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{{f5samples
{{f5samples
|id=FF:10818-111B8
|DRA_sample_Accession=CAGE@SAMD00004811
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1
|accession_numbers=CAGE;DRX007905;DRR008777;DRZ000202;DRZ001587;DRZ011552;DRZ012937
|sample_id=10818
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|rna_tube_id=111B8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|rna_box=111
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|rna_position=B8
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0100599
|sample_cell_lot=
|comment=
|sample_cell_catalog=
|created_by=
|sample_company=
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=
|def=
|sample_strain=
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.56!358.23!PEG3;;chr6:1312325..1312340,+!p1@FOXQ1!2.39!393.13!FOXQ1;;chr1:27240455..27240474,-!p1@NR0B2!2.18!148.74!NR0B2;;chr2:171571827..171571853,+!p1@SP5!2.09!121.64!SP5;;chrX:131624056..131624069,-!p2@MBNL3!1.99!129.83!MBNL3;;chr17:53342311..53342400,+!p1@HLF!1.97!105.25!HLF;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.93!83.43!SEBOX;;chr17:41622765..41622821,-!p2@ETV4!1.86!106.44!ETV4;;chr1:214161272..214161322,+!p1@PROX1!1.86!98.16!PROX1;;chr17:53344945..53344977,+!p2@HLF!1.85!70.59!HLF;;chr20:43029862..43029900,+!p1@HNF4A!1.84!67.83!HNF4A;;chr7:73038839..73038862,-!p1@MLXIPL!1.83!66.10!MLXIPL;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.80!61.84!SEBOX;;chr17:41622731..41622764,-!p5@ETV4!1.76!56.49!ETV4;;chr12:100867627..100867652,+!p1@NR1H4!1.74!53.65!NR1H4;;chr14:38064429..38064486,-!p1@FOXA1!1.71!49.87!FOXA1;;chr20:22564895..22564910,-!p1@FOXA2!1.62!40.26!FOXA2;;chr17:53344980..53345011,+!p3@HLF!1.58!36.71!HLF;;chrX:131547625..131547644,-!p4@MBNL3!1.55!34.19!MBNL3;;chr12:66218183..66218209,+!p4@HMGA2!1.54!63.34!HMGA2;;chr20:42984330..42984364,+!p2@HNF4A!1.52!32.38!HNF4A;;chr19:33793430..33793447,-!p1@CEBPA!1.50!123.93!CEBPA;;chr17:70117153..70117174,+!p1@SOX9!1.48!287.09!SOX9;;chr2:171572786..171572840,+!p2@SP5!1.48!29.23!SP5;;chr2:171571796..171571808,+!p4@SP5!1.48!28.91!SP5;;chr8:11561684..11561751,+!p1@GATA4!1.45!27.42!GATA4;;chr19:2867325..2867348,+!p1@ZNF556!1.43!25.92!ZNF556;;chr1:226411361..226411366,+!p1@MIXL1!1.42!25.53!MIXL1;;chr12:66218255..66218304,+!p3@HMGA2!1.40!63.66!HMGA2;;chr10:94449703..94449718,+!p1@HHEX!1.39!88.08!HHEX;;chr17:41623692..41623715,-!p1@ETV4!1.37!93.52!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.38!HMGA2;;chr15:53082521..53082549,-!p1@ONECUT1!1.35!21.51!ONECUT1;;chr2:177053386..177053402,+!p1@HOXD1!1.34!20.72!HOXD1;;chr12:100867653..100867677,+!p2@NR1H4!1.33!20.40!NR1H4;;chr20:62680984..62680999,-!p1@SOX18!1.31!25.68!SOX18;;chr11:61520075..61520136,+!p1@C11orf9!1.30!40.02!C11orf9;;chr12:66218003..66218018,+!p9@HMGA2!1.30!23.00!HMGA2;;chr2:171571931..171571959,+!p3@SP5!1.30!19.07!SP5;;chr12:24102576..24102623,-!p2@SOX5!1.27!17.65!SOX5;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.31!PITX1;;chr9:127269661..127269719,-!p1@NR5A1!1.25!16.86!NR5A1;;chr12:66218598..66218645,+!p2@HMGA2!1.24!73.98!HMGA2;;chr19:46367576..46367592,+!p1@FOXA3!1.23!16.15!FOXA3;;chrX:131547596..131547609,-!p10@MBNL3!1.23!16.07!MBNL3;;chr17:41622925..41622976,-!p3@ETV4!1.21!22.45!ETV4;;chr2:25475120..25475176,-!p2@DNMT3A!1.21!20.33!DNMT3A;;chr16:52581025..52581072,-!p1@TOX3!1.20!14.89!TOX3;;chr2:63277948..63277974,+!p1@OTX1!1.20!14.73!OTX1;;chr8:76319876..76319926,+!p1@HNF4G!1.18!14.26!HNF4G;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.71!KDM5D;;chr10:51572408..51572454,+!p3@NCOA4!1.15!75.95!NCOA4;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.15!13.08!SEBOX;;chr1:214161328..214161348,+!p2@PROX1!1.14!12.92!PROX1;;chr12:66218836..66218888,+!p1@HMGA2!1.13!116.44!HMGA2;;chr12:66218152..66218174,+!p10@HMGA2!1.13!13.39!HMGA2;;chr2:113977697..113977733,-!p6@PAX8!1.13!12.53!PAX8;;chr20:43030002..43030028,+!p3@HNF4A!1.07!10.71!HNF4A;;chr19:926001..926046,+!p1@ARID3A!1.05!36.00!ARID3A;;chr16:68118689..68118733,+!p3@NFATC3!1.05!26.16!NFATC3;;chr17:41623667..41623682,-!p8@ETV4!1.05!10.95!ETV4;;chr20:50159198..50159299,-!p1@NFATC2!1.03!14.18!NFATC2;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.97!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.02!9.45!HMGA2;;chr12:24103844..24103880,-!p3@SOX5!1.02!9.38!SOX5;;chr3:141150883..141150961,+!p6@ZBTB38!0.99!8.74!ZBTB38;;chr14:38064590..38064606,-!p2@FOXA1!0.97!8.43!FOXA1;;chr2:25475094..25475112,-!p3@DNMT3A!0.96!8.04!DNMT3A;;chr6:7108179..7108199,+!p4@RREB1!0.94!15.84!RREB1;;chr17:41622834..41622883,-!p6@ETV4!0.94!9.45!ETV4;;chr1:214161358..214161377,+!p3@PROX1!0.94!7.72!PROX1;;chr5:134369879..134369898,-!p2@PITX1!0.94!7.64!PITX1;;chrX:128657457..128657475,-!p1@SMARCA1!0.93!91.23!SMARCA1;;chr2:239148671..239148686,-!p1@HES6!0.93!28.52!HES6;;chr2:46524897..46524911,+!p2@EPAS1!0.93!21.43!EPAS1;;chr8:37963466..37963506,+!p3@ASH2L!0.93!9.45!ASH2L;;chr19:926055..926068,+!p2@ARID3A!0.92!16.39!ARID3A;;chr7:156803329..156803362,-!p1@MNX1!0.92!7.33!MNX1;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.28!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!0.91!30.80!E2F3;;chr16:54320101..54320125,-!p4@IRX3!0.91!10.32!IRX3;;chr18:55102598..55102623,+!p1@ONECUT2!0.91!7.09!ONECUT2;;chr12:121416340..121416360,+!p1@HNF1A!0.91!7.09!HNF1A;;chr12:7079780..7079791,-!p2@PHB2!0.90!37.66!PHB2;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.14!HHEX;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.90!10.24!TGIF2;;chr19:48773337..48773339,+!p2@ZNF114!0.90!7.01!ZNF114;;chr9:127533519..127533573,-!p2@NR6A1!0.89!8.27!NR6A1;;chr7:96635178..96635181,+!p1@DLX6!0.89!6.78!DLX6;;chr12:121416455..121416479,+!p2@HNF1A!0.89!6.70!HNF1A;;chr12:66358080..66358094,+!p15@HMGA2!0.89!6.70!HMGA2;;chr20:306177..306211,+!p2@SOX12!0.88!47.51!SOX12;;chr4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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|sample_tissue=liver
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=15
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.18
|rna_od260/280=2.04
|sample_cell_type=hepatocyte
|sample_cell_line=HepG2
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=47.0895
|rna_concentration=0.94179
|sample_note=
|profile_hcage=CNhs12328,LSID913,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
|fonse_cell_line=FF:0100224,FF:0101120
|fonse_cell_line=FF:0100224,FF:0101120
|fonse_cell_line_closure=FF:0100224,FF:0101120
|fonse_cell_line_closure=FF:0100224,FF:0101120
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1
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|rna_box=111
|rna_catalog_number=
|rna_concentration=0.94179
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.18
|rna_od260/280=2.04
|rna_position=B8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=111B8
|rna_weight_ug=47.0895
|sample_age=15
|sample_category=cell lines
|sample_cell_catalog=
|sample_cell_line=HepG2
|sample_cell_lot=
|sample_cell_type=hepatocyte
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.11655878791254e-265!GO:0043231;intracellular membrane-bound organelle;2.44976091385251e-226!GO:0043227;membrane-bound organelle;2.77265845473857e-226!GO:0043226;organelle;3.38213203490956e-219!GO:0043229;intracellular organelle;8.35522496445101e-219!GO:0005737;cytoplasm;2.62386552364084e-192!GO:0044422;organelle part;8.31879031066907e-162!GO:0044446;intracellular organelle part;2.98076405183188e-160!GO:0044444;cytoplasmic part;2.7308891489009e-144!GO:0044237;cellular metabolic process;1.01598943596189e-117!GO:0044238;primary metabolic process;2.16320139938632e-114!GO:0032991;macromolecular complex;2.06752103347838e-107!GO:0030529;ribonucleoprotein complex;2.44897280105291e-94!GO:0043170;macromolecule metabolic process;1.25892610076162e-91!GO:0043233;organelle lumen;2.47512880288191e-91!GO:0031974;membrane-enclosed lumen;2.47512880288191e-91!GO:0005634;nucleus;1.78330322144329e-90!GO:0005739;mitochondrion;2.13466647548194e-87!GO:0044428;nuclear part;9.17098270336209e-87!GO:0003723;RNA binding;2.05434610218178e-83!GO:0005515;protein binding;7.19677257190772e-59!GO:0006396;RNA processing;2.72342189204417e-58!GO:0044429;mitochondrial part;4.43560196339596e-55!GO:0005840;ribosome;3.45266980728167e-54!GO:0031981;nuclear lumen;8.47039030726299e-54!GO:0043234;protein complex;3.49623404638284e-53!GO:0031090;organelle membrane;7.69133536481676e-52!GO:0006412;translation;2.50575650863706e-51!GO:0009058;biosynthetic process;2.50832238259168e-50!GO:0019538;protein metabolic process;3.54416440080366e-49!GO:0044249;cellular biosynthetic process;1.03272810058907e-47!GO:0031967;organelle envelope;3.71584700096694e-47!GO:0031975;envelope;1.00785290975508e-46!GO:0043283;biopolymer metabolic process;3.65254389360516e-46!GO:0003735;structural constituent of ribosome;3.82526847631055e-45!GO:0016071;mRNA metabolic process;5.34253401439167e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.35029610845295e-44!GO:0044267;cellular protein metabolic process;1.34829506831943e-43!GO:0010467;gene expression;1.5541317280298e-43!GO:0044260;cellular macromolecule metabolic process;1.77160214781556e-43!GO:0009059;macromolecule biosynthetic process;2.79369322937533e-42!GO:0016043;cellular component organization and biogenesis;2.22762528474706e-41!GO:0008380;RNA splicing;9.57255909532474e-41!GO:0015031;protein transport;7.4334386281156e-40!GO:0033279;ribosomal subunit;2.44764805581351e-39!GO:0033036;macromolecule localization;5.17721394791865e-39!GO:0006397;mRNA processing;5.05145545192024e-38!GO:0006259;DNA metabolic process;1.30159050964628e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.33944483349194e-37!GO:0065003;macromolecular complex assembly;3.14203828635907e-36!GO:0005829;cytosol;6.10879754347388e-36!GO:0045184;establishment of protein localization;9.22637018327141e-36!GO:0008104;protein localization;5.27843577738085e-35!GO:0046907;intracellular transport;5.65742098999799e-34!GO:0005654;nucleoplasm;2.04423351149877e-33!GO:0005740;mitochondrial envelope;3.85053983016013e-33!GO:0043228;non-membrane-bound organelle;4.69200594443236e-33!GO:0043232;intracellular non-membrane-bound organelle;4.69200594443236e-33!GO:0019866;organelle inner membrane;1.67407814131461e-32!GO:0022607;cellular component assembly;5.92758428144389e-32!GO:0006996;organelle organization and biogenesis;5.43737194657186e-31!GO:0031966;mitochondrial membrane;7.45614228512469e-31!GO:0003676;nucleic acid binding;1.95273632793045e-30!GO:0007049;cell cycle;4.73964295102821e-30!GO:0005743;mitochondrial inner membrane;2.53272856285581e-29!GO:0005681;spliceosome;8.61263640013143e-29!GO:0006886;intracellular protein transport;1.70764873570892e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.45683227152002e-27!GO:0044451;nucleoplasm part;6.79368879243158e-27!GO:0031980;mitochondrial lumen;1.33947860901442e-26!GO:0005759;mitochondrial matrix;1.33947860901442e-26!GO:0000166;nucleotide binding;1.62308385604154e-24!GO:0000278;mitotic cell cycle;1.90883749041129e-24!GO:0006974;response to DNA damage stimulus;3.48231910660124e-24!GO:0005783;endoplasmic reticulum;1.27206334427286e-23!GO:0044248;cellular catabolic process;4.43982934361397e-23!GO:0022402;cell cycle process;1.82834179725251e-22!GO:0016874;ligase activity;6.06036187752458e-22!GO:0044445;cytosolic part;7.21185228183107e-22!GO:0051649;establishment of cellular localization;9.96365869894448e-22!GO:0051641;cellular localization;1.01707131795007e-21!GO:0006119;oxidative phosphorylation;1.39129006948855e-21!GO:0015935;small ribosomal subunit;1.39129006948855e-21!GO:0006457;protein folding;3.91813715096961e-21!GO:0005694;chromosome;9.23766624037431e-21!GO:0012505;endomembrane system;1.37055679891293e-20!GO:0022618;protein-RNA complex assembly;1.66707181878616e-20!GO:0005730;nucleolus;2.27033027919958e-20!GO:0016070;RNA metabolic process;2.69614127948985e-20!GO:0044455;mitochondrial membrane part;3.26012740689277e-20!GO:0000087;M phase of mitotic cell cycle;8.01135058689913e-20!GO:0007067;mitosis;2.07330777354026e-19!GO:0006281;DNA repair;2.07330777354026e-19!GO:0051186;cofactor metabolic process;2.09454165821838e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.60847276188274e-19!GO:0016462;pyrophosphatase activity;5.9706075116889e-19!GO:0015934;large ribosomal subunit;6.92461984907763e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;7.61503248963823e-19!GO:0044432;endoplasmic reticulum part;8.10625590237716e-19!GO:0044265;cellular macromolecule catabolic process;9.19528688887481e-19!GO:0017111;nucleoside-triphosphatase activity;9.99985564226319e-19!GO:0044427;chromosomal part;1.57884083218626e-18!GO:0051276;chromosome organization and biogenesis;6.2705580322143e-18!GO:0009719;response to endogenous stimulus;7.9747327787383e-18!GO:0022403;cell cycle phase;1.10234932036283e-17!GO:0042254;ribosome biogenesis and assembly;2.42359267464214e-17!GO:0051301;cell division;2.6865686836911e-17!GO:0006260;DNA replication;4.51550088973722e-17!GO:0008135;translation factor activity, nucleic acid binding;5.20736584120722e-17!GO:0006512;ubiquitin cycle;6.67750418346135e-17!GO:0005746;mitochondrial respiratory chain;1.5532887420744e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.88006270254278e-16!GO:0017076;purine nucleotide binding;3.0463695720453e-16!GO:0005761;mitochondrial ribosome;3.24090176034929e-16!GO:0000313;organellar ribosome;3.24090176034929e-16!GO:0043285;biopolymer catabolic process;3.6356611587165e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.02176235130112e-16!GO:0005524;ATP binding;4.43255957490218e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.60701857977601e-16!GO:0016887;ATPase activity;6.11865450794013e-16!GO:0019941;modification-dependent protein catabolic process;6.5725007686265e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.5725007686265e-16!GO:0006732;coenzyme metabolic process;6.5725007686265e-16!GO:0006511;ubiquitin-dependent protein catabolic process;7.92465236033668e-16!GO:0030554;adenyl nucleotide binding;8.22551117610292e-16!GO:0044257;cellular protein catabolic process;8.4068308409457e-16!GO:0032553;ribonucleotide binding;9.04717847042643e-16!GO:0032555;purine ribonucleotide binding;9.04717847042643e-16!GO:0048770;pigment granule;1.02197442594345e-15!GO:0042470;melanosome;1.02197442594345e-15!GO:0042623;ATPase activity, coupled;1.0852440601799e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.30624421129353e-15!GO:0032559;adenyl ribonucleotide binding;1.60264673772369e-15!GO:0000279;M phase;2.16251004070441e-15!GO:0009057;macromolecule catabolic process;2.33584975129331e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.87097583762689e-15!GO:0000375;RNA splicing, via transesterification reactions;3.87097583762689e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.87097583762689e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.74150696708218e-15!GO:0003954;NADH dehydrogenase activity;4.74150696708218e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.74150696708218e-15!GO:0044453;nuclear membrane part;7.07576572774215e-15!GO:0009056;catabolic process;7.68661889239276e-15!GO:0005635;nuclear envelope;2.33434735005456e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.81516475738365e-14!GO:0031965;nuclear membrane;3.00028531399671e-14!GO:0008134;transcription factor binding;3.3231529745891e-14!GO:0051082;unfolded protein binding;5.61032647492583e-14!GO:0006605;protein targeting;5.91999310180479e-14!GO:0005789;endoplasmic reticulum membrane;6.72148829650101e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;8.8160054105878e-14!GO:0004386;helicase activity;1.06894884989062e-13!GO:0006323;DNA packaging;1.60905932204328e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.76411088981896e-13!GO:0042773;ATP synthesis coupled electron transport;2.76411088981896e-13!GO:0016604;nuclear body;3.19506088124552e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.62966959315762e-13!GO:0045271;respiratory chain complex I;5.62966959315762e-13!GO:0005747;mitochondrial respiratory chain complex I;5.62966959315762e-13!GO:0003743;translation initiation factor activity;5.96696005975299e-13!GO:0005643;nuclear pore;6.74179815286245e-13!GO:0006413;translational initiation;7.07213195647281e-13!GO:0006082;organic acid metabolic process;7.60059089651114e-13!GO:0009055;electron carrier activity;8.52815770720151e-13!GO:0019752;carboxylic acid metabolic process;9.11262624162081e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.52080065482688e-12!GO:0048193;Golgi vesicle transport;1.93907469545312e-12!GO:0030163;protein catabolic process;2.06682490771362e-12!GO:0046930;pore complex;2.1131276962793e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.26786224699244e-12!GO:0006399;tRNA metabolic process;4.3387813705903e-12!GO:0050657;nucleic acid transport;4.37194590202777e-12!GO:0051236;establishment of RNA localization;4.37194590202777e-12!GO:0050658;RNA transport;4.37194590202777e-12!GO:0006403;RNA localization;6.93190292247287e-12!GO:0006364;rRNA processing;8.90794947712814e-12!GO:0065002;intracellular protein transport across a membrane;1.53914284115912e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.95637144079707e-11!GO:0016491;oxidoreductase activity;2.26572544207334e-11!GO:0016072;rRNA metabolic process;2.58061283507124e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.08811292294653e-11!GO:0005793;ER-Golgi intermediate compartment;4.08811292294653e-11!GO:0043412;biopolymer modification;4.12913444549115e-11!GO:0008026;ATP-dependent helicase activity;4.47939402524869e-11!GO:0006446;regulation of translational initiation;4.66263715831119e-11!GO:0006461;protein complex assembly;4.80362460981321e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.60827766197751e-11!GO:0051726;regulation of cell cycle;6.89189940741035e-11!GO:0006913;nucleocytoplasmic transport;8.86076577039142e-11!GO:0000074;regulation of progression through cell cycle;1.10634194119154e-10!GO:0000785;chromatin;1.5782722182798e-10!GO:0016607;nuclear speck;1.92878869466586e-10!GO:0051169;nuclear transport;2.47221530899555e-10!GO:0051028;mRNA transport;4.48903977333337e-10!GO:0005794;Golgi apparatus;5.3505084777531e-10!GO:0008565;protein transporter activity;6.77056075703377e-10!GO:0008639;small protein conjugating enzyme activity;1.00232217311948e-09!GO:0006333;chromatin assembly or disassembly;1.07258964461632e-09!GO:0065004;protein-DNA complex assembly;1.25465640318245e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.55712120222624e-09!GO:0004842;ubiquitin-protein ligase activity;1.56753479102345e-09!GO:0016740;transferase activity;1.56753479102345e-09!GO:0016192;vesicle-mediated transport;1.61331179052337e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.30563077149098e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.30563077149098e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.30563077149098e-09!GO:0019787;small conjugating protein ligase activity;2.41120254087786e-09!GO:0006464;protein modification process;2.62407278739415e-09!GO:0006366;transcription from RNA polymerase II promoter;2.86171921083712e-09!GO:0006915;apoptosis;3.17626338167235e-09!GO:0012501;programmed cell death;3.2224689405815e-09!GO:0009259;ribonucleotide metabolic process;4.55212359494096e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.73588106668308e-09!GO:0016568;chromatin modification;4.79972325107342e-09!GO:0003712;transcription cofactor activity;4.81551708459656e-09!GO:0006163;purine nucleotide metabolic process;5.38659708782256e-09!GO:0043038;amino acid activation;7.30716444042659e-09!GO:0006418;tRNA aminoacylation for protein translation;7.30716444042659e-09!GO:0043039;tRNA aminoacylation;7.30716444042659e-09!GO:0016779;nucleotidyltransferase activity;1.15791352953357e-08!GO:0016881;acid-amino acid ligase activity;2.10619912207347e-08!GO:0008219;cell death;2.14087289847416e-08!GO:0016265;death;2.14087289847416e-08!GO:0006091;generation of precursor metabolites and energy;2.42744238015745e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.53067126075589e-08!GO:0045333;cellular respiration;2.79297231132683e-08!GO:0006261;DNA-dependent DNA replication;2.79706661278305e-08!GO:0005667;transcription factor complex;2.85800385769735e-08!GO:0051188;cofactor biosynthetic process;2.85951789985021e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.02490622519283e-08!GO:0016787;hydrolase activity;3.12202671273557e-08!GO:0009060;aerobic respiration;3.28513197097337e-08!GO:0006752;group transfer coenzyme metabolic process;3.54552045536817e-08!GO:0006164;purine nucleotide biosynthetic process;3.55253481469946e-08!GO:0032446;protein modification by small protein conjugation;4.10577470851792e-08!GO:0009150;purine ribonucleotide metabolic process;4.63736360527412e-08!GO:0009260;ribonucleotide biosynthetic process;6.30586913311117e-08!GO:0017038;protein import;6.58458892867026e-08!GO:0006520;amino acid metabolic process;7.85787895024326e-08!GO:0043687;post-translational protein modification;7.90404725871944e-08!GO:0016567;protein ubiquitination;8.14639287636443e-08!GO:0051187;cofactor catabolic process;8.86231496563452e-08!GO:0015986;ATP synthesis coupled proton transport;1.08452783694509e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.08452783694509e-07!GO:0005819;spindle;1.2329600293284e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.25258586192491e-07!GO:0043566;structure-specific DNA binding;1.79692889895198e-07!GO:0000245;spliceosome assembly;1.82158856111257e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.17314427818701e-07!GO:0000775;chromosome, pericentric region;3.26287783935949e-07!GO:0044255;cellular lipid metabolic process;3.8693382475342e-07!GO:0003697;single-stranded DNA binding;4.03775756477471e-07!GO:0009108;coenzyme biosynthetic process;4.0459202439421e-07!GO:0007005;mitochondrion organization and biogenesis;4.53207665830442e-07!GO:0006099;tricarboxylic acid cycle;4.53207665830442e-07!GO:0046356;acetyl-CoA catabolic process;4.53207665830442e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.53207665830442e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.05888463317308e-07!GO:0006950;response to stress;5.08008948383284e-07!GO:0019829;cation-transporting ATPase activity;5.24299989925219e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.44653518096425e-07!GO:0009141;nucleoside triphosphate metabolic process;5.69086980555584e-07!GO:0006334;nucleosome assembly;5.76292696142291e-07!GO:0046034;ATP metabolic process;5.91308003304185e-07!GO:0051329;interphase of mitotic cell cycle;6.32872530750995e-07!GO:0006084;acetyl-CoA metabolic process;6.38650401638018e-07!GO:0016853;isomerase activity;6.50069749056519e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.50432050332766e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.50432050332766e-07!GO:0045259;proton-transporting ATP synthase complex;8.16437320284235e-07!GO:0005788;endoplasmic reticulum lumen;1.02025845094958e-06!GO:0009308;amine metabolic process;1.0857507017449e-06!GO:0005768;endosome;1.09334734026376e-06!GO:0008094;DNA-dependent ATPase activity;1.12927125017632e-06!GO:0006754;ATP biosynthetic process;1.16167929802503e-06!GO:0006753;nucleoside phosphate metabolic process;1.16167929802503e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.17872614293276e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.17872614293276e-06!GO:0006519;amino acid and derivative metabolic process;1.28805116961778e-06!GO:0007051;spindle organization and biogenesis;1.34079196240141e-06!GO:0031497;chromatin assembly;1.36567805464763e-06!GO:0003899;DNA-directed RNA polymerase activity;1.44094436123343e-06!GO:0006807;nitrogen compound metabolic process;1.45798277008362e-06!GO:0015630;microtubule cytoskeleton;1.62814960827704e-06!GO:0042981;regulation of apoptosis;1.83405832166057e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.99410139373398e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.99410139373398e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.04328276277736e-06!GO:0043623;cellular protein complex assembly;2.19850832625306e-06!GO:0009109;coenzyme catabolic process;2.35109628991503e-06!GO:0000151;ubiquitin ligase complex;2.38565428320845e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.64394242714171e-06!GO:0043067;regulation of programmed cell death;2.7438583318263e-06!GO:0005813;centrosome;2.83019274722587e-06!GO:0003724;RNA helicase activity;2.88051311501218e-06!GO:0005657;replication fork;3.41133905809323e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.50324737029254e-06!GO:0005815;microtubule organizing center;3.53004029413309e-06!GO:0016741;transferase activity, transferring one-carbon groups;3.91313972472554e-06!GO:0008168;methyltransferase activity;4.33329157208254e-06!GO:0048037;cofactor binding;5.34336570917554e-06!GO:0005762;mitochondrial large ribosomal subunit;5.83781317526887e-06!GO:0000315;organellar large ribosomal subunit;5.83781317526887e-06!GO:0003713;transcription coactivator activity;5.88668820717829e-06!GO:0051246;regulation of protein metabolic process;5.88877010380969e-06!GO:0030120;vesicle coat;6.0301739264333e-06!GO:0030662;coated vesicle membrane;6.0301739264333e-06!GO:0051168;nuclear export;6.8060449562716e-06!GO:0000075;cell cycle checkpoint;7.63475056080465e-06!GO:0006613;cotranslational protein targeting to membrane;7.88536338941253e-06!GO:0051325;interphase;7.89835326205273e-06!GO:0016125;sterol metabolic process;8.33965279476153e-06!GO:0016363;nuclear matrix;9.19255868396904e-06!GO:0048475;coated membrane;9.72943435156765e-06!GO:0030117;membrane coat;9.72943435156765e-06!GO:0004298;threonine endopeptidase activity;1.5809381564469e-05!GO:0044452;nucleolar part;1.60424072458554e-05!GO:0043069;negative regulation of programmed cell death;1.74758222464781e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.82835702110744e-05!GO:0009117;nucleotide metabolic process;1.97079268158157e-05!GO:0000314;organellar small ribosomal subunit;1.97079268158157e-05!GO:0005763;mitochondrial small ribosomal subunit;1.97079268158157e-05!GO:0016563;transcription activator activity;1.99777484492463e-05!GO:0043066;negative regulation of apoptosis;2.0363279833088e-05!GO:0044262;cellular carbohydrate metabolic process;2.25193672275617e-05!GO:0006629;lipid metabolic process;2.40280470753402e-05!GO:0006066;alcohol metabolic process;2.55246630943947e-05!GO:0016859;cis-trans isomerase activity;2.85493955665607e-05!GO:0006401;RNA catabolic process;2.96980428823372e-05!GO:0046483;heterocycle metabolic process;3.78851405127529e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.79319824993467e-05!GO:0045454;cell redox homeostasis;3.79632694868482e-05!GO:0006302;double-strand break repair;3.84186178076468e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;4.19606033242386e-05!GO:0005770;late endosome;4.55494380708511e-05!GO:0005798;Golgi-associated vesicle;4.68466735249714e-05!GO:0051170;nuclear import;4.97260664727348e-05!GO:0003690;double-stranded DNA binding;5.07302884306689e-05!GO:0016126;sterol biosynthetic process;5.13361609591673e-05!GO:0006402;mRNA catabolic process;5.3631720372946e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.39976108933461e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.70025753351144e-05!GO:0006606;protein import into nucleus;5.80862164454005e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.35715078247024e-05!GO:0051427;hormone receptor binding;6.4006123302044e-05!GO:0008203;cholesterol metabolic process;7.38169082935947e-05!GO:0031324;negative regulation of cellular metabolic process;7.41167104440251e-05!GO:0006695;cholesterol biosynthetic process;8.10049275204876e-05!GO:0044440;endosomal part;8.10049275204876e-05!GO:0010008;endosome membrane;8.10049275204876e-05!GO:0031988;membrane-bound vesicle;8.51048842129382e-05!GO:0019843;rRNA binding;9.45392554613795e-05!GO:0008610;lipid biosynthetic process;9.49116423892342e-05!GO:0030880;RNA polymerase complex;9.64906534073529e-05!GO:0016564;transcription repressor activity;0.000101445247361738!GO:0016023;cytoplasmic membrane-bound vesicle;0.00010532000204969!GO:0043021;ribonucleoprotein binding;0.000118055242549902!GO:0045786;negative regulation of progression through cell cycle;0.000126585113371606!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00012678343240514!GO:0015399;primary active transmembrane transporter activity;0.00012678343240514!GO:0050662;coenzyme binding;0.00012891699427777!GO:0035257;nuclear hormone receptor binding;0.000133004232556549!GO:0008654;phospholipid biosynthetic process;0.000133004232556549!GO:0030867;rough endoplasmic reticulum membrane;0.000144164581179296!GO:0008186;RNA-dependent ATPase activity;0.000150796579681777!GO:0008033;tRNA processing;0.00015541133000454!GO:0051052;regulation of DNA metabolic process;0.000166816873974522!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00018891602860805!GO:0042802;identical protein binding;0.000193306794088765!GO:0043681;protein import into mitochondrion;0.000200907680273397!GO:0000776;kinetochore;0.000201327794046505!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00020252370175183!GO:0019867;outer membrane;0.000213953423153638!GO:0031968;organelle outer membrane;0.000214805069862146!GO:0003729;mRNA binding;0.000226124513853502!GO:0009892;negative regulation of metabolic process;0.000227697845933324!GO:0003684;damaged DNA binding;0.00023886033621794!GO:0008652;amino acid biosynthetic process;0.000243965483855746!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000243965483855746!GO:0000428;DNA-directed RNA polymerase complex;0.000243965483855746!GO:0007059;chromosome segregation;0.00025199991029434!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000269616416632711!GO:0044431;Golgi apparatus part;0.000280623335912387!GO:0050794;regulation of cellular process;0.000285970042272095!GO:0019899;enzyme binding;0.00028684151799105!GO:0007088;regulation of mitosis;0.000315029137948913!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000349608351867961!GO:0005791;rough endoplasmic reticulum;0.000352433111683133!GO:0006352;transcription initiation;0.000379945022180553!GO:0042157;lipoprotein metabolic process;0.00038589264708511!GO:0006626;protein targeting to mitochondrion;0.000409350358653681!GO:0003682;chromatin binding;0.000418880381389052!GO:0005741;mitochondrial outer membrane;0.000423137326438042!GO:0004004;ATP-dependent RNA helicase activity;0.000427907228382884!GO:0006612;protein targeting to membrane;0.000466032479273306!GO:0005048;signal sequence binding;0.000489814607604073!GO:0022890;inorganic cation transmembrane transporter activity;0.000502221040717029!GO:0006414;translational elongation;0.000523069643380712!GO:0006338;chromatin remodeling;0.000542426735759941!GO:0006916;anti-apoptosis;0.000547937477031543!GO:0000786;nucleosome;0.000558540606997052!GO:0032508;DNA duplex unwinding;0.000587517687571212!GO:0032392;DNA geometric change;0.000587517687571212!GO:0000082;G1/S transition of mitotic cell cycle;0.00060915208133101!GO:0006839;mitochondrial transport;0.000620538057742369!GO:0003714;transcription corepressor activity;0.000680690714741469!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000712739945636985!GO:0006793;phosphorus metabolic process;0.000720256507304017!GO:0006796;phosphate metabolic process;0.000720256507304017!GO:0031982;vesicle;0.000737264916114517!GO:0030134;ER to Golgi transport vesicle;0.000780007227322261!GO:0006383;transcription from RNA polymerase III promoter;0.000801112321844779!GO:0006118;electron transport;0.000804887694146186!GO:0019222;regulation of metabolic process;0.000818839704437567!GO:0000059;protein import into nucleus, docking;0.000833164182386429!GO:0032787;monocarboxylic acid metabolic process;0.000868282488577627!GO:0005684;U2-dependent spliceosome;0.000885175707006934!GO:0030521;androgen receptor signaling pathway;0.000885175707006934!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000885175707006934!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000916811888281345!GO:0051920;peroxiredoxin activity;0.000966395825456788!GO:0031410;cytoplasmic vesicle;0.000987228135118545!GO:0043284;biopolymer biosynthetic process;0.0011257183959211!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00116924474360464!GO:0006595;polyamine metabolic process;0.00117436324303898!GO:0051252;regulation of RNA metabolic process;0.00117797508402615!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00127779942948903!GO:0048500;signal recognition particle;0.0012964227918787!GO:0006268;DNA unwinding during replication;0.00129991519497594!GO:0048523;negative regulation of cellular process;0.00130231174150865!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00130257380648126!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00130257380648126!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00130257380648126!GO:0043492;ATPase activity, coupled to movement of substances;0.00135956821551092!GO:0033116;ER-Golgi intermediate compartment membrane;0.00137471453311642!GO:0007006;mitochondrial membrane organization and biogenesis;0.001377267910183!GO:0003746;translation elongation factor activity;0.00149232297393234!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00155866676656905!GO:0016408;C-acyltransferase activity;0.00157365781424202!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00161474274410458!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00161883926876214!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00161883926876214!GO:0051789;response to protein stimulus;0.00164623659167751!GO:0006986;response to unfolded protein;0.00164623659167751!GO:0004527;exonuclease activity;0.00166775415670251!GO:0042393;histone binding;0.00168692148482532!GO:0051659;maintenance of mitochondrion localization;0.00170128011756971!GO:0051657;maintenance of organelle localization;0.00170128011756971!GO:0000096;sulfur amino acid metabolic process;0.00171554377612428!GO:0008139;nuclear localization sequence binding;0.00174029787145261!GO:0007052;mitotic spindle organization and biogenesis;0.00174585980747104!GO:0007093;mitotic cell cycle checkpoint;0.00177790297881954!GO:0005885;Arp2/3 protein complex;0.0017835432310753!GO:0016251;general RNA polymerase II transcription factor activity;0.00178551585766899!GO:0031072;heat shock protein binding;0.00178551585766899!GO:0048471;perinuclear region of cytoplasm;0.00185106237792777!GO:0005975;carbohydrate metabolic process;0.00191024871796046!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00200878951259518!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00202335740002277!GO:0005773;vacuole;0.00209027465751963!GO:0006405;RNA export from nucleus;0.00209284859897655!GO:0042158;lipoprotein biosynthetic process;0.00214049110696987!GO:0030127;COPII vesicle coat;0.00219486661818424!GO:0012507;ER to Golgi transport vesicle membrane;0.00219486661818424!GO:0016310;phosphorylation;0.00224850891232516!GO:0030658;transport vesicle membrane;0.00228037947343796!GO:0019439;aromatic compound catabolic process;0.00230144859674243!GO:0006270;DNA replication initiation;0.0023403439556748!GO:0005637;nuclear inner membrane;0.00234417517924745!GO:0005769;early endosome;0.00234417517924745!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00234786822352198!GO:0016407;acetyltransferase activity;0.00238703418493199!GO:0006611;protein export from nucleus;0.00239629092801073!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.00245924600064714!GO:0016746;transferase activity, transferring acyl groups;0.00248549882541497!GO:0003678;DNA helicase activity;0.00251991905720646!GO:0003711;transcription elongation regulator activity;0.00260475796021128!GO:0004518;nuclease activity;0.00274209745343161!GO:0005876;spindle microtubule;0.00280084475338835!GO:0008312;7S RNA binding;0.00283253894502408!GO:0009303;rRNA transcription;0.00286364034366484!GO:0030133;transport vesicle;0.00286952914956123!GO:0043488;regulation of mRNA stability;0.00290800011912441!GO:0043487;regulation of RNA stability;0.00290800011912441!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00297895387519923!GO:0006818;hydrogen transport;0.00297900476158651!GO:0005758;mitochondrial intermembrane space;0.00310424341293975!GO:0006979;response to oxidative stress;0.00310588533511961!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00313735241142592!GO:0009165;nucleotide biosynthetic process;0.00313925232108922!GO:0009064;glutamine family amino acid metabolic process;0.00314794538388706!GO:0051087;chaperone binding;0.0031783656894633!GO:0035258;steroid hormone receptor binding;0.0034071994561773!GO:0000049;tRNA binding;0.00346283774359671!GO:0046474;glycerophospholipid biosynthetic process;0.003561818582236!GO:0000922;spindle pole;0.003561818582236!GO:0009063;amino acid catabolic process;0.003561818582236!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00380803693555372!GO:0015002;heme-copper terminal oxidase activity;0.00380803693555372!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00380803693555372!GO:0004129;cytochrome-c oxidase activity;0.00380803693555372!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0038755494769857!GO:0045047;protein targeting to ER;0.0038755494769857!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00392834333057355!GO:0015992;proton transport;0.00397800321018248!GO:0008629;induction of apoptosis by intracellular signals;0.00402840858349058!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00412355682309788!GO:0031252;leading edge;0.00416815016900267!GO:0008415;acyltransferase activity;0.00420700197778565!GO:0006749;glutathione metabolic process;0.00455872646045446!GO:0005777;peroxisome;0.00458335827246581!GO:0042579;microbody;0.00458335827246581!GO:0007040;lysosome organization and biogenesis;0.00461705465304365!GO:0047485;protein N-terminus binding;0.00463275510288993!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00466252280005524!GO:0009451;RNA modification;0.00470697041442613!GO:0008022;protein C-terminus binding;0.00471696482514406!GO:0016197;endosome transport;0.00471968258236262!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00480593582015299!GO:0042770;DNA damage response, signal transduction;0.00483031660404848!GO:0000819;sister chromatid segregation;0.00483171495709325!GO:0000323;lytic vacuole;0.00485777290680662!GO:0005764;lysosome;0.00485777290680662!GO:0008632;apoptotic program;0.00490628633910627!GO:0030660;Golgi-associated vesicle membrane;0.00503901478529752!GO:0006596;polyamine biosynthetic process;0.00514544306022688!GO:0005996;monosaccharide metabolic process;0.00525149783726588!GO:0006284;base-excision repair;0.00536938172526853!GO:0006275;regulation of DNA replication;0.0053754584801056!GO:0006650;glycerophospholipid metabolic process;0.00557884092770736!GO:0008202;steroid metabolic process;0.00560856773922049!GO:0003702;RNA polymerase II transcription factor activity;0.00564024286738567!GO:0031647;regulation of protein stability;0.00584717292429417!GO:0031124;mRNA 3'-end processing;0.00596320499995889!GO:0000070;mitotic sister chromatid segregation;0.00596320499995889!GO:0031970;organelle envelope lumen;0.00596320499995889!GO:0006497;protein amino acid lipidation;0.00601310736223292!GO:0048519;negative regulation of biological process;0.00619543977855753!GO:0006541;glutamine metabolic process;0.00622979321655753!GO:0016481;negative regulation of transcription;0.00629024366751919!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00636131414118922!GO:0000139;Golgi membrane;0.00636878271411454!GO:0009112;nucleobase metabolic process;0.00670211943896182!GO:0065009;regulation of a molecular function;0.00670456766759989!GO:0006144;purine base metabolic process;0.00696206981657011!GO:0019318;hexose metabolic process;0.00719225020120103!GO:0006891;intra-Golgi vesicle-mediated transport;0.00732939949011372!GO:0006310;DNA recombination;0.00777575816811347!GO:0004532;exoribonuclease activity;0.00789645237765632!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00789645237765632!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00797714970220765!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0080540904006807!GO:0030518;steroid hormone receptor signaling pathway;0.0089417324080056!GO:0044270;nitrogen compound catabolic process;0.00896435743096803!GO:0051716;cellular response to stimulus;0.00911542778925888!GO:0043022;ribosome binding;0.00944930809000182!GO:0005832;chaperonin-containing T-complex;0.00972849421882327!GO:0033673;negative regulation of kinase activity;0.0098256416318548!GO:0006469;negative regulation of protein kinase activity;0.0098256416318548!GO:0006354;RNA elongation;0.00984547835454034!GO:0046983;protein dimerization activity;0.00987278217820691!GO:0008180;signalosome;0.00990200149556685!GO:0031323;regulation of cellular metabolic process;0.00990200149556685!GO:0000725;recombinational repair;0.0102830130877535!GO:0000724;double-strand break repair via homologous recombination;0.0102830130877535!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0104225582968542!GO:0006790;sulfur metabolic process;0.0104878019886982!GO:0006642;triacylglycerol mobilization;0.010571060924705!GO:0008320;protein transmembrane transporter activity;0.010630363111607!GO:0006289;nucleotide-excision repair;0.0107366332404343!GO:0003756;protein disulfide isomerase activity;0.0109226866984998!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0109226866984998!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0109226866984998!GO:0007017;microtubule-based process;0.010932602369471!GO:0043596;nuclear replication fork;0.0111467330210654!GO:0016272;prefoldin complex;0.0112569752418512!GO:0006778;porphyrin metabolic process;0.0112569752418512!GO:0033013;tetrapyrrole metabolic process;0.0112569752418512!GO:0000178;exosome (RNase complex);0.0112569752418512!GO:0030663;COPI coated vesicle membrane;0.0112967689067545!GO:0030126;COPI vesicle coat;0.0112967689067545!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0116539442248509!GO:0001889;liver development;0.0117118482167372!GO:0043407;negative regulation of MAP kinase activity;0.0120863518980559!GO:0051539;4 iron, 4 sulfur cluster binding;0.0121323028515924!GO:0004300;enoyl-CoA hydratase activity;0.0123815705653557!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0123815705653557!GO:0046489;phosphoinositide biosynthetic process;0.0123863079154511!GO:0050750;low-density lipoprotein receptor binding;0.0126520288132155!GO:0009310;amine catabolic process;0.012755548774037!GO:0005525;GTP binding;0.012856270282319!GO:0008538;proteasome activator activity;0.0129226867020656!GO:0051287;NAD binding;0.013075821154964!GO:0007033;vacuole organization and biogenesis;0.0132994194039143!GO:0050789;regulation of biological process;0.0133340555498256!GO:0051348;negative regulation of transferase activity;0.0134644561807101!GO:0003924;GTPase activity;0.0134904356038341!GO:0009066;aspartate family amino acid metabolic process;0.0140866744605915!GO:0004576;oligosaccharyl transferase activity;0.0143291269002897!GO:0050681;androgen receptor binding;0.0144503049566006!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0154800119788551!GO:0006378;mRNA polyadenylation;0.0156292454617198!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0161247585871371!GO:0051101;regulation of DNA binding;0.0162218760594909!GO:0006506;GPI anchor biosynthetic process;0.0162952559619651!GO:0006631;fatty acid metabolic process;0.0169227825360016!GO:0050748;negative regulation of lipoprotein metabolic process;0.016962318086155!GO:0032200;telomere organization and biogenesis;0.0176146565152446!GO:0000723;telomere maintenance;0.0176146565152446!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0179450826529155!GO:0031570;DNA integrity checkpoint;0.0179518192842945!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0181820149179226!GO:0000287;magnesium ion binding;0.0182486671883929!GO:0000097;sulfur amino acid biosynthetic process;0.0186864910656972!GO:0043624;cellular protein complex disassembly;0.0186864910656972!GO:0004540;ribonuclease activity;0.0189838152281121!GO:0000209;protein polyubiquitination;0.0189838152281121!GO:0006505;GPI anchor metabolic process;0.0191467038592745!GO:0000792;heterochromatin;0.0192213263181759!GO:0051540;metal cluster binding;0.0197139911620544!GO:0051536;iron-sulfur cluster binding;0.0197139911620544!GO:0004177;aminopeptidase activity;0.0199589324939985!GO:0006740;NADPH regeneration;0.0199745146583097!GO:0006098;pentose-phosphate shunt;0.0199745146583097!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0202546826798182!GO:0031123;RNA 3'-end processing;0.020542189130043!GO:0004722;protein serine/threonine phosphatase activity;0.0212364947701618!GO:0030176;integral to endoplasmic reticulum membrane;0.0219717163367893!GO:0000339;RNA cap binding;0.0221853724599278!GO:0006400;tRNA modification;0.0222184636890442!GO:0005663;DNA replication factor C complex;0.0224086025617675!GO:0005774;vacuolar membrane;0.0226760632878649!GO:0015682;ferric iron transport;0.0230032241248862!GO:0015091;ferric iron transmembrane transporter activity;0.0230032241248862!GO:0031643;positive regulation of myelination;0.0230032241248862!GO:0005874;microtubule;0.023060661002562!GO:0031625;ubiquitin protein ligase binding;0.0232617379262757!GO:0015631;tubulin binding;0.0232617379262757!GO:0009074;aromatic amino acid family catabolic process;0.0233718664401034!GO:0005669;transcription factor TFIID complex;0.0233718664401034!GO:0008286;insulin receptor signaling pathway;0.0234472259873003!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0235925549694081!GO:0006417;regulation of translation;0.02396285556837!GO:0043601;nuclear replisome;0.0242814738044142!GO:0030894;replisome;0.0242814738044142!GO:0005905;coated pit;0.0242945422623068!GO:0006376;mRNA splice site selection;0.0243136891662519!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0243136891662519!GO:0008361;regulation of cell size;0.0245147154179444!GO:0042168;heme metabolic process;0.0246626925407176!GO:0000228;nuclear chromosome;0.0249376899728589!GO:0006301;postreplication repair;0.0250782104340977!GO:0004003;ATP-dependent DNA helicase activity;0.0254665150363959!GO:0031326;regulation of cellular biosynthetic process;0.025631787317529!GO:0000152;nuclear ubiquitin ligase complex;0.0257541672034102!GO:0008250;oligosaccharyl transferase complex;0.0261462220911504!GO:0006518;peptide metabolic process;0.0264039034195863!GO:0006720;isoprenoid metabolic process;0.026655491728632!GO:0030137;COPI-coated vesicle;0.0267882578457999!GO:0045045;secretory pathway;0.0268607366924523!GO:0007021;tubulin folding;0.0271910035512443!GO:0005732;small nucleolar ribonucleoprotein complex;0.0274433517956768!GO:0016835;carbon-oxygen lyase activity;0.0279278387583908!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0280348144502865!GO:0005652;nuclear lamina;0.0280999461418367!GO:0006730;one-carbon compound metabolic process;0.0280999461418367!GO:0045893;positive regulation of transcription, DNA-dependent;0.0281362958203241!GO:0000781;chromosome, telomeric region;0.0282576391167234!GO:0001558;regulation of cell growth;0.0287787431611832!GO:0004680;casein kinase activity;0.0294343769237606!GO:0031902;late endosome membrane;0.0296052853054625!GO:0008536;Ran GTPase binding;0.029614801763382!GO:0044272;sulfur compound biosynthetic process;0.0301305941261284!GO:0009116;nucleoside metabolic process;0.0303082868637824!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0308459359546966!GO:0006379;mRNA cleavage;0.0312523797255189!GO:0040029;regulation of gene expression, epigenetic;0.0315421722325209!GO:0006081;aldehyde metabolic process;0.031590587963779!GO:0016044;membrane organization and biogenesis;0.0320401840225925!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0320401840225925!GO:0030384;phosphoinositide metabolic process;0.0320401840225925!GO:0051053;negative regulation of DNA metabolic process;0.0324370671492031!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.032654804322046!GO:0005784;translocon complex;0.0327732678545278!GO:0030118;clathrin coat;0.0336968445863046!GO:0044438;microbody part;0.0337850182871985!GO:0044439;peroxisomal part;0.0337850182871985!GO:0009225;nucleotide-sugar metabolic process;0.0338890763058884!GO:0008299;isoprenoid biosynthetic process;0.0347519697601521!GO:0043189;H4/H2A histone acetyltransferase complex;0.035367098284026!GO:0032984;macromolecular complex disassembly;0.0353843137452052!GO:0001887;selenium metabolic process;0.0353843137452052!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0357454767592933!GO:0008537;proteasome activator complex;0.0363025527956861!GO:0006350;transcription;0.0365280577149276!GO:0008216;spermidine metabolic process;0.0369810766804638!GO:0030261;chromosome condensation;0.0369810766804638!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0375216832500117!GO:0009067;aspartate family amino acid biosynthetic process;0.0380700604570917!GO:0007346;regulation of progression through mitotic cell cycle;0.0380700604570917!GO:0042026;protein refolding;0.0380858002790396!GO:0016049;cell growth;0.038291197047685!GO:0030522;intracellular receptor-mediated signaling pathway;0.0384119370123066!GO:0016790;thiolester hydrolase activity;0.0384147489764655!GO:0007004;telomere maintenance via telomerase;0.0384769971833644!GO:0017166;vinculin binding;0.038566064779818!GO:0030027;lamellipodium;0.0392018231366807!GO:0030036;actin cytoskeleton organization and biogenesis;0.0392769998385402!GO:0007034;vacuolar transport;0.0398206239111459!GO:0032259;methylation;0.0398383303733848!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0398948634714749!GO:0045039;protein import into mitochondrial inner membrane;0.0398948634714749!GO:0006006;glucose metabolic process;0.0403780844905801!GO:0031371;ubiquitin conjugating enzyme complex;0.0403780844905801!GO:0008295;spermidine biosynthetic process;0.0403780844905801!GO:0031406;carboxylic acid binding;0.0403780844905801!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0403780844905801!GO:0022406;membrane docking;0.0405153401955174!GO:0048278;vesicle docking;0.0405153401955174!GO:0019438;aromatic compound biosynthetic process;0.0405173138577619!GO:0008143;poly(A) binding;0.0408014059381429!GO:0004873;asialoglycoprotein receptor activity;0.0410122052121741!GO:0051338;regulation of transferase activity;0.0411568455291059!GO:0051098;regulation of binding;0.0418168440088008!GO:0004448;isocitrate dehydrogenase activity;0.041890203667165!GO:0006907;pinocytosis;0.0421239048223983!GO:0000175;3'-5'-exoribonuclease activity;0.0424212494151298!GO:0019959;interleukin-8 binding;0.0425457451049743!GO:0010037;response to carbon dioxide;0.0425457451049743!GO:0018196;peptidyl-asparagine modification;0.0427894226143616!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0427894226143616!GO:0006635;fatty acid beta-oxidation;0.0429852422401594!GO:0004185;serine carboxypeptidase activity;0.0431215363534999!GO:0030508;thiol-disulfide exchange intermediate activity;0.0436523763901111!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0436711596932664!GO:0046982;protein heterodimerization activity;0.0436752426349558!GO:0043241;protein complex disassembly;0.0442341478609654!GO:0009124;nucleoside monophosphate biosynthetic process;0.0442341478609654!GO:0009123;nucleoside monophosphate metabolic process;0.0442341478609654!GO:0000123;histone acetyltransferase complex;0.0443394194444449!GO:0001832;blastocyst growth;0.0443394194444449!GO:0008430;selenium binding;0.0443394194444449!GO:0004659;prenyltransferase activity;0.0448474494553082!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0448524179621303!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0449584096135783!GO:0044437;vacuolar part;0.044970685464676!GO:0050178;phenylpyruvate tautomerase activity;0.0452960811790393!GO:0008017;microtubule binding;0.0461833633193806!GO:0045941;positive regulation of transcription;0.0463273092309297!GO:0046467;membrane lipid biosynthetic process;0.0464312900193517!GO:0009889;regulation of biosynthetic process;0.0464776805908146!GO:0004523;ribonuclease H activity;0.0465757104432709!GO:0006564;L-serine biosynthetic process;0.0465757104432709!GO:0050749;apolipoprotein E receptor binding;0.0468183795225112!GO:0019321;pentose metabolic process;0.0470341713178412!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0473395881896779!GO:0016584;nucleosome positioning;0.0479195698745706!GO:0030911;TPR domain binding;0.0479836456862415!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0483156515872!GO:0035267;NuA4 histone acetyltransferase complex;0.0483156515872!GO:0044450;microtubule organizing center part;0.0485581908451709!GO:0002018;renin-angiotensin regulation of aldosterone production;0.0487686823328378!GO:0048143;astrocyte activation;0.0487686823328378!GO:0046622;positive regulation of organ growth;0.0487686823328378!GO:0031701;angiotensin receptor binding;0.0487686823328378!GO:0031703;type 2 angiotensin receptor binding;0.0487686823328378!GO:0045723;positive regulation of fatty acid biosynthetic process;0.0487686823328378!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.0487686823328378!GO:0042756;drinking behavior;0.0487686823328378!GO:0002019;angiotensin mediated regulation of renal output;0.0487686823328378!GO:0031702;type 1 angiotensin receptor binding;0.0487686823328378!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.0487686823328378!GO:0000726;non-recombinational repair;0.0488451948308275!GO:0016829;lyase activity;0.0488451948308275!GO:0008637;apoptotic mitochondrial changes;0.049783226965114!GO:0031577;spindle checkpoint;0.0498950819170908
|sample_id=10818
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=liver
|top_motifs=HNF4A_NR2F1,2:4.6336281934;HNF1A:3.99717269921;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.60930536053;FOXA2:3.33927933333;LEF1_TCF7_TCF7L1,2:2.15397537322;bHLH_family:2.12741821655;FOX{F1,F2,J1}:1.80206720245;NFY{A,B,C}:1.67298401765;ONECUT1,2:1.53306514262;E2F1..5:1.47218935472;NR6A1:1.41105575924;ELK1,4_GABP{A,B1}:1.22812324132;ADNP_IRX_SIX_ZHX:1.22622287794;ZNF143:1.21370728208;YY1:1.19944744554;NR1H4:1.12160458658;PBX1:1.09634034476;SOX{8,9,10}:1.00298395579;GFI1:0.922058059351;PAX3,7:0.902921312315;EN1,2:0.901876383469;SNAI1..3:0.87566846701;NRF1:0.859955649586;NR5A1,2:0.828385734518;RORA:0.810472286197;AIRE:0.783046346075;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.7259271211;NKX3-2:0.673379995048;MYB:0.672073145583;ZEB1:0.659359050625;FOXM1:0.562649799346;SOX2:0.547227504721;CEBPA,B_DDIT3:0.52604824284;TFDP1:0.488342553285;ESRRA:0.454063815212;LHX3,4:0.436469281847;FOX{D1,D2}:0.402919953036;AR:0.388461214754;TP53:0.368832507105;POU6F1:0.338689630283;EBF1:0.307678860475;ALX4:0.303356254065;XCPE1{core}:0.297641052304;FOXD3:0.296436459775;TOPORS:0.287623212965;MYOD1:0.286324937579;PITX1..3:0.277354300827;HIC1:0.272534599514;RXRA_VDR{dimer}:0.272479340097;PPARG:0.264385959956;NFIL3:0.252935182129;HLF:0.243785436409;PAX4:0.202287790417;CUX2:0.175411786385;ZFP161:0.105377995485;MTE{core}:0.0955578009168;UFEwm:0.0862451185798;ELF1,2,4:0.083898217054;BREu{core}:0.0827288776191;SP1:0.0764001649076;T:0.0567543349752;DBP:0.0507037044456;GATA6:0.0358617307176;FOXP1:0.02042952028;NKX3-1:-0.0091455844359;PAX1,9:-0.0244231561868;STAT5{A,B}:-0.0254456577132;RXR{A,B,G}:-0.0527394006977;SOX5:-0.0591386476518;MAZ:-0.0618925932423;HOX{A6,A7,B6,B7}:-0.0630616025849;HOXA9_MEIS1:-0.0808632429101;PAX2:-0.0813891995176;FOXQ1:-0.0863150778232;VSX1,2:-0.0867928497714;TFAP2{A,C}:-0.088404735657;SREBF1,2:-0.100780591823;SOX17:-0.113059214839;CDC5L:-0.119628746783;TBX4,5:-0.137838726667;STAT2,4,6:-0.150788072923;TFCP2:-0.168986524537;ARID5B:-0.169765936193;NFKB1_REL_RELA:-0.179256503135;EVI1:-0.181421948364;KLF4:-0.199461110483;HOX{A5,B5}:-0.231126104355;POU3F1..4:-0.231380848457;PATZ1:-0.235080086706;IKZF2:-0.249566713957;RBPJ:-0.251541126389;MTF1:-0.257721985754;TEAD1:-0.265014278276;PAX8:-0.274785039974;GLI1..3:-0.289152488983;LMO2:-0.291892020951;AHR_ARNT_ARNT2:-0.29329109175;TAL1_TCF{3,4,12}:-0.296079428629;OCT4_SOX2{dimer}:-0.300254852144;MED-1{core}:-0.304332159387;HES1:-0.307012617688;ATF5_CREB3:-0.334769975363;ESR1:-0.340029799811;ALX1:-0.359474450378;ZNF423:-0.369557480886;TLX1..3_NFIC{dimer}:-0.374985232375;NFE2:-0.380027598146;ATF6:-0.380262361062;HMGA1,2:-0.386767557068;NKX2-3_NKX2-5:-0.389337039091;BPTF:-0.389647665459;FOXO1,3,4:-0.396370466887;FOSL2:-0.396973575047;FOXN1:-0.415294191135;IRF7:-0.448223816162;HOX{A4,D4}:-0.45066667056;PDX1:-0.451787256182;ZNF148:-0.456217717467;STAT1,3:-0.459254490781;DMAP1_NCOR{1,2}_SMARC:-0.460719613092;FOXP3:-0.480720551971;REST:-0.495102245442;NFIX:-0.495141346024;POU2F1..3:-0.504319834073;NKX6-1,2:-0.513621985632;CREB1:-0.536924423225;GTF2A1,2:-0.552714762347;POU5F1:-0.556391852954;RFX2..5_RFXANK_RFXAP:-0.556599876882;FOS_FOS{B,L1}_JUN{B,D}:-0.569258452363;NFE2L2:-0.572069391369;NR3C1:-0.576684824434;IRF1,2:-0.586548740652;BACH2:-0.602430716358;EGR1..3:-0.604632244846;GATA4:-0.612778289875;IKZF1:-0.629078627408;TBP:-0.630279575528;ZBTB16:-0.657023167473;ATF2:-0.664382555617;PAX5:-0.671009802437;NANOG{mouse}:-0.672935505211;TFAP2B:-0.67642168335;SPIB:-0.680899141763;XBP1:-0.686242024725;RREB1:-0.688815481404;SPI1:-0.698228639668;CDX1,2,4:-0.709918155467;ATF4:-0.715802125117;MYBL2:-0.775715607337;MEF2{A,B,C,D}:-0.780468707287;NHLH1,2:-0.784899818125;SRF:-0.824322749622;HAND1,2:-0.846714368056;JUN:-0.86010430025;RUNX1..3:-0.863473292534;GTF2I:-0.86668683575;RFX1:-0.908163007912;GCM1,2:-0.917002267437;NKX2-2,8:-0.919300342945;HSF1,2:-0.96632803329;TFAP4:-0.98925164156;CRX:-1.00233198688;ZIC1..3:-1.01473277458;POU1F1:-1.03152041126;MYFfamily:-1.03366152559;ZBTB6:-1.04522230986;ETS1,2:-1.05258606165;PRDM1:-1.07715176868;MAFB:-1.08155965378;GFI1B:-1.1136452616;PAX6:-1.11478530939;NFE2L1:-1.11747408716;NKX2-1,4:-1.11937821277;ZNF384:-1.13048107978;EP300:-1.22663243284;SPZ1:-1.24007400003;FOX{I1,J2}:-1.2543459242;PRRX1,2:-1.25451630451;MZF1:-1.25575545947;TEF:-1.27780133315;NFATC1..3:-1.30437750482;NANOG:-1.38164792331;TGIF1:-1.39220943109;FOXL1:-1.52930909718;ZNF238:-1.62360021352;HBP1_HMGB_SSRP1_UBTF:-1.63393470762;GZF1:-1.6454587951;TLX2:-1.73277421616;HIF1A:-1.89638195561;HMX1:-1.9038884297;SMAD1..7,9:-2.02116633165
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10818-111B8;search_select_hide=table117:FF:10818-111B8
}}
}}

Latest revision as of 15:06, 3 June 2020

Name:hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1
Species:Human (Homo sapiens)
Library ID:CNhs12328
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexmale
age15
cell typehepatocyte
cell lineHepG2
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004811
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12328 CAGE DRX007905 DRR008777
Accession ID Hg19

Library idBAMCTSS
CNhs12328 DRZ000202 DRZ001587
Accession ID Hg38

Library idBAMCTSS
CNhs12328 DRZ011552 DRZ012937
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.293
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.565
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.252
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.975
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0323
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.316
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0297
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.156
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0488
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0635
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.428
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0132
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.0329
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0.484
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.545
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.119
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0329
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.0329
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0.694
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.323
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12328

Jaspar motifP-value
MA0002.20.0105
MA0003.10.784
MA0004.10.0732
MA0006.10.519
MA0007.10.667
MA0009.10.526
MA0014.10.225
MA0017.15.79612e-25
MA0018.20.0837
MA0019.10.876
MA0024.12.50171e-6
MA0025.10.589
MA0027.10.436
MA0028.11.33431e-5
MA0029.10.00591
MA0030.10.332
MA0031.10.0508
MA0035.20.0172
MA0038.10.0919
MA0039.20.137
MA0040.10.365
MA0041.10.518
MA0042.10.264
MA0043.10.589
MA0046.11.5911e-74
MA0047.21.41803e-4
MA0048.10.0199
MA0050.10.102
MA0051.10.092
MA0052.10.0213
MA0055.11.90065e-5
MA0057.10.913
MA0058.10.0142
MA0059.10.0539
MA0060.17.73912e-17
MA0061.16.64082e-4
MA0062.26.79845e-5
MA0065.22.01494e-8
MA0066.10.635
MA0067.10.00296
MA0068.10.545
MA0069.10.795
MA0070.10.259
MA0071.10.259
MA0072.10.267
MA0073.10.702
MA0074.10.504
MA0076.11.6637e-5
MA0077.10.0589
MA0078.10.545
MA0079.20.646
MA0080.22.68846e-9
MA0081.10.147
MA0083.10.0214
MA0084.10.34
MA0087.10.463
MA0088.10.11
MA0090.10.964
MA0091.10.0419
MA0092.10.0685
MA0093.10.035
MA0099.21.66721e-9
MA0100.10.105
MA0101.10.169
MA0102.20.34
MA0103.10.037
MA0104.20.00991
MA0105.10.00137
MA0106.10.0212
MA0107.10.0134
MA0108.20.123
MA0111.10.797
MA0112.20.768
MA0113.10.958
MA0114.12.76165e-34
MA0115.11.23559e-8
MA0116.10.5
MA0117.10.341
MA0119.10.048
MA0122.10.315
MA0124.10.624
MA0125.10.369
MA0131.10.128
MA0135.10.538
MA0136.19.37614e-5
MA0137.20.203
MA0138.20.489
MA0139.10.00751
MA0140.10.018
MA0141.14.68434e-5
MA0142.10.913
MA0143.10.768
MA0144.10.185
MA0145.10.213
MA0146.10.00208
MA0147.10.0141
MA0148.12.44163e-4
MA0149.10.29
MA0150.10.00656
MA0152.10.204
MA0153.12.86996e-47
MA0154.10.258
MA0155.10.935
MA0156.10.0116
MA0157.10.259
MA0159.10.186
MA0160.10.0103
MA0162.10.899
MA0163.10.0854
MA0164.10.409
MA0258.10.75
MA0259.10.0601



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12328

Novel motifP-value
10.438
100.553
1000.0352
1010.326
1020.161
1030.767
1040.695
1050.937
1060.0139
1070.576
1080.427
1090.0825
110.752
1100.919
1110.698
1120.172
1130.0935
1140.368
1150.642
1160.883
1170.124
1180.347
1190.89
120.603
1200.382
1210.58
1220.867
1230.394
1240.174
1250.483
1260.581
1270.34
1280.0128
1290.785
131.06797e-4
1300.813
1310.0261
1320.571
1330.00841
1340.402
1350.0394
1360.0132
1370.00231
1380.379
1390.227
140.0662
1400.7
1410.222
1420.748
1430.129
1440.437
1450.645
1460.904
1470.575
1480.893
1490.784
150.933
1500.53
1510.727
1520.996
1530.344
1540.138
1550.279
1560.884
1570.485
1580.991
1590.678
160.716
1600.752
1610.929
1620.801
1630.704
1640.999
1650.724
1660.352
1670.989
1680.231
1690.287
170.705
180.0495
190.808
20.086
200.17
210.406
220.544
230.00327
240.855
250.613
260.0565
270.22
280.955
290.214
30.996
300.676
310.787
320.246
330.295
340.439
350.891
360.153
370.77
380.871
390.879
40.912
400.00695
410.063
420.348
430.864
440.14
450.981
460.674
470.292
480.545
490.869
50.41
500.203
510.711
520.394
530.337
540.809
550.276
560.847
570.982
580.598
590.491
60.313
600.292
610.112
620.225
630.959
640.855
650.055
660.00947
670.341
680.19
690.436
70.0472
700.134
710.484
720.138
730.139
740.103
750.00138
760.653
770.964
780.0187
790.0186
80.792
800.0473
810.167
820.0837
830.113
840.143
850.0437
860.798
870.0638
880.444
890.404
90.0648
900.593
910.0146
920.0753
930.774
940.0751
950.00291
960.329
970.687
980.877
990.224



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12328


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0100599 (Hep-G2 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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