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{{f5samples
{{f5samples
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Line 35: Line 41:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep3.CNhs12333.10823-111C4.hg19.ctss.bed.gz
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/B%2520lymphoblastoid%2520cell%2520line%253a%2520GM12878%2520ENCODE%252c%2520biol_rep3.CNhs12333.10823-111C4.hg38.nobarcode.bam
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|id=FF:10823-111C4
|id=FF:10823-111C4
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|is_obsolete=
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|name=B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3
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Line 42: Line 60:
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Line 57: Line 78:
|rna_weight_ug=35.347
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Line 69: Line 91:
|sample_ethnicity=
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|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.76857074352508e-278!GO:0043227;membrane-bound organelle;3.69786069478295e-233!GO:0043231;intracellular membrane-bound organelle;1.00884902853795e-232!GO:0043226;organelle;9.95552307287824e-229!GO:0043229;intracellular organelle;8.45410604405785e-228!GO:0005737;cytoplasm;1.67446210394911e-168!GO:0044422;organelle part;1.04111525780962e-164!GO:0044446;intracellular organelle part;6.79915337870459e-163!GO:0005634;nucleus;7.23620141184493e-129!GO:0032991;macromolecular complex;1.87727973866236e-124!GO:0044237;cellular metabolic process;7.84323667302407e-114!GO:0044238;primary metabolic process;1.50069279504815e-111!GO:0044444;cytoplasmic part;1.74289337598101e-107!GO:0043170;macromolecule metabolic process;3.72956800736387e-107!GO:0044428;nuclear part;1.18024687160989e-106!GO:0030529;ribonucleoprotein complex;7.7307267263896e-104!GO:0003723;RNA binding;9.86368966857138e-96!GO:0043233;organelle lumen;2.42875062660933e-93!GO:0031974;membrane-enclosed lumen;2.42875062660933e-93!GO:0005739;mitochondrion;2.22963036994875e-75!GO:0043283;biopolymer metabolic process;2.27664969129155e-75!GO:0005515;protein binding;9.61593199456908e-75!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.78844045720287e-74!GO:0006396;RNA processing;1.99113901542913e-69!GO:0010467;gene expression;2.20254696602154e-68!GO:0043234;protein complex;4.9093038249514e-63!GO:0006412;translation;5.39774637704386e-63!GO:0031981;nuclear lumen;4.81891876580597e-62!GO:0005840;ribosome;1.20962657153581e-55!GO:0016071;mRNA metabolic process;9.81415781915374e-55!GO:0044429;mitochondrial part;9.24611105961248e-53!GO:0006259;DNA metabolic process;4.81177116916574e-52!GO:0031967;organelle envelope;6.87458356735528e-50!GO:0031975;envelope;1.87630786384705e-49!GO:0003676;nucleic acid binding;1.57723780826007e-48!GO:0008380;RNA splicing;1.07151600973586e-47!GO:0003735;structural constituent of ribosome;1.17275002667061e-47!GO:0019538;protein metabolic process;2.46524446478446e-47!GO:0006397;mRNA processing;9.05145264953624e-47!GO:0006996;organelle organization and biogenesis;1.40169533062838e-45!GO:0016043;cellular component organization and biogenesis;1.19196374259429e-44!GO:0031090;organelle membrane;3.90794639424542e-44!GO:0044249;cellular biosynthetic process;1.59419790412401e-43!GO:0044267;cellular protein metabolic process;1.56094429408227e-42!GO:0009059;macromolecule biosynthetic process;2.21066286552797e-42!GO:0043228;non-membrane-bound organelle;6.47638766685249e-42!GO:0043232;intracellular non-membrane-bound organelle;6.47638766685249e-42!GO:0044260;cellular macromolecule metabolic process;1.64084047282516e-41!GO:0033036;macromolecule localization;6.03476437255573e-41!GO:0009058;biosynthetic process;6.10305890090213e-41!GO:0033279;ribosomal subunit;1.1973669437047e-40!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.54995668357019e-40!GO:0007049;cell cycle;5.06662818210046e-40!GO:0015031;protein transport;3.67617691273202e-39!GO:0005829;cytosol;9.94758473577577e-39!GO:0005654;nucleoplasm;1.39247772310397e-38!GO:0045184;establishment of protein localization;4.66683300394494e-37!GO:0000166;nucleotide binding;9.26782871458329e-37!GO:0008104;protein localization;1.43600398783245e-36!GO:0016070;RNA metabolic process;3.05233094851605e-36!GO:0046907;intracellular transport;4.02721141077915e-36!GO:0005681;spliceosome;4.72959165269296e-36!GO:0065003;macromolecular complex assembly;9.43812533107971e-36!GO:0006974;response to DNA damage stimulus;5.04983971934089e-34!GO:0022402;cell cycle process;1.54368682385026e-32!GO:0005740;mitochondrial envelope;4.86134120639484e-32!GO:0022607;cellular component assembly;6.56346242408811e-31!GO:0005694;chromosome;8.84022797735697e-31!GO:0019866;organelle inner membrane;2.34320184021034e-30!GO:0031966;mitochondrial membrane;6.2530231382391e-30!GO:0006886;intracellular protein transport;8.44144549227529e-30!GO:0000278;mitotic cell cycle;2.28785218010544e-29!GO:0044451;nucleoplasm part;2.8391034130914e-29!GO:0006281;DNA repair;6.28630264257655e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.15161917924956e-28!GO:0005743;mitochondrial inner membrane;6.63067919562258e-28!GO:0044427;chromosomal part;2.74676977513398e-27!GO:0051649;establishment of cellular localization;4.42201045078366e-27!GO:0022403;cell cycle phase;1.23545411508215e-26!GO:0044445;cytosolic part;1.73459945220223e-26!GO:0051641;cellular localization;2.79223180253467e-26!GO:0000087;M phase of mitotic cell cycle;7.91222341004832e-26!GO:0007067;mitosis;1.26219574199484e-25!GO:0032553;ribonucleotide binding;1.88235689052697e-25!GO:0032555;purine ribonucleotide binding;1.88235689052697e-25!GO:0017076;purine nucleotide binding;2.31984620354894e-25!GO:0005730;nucleolus;7.78002298218362e-25!GO:0031980;mitochondrial lumen;3.18973771034879e-24!GO:0005759;mitochondrial matrix;3.18973771034879e-24!GO:0051276;chromosome organization and biogenesis;3.46708902638233e-24!GO:0051301;cell division;5.63449311952122e-24!GO:0000279;M phase;6.17318020345187e-24!GO:0016462;pyrophosphatase activity;7.65287820700385e-24!GO:0017111;nucleoside-triphosphatase activity;8.93767752909639e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.1536132690109e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.53344113224829e-23!GO:0005524;ATP binding;1.60406880819647e-23!GO:0032559;adenyl ribonucleotide binding;6.95766400204708e-23!GO:0030554;adenyl nucleotide binding;1.45541513731529e-22!GO:0009719;response to endogenous stimulus;1.49342438897003e-22!GO:0044455;mitochondrial membrane part;2.47999832489637e-22!GO:0006915;apoptosis;5.91026648109004e-22!GO:0006119;oxidative phosphorylation;5.98303002732023e-22!GO:0012501;programmed cell death;7.22086741864743e-22!GO:0015935;small ribosomal subunit;3.62854527383814e-21!GO:0006260;DNA replication;4.38530558620233e-21!GO:0006512;ubiquitin cycle;6.34015714682153e-21!GO:0044265;cellular macromolecule catabolic process;7.86523257593425e-21!GO:0022618;protein-RNA complex assembly;8.91816595139185e-21!GO:0015934;large ribosomal subunit;1.21578686304434e-20!GO:0016874;ligase activity;1.21578686304434e-20!GO:0008134;transcription factor binding;2.02490728944356e-20!GO:0042254;ribosome biogenesis and assembly;7.34366759319134e-20!GO:0005635;nuclear envelope;4.08334720613619e-19!GO:0008219;cell death;5.3034847923583e-19!GO:0016265;death;5.3034847923583e-19!GO:0043285;biopolymer catabolic process;2.835143088012e-18!GO:0016604;nuclear body;3.04869580510232e-18!GO:0000502;proteasome complex (sensu Eukaryota);4.1482557732962e-18!GO:0000398;nuclear mRNA splicing, via spliceosome;1.02619392896623e-17!GO:0000375;RNA splicing, via transesterification reactions;1.02619392896623e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.02619392896623e-17!GO:0019941;modification-dependent protein catabolic process;1.21506260423597e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.21506260423597e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.58510443118501e-17!GO:0031965;nuclear membrane;1.88047225053796e-17!GO:0016887;ATPase activity;2.12879727182981e-17!GO:0005746;mitochondrial respiratory chain;2.48688637402308e-17!GO:0012505;endomembrane system;2.72264269964374e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.88677138321222e-17!GO:0009057;macromolecule catabolic process;3.2551674137932e-17!GO:0006457;protein folding;4.08106903955681e-17!GO:0044257;cellular protein catabolic process;5.41030222777927e-17!GO:0042623;ATPase activity, coupled;7.24051565094902e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.02710537748183e-16!GO:0005761;mitochondrial ribosome;1.31696819611907e-16!GO:0000313;organellar ribosome;1.31696819611907e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.04914731780832e-16!GO:0008135;translation factor activity, nucleic acid binding;2.67507779378932e-16!GO:0006323;DNA packaging;2.76556272577258e-16!GO:0043412;biopolymer modification;5.42110296829756e-16!GO:0004386;helicase activity;5.59895194345108e-16!GO:0006605;protein targeting;7.0232591526625e-16!GO:0044248;cellular catabolic process;8.53278504734905e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.14714103817394e-15!GO:0003954;NADH dehydrogenase activity;1.14714103817394e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.14714103817394e-15!GO:0044453;nuclear membrane part;1.56362770250338e-15!GO:0051726;regulation of cell cycle;4.03075989528356e-15!GO:0000074;regulation of progression through cell cycle;6.19024445343064e-15!GO:0006913;nucleocytoplasmic transport;1.05360314882975e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.19902062082254e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.28038344591914e-14!GO:0051169;nuclear transport;2.69211673251985e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.79796317123943e-14!GO:0042773;ATP synthesis coupled electron transport;3.79796317123943e-14!GO:0051186;cofactor metabolic process;3.87471224270971e-14!GO:0005643;nuclear pore;4.41857687356103e-14!GO:0003712;transcription cofactor activity;4.62418583916078e-14!GO:0042981;regulation of apoptosis;5.21662014109805e-14!GO:0050794;regulation of cellular process;5.36931697111334e-14!GO:0050657;nucleic acid transport;6.95165595539314e-14!GO:0051236;establishment of RNA localization;6.95165595539314e-14!GO:0050658;RNA transport;6.95165595539314e-14!GO:0006403;RNA localization;8.15556747743376e-14!GO:0006364;rRNA processing;8.92992233549725e-14!GO:0016607;nuclear speck;1.03452731627133e-13!GO:0043067;regulation of programmed cell death;1.0995828889706e-13!GO:0006464;protein modification process;1.21387436375762e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.21675194549279e-13!GO:0045271;respiratory chain complex I;1.21675194549279e-13!GO:0005747;mitochondrial respiratory chain complex I;1.21675194549279e-13!GO:0006399;tRNA metabolic process;1.67620134153066e-13!GO:0016072;rRNA metabolic process;2.160826561037e-13!GO:0043687;post-translational protein modification;2.25679448769031e-13!GO:0000785;chromatin;2.63234202567301e-13!GO:0030163;protein catabolic process;2.82038742447606e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.57711064580781e-13!GO:0008026;ATP-dependent helicase activity;4.36393100112135e-13!GO:0065002;intracellular protein transport across a membrane;6.50798129115133e-13!GO:0006333;chromatin assembly or disassembly;1.25920560230829e-12!GO:0006413;translational initiation;2.77309160786406e-12!GO:0003743;translation initiation factor activity;3.62358457611793e-12!GO:0051028;mRNA transport;4.85984774392133e-12!GO:0006732;coenzyme metabolic process;1.05607541526244e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.06558298628232e-11!GO:0006446;regulation of translational initiation;1.16292192780905e-11!GO:0048770;pigment granule;1.24109194950495e-11!GO:0042470;melanosome;1.24109194950495e-11!GO:0046930;pore complex;1.323311517844e-11!GO:0006261;DNA-dependent DNA replication;1.70975001495842e-11!GO:0003697;single-stranded DNA binding;2.24162610147551e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.71946272635908e-11!GO:0048193;Golgi vesicle transport;2.71946272635908e-11!GO:0016568;chromatin modification;3.01382817388997e-11!GO:0065004;protein-DNA complex assembly;3.07911841836752e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.14429966658398e-11!GO:0051082;unfolded protein binding;4.24801587355046e-11!GO:0016779;nucleotidyltransferase activity;4.76142774375464e-11!GO:0043566;structure-specific DNA binding;5.70597487688706e-11!GO:0019222;regulation of metabolic process;6.4790132462427e-11!GO:0000775;chromosome, pericentric region;7.76908572807305e-11!GO:0005783;endoplasmic reticulum;9.02991225248283e-11!GO:0006366;transcription from RNA polymerase II promoter;1.01945725669966e-10!GO:0009055;electron carrier activity;2.66508813359085e-10!GO:0051246;regulation of protein metabolic process;2.71814205555099e-10!GO:0017038;protein import;2.95528945463651e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.24955481079018e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.24955481079018e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.24955481079018e-10!GO:0030532;small nuclear ribonucleoprotein complex;3.31530269484009e-10!GO:0044432;endoplasmic reticulum part;3.32160998695683e-10!GO:0008639;small protein conjugating enzyme activity;4.04325280758915e-10!GO:0043038;amino acid activation;5.79003372975643e-10!GO:0006418;tRNA aminoacylation for protein translation;5.79003372975643e-10!GO:0043039;tRNA aminoacylation;5.79003372975643e-10!GO:0004842;ubiquitin-protein ligase activity;7.33153379853625e-10!GO:0019787;small conjugating protein ligase activity;1.1132420702284e-09!GO:0009259;ribonucleotide metabolic process;1.26835986689458e-09!GO:0005819;spindle;1.63332133161481e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.29856397027121e-09!GO:0006163;purine nucleotide metabolic process;2.58199094042291e-09!GO:0006461;protein complex assembly;3.13815719291562e-09!GO:0009615;response to virus;4.20650146845499e-09!GO:0003713;transcription coactivator activity;4.30531777910712e-09!GO:0006164;purine nucleotide biosynthetic process;5.02192342622225e-09!GO:0031323;regulation of cellular metabolic process;5.56579589297074e-09!GO:0009260;ribonucleotide biosynthetic process;6.03166861926384e-09!GO:0016740;transferase activity;6.63357668535894e-09!GO:0016563;transcription activator activity;7.44501658989252e-09!GO:0009056;catabolic process;7.9267028647913e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.47038766757394e-09!GO:0007005;mitochondrion organization and biogenesis;8.69927243566103e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.96488214403504e-09!GO:0008094;DNA-dependent ATPase activity;1.01751737283799e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.0688149416135e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.93112262780148e-08!GO:0051188;cofactor biosynthetic process;1.98392679139197e-08!GO:0005839;proteasome core complex (sensu Eukaryota);2.05094471000632e-08!GO:0009150;purine ribonucleotide metabolic process;2.05094471000632e-08!GO:0050789;regulation of biological process;2.28798373874495e-08!GO:0008565;protein transporter activity;2.42674492561589e-08!GO:0015630;microtubule cytoskeleton;2.43967981706329e-08!GO:0006793;phosphorus metabolic process;2.45478996517354e-08!GO:0006796;phosphate metabolic process;2.45478996517354e-08!GO:0005789;endoplasmic reticulum membrane;2.75233223534379e-08!GO:0009060;aerobic respiration;2.7853947128234e-08!GO:0016787;hydrolase activity;3.56018113100627e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.57955051075418e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.97344410927529e-08!GO:0006310;DNA recombination;4.00017200887462e-08!GO:0000245;spliceosome assembly;4.13219061734634e-08!GO:0005813;centrosome;4.26864684538743e-08!GO:0016881;acid-amino acid ligase activity;4.27669068242694e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.30093730292694e-08!GO:0007051;spindle organization and biogenesis;5.42108596675641e-08!GO:0000075;cell cycle checkpoint;5.83334294077899e-08!GO:0005794;Golgi apparatus;7.55976034038634e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.38271957611537e-08!GO:0005657;replication fork;8.77563919605502e-08!GO:0005815;microtubule organizing center;8.98422987302169e-08!GO:0045333;cellular respiration;9.5929788979986e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.00460535677091e-07!GO:0006350;transcription;1.01651779621745e-07!GO:0007059;chromosome segregation;1.08413479800458e-07!GO:0006916;anti-apoptosis;1.1235581025917e-07!GO:0019829;cation-transporting ATPase activity;1.35237402307359e-07!GO:0004298;threonine endopeptidase activity;1.41301456257263e-07!GO:0043069;negative regulation of programmed cell death;1.94000627734812e-07!GO:0006334;nucleosome assembly;2.17477463124468e-07!GO:0043066;negative regulation of apoptosis;2.27397415810564e-07!GO:0006099;tricarboxylic acid cycle;2.55812704888534e-07!GO:0046356;acetyl-CoA catabolic process;2.55812704888534e-07!GO:0009108;coenzyme biosynthetic process;2.56590070511057e-07!GO:0051168;nuclear export;2.56590070511057e-07!GO:0015986;ATP synthesis coupled proton transport;2.73554825517358e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.73554825517358e-07!GO:0006401;RNA catabolic process;3.03049169444903e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.06998098703728e-07!GO:0031497;chromatin assembly;3.33689662396293e-07!GO:0051170;nuclear import;3.37837258223659e-07!GO:0016310;phosphorylation;3.73233732438114e-07!GO:0045259;proton-transporting ATP synthase complex;4.55051612774911e-07!GO:0051325;interphase;4.57065039893199e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.58321786305524e-07!GO:0032446;protein modification by small protein conjugation;4.97279896663351e-07!GO:0003899;DNA-directed RNA polymerase activity;5.83242547806081e-07!GO:0006084;acetyl-CoA metabolic process;5.84232496759793e-07!GO:0051329;interphase of mitotic cell cycle;6.04112485158821e-07!GO:0043065;positive regulation of apoptosis;7.19057034761787e-07!GO:0006606;protein import into nucleus;7.26950742176231e-07!GO:0006302;double-strand break repair;7.61125611125491e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.81950976187261e-07!GO:0010468;regulation of gene expression;8.09713242876723e-07!GO:0003724;RNA helicase activity;8.55750981834542e-07!GO:0016192;vesicle-mediated transport;9.20140413679178e-07!GO:0007088;regulation of mitosis;9.819442338585e-07!GO:0016567;protein ubiquitination;1.06870211750035e-06!GO:0030120;vesicle coat;1.08880047067563e-06!GO:0030662;coated vesicle membrane;1.08880047067563e-06!GO:0048523;negative regulation of cellular process;1.12055909903543e-06!GO:0043068;positive regulation of programmed cell death;1.15861703042445e-06!GO:0016363;nuclear matrix;1.41664395529684e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.62618160475035e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.62618160475035e-06!GO:0051187;cofactor catabolic process;1.64024848656968e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.83762815939496e-06!GO:0019899;enzyme binding;1.90899982372138e-06!GO:0009117;nucleotide metabolic process;1.95139188743224e-06!GO:0009141;nucleoside triphosphate metabolic process;1.95382963073598e-06!GO:0048475;coated membrane;2.17734076826857e-06!GO:0030117;membrane coat;2.17734076826857e-06!GO:0006754;ATP biosynthetic process;2.29562561096331e-06!GO:0006753;nucleoside phosphate metabolic process;2.29562561096331e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32101699658679e-06!GO:0006917;induction of apoptosis;2.7052489671889e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.26699309785069e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.26699309785069e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.53464521579397e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.53464521579397e-06!GO:0005768;endosome;3.6211899439999e-06!GO:0046034;ATP metabolic process;3.71785449372222e-06!GO:0006402;mRNA catabolic process;3.71785449372222e-06!GO:0009109;coenzyme catabolic process;3.94445397164373e-06!GO:0000776;kinetochore;4.22126547931978e-06!GO:0012502;induction of programmed cell death;4.31843626979354e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.46664838088788e-06!GO:0007243;protein kinase cascade;4.8374443817398e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.50134665110486e-06!GO:0044452;nucleolar part;5.51538818024383e-06!GO:0006417;regulation of translation;5.71480671891662e-06!GO:0051052;regulation of DNA metabolic process;7.68972007411574e-06!GO:0005793;ER-Golgi intermediate compartment;7.74230486113436e-06!GO:0006752;group transfer coenzyme metabolic process;7.91812698682123e-06!GO:0043623;cellular protein complex assembly;9.77583739631702e-06!GO:0006613;cotranslational protein targeting to membrane;1.06092283940846e-05!GO:0005667;transcription factor complex;1.28515368707123e-05!GO:0000314;organellar small ribosomal subunit;1.3741922375965e-05!GO:0005763;mitochondrial small ribosomal subunit;1.3741922375965e-05!GO:0004527;exonuclease activity;1.38984051531249e-05!GO:0051427;hormone receptor binding;1.41805767564765e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.55762177053938e-05!GO:0045786;negative regulation of progression through cell cycle;1.62445603695642e-05!GO:0000151;ubiquitin ligase complex;1.70307013796106e-05!GO:0005762;mitochondrial large ribosomal subunit;1.77066569956463e-05!GO:0000315;organellar large ribosomal subunit;1.77066569956463e-05!GO:0005770;late endosome;1.81427485759042e-05!GO:0048522;positive regulation of cellular process;1.88392818856883e-05!GO:0006839;mitochondrial transport;2.10355459820186e-05!GO:0005525;GTP binding;2.40585783945267e-05!GO:0003677;DNA binding;2.59963315614653e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.62629736387246e-05!GO:0003678;DNA helicase activity;2.62650968624579e-05!GO:0007093;mitotic cell cycle checkpoint;2.65211349797521e-05!GO:0008168;methyltransferase activity;2.70688061569813e-05!GO:0003684;damaged DNA binding;2.72499531300044e-05!GO:0048519;negative regulation of biological process;2.83350467301911e-05!GO:0032774;RNA biosynthetic process;2.88358115592203e-05!GO:0035257;nuclear hormone receptor binding;3.00092270659382e-05!GO:0003690;double-stranded DNA binding;3.4179156374288e-05!GO:0043021;ribonucleoprotein binding;3.56852940287435e-05!GO:0004518;nuclease activity;3.59776976436303e-05!GO:0016564;transcription repressor activity;3.77640699683391e-05!GO:0006351;transcription, DNA-dependent;3.80697583385163e-05!GO:0051252;regulation of RNA metabolic process;3.82770455835118e-05!GO:0003924;GTPase activity;4.87298662970106e-05!GO:0005798;Golgi-associated vesicle;4.88040627225631e-05!GO:0008033;tRNA processing;5.54694144426182e-05!GO:0008186;RNA-dependent ATPase activity;5.56357137646435e-05!GO:0009165;nucleotide biosynthetic process;5.58413468402665e-05!GO:0003682;chromatin binding;6.70242549965915e-05!GO:0003729;mRNA binding;7.58574797574343e-05!GO:0031324;negative regulation of cellular metabolic process;7.80886283849178e-05!GO:0031326;regulation of cellular biosynthetic process;7.89445454150196e-05!GO:0003714;transcription corepressor activity;8.37302946652292e-05!GO:0000786;nucleosome;0.000106167006140633!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00011640494292388!GO:0006950;response to stress;0.000129753405256157!GO:0045449;regulation of transcription;0.000132665373806471!GO:0043681;protein import into mitochondrion;0.000134719042393203!GO:0006383;transcription from RNA polymerase III promoter;0.000135824094231808!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000136767534848213!GO:0030880;RNA polymerase complex;0.000137422269041605!GO:0006352;transcription initiation;0.000137984147110328!GO:0016251;general RNA polymerase II transcription factor activity;0.000139660060886653!GO:0065007;biological regulation;0.000140250354669735!GO:0006626;protein targeting to mitochondrion;0.00015211991231988!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000155858855763543!GO:0004004;ATP-dependent RNA helicase activity;0.000171722640129378!GO:0007006;mitochondrial membrane organization and biogenesis;0.000176127417743423!GO:0044440;endosomal part;0.000178955591069254!GO:0010008;endosome membrane;0.000178955591069254!GO:0005048;signal sequence binding;0.000216033189583225!GO:0007052;mitotic spindle organization and biogenesis;0.000219656106226104!GO:0032561;guanyl ribonucleotide binding;0.000219876628620433!GO:0019001;guanyl nucleotide binding;0.000219876628620433!GO:0005885;Arp2/3 protein complex;0.000225734353663039!GO:0030658;transport vesicle membrane;0.000266168653745725!GO:0042770;DNA damage response, signal transduction;0.000266168653745725!GO:0048471;perinuclear region of cytoplasm;0.000270540666119715!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00027480028863166!GO:0015399;primary active transmembrane transporter activity;0.00027480028863166!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000292774855831712!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000299348394637186!GO:0000428;DNA-directed RNA polymerase complex;0.000299348394637186!GO:0007010;cytoskeleton organization and biogenesis;0.000301269402996363!GO:0031072;heat shock protein binding;0.000320278258655377!GO:0043488;regulation of mRNA stability;0.000321918438751577!GO:0043487;regulation of RNA stability;0.000321918438751577!GO:0006414;translational elongation;0.000338660350722536!GO:0032508;DNA duplex unwinding;0.000343505543192553!GO:0032392;DNA geometric change;0.000343505543192553!GO:0005684;U2-dependent spliceosome;0.000348657146472806!GO:0008632;apoptotic program;0.000365316139640338!GO:0006612;protein targeting to membrane;0.000375759181294148!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000383037553293878!GO:0065009;regulation of a molecular function;0.00040406598858809!GO:0016853;isomerase activity;0.000419967973617208!GO:0006611;protein export from nucleus;0.000425696283845108!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000428058063970205!GO:0000228;nuclear chromosome;0.000429112283075856!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000444113543351773!GO:0000819;sister chromatid segregation;0.000458601154757569!GO:0005741;mitochondrial outer membrane;0.000503460534980839!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000513564423777688!GO:0003725;double-stranded RNA binding;0.000541206922204925!GO:0031968;organelle outer membrane;0.000555865634741601!GO:0000070;mitotic sister chromatid segregation;0.00057856445139232!GO:0004674;protein serine/threonine kinase activity;0.000609788492558272!GO:0006268;DNA unwinding during replication;0.000633468870175177!GO:0032200;telomere organization and biogenesis;0.000633468870175177!GO:0000723;telomere maintenance;0.000633468870175177!GO:0019867;outer membrane;0.000669882047796126!GO:0000082;G1/S transition of mitotic cell cycle;0.000687762354761833!GO:0030660;Golgi-associated vesicle membrane;0.000687762354761833!GO:0009889;regulation of biosynthetic process;0.000703702149227532!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000754366648703524!GO:0006270;DNA replication initiation;0.000759222346211205!GO:0031970;organelle envelope lumen;0.000759222346211205!GO:0046483;heterocycle metabolic process;0.000766201190313558!GO:0006405;RNA export from nucleus;0.000789412688814793!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000835426589096369!GO:0044431;Golgi apparatus part;0.000897283229759444!GO:0043596;nuclear replication fork;0.000908528427135665!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.000908528427135665!GO:0048500;signal recognition particle;0.000915494887881139!GO:0000059;protein import into nucleus, docking;0.000999791470604865!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00101467999885762!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00101467999885762!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00101467999885762!GO:0009892;negative regulation of metabolic process;0.00107117650296367!GO:0005758;mitochondrial intermembrane space;0.00107814196789608!GO:0000725;recombinational repair;0.00108647813416049!GO:0000724;double-strand break repair via homologous recombination;0.00108647813416049!GO:0004532;exoribonuclease activity;0.00108647813416049!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00108647813416049!GO:0005876;spindle microtubule;0.00116503603684422!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00116503603684422!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00116503603684422!GO:0008139;nuclear localization sequence binding;0.00122816314802861!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00131455091227702!GO:0000922;spindle pole;0.00132975783280564!GO:0004003;ATP-dependent DNA helicase activity;0.00133681110955621!GO:0006891;intra-Golgi vesicle-mediated transport;0.00139424481178877!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00146538688838152!GO:0048518;positive regulation of biological process;0.00152628269599703!GO:0006818;hydrogen transport;0.00157828346371434!GO:0016859;cis-trans isomerase activity;0.00167451385429859!GO:0005637;nuclear inner membrane;0.00169389352780124!GO:0008408;3'-5' exonuclease activity;0.00170401705410314!GO:0035258;steroid hormone receptor binding;0.00174217374877265!GO:0009967;positive regulation of signal transduction;0.00174407802090663!GO:0015992;proton transport;0.00177663996631136!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00178567501024876!GO:0016481;negative regulation of transcription;0.00180783127909391!GO:0000049;tRNA binding;0.00181132351251074!GO:0003711;transcription elongation regulator activity;0.00186769604580276!GO:0031124;mRNA 3'-end processing;0.00190783633752253!GO:0005769;early endosome;0.00191018188821694!GO:0045454;cell redox homeostasis;0.00191319970436626!GO:0009451;RNA modification;0.00198344526662829!GO:0008312;7S RNA binding;0.00198385249552821!GO:0006091;generation of precursor metabolites and energy;0.00203588026415486!GO:0006520;amino acid metabolic process;0.00206400746312612!GO:0007017;microtubule-based process;0.00211678415060045!GO:0006355;regulation of transcription, DNA-dependent;0.00216966912856591!GO:0047485;protein N-terminus binding;0.00224828504403511!GO:0006338;chromatin remodeling;0.00231685275971014!GO:0051920;peroxiredoxin activity;0.00231685275971014!GO:0022890;inorganic cation transmembrane transporter activity;0.00238591120856304!GO:0016491;oxidoreductase activity;0.00238718315101084!GO:0006289;nucleotide-excision repair;0.00246504873326481!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00247821062980229!GO:0030521;androgen receptor signaling pathway;0.00251367451630663!GO:0006595;polyamine metabolic process;0.0025992739453474!GO:0033673;negative regulation of kinase activity;0.00268258390322995!GO:0006469;negative regulation of protein kinase activity;0.00268258390322995!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0027404019430065!GO:0045047;protein targeting to ER;0.0027404019430065!GO:0000793;condensed chromosome;0.00279780426105402!GO:0046822;regulation of nucleocytoplasmic transport;0.00284143273229273!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00285178204090395!GO:0045941;positive regulation of transcription;0.00295448797697068!GO:0003702;RNA polymerase II transcription factor activity;0.00298250738498515!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0030379229127637!GO:0009124;nucleoside monophosphate biosynthetic process;0.0030379229127637!GO:0009123;nucleoside monophosphate metabolic process;0.0030379229127637!GO:0051348;negative regulation of transferase activity;0.00304663890590939!GO:0000781;chromosome, telomeric region;0.00315816073810772!GO:0043492;ATPase activity, coupled to movement of substances;0.00318367106134758!GO:0030518;steroid hormone receptor signaling pathway;0.00330662332510311!GO:0051539;4 iron, 4 sulfur cluster binding;0.00334036257336206!GO:0016791;phosphoric monoester hydrolase activity;0.00334068618996457!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00334068618996457!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00334068618996457!GO:0000323;lytic vacuole;0.00334277248183527!GO:0005764;lysosome;0.00334277248183527!GO:0009112;nucleobase metabolic process;0.00336807045564444!GO:0016126;sterol biosynthetic process;0.00344446053697109!GO:0006284;base-excision repair;0.00346043829799274!GO:0051223;regulation of protein transport;0.0035363208641366!GO:0042393;histone binding;0.00357212502132781!GO:0008234;cysteine-type peptidase activity;0.00364139740831103!GO:0006275;regulation of DNA replication;0.00370250391382484!GO:0030134;ER to Golgi transport vesicle;0.00371900254681025!GO:0030867;rough endoplasmic reticulum membrane;0.00383410989836421!GO:0016584;nucleosome positioning;0.00387461854801161!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00395191662597768!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00395191662597768!GO:0015002;heme-copper terminal oxidase activity;0.00395191662597768!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00395191662597768!GO:0004129;cytochrome-c oxidase activity;0.00395191662597768!GO:0032259;methylation;0.00397309779706062!GO:0000178;exosome (RNase complex);0.00407769938713356!GO:0048468;cell development;0.00408331922375167!GO:0030127;COPII vesicle coat;0.00415098489842435!GO:0012507;ER to Golgi transport vesicle membrane;0.00415098489842435!GO:0043601;nuclear replisome;0.00427840390713836!GO:0030894;replisome;0.00427840390713836!GO:0019752;carboxylic acid metabolic process;0.00435810864075347!GO:0006144;purine base metabolic process;0.00439766864849514!GO:0008654;phospholipid biosynthetic process;0.00449090060955873!GO:0000339;RNA cap binding;0.00453406109086344!GO:0005773;vacuole;0.00454683514523495!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0046644775878293!GO:0051092;activation of NF-kappaB transcription factor;0.00522017268177653!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00527657954059682!GO:0006082;organic acid metabolic process;0.00529598981724678!GO:0031123;RNA 3'-end processing;0.00534731715030852!GO:0003887;DNA-directed DNA polymerase activity;0.00537958753122167!GO:0008022;protein C-terminus binding;0.00539827159598518!GO:0015631;tubulin binding;0.00552240254458752!GO:0031570;DNA integrity checkpoint;0.00552374824302531!GO:0042802;identical protein binding;0.00552374824302531!GO:0016197;endosome transport;0.00568858197306491!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00580641504453039!GO:0009116;nucleoside metabolic process;0.005835034418723!GO:0031252;leading edge;0.00591358453956089!GO:0051053;negative regulation of DNA metabolic process;0.00595416786075678!GO:0046966;thyroid hormone receptor binding;0.00600992242743494!GO:0030384;phosphoinositide metabolic process;0.00605395061388812!GO:0022411;cellular component disassembly;0.00606068483216634!GO:0000152;nuclear ubiquitin ligase complex;0.00629319932971199!GO:0051789;response to protein stimulus;0.00629774698862857!GO:0006986;response to unfolded protein;0.00629774698862857!GO:0000175;3'-5'-exoribonuclease activity;0.00636428285241742!GO:0008629;induction of apoptosis by intracellular signals;0.00639586452003908!GO:0005669;transcription factor TFIID complex;0.00661119528324962!GO:0030118;clathrin coat;0.00672889478636936!GO:0006007;glucose catabolic process;0.00674040645450447!GO:0006695;cholesterol biosynthetic process;0.00675670387604886!GO:0051087;chaperone binding;0.00697502073772472!GO:0009161;ribonucleoside monophosphate metabolic process;0.00700750977854496!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00700750977854496!GO:0043022;ribosome binding;0.00709473452367244!GO:0044450;microtubule organizing center part;0.00709473452367244!GO:0006376;mRNA splice site selection;0.00719015572123318!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00719015572123318!GO:0018193;peptidyl-amino acid modification;0.00760258067593352!GO:0045893;positive regulation of transcription, DNA-dependent;0.00760258067593352!GO:0030133;transport vesicle;0.00764610762638741!GO:0030036;actin cytoskeleton organization and biogenesis;0.00773173633148044!GO:0022415;viral reproductive process;0.00790221401166314!GO:0000209;protein polyubiquitination;0.00797963413403358!GO:0005663;DNA replication factor C complex;0.0082678752511054!GO:0044454;nuclear chromosome part;0.00833113704597048!GO:0007242;intracellular signaling cascade;0.00841260695659288!GO:0003746;translation elongation factor activity;0.00872587835943069!GO:0016272;prefoldin complex;0.00882281442559895!GO:0000139;Golgi membrane;0.00909946979019984!GO:0005832;chaperonin-containing T-complex;0.00922269123885196!GO:0051540;metal cluster binding;0.00939019617654382!GO:0051536;iron-sulfur cluster binding;0.00939019617654382!GO:0051098;regulation of binding;0.00956403764243309!GO:0008624;induction of apoptosis by extracellular signals;0.00964984422570051!GO:0030663;COPI coated vesicle membrane;0.00967985255119101!GO:0030126;COPI vesicle coat;0.00967985255119101!GO:0008637;apoptotic mitochondrial changes;0.00978970811648208!GO:0008047;enzyme activator activity;0.00999020729209664!GO:0043414;biopolymer methylation;0.0103731115250815!GO:0009303;rRNA transcription;0.0104617350803933!GO:0008276;protein methyltransferase activity;0.0104617350803933!GO:0051656;establishment of organelle localization;0.0109953836319103!GO:0042613;MHC class II protein complex;0.0110265700196345!GO:0007004;telomere maintenance via telomerase;0.0112300244953229!GO:0032984;macromolecular complex disassembly;0.0114803883326231!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0118408872302858!GO:0006400;tRNA modification;0.0120612688779591!GO:0031902;late endosome membrane;0.01209578426596!GO:0006650;glycerophospholipid metabolic process;0.0121846454262946!GO:0005788;endoplasmic reticulum lumen;0.0122312756136321!GO:0009893;positive regulation of metabolic process;0.0123192134360244!GO:0000726;non-recombinational repair;0.0123192134360244!GO:0031577;spindle checkpoint;0.0126565896503876!GO:0006378;mRNA polyadenylation;0.012730040075937!GO:0000910;cytokinesis;0.0127380743546603!GO:0007264;small GTPase mediated signal transduction;0.0127931677057816!GO:0015980;energy derivation by oxidation of organic compounds;0.0132670396517844!GO:0001824;blastocyst development;0.0134718668388202!GO:0005874;microtubule;0.0134718668388202!GO:0051090;regulation of transcription factor activity;0.0135372369258662!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0135379144133489!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0135500451941283!GO:0007050;cell cycle arrest;0.0139919722898653!GO:0046112;nucleobase biosynthetic process;0.0139919722898653!GO:0019843;rRNA binding;0.014345434646846!GO:0031625;ubiquitin protein ligase binding;0.0143598215227044!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.014378810953518!GO:0004721;phosphoprotein phosphatase activity;0.0143953726929906!GO:0016788;hydrolase activity, acting on ester bonds;0.0144210242346764!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0145861250328779!GO:0043624;cellular protein complex disassembly;0.014975157124528!GO:0030137;COPI-coated vesicle;0.0150976041093631!GO:0051101;regulation of DNA binding;0.0154460503135135!GO:0050662;coenzyme binding;0.0154700809786335!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0157965453635336!GO:0046489;phosphoinositide biosynthetic process;0.0158346293491253!GO:0004576;oligosaccharyl transferase activity;0.0158346293491253!GO:0033367;protein localization in mast cell secretory granule;0.0158346293491253!GO:0033365;protein localization in organelle;0.0158346293491253!GO:0033371;T cell secretory granule organization and biogenesis;0.0158346293491253!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0158346293491253!GO:0033375;protease localization in T cell secretory granule;0.0158346293491253!GO:0042629;mast cell granule;0.0158346293491253!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0158346293491253!GO:0033364;mast cell secretory granule organization and biogenesis;0.0158346293491253!GO:0033380;granzyme B localization in T cell secretory granule;0.0158346293491253!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0158346293491253!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0158346293491253!GO:0033368;protease localization in mast cell secretory granule;0.0158346293491253!GO:0033366;protein localization in secretory granule;0.0158346293491253!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0158346293491253!GO:0033374;protein localization in T cell secretory granule;0.0158346293491253!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0159407918823015!GO:0008250;oligosaccharyl transferase complex;0.0159407918823015!GO:0031325;positive regulation of cellular metabolic process;0.0163023135603409!GO:0045045;secretory pathway;0.0163643854422472!GO:0000077;DNA damage checkpoint;0.0165459140139329!GO:0043241;protein complex disassembly;0.0170127416587281!GO:0033116;ER-Golgi intermediate compartment membrane;0.0170619456412538!GO:0006278;RNA-dependent DNA replication;0.0178033287388483!GO:0042113;B cell activation;0.0178176903467188!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0192200086999396!GO:0000118;histone deacetylase complex;0.0192258797207641!GO:0008538;proteasome activator activity;0.019263885727834!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0199846194874558!GO:0019904;protein domain specific binding;0.0201374511467896!GO:0008180;signalosome;0.0202355706402153!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0206350920085289!GO:0004540;ribonuclease activity;0.0206765986449415!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0212180083006396!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0212180083006396!GO:0009126;purine nucleoside monophosphate metabolic process;0.0212180083006396!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0212180083006396!GO:0000287;magnesium ion binding;0.0215690270273115!GO:0005791;rough endoplasmic reticulum;0.0219934866000721!GO:0044438;microbody part;0.0219936508007294!GO:0044439;peroxisomal part;0.0219936508007294!GO:0000792;heterochromatin;0.0224065893284933!GO:0032940;secretion by cell;0.0224613514520546!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0225264478111731!GO:0043621;protein self-association;0.0228081268598022!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0229034909985857!GO:0000018;regulation of DNA recombination;0.0232021600125019!GO:0008156;negative regulation of DNA replication;0.0233309709069998!GO:0046649;lymphocyte activation;0.0234025203772316!GO:0000738;DNA catabolic process, exonucleolytic;0.0234690866192628!GO:0006096;glycolysis;0.0234690866192628!GO:0000119;mediator complex;0.0235731825739798!GO:0019783;small conjugating protein-specific protease activity;0.0235796010405854!GO:0007265;Ras protein signal transduction;0.0238734913543987!GO:0050681;androgen receptor binding;0.0248655166613217!GO:0016311;dephosphorylation;0.0250249618805888!GO:0006519;amino acid and derivative metabolic process;0.0257660103041944!GO:0006596;polyamine biosynthetic process;0.0259023421154834!GO:0016407;acetyltransferase activity;0.026105312196715!GO:0032404;mismatch repair complex binding;0.026350825737812!GO:0005732;small nucleolar ribonucleoprotein complex;0.0264267848064189!GO:0050790;regulation of catalytic activity;0.0264267848064189!GO:0008287;protein serine/threonine phosphatase complex;0.0269706885263707!GO:0004536;deoxyribonuclease activity;0.0269706885263707!GO:0030029;actin filament-based process;0.0269706885263707!GO:0004843;ubiquitin-specific protease activity;0.0270420521270247!GO:0032039;integrator complex;0.027135925230881!GO:0030125;clathrin vesicle coat;0.0271627080289866!GO:0030665;clathrin coated vesicle membrane;0.0271627080289866!GO:0048487;beta-tubulin binding;0.0271627080289866!GO:0005096;GTPase activator activity;0.0271885084122467!GO:0046365;monosaccharide catabolic process;0.0279645305079841!GO:0030433;ER-associated protein catabolic process;0.0281802997477384!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0281802997477384!GO:0004177;aminopeptidase activity;0.0281887597182533!GO:0045892;negative regulation of transcription, DNA-dependent;0.0285121087547771!GO:0006406;mRNA export from nucleus;0.028560279559151!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0288602372891904!GO:0000096;sulfur amino acid metabolic process;0.0288677684241764!GO:0008270;zinc ion binding;0.028932041524537!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0290034028774304!GO:0008097;5S rRNA binding;0.0290455673383938!GO:0033170;DNA-protein loading ATPase activity;0.0291516638336214!GO:0003689;DNA clamp loader activity;0.0291516638336214!GO:0051235;maintenance of localization;0.0297045005156508!GO:0004448;isocitrate dehydrogenase activity;0.0297045005156508!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0297045005156508!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0297045005156508!GO:0006308;DNA catabolic process;0.0298868302866541!GO:0030695;GTPase regulator activity;0.0301262352974249!GO:0043284;biopolymer biosynthetic process;0.0301262352974249!GO:0046474;glycerophospholipid biosynthetic process;0.030170246074299!GO:0030140;trans-Golgi network transport vesicle;0.030170246074299!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0305455022966295!GO:0045039;protein import into mitochondrial inner membrane;0.0305455022966295!GO:0030522;intracellular receptor-mediated signaling pathway;0.0306983092765499!GO:0031371;ubiquitin conjugating enzyme complex;0.0309491153478328!GO:0046426;negative regulation of JAK-STAT cascade;0.0310446391043425!GO:0008320;protein transmembrane transporter activity;0.0313147304252641!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0315245528852999!GO:0031903;microbody membrane;0.0320380785157146!GO:0005778;peroxisomal membrane;0.0320380785157146!GO:0001891;phagocytic cup;0.0321322858453548!GO:0022884;macromolecule transmembrane transporter activity;0.0321643926521754!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0321643926521754!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0323108093445208!GO:0006730;one-carbon compound metabolic process;0.0323108093445208!GO:0035267;NuA4 histone acetyltransferase complex;0.0326108093712619!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0331984045646688!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0331984045646688!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0331984045646688!GO:0030262;apoptotic nuclear changes;0.0337284896104571!GO:0005092;GDP-dissociation inhibitor activity;0.034273921864148!GO:0032405;MutLalpha complex binding;0.0343023994746993!GO:0030508;thiol-disulfide exchange intermediate activity;0.0359476450984053!GO:0006354;RNA elongation;0.0363730753697752!GO:0016301;kinase activity;0.0366869430027685!GO:0008017;microtubule binding;0.0366869430027685!GO:0008537;proteasome activator complex;0.0370340503472128!GO:0051640;organelle localization;0.0371468426796301!GO:0016605;PML body;0.0374350029718109!GO:0031647;regulation of protein stability;0.0377005797237854!GO:0004722;protein serine/threonine phosphatase activity;0.0383146473899618!GO:0018196;peptidyl-asparagine modification;0.0383146473899618!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0383146473899618!GO:0051338;regulation of transferase activity;0.0383642624635585!GO:0005652;nuclear lamina;0.0386852151502244!GO:0004221;ubiquitin thiolesterase activity;0.0393298091158923!GO:0050851;antigen receptor-mediated signaling pathway;0.0393427143827839!GO:0042026;protein refolding;0.0401460613109438!GO:0005680;anaphase-promoting complex;0.0402925670416542!GO:0051297;centrosome organization and biogenesis;0.0405796950320109!GO:0031023;microtubule organizing center organization and biogenesis;0.0405796950320109!GO:0009081;branched chain family amino acid metabolic process;0.0407552978359656!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0407552978359656!GO:0001832;blastocyst growth;0.0407552978359656!GO:0050178;phenylpyruvate tautomerase activity;0.040830722821673!GO:0045815;positive regulation of gene expression, epigenetic;0.0413317694821335!GO:0005689;U12-dependent spliceosome;0.0413497854004686!GO:0043549;regulation of kinase activity;0.0413707504458702!GO:0006301;postreplication repair;0.0418936271346143!GO:0015036;disulfide oxidoreductase activity;0.0428229020627442!GO:0030176;integral to endoplasmic reticulum membrane;0.0429432644779458!GO:0046128;purine ribonucleoside metabolic process;0.043127003059082!GO:0042278;purine nucleoside metabolic process;0.043127003059082!GO:0019320;hexose catabolic process;0.0431981814108705!GO:0043130;ubiquitin binding;0.0431981814108705!GO:0032182;small conjugating protein binding;0.0431981814108705!GO:0008630;DNA damage response, signal transduction resulting in induction of apoptosis;0.0438441167177541!GO:0016790;thiolester hydrolase activity;0.0439683674517469!GO:0051881;regulation of mitochondrial membrane potential;0.0443620239615474!GO:0005869;dynactin complex;0.0445048400555758!GO:0004659;prenyltransferase activity;0.0446693553968028!GO:0006767;water-soluble vitamin metabolic process;0.0447033570070371!GO:0042054;histone methyltransferase activity;0.0448290318470107!GO:0007098;centrosome cycle;0.0448986026681786!GO:0006984;ER-nuclear signaling pathway;0.0451332915321562!GO:0046164;alcohol catabolic process;0.0456005194832156!GO:0006778;porphyrin metabolic process;0.0456005194832156!GO:0033013;tetrapyrrole metabolic process;0.0456005194832156!GO:0006607;NLS-bearing substrate import into nucleus;0.045611247659525!GO:0030119;AP-type membrane coat adaptor complex;0.0459117570440595!GO:0043189;H4/H2A histone acetyltransferase complex;0.046287339442631!GO:0031988;membrane-bound vesicle;0.0465349627820063!GO:0000123;histone acetyltransferase complex;0.0473112272284436!GO:0030261;chromosome condensation;0.047982934100661!GO:0000930;gamma-tubulin complex;0.0480911112951122!GO:0000086;G2/M transition of mitotic cell cycle;0.0482727573904138!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0482727573904138!GO:0012510;trans-Golgi network transport vesicle membrane;0.0482727573904138!GO:0043631;RNA polyadenylation;0.0487051544181587!GO:0005784;translocon complex;0.0488465639134826!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0490789940290652!GO:0004402;histone acetyltransferase activity;0.0493381612353295!GO:0004468;lysine N-acetyltransferase activity;0.0493381612353295!GO:0008213;protein amino acid alkylation;0.0495274974818889!GO:0006479;protein amino acid methylation;0.0495274974818889
|sample_id=10823
|sample_id=10823
|sample_note=
|sample_note=
|sample_sex=female
|sample_sex=female
|sample_species=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_strain=
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=POU2F1..3:2.37041826617;POU5F1:2.19357996837;HOXA9_MEIS1:1.9820005443;DMAP1_NCOR{1,2}_SMARC:1.93753310364;NFKB1_REL_RELA:1.88454308597;PAX6:1.83815824765;E2F1..5:1.66746562237;NFY{A,B,C}:1.61773653537;PDX1:1.61324370331;MYB:1.60991349116;IRF7:1.57365992701;ELF1,2,4:1.5678364964;IRF1,2:1.51029513615;ELK1,4_GABP{A,B1}:1.50927736904;AIRE:1.49872807127;NKX6-1,2:1.40257422802;PITX1..3:1.34016609735;TOPORS:1.27979895404;SPI1:1.09819733832;YY1:1.09624363262;VSX1,2:1.09189264097;HIF1A:1.00233337086;RUNX1..3:0.958333536542;FOXA2:0.938267184563;CDX1,2,4:0.932634597613;NRF1:0.917827322361;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.874782217273;PAX3,7:0.867746317015;PAX8:0.834739262651;ZBTB16:0.747432493176;SPIB:0.743488815208;ZNF143:0.740075913508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.731695537187;POU1F1:0.679921587167;RBPJ:0.675027664415;AHR_ARNT_ARNT2:0.645625869143;ETS1,2:0.643138666976;OCT4_SOX2{dimer}:0.616760528987;MYOD1:0.564347942058;EVI1:0.517866932713;FOXP3:0.51314630871;BREu{core}:0.483195567593;HNF4A_NR2F1,2:0.481010213497;LMO2:0.45816833409;POU3F1..4:0.451495795201;SNAI1..3:0.445885606129;NR5A1,2:0.441842885738;GFI1:0.425449336341;FOXP1:0.420256678772;SPZ1:0.416396655147;NKX2-2,8:0.413254415911;ZNF384:0.398427782303;ZEB1:0.393141169649;CUX2:0.367008262589;ESRRA:0.34488416334;RORA:0.341468289947;PBX1:0.327464552073;HNF1A:0.318475029335;ARID5B:0.299849604422;FOXN1:0.283588409682;CDC5L:0.219548502348;HSF1,2:0.217125661908;NANOG{mouse}:0.212561126276;GATA6:0.185705424925;STAT1,3:0.181699498951;RFX2..5_RFXANK_RFXAP:0.181529364036;ALX4:0.175426672194;FOX{F1,F2,J1}:0.172798725348;SOX{8,9,10}:0.156916122192;ATF5_CREB3:0.11407071491;TGIF1:0.0970735125656;ESR1:0.0885747640974;CRX:0.0790686360018;IKZF2:0.078620757849;PRRX1,2:0.0757602491704;LHX3,4:0.0731297292607;TFDP1:0.0592301017446;RXRA_VDR{dimer}:0.0524905420829;PAX2:0.0243553982515;NKX3-2:-0.00946612243698;HES1:-0.0103882197375;TP53:-0.0248525305369;CREB1:-0.0915954864285;PRDM1:-0.112168379044;bHLH_family:-0.141380649767;NKX2-3_NKX2-5:-0.145715604126;FOXQ1:-0.146672303626;EBF1:-0.152619767882;SOX5:-0.171044940095;NR1H4:-0.171457310599;PAX4:-0.202124160018;NFE2:-0.229810458963;ATF4:-0.230366473365;DBP:-0.237831449627;TLX2:-0.241852673121;MEF2{A,B,C,D}:-0.249252057959;LEF1_TCF7_TCF7L1,2:-0.278211047761;BPTF:-0.296763365785;HAND1,2:-0.304390242869;SRF:-0.334628178397;EP300:-0.390234042756;ALX1:-0.391391531104;GATA4:-0.413959866104;HOX{A5,B5}:-0.418150119657;ADNP_IRX_SIX_ZHX:-0.43834722201;HBP1_HMGB_SSRP1_UBTF:-0.442831407362;HOX{A4,D4}:-0.446136280294;NFATC1..3:-0.469194168639;FOS_FOS{B,L1}_JUN{B,D}:-0.47580072585;RXR{A,B,G}:-0.487865268285;TEF:-0.493257045261;AR:-0.505828926121;GFI1B:-0.511146385668;SOX17:-0.519680026523;NR6A1:-0.550791796542;SOX2:-0.560507912013;KLF4:-0.584431356653;FOSL2:-0.58658511533;NKX2-1,4:-0.592512316824;ONECUT1,2:-0.603083014679;BACH2:-0.606519400499;HMGA1,2:-0.618924271622;ZFP161:-0.639488788223;UFEwm:-0.640450560739;EN1,2:-0.64289009084;STAT2,4,6:-0.657564393;IKZF1:-0.682032376795;RREB1:-0.685940158176;CEBPA,B_DDIT3:-0.688195997655;NFIL3:-0.699361114087;GLI1..3:-0.734260517816;MZF1:-0.739685154939;TFAP4:-0.74098921276;SMAD1..7,9:-0.754455638358;MYBL2:-0.766991593172;STAT5{A,B}:-0.782479505782;GCM1,2:-0.784829374914;HOX{A6,A7,B6,B7}:-0.803687033526;NKX3-1:-0.818993250626;PPARG:-0.82056527378;PAX1,9:-0.826713516328;SREBF1,2:-0.836657185559;ATF2:-0.843870436334;HLF:-0.846440132248;NHLH1,2:-0.861330245316;TAL1_TCF{3,4,12}:-0.914148726196;ZNF148:-0.923810945583;MYFfamily:-0.924009766946;FOXD3:-0.928959043952;ZNF423:-0.957188083363;MTF1:-0.963145026819;EGR1..3:-0.977760003256;ZIC1..3:-0.992846577728;RFX1:-1.01291870628;XCPE1{core}:-1.03851626774;FOXO1,3,4:-1.0471811307;MTE{core}:-1.06487027425;TBP:-1.08372042353;HIC1:-1.08986749596;JUN:-1.1058763335;T:-1.12366012248;REST:-1.13330000012;NFIX:-1.14587520621;PAX5:-1.15753204538;GTF2I:-1.18459570894;NFE2L2:-1.21223264823;XBP1:-1.23331964364;NFE2L1:-1.24787716658;MAFB:-1.27537639605;MED-1{core}:-1.2857994497;FOXM1:-1.2922012403;NANOG:-1.30990483605;TFAP2{A,C}:-1.32150589921;PATZ1:-1.34822630122;TFCP2:-1.35779454385;ATF6:-1.37025780055;GTF2A1,2:-1.38000243687;HMX1:-1.388945926;GZF1:-1.43654812128;TBX4,5:-1.46044857331;MAZ:-1.47340187805;ZNF238:-1.47592322241;TLX1..3_NFIC{dimer}:-1.48167347747;ZBTB6:-1.63966328517;POU6F1:-1.67507898292;TEAD1:-1.68001545219;NR3C1:-1.68460187491;FOX{D1,D2}:-1.72871992526;SP1:-1.81297752058;TFAP2B:-1.90774420056;FOX{I1,J2}:-2.13253849766;FOXL1:-2.4673002322
|top_motifs=POU2F1..3:2.37041826617;POU5F1:2.19357996837;HOXA9_MEIS1:1.9820005443;DMAP1_NCOR{1,2}_SMARC:1.93753310364;NFKB1_REL_RELA:1.88454308597;PAX6:1.83815824765;E2F1..5:1.66746562237;NFY{A,B,C}:1.61773653537;PDX1:1.61324370331;MYB:1.60991349116;IRF7:1.57365992701;ELF1,2,4:1.5678364964;IRF1,2:1.51029513615;ELK1,4_GABP{A,B1}:1.50927736904;AIRE:1.49872807127;NKX6-1,2:1.40257422802;PITX1..3:1.34016609735;TOPORS:1.27979895404;SPI1:1.09819733832;YY1:1.09624363262;VSX1,2:1.09189264097;HIF1A:1.00233337086;RUNX1..3:0.958333536542;FOXA2:0.938267184563;CDX1,2,4:0.932634597613;NRF1:0.917827322361;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.874782217273;PAX3,7:0.867746317015;PAX8:0.834739262651;ZBTB16:0.747432493176;SPIB:0.743488815208;ZNF143:0.740075913508;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.731695537187;POU1F1:0.679921587167;RBPJ:0.675027664415;AHR_ARNT_ARNT2:0.645625869143;ETS1,2:0.643138666976;OCT4_SOX2{dimer}:0.616760528987;MYOD1:0.564347942058;EVI1:0.517866932713;FOXP3:0.51314630871;BREu{core}:0.483195567593;HNF4A_NR2F1,2:0.481010213497;LMO2:0.45816833409;POU3F1..4:0.451495795201;SNAI1..3:0.445885606129;NR5A1,2:0.441842885738;GFI1:0.425449336341;FOXP1:0.420256678772;SPZ1:0.416396655147;NKX2-2,8:0.413254415911;ZNF384:0.398427782303;ZEB1:0.393141169649;CUX2:0.367008262589;ESRRA:0.34488416334;RORA:0.341468289947;PBX1:0.327464552073;HNF1A:0.318475029335;ARID5B:0.299849604422;FOXN1:0.283588409682;CDC5L:0.219548502348;HSF1,2:0.217125661908;NANOG{mouse}:0.212561126276;GATA6:0.185705424925;STAT1,3:0.181699498951;RFX2..5_RFXANK_RFXAP:0.181529364036;ALX4:0.175426672194;FOX{F1,F2,J1}:0.172798725348;SOX{8,9,10}:0.156916122192;ATF5_CREB3:0.11407071491;TGIF1:0.0970735125656;ESR1:0.0885747640974;CRX:0.0790686360018;IKZF2:0.078620757849;PRRX1,2:0.0757602491704;LHX3,4:0.0731297292607;TFDP1:0.0592301017446;RXRA_VDR{dimer}:0.0524905420829;PAX2:0.0243553982515;NKX3-2:-0.00946612243698;HES1:-0.0103882197375;TP53:-0.0248525305369;CREB1:-0.0915954864285;PRDM1:-0.112168379044;bHLH_family:-0.141380649767;NKX2-3_NKX2-5:-0.145715604126;FOXQ1:-0.146672303626;EBF1:-0.152619767882;SOX5:-0.171044940095;NR1H4:-0.171457310599;PAX4:-0.202124160018;NFE2:-0.229810458963;ATF4:-0.230366473365;DBP:-0.237831449627;TLX2:-0.241852673121;MEF2{A,B,C,D}:-0.249252057959;LEF1_TCF7_TCF7L1,2:-0.278211047761;BPTF:-0.296763365785;HAND1,2:-0.304390242869;SRF:-0.334628178397;EP300:-0.390234042756;ALX1:-0.391391531104;GATA4:-0.413959866104;HOX{A5,B5}:-0.418150119657;ADNP_IRX_SIX_ZHX:-0.43834722201;HBP1_HMGB_SSRP1_UBTF:-0.442831407362;HOX{A4,D4}:-0.446136280294;NFATC1..3:-0.469194168639;FOS_FOS{B,L1}_JUN{B,D}:-0.47580072585;RXR{A,B,G}:-0.487865268285;TEF:-0.493257045261;AR:-0.505828926121;GFI1B:-0.511146385668;SOX17:-0.519680026523;NR6A1:-0.550791796542;SOX2:-0.560507912013;KLF4:-0.584431356653;FOSL2:-0.58658511533;NKX2-1,4:-0.592512316824;ONECUT1,2:-0.603083014679;BACH2:-0.606519400499;HMGA1,2:-0.618924271622;ZFP161:-0.639488788223;UFEwm:-0.640450560739;EN1,2:-0.64289009084;STAT2,4,6:-0.657564393;IKZF1:-0.682032376795;RREB1:-0.685940158176;CEBPA,B_DDIT3:-0.688195997655;NFIL3:-0.699361114087;GLI1..3:-0.734260517816;MZF1:-0.739685154939;TFAP4:-0.74098921276;SMAD1..7,9:-0.754455638358;MYBL2:-0.766991593172;STAT5{A,B}:-0.782479505782;GCM1,2:-0.784829374914;HOX{A6,A7,B6,B7}:-0.803687033526;NKX3-1:-0.818993250626;PPARG:-0.82056527378;PAX1,9:-0.826713516328;SREBF1,2:-0.836657185559;ATF2:-0.843870436334;HLF:-0.846440132248;NHLH1,2:-0.861330245316;TAL1_TCF{3,4,12}:-0.914148726196;ZNF148:-0.923810945583;MYFfamily:-0.924009766946;FOXD3:-0.928959043952;ZNF423:-0.957188083363;MTF1:-0.963145026819;EGR1..3:-0.977760003256;ZIC1..3:-0.992846577728;RFX1:-1.01291870628;XCPE1{core}:-1.03851626774;FOXO1,3,4:-1.0471811307;MTE{core}:-1.06487027425;TBP:-1.08372042353;HIC1:-1.08986749596;JUN:-1.1058763335;T:-1.12366012248;REST:-1.13330000012;NFIX:-1.14587520621;PAX5:-1.15753204538;GTF2I:-1.18459570894;NFE2L2:-1.21223264823;XBP1:-1.23331964364;NFE2L1:-1.24787716658;MAFB:-1.27537639605;MED-1{core}:-1.2857994497;FOXM1:-1.2922012403;NANOG:-1.30990483605;TFAP2{A,C}:-1.32150589921;PATZ1:-1.34822630122;TFCP2:-1.35779454385;ATF6:-1.37025780055;GTF2A1,2:-1.38000243687;HMX1:-1.388945926;GZF1:-1.43654812128;TBX4,5:-1.46044857331;MAZ:-1.47340187805;ZNF238:-1.47592322241;TLX1..3_NFIC{dimer}:-1.48167347747;ZBTB6:-1.63966328517;POU6F1:-1.67507898292;TEAD1:-1.68001545219;NR3C1:-1.68460187491;FOX{D1,D2}:-1.72871992526;SP1:-1.81297752058;TFAP2B:-1.90774420056;FOX{I1,J2}:-2.13253849766;FOXL1:-2.4673002322
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10823-111C4;search_select_hide=table117:FF:10823-111C4
}}
}}

Latest revision as of 15:07, 3 June 2020

Name:B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3
Species:Human (Homo sapiens)
Library ID:CNhs12333
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
ageNA
cell typeb cell
cell lineGM12878
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004741
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12333 CAGE DRX007778 DRR008650
Accession ID Hg19

Library idBAMCTSS
CNhs12333 DRZ000075 DRZ001460
Accession ID Hg38

Library idBAMCTSS
CNhs12333 DRZ011425 DRZ012810
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0569
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0329
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.687
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0329
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0329
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0329
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0329
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0399
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0921
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0329
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.195
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.397
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0.0329
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0673
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.0329
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0329
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0635
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.748
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.157
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.0329
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0131
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0785
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00267
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.168
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0329
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.609
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.119
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0255
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.034
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0.65
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0921
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.397
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0.0921
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12333

Jaspar motifP-value
MA0002.20.00372
MA0003.10.75
MA0004.10.0824
MA0006.10.221
MA0007.10.321
MA0009.10.815
MA0014.10.455
MA0017.10.0117
MA0018.20.414
MA0019.10.34
MA0024.11.86554e-7
MA0025.10.113
MA0027.10.821
MA0028.16.51584e-6
MA0029.10.654
MA0030.10.00695
MA0031.10.037
MA0035.20.985
MA0038.10.798
MA0039.20.547
MA0040.10.108
MA0041.10.125
MA0042.10.201
MA0043.10.126
MA0046.10.00215
MA0047.20.355
MA0048.10.641
MA0050.11.0834e-18
MA0051.15.14882e-13
MA0052.10.645
MA0055.10.0387
MA0057.10.791
MA0058.10.0492
MA0059.10.00103
MA0060.11.45415e-4
MA0061.11.36948e-12
MA0062.21.31728e-11
MA0065.20.0229
MA0066.10.536
MA0067.10.649
MA0068.10.0651
MA0069.10.135
MA0070.10.396
MA0071.10.519
MA0072.10.964
MA0073.10.553
MA0074.10.656
MA0076.16.42556e-9
MA0077.10.273
MA0078.10.0914
MA0079.20.188
MA0080.21.87391e-7
MA0081.10.00659
MA0083.10.703
MA0084.10.584
MA0087.10.397
MA0088.10.00781
MA0090.16.74515e-6
MA0091.10.463
MA0092.10.514
MA0093.10.0663
MA0099.20.00583
MA0100.10.0908
MA0101.11.00389e-15
MA0102.20.251
MA0103.10.0284
MA0104.27.11853e-4
MA0105.19.7883e-11
MA0106.10.126
MA0107.13.71982e-16
MA0108.24.64814e-7
MA0111.10.273
MA0112.20.179
MA0113.10.524
MA0114.10.0108
MA0115.10.287
MA0116.13.63585e-5
MA0117.10.682
MA0119.10.827
MA0122.10.54
MA0124.10.975
MA0125.10.148
MA0131.10.0975
MA0135.10.553
MA0136.16.16271e-11
MA0137.20.402
MA0138.20.402
MA0139.10.152
MA0140.10.829
MA0141.10.0943
MA0142.10.321
MA0143.10.701
MA0144.10.332
MA0145.10.589
MA0146.10.433
MA0147.11.64279e-4
MA0148.10.244
MA0149.10.431
MA0150.10.947
MA0152.10.409
MA0153.10.706
MA0154.11.16227e-4
MA0155.10.601
MA0156.17.72609e-12
MA0157.10.0673
MA0159.10.219
MA0160.10.0544
MA0162.10.66
MA0163.11.28251e-10
MA0164.10.923
MA0258.10.053
MA0259.10.0305



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12333

Novel motifP-value
10.00798
100.026
1000.387
1010.222
1020.542
1030.164
1040.556
1050.639
1060.899
1070.56
1080.943
1090.0728
110.252
1100.154
1110.0613
1120.157
1130.579
1140.48
1150.428
1160.495
1170.0215
1180.129
1190.228
120.983
1200.374
1210.964
1220.594
1233.87578e-5
1240.0505
1250.443
1260.287
1270.301
1280.662
1290.681
130.0845
1300.62
1310.424
1320.672
1330.659
1340.666
1350.995
1360.102
1370.741
1380.924
1390.406
140.774
1400.291
1410.0513
1420.763
1430.495
1440.661
1450.0604
1460.758
1470.25
1480.0662
1490.371
150.0611
1500.985
1510.682
1520.0703
1530.852
1540.993
1550.116
1560.777
1570.124
1580.854
1590.129
160.9
1600.194
1610.0311
1620.951
1630.743
1640.128
1650.646
1660.289
1670.32
1680.277
1690.659
170.868
180.802
190.584
20.621
200.299
210.177
220.992
230.294
240.192
250.093
260.0622
270.519
280.375
290.0279
30.0553
300.106
310.765
320.425
330.293
340.604
350.161
360.0353
370.366
380.39
390.439
40.788
400.434
410.759
420.0758
430.452
440.177
450.38
460.239
470.0382
480.062
490.316
50.681
500.879
510.755
520.252
530.34
540.658
550.456
560.773
570.213
580.0771
590.32
60.872
600.855
610.136
620.0874
630.727
640.214
650.982
660.389
670.8
680.0539
690.501
70.114
700.454
710.0165
720.302
730.866
740.826
750.00987
760.507
770.562
780.0159
790.855
80.722
800.104
810.454
820.719
830.402
840.218
850.243
860.348
870.126
880.692
890.957
90.914
900.329
910.552
920.722
930.268
940.783
950.0207
960.807
970.148
980.509
990.289



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12333


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101035 (hematopoietic cell line sample)
0100773 (lymphoblastoid cell line sample)
0101522 (B-lymphocyte cell line sample)
0102062 (B-lymphoblastoid cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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