:0.296436459775;TOPORS:0.287623212965;MYOD1:0.286324937579;PITX1..3:0.277354300827;HIC1:0.272534599514;RXRA_VDR{dimer}:0.272479340097;PPARG:0.264385959956;NFIL3:0.252935182129;HLF:0.243785436409;PAX4:0.202287790417;CUX2:0.175411786385;ZFP161:0.105377995485;MTE{core}:0.0955578009168;UFEwm:0.0862451185798;ELF1,2,4:0.083898217054;BREu{core}:0.0827288776191;SP1:0.0764001649076;T:0.0567543349752;DBP:0.0507037044456;GATA6:0.0358617307176;FOXP1:0.02042952028;NKX3-1:-0.0091455844359;PAX1,9:-0.0244231561868;STAT5{A,B}:-0.0254456577132;RXR{A,B,G}:-0.0527394006977;SOX5:-0.0591386476518;MAZ:-0.0618925932423;HOX{A6,A7,B6,B7}:-0.0630616025849;HOXA9_MEIS1:-0.0808632429101;PAX2:-0.0813891995176;FOXQ1:-0.0863150778232;VSX1,2:-0.0867928497714;TFAP2{A,C}:-0.088404735657;SREBF1,2:-0.100780591823;SOX17:-0.113059214839;CDC5L:-0.119628746783;TBX4,5:-0.137838726667;STAT2,4,6:-0.150788072923;TFCP2:-0.168986524537;ARID5B:-0.169765936193;NFKB1_REL_RELA:-0.179256503135;EVI1:-0.181421948364;KLF4:-0.199461110483;HOX{A5,B5}:-0.231126104355;POU3F1..4:-0.231380848457;PATZ1:-0.235080086706;IKZF2:-0.249566713957;RBPJ:-0.251541126389;MTF1:-0.257721985754;TEAD1:-0.265014278276;PAX8:-0.274785039974;GLI1..3:-0.289152488983;LMO2:-0.291892020951;AHR_ARNT_ARNT2:-0.29329109175;TAL1_TCF{3,4,12}:-0.296079428629;OCT4_SOX2{dimer}:-0.300254852144;MED-1{core}:-0.304332159387;HES1:-0.307012617688;ATF5_CREB3:-0.334769975363;ESR1:-0.340029799811;ALX1:-0.359474450378;ZNF423:-0.369557480886;TLX1..3_NFIC{dimer}:-0.374985232375;NFE2:-0.380027598146;ATF6:-0.380262361062;HMGA1,2:-0.386767557068;NKX2-3_NKX2-5:-0.389337039091;BPTF:-0.389647665459;FOXO1,3,4:-0.396370466887;FOSL2:-0.396973575047;FOXN1:-0.415294191135;IRF7:-0.448223816162;HOX{A4,D4}:-0.45066667056;PDX1:-0.451787256182;ZNF148:-0.456217717467;STAT1,3:-0.459254490781;DMAP1_NCOR{1,2}_SMARC:-0.460719613092;FOXP3:-0.480720551971;REST:-0.495102245442;NFIX:-0.495141346024;POU2F1..3:-0.504319834073;NKX6-1,2:-0.513621985632;CREB1:-0.536924423225;GTF2A1,2:-0.552714762347;POU5F1:-0.556391852954;RFX2..5_RFXANK_RFXAP:-0.556599876882;FOS_FOS{B,L1}_JUN{B,D}:-0.569258452363;NFE2L2:-0.572069391369;NR3C1:-0.576684824434;IRF1,2:-0.586548740652;BACH2:-0.602430716358;EGR1..3:-0.604632244846;GATA4:-0.612778289875;IKZF1:-0.629078627408;TBP:-0.630279575528;ZBTB16:-0.657023167473;ATF2:-0.664382555617;PAX5:-0.671009802437;NANOG{mouse}:-0.672935505211;TFAP2B:-0.67642168335;SPIB:-0.680899141763;XBP1:-0.686242024725;RREB1:-0.688815481404;SPI1:-0.698228639668;CDX1,2,4:-0.709918155467;ATF4:-0.715802125117;MYBL2:-0.775715607337;MEF2{A,B,C,D}:-0.780468707287;NHLH1,2:-0.784899818125;SRF:-0.824322749622;HAND1,2:-0.846714368056;JUN:-0.86010430025;RUNX1..3:-0.863473292534;GTF2I:-0.86668683575;RFX1:-0.908163007912;GCM1,2:-0.917002267437;NKX2-2,8:-0.919300342945;HSF1,2:-0.96632803329;TFAP4:-0.98925164156;CRX:-1.00233198688;ZIC1..3:-1.01473277458;POU1F1:-1.03152041126;MYFfamily:-1.03366152559;ZBTB6:-1.04522230986;ETS1,2:-1.05258606165;PRDM1:-1.07715176868;MAFB:-1.08155965378;GFI1B:-1.1136452616;PAX6:-1.11478530939;NFE2L1:-1.11747408716;NKX2-1,4:-1.11937821277;ZNF384:-1.13048107978;EP300:-1.22663243284;SPZ1:-1.24007400003;FOX{I1,J2}:-1.2543459242;PRRX1,2:-1.25451630451;MZF1:-1.25575545947;TEF:-1.27780133315;NFATC1..3:-1.30437750482;NANOG:-1.38164792331;TGIF1:-1.39220943109;FOXL1:-1.52930909718;ZNF238:-1.62360021352;HBP1_HMGB_SSRP1_UBTF:-1.63393470762;GZF1:-1.6454587951;TLX2:-1.73277421616;HIF1A:-1.89638195561;HMX1:-1.9038884297;SMAD1..7,9:-2.02116633165 | |top_motifs=HNF4A_NR2F1,2:4.6336281934;HNF1A:3.99717269921;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.60930536053;FOXA2:3.33927933333;LEF1_TCF7_TCF7L1,2:2.15397537322;bHLH_family:2.12741821655;FOX{F1,F2,J1}:1.80206720245;NFY{A,B,C}:1.67298401765;ONECUT1,2:1.53306514262;E2F1..5:1.47218935472;NR6A1:1.41105575924;ELK1,4_GABP{A,B1}:1.22812324132;ADNP_IRX_SIX_ZHX:1.22622287794;ZNF143:1.21370728208;YY1:1.19944744554;NR1H4:1.12160458658;PBX1:1.09634034476;SOX{8,9,10}:1.00298395579;GFI1:0.922058059351;PAX3,7:0.902921312315;EN1,2:0.901876383469;SNAI1..3:0.87566846701;NRF1:0.859955649586;NR5A1,2:0.828385734518;RORA:0.810472286197;AIRE:0.783046346075;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.7259271211;NKX3-2:0.673379995048;MYB:0.672073145583;ZEB1:0.659359050625;FOXM1:0.562649799346;SOX2:0.547227504721;CEBPA,B_DDIT3:0.52604824284;TFDP1:0.488342553285;ESRRA:0.454063815212;LHX3,4:0.436469281847;FOX{D1,D2}:0.402919953036;AR:0.388461214754;TP53:0.368832507105;POU6F1:0.338689630283;EBF1:0.307678860475;ALX4:0.303356254065;XCPE1{core}:0.297641052304;FOXD3:0.296436459775;TOPORS:0.287623212965;MYOD1:0.286324937579;PITX1..3:0.277354300827;HIC1:0.272534599514;RXRA_VDR{dimer}:0.272479340097;PPARG:0.264385959956;NFIL3:0.252935182129;HLF:0.243785436409;PAX4:0.202287790417;CUX2:0.175411786385;ZFP161:0.105377995485;MTE{core}:0.0955578009168;UFEwm:0.0862451185798;ELF1,2,4:0.083898217054;BREu{core}:0.0827288776191;SP1:0.0764001649076;T:0.0567543349752;DBP:0.0507037044456;GATA6:0.0358617307176;FOXP1:0.02042952028;NKX3-1:-0.0091455844359;PAX1,9:-0.0244231561868;STAT5{A,B}:-0.0254456577132;RXR{A,B,G}:-0.0527394006977;SOX5:-0.0591386476518;MAZ:-0.0618925932423;HOX{A6,A7,B6,B7}:-0.0630616025849;HOXA9_MEIS1:-0.0808632429101;PAX2:-0.0813891995176;FOXQ1:-0.0863150778232;VSX1,2:-0.0867928497714;TFAP2{A,C}:-0.088404735657;SREBF1,2:-0.100780591823;SOX17:-0.113059214839;CDC5L:-0.119628746783;TBX4,5:-0.137838726667;STAT2,4,6:-0.150788072923;TFCP2:-0.168986524537;ARID5B:-0.169765936193;NFKB1_REL_RELA:-0.179256503135;EVI1:-0.181421948364;KLF4:-0.199461110483;HOX{A5,B5}:-0.231126104355;POU3F1..4:-0.231380848457;PATZ1:-0.235080086706;IKZF2:-0.249566713957;RBPJ:-0.251541126389;MTF1:-0.257721985754;TEAD1:-0.265014278276;PAX8:-0.274785039974;GLI1..3:-0.289152488983;LMO2:-0.291892020951;AHR_ARNT_ARNT2:-0.29329109175;TAL1_TCF{3,4,12}:-0.296079428629;OCT4_SOX2{dimer}:-0.300254852144;MED-1{core}:-0.304332159387;HES1:-0.307012617688;ATF5_CREB3:-0.334769975363;ESR1:-0.340029799811;ALX1:-0.359474450378;ZNF423:-0.369557480886;TLX1..3_NFIC{dimer}:-0.374985232375;NFE2:-0.380027598146;ATF6:-0.380262361062;HMGA1,2:-0.386767557068;NKX2-3_NKX2-5:-0.389337039091;BPTF:-0.389647665459;FOXO1,3,4:-0.396370466887;FOSL2:-0.396973575047;FOXN1:-0.415294191135;IRF7:-0.448223816162;HOX{A4,D4}:-0.45066667056;PDX1:-0.451787256182;ZNF148:-0.456217717467;STAT1,3:-0.459254490781;DMAP1_NCOR{1,2}_SMARC:-0.460719613092;FOXP3:-0.480720551971;REST:-0.495102245442;NFIX:-0.495141346024;POU2F1..3:-0.504319834073;NKX6-1,2:-0.513621985632;CREB1:-0.536924423225;GTF2A1,2:-0.552714762347;POU5F1:-0.556391852954;RFX2..5_RFXANK_RFXAP:-0.556599876882;FOS_FOS{B,L1}_JUN{B,D}:-0.569258452363;NFE2L2:-0.572069391369;NR3C1:-0.576684824434;IRF1,2:-0.586548740652;BACH2:-0.602430716358;EGR1..3:-0.604632244846;GATA4:-0.612778289875;IKZF1:-0.629078627408;TBP:-0.630279575528;ZBTB16:-0.657023167473;ATF2:-0.664382555617;PAX5:-0.671009802437;NANOG{mouse}:-0.672935505211;TFAP2B:-0.67642168335;SPIB:-0.680899141763;XBP1:-0.686242024725;RREB1:-0.688815481404;SPI1:-0.698228639668;CDX1,2,4:-0.709918155467;ATF4:-0.715802125117;MYBL2:-0.775715607337;MEF2{A,B,C,D}:-0.780468707287;NHLH1,2:-0.784899818125;SRF:-0.824322749622;HAND1,2:-0.846714368056;JUN:-0.86010430025;RUNX1..3:-0.863473292534;GTF2I:-0.86668683575;RFX1:-0.908163007912;GCM1,2:-0.917002267437;NKX2-2,8:-0.919300342945;HSF1,2:-0.96632803329;TFAP4:-0.98925164156;CRX:-1.00233198688;ZIC1..3:-1.01473277458;POU1F1:-1.03152041126;MYFfamily:-1.03366152559;ZBTB6:-1.04522230986;ETS1,2:-1.05258606165;PRDM1:-1.07715176868;MAFB:-1.08155965378;GFI1B:-1.1136452616;PAX6:-1.11478530939;NFE2L1:-1.11747408716;NKX2-1,4:-1.11937821277;ZNF384:-1.13048107978;EP300:-1.22663243284;SPZ1:-1.24007400003;FOX{I1,J2}:-1.2543459242;PRRX1,2:-1.25451630451;MZF1:-1.25575545947;TEF:-1.27780133315;NFATC1..3:-1.30437750482;NANOG:-1.38164792331;TGIF1:-1.39220943109;FOXL1:-1.52930909718;ZNF238:-1.62360021352;HBP1_HMGB_SSRP1_UBTF:-1.63393470762;GZF1:-1.6454587951;TLX2:-1.73277421616;HIF1A:-1.89638195561;HMX1:-1.9038884297;SMAD1..7,9:-2.02116633165 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10818-111B8;search_select_hide=table117:FF:10818-111B8 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12328 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12328
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12328
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.438 |
| 10 | 10 | 0.553 |
| 100 | 100 | 0.0352 |
| 101 | 101 | 0.326 |
| 102 | 102 | 0.161 |
| 103 | 103 | 0.767 |
| 104 | 104 | 0.695 |
| 105 | 105 | 0.937 |
| 106 | 106 | 0.0139 |
| 107 | 107 | 0.576 |
| 108 | 108 | 0.427 |
| 109 | 109 | 0.0825 |
| 11 | 11 | 0.752 |
| 110 | 110 | 0.919 |
| 111 | 111 | 0.698 |
| 112 | 112 | 0.172 |
| 113 | 113 | 0.0935 |
| 114 | 114 | 0.368 |
| 115 | 115 | 0.642 |
| 116 | 116 | 0.883 |
| 117 | 117 | 0.124 |
| 118 | 118 | 0.347 |
| 119 | 119 | 0.89 |
| 12 | 12 | 0.603 |
| 120 | 120 | 0.382 |
| 121 | 121 | 0.58 |
| 122 | 122 | 0.867 |
| 123 | 123 | 0.394 |
| 124 | 124 | 0.174 |
| 125 | 125 | 0.483 |
| 126 | 126 | 0.581 |
| 127 | 127 | 0.34 |
| 128 | 128 | 0.0128 |
| 129 | 129 | 0.785 |
| 13 | 13 | 1.06797e-4 |
| 130 | 130 | 0.813 |
| 131 | 131 | 0.0261 |
| 132 | 132 | 0.571 |
| 133 | 133 | 0.00841 |
| 134 | 134 | 0.402 |
| 135 | 135 | 0.0394 |
| 136 | 136 | 0.0132 |
| 137 | 137 | 0.00231 |
| 138 | 138 | 0.379 |
| 139 | 139 | 0.227 |
| 14 | 14 | 0.0662 |
| 140 | 140 | 0.7 |
| 141 | 141 | 0.222 |
| 142 | 142 | 0.748 |
| 143 | 143 | 0.129 |
| 144 | 144 | 0.437 |
| 145 | 145 | 0.645 |
| 146 | 146 | 0.904 |
| 147 | 147 | 0.575 |
| 148 | 148 | 0.893 |
| 149 | 149 | 0.784 |
| 15 | 15 | 0.933 |
| 150 | 150 | 0.53 |
| 151 | 151 | 0.727 |
| 152 | 152 | 0.996 |
| 153 | 153 | 0.344 |
| 154 | 154 | 0.138 |
| 155 | 155 | 0.279 |
| 156 | 156 | 0.884 |
| 157 | 157 | 0.485 |
| 158 | 158 | 0.991 |
| 159 | 159 | 0.678 |
| 16 | 16 | 0.716 |
| 160 | 160 | 0.752 |
| 161 | 161 | 0.929 |
| 162 | 162 | 0.801 |
| 163 | 163 | 0.704 |
| 164 | 164 | 0.999 |
| 165 | 165 | 0.724 |
| 166 | 166 | 0.352 |
| 167 | 167 | 0.989 |
| 168 | 168 | 0.231 |
| 169 | 169 | 0.287 |
| 17 | 17 | 0.705 |
| 18 | 18 | 0.0495 |
| 19 | 19 | 0.808 |
| 2 | 2 | 0.086 |
| 20 | 20 | 0.17 |
| 21 | 21 | 0.406 |
| 22 | 22 | 0.544 |
| 23 | 23 | 0.00327 |
| 24 | 24 | 0.855 |
| 25 | 25 | 0.613 |
| 26 | 26 | 0.0565 |
| 27 | 27 | 0.22 |
| 28 | 28 | 0.955 |
| 29 | 29 | 0.214 |
| 3 | 3 | 0.996 |
| 30 | 30 | 0.676 |
| 31 | 31 | 0.787 |
| 32 | 32 | 0.246 |
| 33 | 33 | 0.295 |
| 34 | 34 | 0.439 |
| 35 | 35 | 0.891 |
| 36 | 36 | 0.153 |
| 37 | 37 | 0.77 |
| 38 | 38 | 0.871 |
| 39 | 39 | 0.879 |
| 4 | 4 | 0.912 |
| 40 | 40 | 0.00695 |
| 41 | 41 | 0.063 |
| 42 | 42 | 0.348 |
| 43 | 43 | 0.864 |
| 44 | 44 | 0.14 |
| 45 | 45 | 0.981 |
| 46 | 46 | 0.674 |
| 47 | 47 | 0.292 |
| 48 | 48 | 0.545 |
| 49 | 49 | 0.869 |
| 5 | 5 | 0.41 |
| 50 | 50 | 0.203 |
| 51 | 51 | 0.711 |
| 52 | 52 | 0.394 |
| 53 | 53 | 0.337 |
| 54 | 54 | 0.809 |
| 55 | 55 | 0.276 |
| 56 | 56 | 0.847 |
| 57 | 57 | 0.982 |
| 58 | 58 | 0.598 |
| 59 | 59 | 0.491 |
| 6 | 6 | 0.313 |
| 60 | 60 | 0.292 |
| 61 | 61 | 0.112 |
| 62 | 62 | 0.225 |
| 63 | 63 | 0.959 |
| 64 | 64 | 0.855 |
| 65 | 65 | 0.055 |
| 66 | 66 | 0.00947 |
| 67 | 67 | 0.341 |
| 68 | 68 | 0.19 |
| 69 | 69 | 0.436 |
| 7 | 7 | 0.0472 |
| 70 | 70 | 0.134 |
| 71 | 71 | 0.484 |
| 72 | 72 | 0.138 |
| 73 | 73 | 0.139 |
| 74 | 74 | 0.103 |
| 75 | 75 | 0.00138 |
| 76 | 76 | 0.653 |
| 77 | 77 | 0.964 |
| 78 | 78 | 0.0187 |
| 79 | 79 | 0.0186 |
| 8 | 8 | 0.792 |
| 80 | 80 | 0.0473 |
| 81 | 81 | 0.167 |
| 82 | 82 | 0.0837 |
| 83 | 83 | 0.113 |
| 84 | 84 | 0.143 |
| 85 | 85 | 0.0437 |
| 86 | 86 | 0.798 |
| 87 | 87 | 0.0638 |
| 88 | 88 | 0.444 |
| 89 | 89 | 0.404 |
| 9 | 9 | 0.0648 |
| 90 | 90 | 0.593 |
| 91 | 91 | 0.0146 |
| 92 | 92 | 0.0753 |
| 93 | 93 | 0.774 |
| 94 | 94 | 0.0751 |
| 95 | 95 | 0.00291 |
| 96 | 96 | 0.329 |
| 97 | 97 | 0.687 |
| 98 | 98 | 0.877 |
| 99 | 99 | 0.224 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12328
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100599 Hep-G2 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0100599 (Hep-G2 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
