FF:10852-111F6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005350 | |||
|accession_numbers=CAGE;DRX007941;DRR008813;DRZ000238;DRZ001623;DRZ011588;DRZ012973 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.70!59.96!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.68!76.40!TFAP2A;;chr10:48355030..48355090,+!p1@ZNF488!1.40!31.02!ZNF488;;chr11:46299199..46299233,+!p1@CREB3L1!1.35!108.12!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!1.33!20.37!HOXA3;;chr8:37963466..37963506,+!p3@ASH2L!1.27!21.76!ASH2L;;chr17:46682321..46682362,-!p1@HOXB6!1.27!17.83!HOXB6;;chr15:83953397..83953425,-!p1@BNC1!1.22!18.06!BNC1;;chr18:19749386..19749404,+!p2@GATA6!1.19!20.84!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.19!14.59!HOXA5;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.46!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.12!12.27!HOXC5;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.81!TBX20;;chr18:19749541..19749557,+!p1@GATA6!1.08!34.96!GATA6;;chr3:138665937..138665968,-!p1@FOXL2!1.08!11.11!FOXL2;;chr7:27170359..27170381,-!p1@HOXA4!1.07!10.88!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!1.07!10.65!HOXA5;;chr12:54332608..54332636,+!p1@HOXC13!1.03!9.72!HOXC13;;chr6:126240380..126240430,+!p2@NCOA7!1.02!25.00!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!1.02!11.58!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!1.01!10.88!GATA3;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.26!TFAP2A;;chr3:138665969..138665993,-!p2@FOXL2!1.01!9.26!FOXL2;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.88!FOXF1;;chr5:142780189..142780223,-!p6@NR3C1!0.99!8.80!NR3C1;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.57!HOXC10;;chr5:142780237..142780261,-!p7@NR3C1!0.97!8.33!NR3C1;;chr5:172662197..172662216,-!p1@NKX2-5!0.97!8.33!NKX2-5;;chr7:19157248..19157268,-!p1@TWIST1!0.94!22.23!TWIST1;;chr6:10412576..10412599,-!p5@TFAP2A!0.94!7.64!TFAP2A;;chr7:27142290..27142310,-!p1@HOXA2!0.94!7.64!HOXA2;;chr15:80696703..80696754,+!p1@ARNT2!0.92!9.96!ARNT2;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.33!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!0.91!15.51!SOX15;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.80!TBX18;;chr9:35732647..35732678,+!p2@CREB3!0.89!39.36!CREB3;;chr8:37963407..37963454,+!p2@ASH2L!0.89!21.30!ASH2L;;chr17:46806067..46806097,-!p1@HOXB13!0.87!6.48!HOXB13;;chr17:46691732..46691766,-!p4@HOXB8!0.86!6.25!HOXB8;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.25!IRX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.85!31.95!NFE2L3;;chr12:80084737..80084763,-!p3@PAWR!0.85!23.85!PAWR;;chr12:80084167..80084197,-!p5@PAWR!0.85!14.82!PAWR;;chr10:8096631..8096660,+!p1@GATA3!0.85!7.41!GATA3;;chr12:54332687..54332701,+!p3@HOXC13!0.85!6.02!HOXC13;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.02!KDM5D;;chr9:2158443..2158481,+!p2@SMARCA2!0.83!17.13!SMARCA2;;chr7:27169801..27169844,-!p2@HOXA4!0.83!5.79!HOXA4;;chr11:31832658..31832681,-!p1@PAX6!0.83!5.79!PAX6;;chr12:124873357..124873401,-!p1@NCOR2!0.82!69.69!NCOR2;;chr3:178789522..178789564,-!p2@ZMAT3!0.82!44.22!ZMAT3;;chr15:67357924..67357952,+!p2@SMAD3!0.82!39.59!SMAD3;;chr18:53068911..53068935,-!p4@TCF4!0.82!6.48!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.56!CREB3L1;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr6:28321909..28321965,-!p3@ZNF323!0.80!5.33!ZNF323;;chr7:96654026..96654061,-!p2@DLX5!0.80!5.33!DLX5;;chr3:25470156..25470227,+!p2@RARB!0.80!5.33!RARB;;chr11:31832610..31832639,-!p5@PAX6!0.80!5.33!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.80!5.33!FOXG1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.39!PPP1R13L;;chr16:86612320..86612394,+!p1@FOXL1!0.78!5.09!FOXL1;;chr11:46299186..46299195,+!p3@CREB3L1!0.77!5.56!CREB3L1;;chr6:21597765..21597779,+!p2@SOX4!0.76!42.37!SOX4;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.56!PAWR;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.18!HOXB7;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.10!MECOM;;chr7:27170274..27170308,-!p3@HOXA4!0.75!4.63!HOXA4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.63!HOXC5;;chr2:176969228..176969260,+!p1@HOXD11!0.73!4.40!HOXD11;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.40!KCNIP3;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.40!ZNF323;;chr7:27153428..27153440,-!p3@HOXA3!0.73!4.40!HOXA3;;chr5:321810..321877,+!p1@AHRR!0.71!14.35!AHRR;;chr17:46675558..46675577,-!p2@HOXB6!0.71!4.17!HOXB6;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.38!GLIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!11.11!TWIST1;;chr15:67418047..67418093,+!p4@SMAD3!0.69!5.09!SMAD3;;chr10:64134120..64134183,+!p1@ZNF365!0.69!4.86!ZNF365;;chr17:46675420..46675465,-!p3@HOXB6!0.69!4.63!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.69!3.94!LHX1;;chr17:40477163..40477183,-!p7@STAT3!0.69!3.94!STAT3;;chr17:46806098..46806118,-!p3@HOXB13!0.69!3.94!HOXB13;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.94!HOXC8;;chr8:67525443..67525459,-!p2@MYBL1!0.68!6.02!MYBL1;;chr1:151032782..151032801,+!p4@MLLT11!0.67!8.10!MLLT11;;chr3:25469724..25469773,+!p1@RARB!0.67!5.56!RARB;;chr17:46622440..46622477,-!p5@HOXB2!0.67!4.17!HOXB2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.70!ARNT2;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.70!HOXD8;;chr5:3595977..3595999,+!p1@IRX1!0.67!3.70!IRX1;;chr5:50679228..50679288,+!p1@ISL1!0.67!3.70!ISL1;;chr8:11561684..11561751,+!p1@GATA4!0.67!3.70!GATA4;;chr6:21593973..21593988,+!p1@SOX4!0.66!149.56!SOX4;;chr20:30193083..30193098,+!p1@ID1!0.65!334.09!ID1;;chr15:67418119..67418162,+!p5@SMAD3!0.65!3.94!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.65!3.47!SEBOX;;chr17:46659728..46659749,-!p3@HOXB3!0.65!3.47!HOXB3;;chr17:7493405..7493419,-!p1@SOX15!0.65!3.47!SOX15;;chr18:19749353..19749367,+!p4@GATA6!0.65!3.47!GATA6;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.47!HOXA3;;chr11:46333934..46333963,+!p5@CREB3L1!0.65!3.47!CREB3L1;;chr12:54332675..54332686,+!p4@HOXC13!0.65!3.47!HOXC13;;chr12:54393880..54393962,+!p1@HOXC9!0.65!3.47!HOXC9;;chr14:38064429..38064486,-!p1@FOXA1!0.65!3.47!FOXA1;;chr18:19749517..19749531,+!p3@GATA6!0.64!6.48!GATA6;;chr17:46655704..46655718,-!p2@HOXB4!0.64!5.33!HOXB4;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.86!HOXB7;;chr1:158985469..158985489,+!p7@IFI16!0.64!4.17!IFI16;;chr6:34204921..34204939,+!p3@HMGA1!0.63!117.61!HMGA1;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.43!RUNX1;;chr17:46622070..46622109,-!p1@HOXB2!0.63!8.10!HOXB2;;chr12:80085061..80085119,-!p6@PAWR!0.63!5.56!PAWR;;chr7:27835758..27835772,+!p3@TAX1BP1!0.63!4.63!TAX1BP1;;chr5:139492456..139492489,+!p7@PURA!0.63!3.24!PURA;;chr9:16705069..16705086,-!p3@BNC2!0.63!3.24!BNC2;;chr3:25469815..25469866,+!p3@RARB!0.63!3.24!RARB;;chr17:46703687..46703740,-!p1@HOXB9!0.63!3.24!HOXB9;;chr10:63809013..63809041,+!p3@ARID5B!0.61!20.14!ARID5B;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.02!TBX18;;chr5:134369905..134369972,-!p1@PITX1!0.61!5.09!PITX1;;chr5:43067636..43067674,+!p6@ZNF131!0.61!4.40!ZNF131;;chr12:80084137..80084165,-!p10@PAWR!0.61!4.17!PAWR;;chr3:128206762..128206781,-!p2@GATA2!0.60!21.99!GATA2;;chr12:54332652..54332671,+!p2@HOXC13!0.60!3.01!HOXC13;;chr15:67418177..67418204,+!p9@SMAD3!0.60!3.01!SMAD3;;chr9:35732514..35732530,+!p5@CREB3!0.59!4.40!CREB3;;chr1:23885981..23886002,-!p1@ID3!0.58!614.00!ID3;;chr15:67358163..67358192,+!p1@SMAD3!0.58!81.03!SMAD3;;chr12:80083544..80083558,-!p13@PAWR!0.58!3.70!PAWR;;chr10:64134045..64134083,+!p3@ZNF365!0.58!2.78!ZNF365;;chr21:38071403..38071428,+!p2@SIM2!0.58!2.78!SIM2;;chr21:38071430..38071456,+!p1@SIM2!0.58!2.78!SIM2;;chrY:2803415..2803468,+!p1@ZFY!0.58!2.78!ZFY;;chr7:27183325..27183338,-!p5@HOXA5!0.58!2.78!HOXA5;;chr1:35656508..35656584,-!p2@SFPQ!0.57!10.19!SFPQ;;chr11:120107344..120107351,+!p1@POU2F3!0.57!3.47!POU2F3;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.33!NR2F2;;chr2:85981222..85981259,+!p2@ATOH8!0.56!4.86!ATOH8;;chr12:27485823..27485868,+!p2@ARNTL2!0.55!12.50!ARNTL2;;chr11:61520075..61520136,+!p1@C11orf9!0.55!6.25!C11orf9;;chr3:157823517..157823562,-!p1@SHOX2!0.55!2.78!SHOX2;;chr6:10415263..10415274,-!p8@TFAP2A!0.55!2.55!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!0.55!2.55!SOX17;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.55!HOXB8;;chr17:46692457..46692484,-!p2@HOXB8!0.55!2.55!HOXB8;;chr17:7197911..7197964,-!p1@YBX2!0.55!2.55!YBX2;;chr18:19749504..19749515,+!p5@GATA6!0.55!2.55!GATA6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.54!226.20!TAX1BP3;;chr8:77593474..77593612,+!p1@ZFHX4!0.54!12.73!ZFHX4;;chr12:80084279..80084293,-!p8@PAWR!0.54!4.63!PAWR;;chr17:46622114..46622138,-!p4@HOXB2!0.54!4.17!HOXB2;;chr3:178789993..178790049,-!p5@ZMAT3!0.54!3.94!ZMAT3;;chr12:80085255..80085284,-!p9@PAWR!0.54!3.94!PAWR;;chrX:56258844..56258882,+!p1@KLF8!0.54!3.70!KLF8;;chr10:8095593..8095625,+!p3@GATA3!0.54!3.01!GATA3;;chr8:37553261..37553282,+!p2@ZNF703!0.53!23.38!ZNF703;;chr11:65686732..65686756,+!p2@DRAP1!0.53!12.50!DRAP1;;chr3:32023232..32023273,+!p1@ZNF860!0.53!3.70!ZNF860;;chr4:103423079..103423112,+!p4@NFKB1!0.52!2.32!NFKB1;;chrX:103499602..103499617,-!p1@ESX1!0.52!2.32!ESX1;;chr15:67391010..67391046,+!p13@SMAD3!0.52!2.32!SMAD3;;chr17:46703212..46703238,-!p2@HOXB9!0.52!2.32!HOXB9;;chr12:54394309..54394336,+!p2@HOXC9!0.52!2.32!HOXC9;;chr5:172662230..172662241,-!p3@NKX2-5!0.52!2.32!NKX2-5;;chr7:27196267..27196311,-!p1@HOXA7!0.52!2.32!HOXA7;;chr3:169381420..169381535,-!p1@MECOM!0.51!2.78!MECOM;;chr15:96869222..96869251,+!p18@NR2F2!0.51!2.78!NR2F2;;chr17:46622229..46622257,-!p6@HOXB2!0.51!2.78!HOXB2;;chr12:27485785..27485816,+!p1@ARNTL2!0.50!19.68!ARNTL2;;chr17:46621937..46621966,-!p2@HOXB2!0.50!7.18!HOXB2;;chr18:51750414..51750449,-!p5@MBD2!0.50!4.86!MBD2;;chr1:158979792..158979814,+!p2@IFI16!0.49!26.63!IFI16;;chr1:200379104..200379128,-!p2@ZNF281!0.49!6.25!ZNF281;;chrX:129244655..129244697,-!p4@ELF4!0.49!4.40!ELF4;;chr11:65686802..65686818,+!p6@DRAP1!0.49!4.17!DRAP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.49!3.94!FOXQ1;;chr7:128577972..128578047,+!p1@IRF5!0.49!3.70!IRF5;;chr7:27788205..27788255,+!p2@TAX1BP1!0.49!3.70!TAX1BP1;;chr7:1577899..1577943,+!p3@MAFK!0.49!2.08!MAFK;;chr7:27153443..27153450,-!p8@HOXA3!0.49!2.08!HOXA3;;chr12:54380036..54380091,+!p4@HOXC10!0.49!2.08!HOXC10;;chr12:54447637..54447659,+!p4@HOXC4!0.49!2.08!HOXC4;;chr12:80084120..80084136,-!p15@PAWR!0.49!2.08!PAWR;;chr17:46622175..46622186,-!p12@HOXB2!0.49!2.08!HOXB2;;chr17:46655672..46655697,-!p3@HOXB4!0.49!2.08!HOXB4;;chr17: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| |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.70!59.96!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.68!76.40!TFAP2A;;chr10:48355030..48355090,+!p1@ZNF488!1.40!31.02!ZNF488;;chr11:46299199..46299233,+!p1@CREB3L1!1.35!108.12!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!1.33!20.37!HOXA3;;chr8:37963466..37963506,+!p3@ASH2L!1.27!21.76!ASH2L;;chr17:46682321..46682362,-!p1@HOXB6!1.27!17.83!HOXB6;;chr15:83953397..83953425,-!p1@BNC1!1.22!18.06!BNC1;;chr18:19749386..19749404,+!p2@GATA6!1.19!20.84!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.19!14.59!HOXA5;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.46!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.12!12.27!HOXC5;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.81!TBX20;;chr18:19749541..19749557,+!p1@GATA6!1.08!34.96!GATA6;;chr3:138665937..138665968,-!p1@FOXL2!1.08!11.11!FOXL2;;chr7:27170359..27170381,-!p1@HOXA4!1.07!10.88!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!1.07!10.65!HOXA5;;chr12:54332608..54332636,+!p1@HOXC13!1.03!9.72!HOXC13;;chr6:126240380..126240430,+!p2@NCOA7!1.02!25.00!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!1.02!11.58!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!1.01!10.88!GATA3;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.26!TFAP2A;;chr3:138665969..138665993,-!p2@FOXL2!1.01!9.26!FOXL2;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.88!FOXF1;;chr5:142780189..142780223,-!p6@NR3C1!0.99!8.80!NR3C1;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.57!HOXC10;;chr5:142780237..142780261,-!p7@NR3C1!0.97!8.33!NR3C1;;chr5:172662197..172662216,-!p1@NKX2-5!0.97!8.33!NKX2-5;;chr7:19157248..19157268,-!p1@TWIST1!0.94!22.23!TWIST1;;chr6:10412576..10412599,-!p5@TFAP2A!0.94!7.64!TFAP2A;;chr7:27142290..27142310,-!p1@HOXA2!0.94!7.64!HOXA2;;chr15:80696703..80696754,+!p1@ARNT2!0.92!9.96!ARNT2;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.33!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!0.91!15.51!SOX15;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.80!TBX18;;chr9:35732647..35732678,+!p2@CREB3!0.89!39.36!CREB3;;chr8:37963407..37963454,+!p2@ASH2L!0.89!21.30!ASH2L;;chr17:46806067..46806097,-!p1@HOXB13!0.87!6.48!HOXB13;;chr17:46691732..46691766,-!p4@HOXB8!0.86!6.25!HOXB8;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.25!IRX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.85!31.95!NFE2L3;;chr12:80084737..80084763,-!p3@PAWR!0.85!23.85!PAWR;;chr12:80084167..80084197,-!p5@PAWR!0.85!14.82!PAWR;;chr10:8096631..8096660,+!p1@GATA3!0.85!7.41!GATA3;;chr12:54332687..54332701,+!p3@HOXC13!0.85!6.02!HOXC13;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.02!KDM5D;;chr9:2158443..2158481,+!p2@SMARCA2!0.83!17.13!SMARCA2;;chr7:27169801..27169844,-!p2@HOXA4!0.83!5.79!HOXA4;;chr11:31832658..31832681,-!p1@PAX6!0.83!5.79!PAX6;;chr12:124873357..124873401,-!p1@NCOR2!0.82!69.69!NCOR2;;chr3:178789522..178789564,-!p2@ZMAT3!0.82!44.22!ZMAT3;;chr15:67357924..67357952,+!p2@SMAD3!0.82!39.59!SMAD3;;chr18:53068911..53068935,-!p4@TCF4!0.82!6.48!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.56!CREB3L1;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr6:28321909..28321965,-!p3@ZNF323!0.80!5.33!ZNF323;;chr7:96654026..96654061,-!p2@DLX5!0.80!5.33!DLX5;;chr3:25470156..25470227,+!p2@RARB!0.80!5.33!RARB;;chr11:31832610..31832639,-!p5@PAX6!0.80!5.33!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.80!5.33!FOXG1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.39!PPP1R13L;;chr16:86612320..86612394,+!p1@FOXL1!0.78!5.09!FOXL1;;chr11:46299186..46299195,+!p3@CREB3L1!0.77!5.56!CREB3L1;;chr6:21597765..21597779,+!p2@SOX4!0.76!42.37!SOX4;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.56!PAWR;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.18!HOXB7;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.10!MECOM;;chr7:27170274..27170308,-!p3@HOXA4!0.75!4.63!HOXA4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.63!HOXC5;;chr2:176969228..176969260,+!p1@HOXD11!0.73!4.40!HOXD11;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.40!KCNIP3;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.40!ZNF323;;chr7:27153428..27153440,-!p3@HOXA3!0.73!4.40!HOXA3;;chr5:321810..321877,+!p1@AHRR!0.71!14.35!AHRR;;chr17:46675558..46675577,-!p2@HOXB6!0.71!4.17!HOXB6;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.38!GLIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!11.11!TWIST1;;chr15:67418047..67418093,+!p4@SMAD3!0.69!5.09!SMAD3;;chr10:64134120..64134183,+!p1@ZNF365!0.69!4.86!ZNF365;;chr17:46675420..46675465,-!p3@HOXB6!0.69!4.63!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.69!3.94!LHX1;;chr17:40477163..40477183,-!p7@STAT3!0.69!3.94!STAT3;;chr17:46806098..46806118,-!p3@HOXB13!0.69!3.94!HOXB13;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.94!HOXC8;;chr8:67525443..67525459,-!p2@MYBL1!0.68!6.02!MYBL1;;chr1:151032782..151032801,+!p4@MLLT11!0.67!8.10!MLLT11;;chr3:25469724..25469773,+!p1@RARB!0.67!5.56!RARB;;chr17:46622440..46622477,-!p5@HOXB2!0.67!4.17!HOXB2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.70!ARNT2;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.70!HOXD8;;chr5:3595977..3595999,+!p1@IRX1!0.67!3.70!IRX1;;chr5:50679228..50679288,+!p1@ISL1!0.67!3.70!ISL1;;chr8:11561684..11561751,+!p1@GATA4!0.67!3.70!GATA4;;chr6:21593973..21593988,+!p1@SOX4!0.66!149.56!SOX4;;chr20:30193083..30193098,+!p1@ID1!0.65!334.09!ID1;;chr15:67418119..67418162,+!p5@SMAD3!0.65!3.94!SMAD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.65!3.47!SEBOX;;chr17:46659728..46659749,-!p3@HOXB3!0.65!3.47!HOXB3;;chr17:7493405..7493419,-!p1@SOX15!0.65!3.47!SOX15;;chr18:19749353..19749367,+!p4@GATA6!0.65!3.47!GATA6;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.47!HOXA3;;chr11:46333934..46333963,+!p5@CREB3L1!0.65!3.47!CREB3L1;;chr12:54332675..54332686,+!p4@HOXC13!0.65!3.47!HOXC13;;chr12:54393880..54393962,+!p1@HOXC9!0.65!3.47!HOXC9;;chr14:38064429..38064486,-!p1@FOXA1!0.65!3.47!FOXA1;;chr18:19749517..19749531,+!p3@GATA6!0.64!6.48!GATA6;;chr17:46655704..46655718,-!p2@HOXB4!0.64!5.33!HOXB4;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.86!HOXB7;;chr1:158985469..158985489,+!p7@IFI16!0.64!4.17!IFI16;;chr6:34204921..34204939,+!p3@HMGA1!0.63!117.61!HMGA1;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.43!RUNX1;;chr17:46622070..46622109,-!p1@HOXB2!0.63!8.10!HOXB2;;chr12:80085061..80085119,-!p6@PAWR!0.63!5.56!PAWR;;chr7:27835758..27835772,+!p3@TAX1BP1!0.63!4.63!TAX1BP1;;chr5:139492456..139492489,+!p7@PURA!0.63!3.24!PURA;;chr9:16705069..16705086,-!p3@BNC2!0.63!3.24!BNC2;;chr3:25469815..25469866,+!p3@RARB!0.63!3.24!RARB;;chr17:46703687..46703740,-!p1@HOXB9!0.63!3.24!HOXB9;;chr10:63809013..63809041,+!p3@ARID5B!0.61!20.14!ARID5B;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.02!TBX18;;chr5:134369905..134369972,-!p1@PITX1!0.61!5.09!PITX1;;chr5:43067636..43067674,+!p6@ZNF131!0.61!4.40!ZNF131;;chr12:80084137..80084165,-!p10@PAWR!0.61!4.17!PAWR;;chr3:128206762..128206781,-!p2@GATA2!0.60!21.99!GATA2;;chr12:54332652..54332671,+!p2@HOXC13!0.60!3.01!HOXC13;;chr15:67418177..67418204,+!p9@SMAD3!0.60!3.01!SMAD3;;chr9:35732514..35732530,+!p5@CREB3!0.59!4.40!CREB3;;chr1:23885981..23886002,-!p1@ID3!0.58!614.00!ID3;;chr15:67358163..67358192,+!p1@SMAD3!0.58!81.03!SMAD3;;chr12:80083544..80083558,-!p13@PAWR!0.58!3.70!PAWR;;chr10:64134045..64134083,+!p3@ZNF365!0.58!2.78!ZNF365;;chr21:38071403..38071428,+!p2@SIM2!0.58!2.78!SIM2;;chr21:38071430..38071456,+!p1@SIM2!0.58!2.78!SIM2;;chrY:2803415..2803468,+!p1@ZFY!0.58!2.78!ZFY;;chr7:27183325..27183338,-!p5@HOXA5!0.58!2.78!HOXA5;;chr1:35656508..35656584,-!p2@SFPQ!0.57!10.19!SFPQ;;chr11:120107344..120107351,+!p1@POU2F3!0.57!3.47!POU2F3;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.33!NR2F2;;chr2:85981222..85981259,+!p2@ATOH8!0.56!4.86!ATOH8;;chr12:27485823..27485868,+!p2@ARNTL2!0.55!12.50!ARNTL2;;chr11:61520075..61520136,+!p1@C11orf9!0.55!6.25!C11orf9;;chr3:157823517..157823562,-!p1@SHOX2!0.55!2.78!SHOX2;;chr6:10415263..10415274,-!p8@TFAP2A!0.55!2.55!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!0.55!2.55!SOX17;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.55!HOXB8;;chr17:46692457..46692484,-!p2@HOXB8!0.55!2.55!HOXB8;;chr17:7197911..7197964,-!p1@YBX2!0.55!2.55!YBX2;;chr18:19749504..19749515,+!p5@GATA6!0.55!2.55!GATA6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.54!226.20!TAX1BP3;;chr8:77593474..77593612,+!p1@ZFHX4!0.54!12.73!ZFHX4;;chr12:80084279..80084293,-!p8@PAWR!0.54!4.63!PAWR;;chr17:46622114..46622138,-!p4@HOXB2!0.54!4.17!HOXB2;;chr3:178789993..178790049,-!p5@ZMAT3!0.54!3.94!ZMAT3;;chr12:80085255..80085284,-!p9@PAWR!0.54!3.94!PAWR;;chrX:56258844..56258882,+!p1@KLF8!0.54!3.70!KLF8;;chr10:8095593..8095625,+!p3@GATA3!0.54!3.01!GATA3;;chr8:37553261..37553282,+!p2@ZNF703!0.53!23.38!ZNF703;;chr11:65686732..65686756,+!p2@DRAP1!0.53!12.50!DRAP1;;chr3:32023232..32023273,+!p1@ZNF860!0.53!3.70!ZNF860;;chr4:103423079..103423112,+!p4@NFKB1!0.52!2.32!NFKB1;;chrX:103499602..103499617,-!p1@ESX1!0.52!2.32!ESX1;;chr15:67391010..67391046,+!p13@SMAD3!0.52!2.32!SMAD3;;chr17:46703212..46703238,-!p2@HOXB9!0.52!2.32!HOXB9;;chr12:54394309..54394336,+!p2@HOXC9!0.52!2.32!HOXC9;;chr5:172662230..172662241,-!p3@NKX2-5!0.52!2.32!NKX2-5;;chr7:27196267..27196311,-!p1@HOXA7!0.52!2.32!HOXA7;;chr3:169381420..169381535,-!p1@MECOM!0.51!2.78!MECOM;;chr15:96869222..96869251,+!p18@NR2F2!0.51!2.78!NR2F2;;chr17:46622229..46622257,-!p6@HOXB2!0.51!2.78!HOXB2;;chr12:27485785..27485816,+!p1@ARNTL2!0.50!19.68!ARNTL2;;chr17:46621937..46621966,-!p2@HOXB2!0.50!7.18!HOXB2;;chr18:51750414..51750449,-!p5@MBD2!0.50!4.86!MBD2;;chr1:158979792..158979814,+!p2@IFI16!0.49!26.63!IFI16;;chr1:200379104..200379128,-!p2@ZNF281!0.49!6.25!ZNF281;;chrX:129244655..129244697,-!p4@ELF4!0.49!4.40!ELF4;;chr11:65686802..65686818,+!p6@DRAP1!0.49!4.17!DRAP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.49!3.94!FOXQ1;;chr7:128577972..128578047,+!p1@IRF5!0.49!3.70!IRF5;;chr7:27788205..27788255,+!p2@TAX1BP1!0.49!3.70!TAX1BP1;;chr7:1577899..1577943,+!p3@MAFK!0.49!2.08!MAFK;;chr7:27153443..27153450,-!p8@HOXA3!0.49!2.08!HOXA3;;chr12:54380036..54380091,+!p4@HOXC10!0.49!2.08!HOXC10;;chr12:54447637..54447659,+!p4@HOXC4!0.49!2.08!HOXC4;;chr12:80084120..80084136,-!p15@PAWR!0.49!2.08!PAWR;;chr17:46622175..46622186,-!p12@HOXB2!0.49!2.08!HOXB2;;chr17:46655672..46655697,-!p3@HOXB4!0.49!2.08!HOXB4;;chr17: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| ||
|ffid_belonging_in_development=CL:0000222 | |||
|fonse_cell_line=FF:0102424 | |fonse_cell_line=FF:0102424 | ||
|fonse_cell_line_closure=FF:0102424 | |fonse_cell_line_closure=FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10852-111F6 | |id=FF:10852-111F6 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102424 | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13068 | |||
|library_id_phase_based=2:CNhs13068 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10852 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10852 | |||
|name=mesothelioma cell line:Mero-48a | |name=mesothelioma cell line:Mero-48a | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13068,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13068,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0452211708913631,0,0.166986711835166,0,0,0.00493963893009378,0,-0.13206483217367,0.402864851117041,0,0,0,0,0,0,0,0,0,0,0.0904423417827262,0,0,0.131353542942776,0,0,0.0817053486396868,0,0,0.186718657023147,0,0,0.356115850543828,0,0,0,0,0,0,0,0,0,0,0.284676553291204,0,0.124169429808702,0.0904423417827262,0,0,0,0,0,0,0,0.0210061497785288,0,0,0,0.333973423670332,0,0,0,0.0682653077738747,0,0,0.0679140418033829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0934891382972398,0,0,0,0.0232702512030494,0.049059084857002,0.0452211708913631,0.16525766901648,0.0452211708913631,0,-0.00759300945498022,0.0707279171415145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0059312521397349,0.16525766901648,0,0,0,-0.0365627474558222,0,0,0.099524340085309,0,0,0 | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=85.4649 | |rna_weight_ug=85.4649 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100104 | |sample_cell_catalog=9100104 | ||
|sample_cell_line=Mero-48a | |sample_cell_line=Mero-48a | ||
| Line 79: | Line 100: | ||
|top_motifs=AIRE:1.45813574767;HSF1,2:1.23050133001;TEF:1.20351758506;ELK1,4_GABP{A,B1}:1.07765644108;NFE2L1:1.05464096819;EVI1:0.964297023224;NKX3-1:0.960056597752;TEAD1:0.934742051228;HOX{A5,B5}:0.868259307685;ADNP_IRX_SIX_ZHX:0.83515319513;NR3C1:0.783945062016;GATA4:0.757387537515;POU1F1:0.75365001386;GZF1:0.713080418945;TAL1_TCF{3,4,12}:0.681439906032;UFEwm:0.676301196681;ARID5B:0.675151612623;NR6A1:0.584395075374;ZNF384:0.579664096173;GCM1,2:0.571002955985;bHLH_family:0.547837449142;KLF4:0.539006452406;GFI1B:0.535177437032;GFI1:0.53403876648;HOXA9_MEIS1:0.533813531785;ONECUT1,2:0.514178078472;GLI1..3:0.457465452785;LMO2:0.440054827524;ZBTB6:0.438492252331;POU3F1..4:0.429259353387;CDX1,2,4:0.404435934661;PAX5:0.391908612974;HMGA1,2:0.385261014144;BACH2:0.364604135952;HIF1A:0.355543807708;NKX6-1,2:0.352342456512;ZBTB16:0.35058188826;POU5F1:0.343575031881;TP53:0.342797088821;NR1H4:0.306324485603;RXR{A,B,G}:0.305532730503;NRF1:0.303406204395;ZNF143:0.277600750355;XCPE1{core}:0.274717266839;MYBL2:0.268012581625;EN1,2:0.258520863726;PRRX1,2:0.258478863648;PAX4:0.253059070356;NKX3-2:0.249673073218;POU6F1:0.20257104336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.202072398646;TBX4,5:0.201646292162;NFE2L2:0.19088684885;NFY{A,B,C}:0.188754794937;SNAI1..3:0.178141057921;LHX3,4:0.159921211237;YY1:0.14811653717;MZF1:0.147771305055;TLX1..3_NFIC{dimer}:0.142408087423;NFE2:0.137061404332;PPARG:0.123676685056;TOPORS:0.119800423379;SOX17:0.0991763223778;IKZF1:0.0728175012648;GTF2A1,2:0.0659380164224;ELF1,2,4:0.0636614267222;FOXQ1:0.0636185270794;PITX1..3:0.0599552919843;ZEB1:0.0578881744172;MYOD1:0.0567691308774;FOS_FOS{B,L1}_JUN{B,D}:0.0390752733639;MYB:0.0371369170495;TBP:0.0307790950489;ATF6:0.0213805432525;XBP1:0.0156368644991;E2F1..5:0.0036632859824;NKX2-2,8:0.00289397761435;ZNF148:-0.00110487942095;FOXN1:-0.00819207978584;GTF2I:-0.00922043679647;FOX{I1,J2}:-0.0136413507244;MTF1:-0.0155447492424;SOX2:-0.0173914172582;TFAP2B:-0.0257372966712;HES1:-0.0260221110821;CDC5L:-0.0299212380312;RXRA_VDR{dimer}:-0.0342814337982;HOX{A4,D4}:-0.0436841537072;SRF:-0.0518877171518;RFX1:-0.0613782797758;SP1:-0.0646552083955;PRDM1:-0.0765785151179;STAT1,3:-0.077489197825;FOXA2:-0.0778554937685;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0812641853819;TFDP1:-0.0964550214103;PAX3,7:-0.110150634587;NFATC1..3:-0.11850532401;TFAP2{A,C}:-0.123686977629;ALX1:-0.12566093814;EP300:-0.125791603997;PDX1:-0.1445424413;HLF:-0.145333664887;AHR_ARNT_ARNT2:-0.161811661011;OCT4_SOX2{dimer}:-0.161887408516;STAT5{A,B}:-0.164964715254;PAX6:-0.17173246425;HNF4A_NR2F1,2:-0.172654273083;T:-0.177673968319;HOX{A6,A7,B6,B7}:-0.18060641104;IRF1,2:-0.19113744133;FOXM1:-0.19662036946;FOSL2:-0.19717645404;HNF1A:-0.197435477779;HBP1_HMGB_SSRP1_UBTF:-0.211199728302;TFCP2:-0.212051476381;ALX4:-0.213743789962;IRF7:-0.229117945819;FOXL1:-0.231976222964;MYFfamily:-0.234824803583;PAX8:-0.237843569941;REST:-0.271653172371;DBP:-0.273375432296;ZIC1..3:-0.275847637578;BREu{core}:-0.282956601522;NFKB1_REL_RELA:-0.28804435966;MAZ:-0.295393664618;ATF5_CREB3:-0.297338770818;PBX1:-0.300030518391;IKZF2:-0.319540555953;CRX:-0.324637079599;MAFB:-0.325042966924;SPIB:-0.339189181896;HAND1,2:-0.348611369216;HIC1:-0.353507593812;SOX{8,9,10}:-0.373926759033;SMAD1..7,9:-0.379014481766;NKX2-3_NKX2-5:-0.381800371168;NFIX:-0.39059977962;GATA6:-0.411181958835;AR:-0.411958541616;NR5A1,2:-0.43577401239;FOXO1,3,4:-0.445123179472;CUX2:-0.450063262912;LEF1_TCF7_TCF7L1,2:-0.450773300295;NKX2-1,4:-0.455600801487;NHLH1,2:-0.46836842986;PAX2:-0.470072714119;MTE{core}:-0.473940107768;FOXP1:-0.476147153796;ZFP161:-0.489368752156;ETS1,2:-0.497770154417;RUNX1..3:-0.524518401303;EGR1..3:-0.546543723175;FOX{D1,D2}:-0.558962969013;EBF1:-0.574316535463;VSX1,2:-0.577735293581;POU2F1..3:-0.578790432464;MED-1{core}:-0.585069102932;FOXD3:-0.606035921664;MEF2{A,B,C,D}:-0.606127923488;FOX{F1,F2,J1}:-0.612046497412;ZNF238:-0.618601905042;CEBPA,B_DDIT3:-0.627693063771;SPI1:-0.632077128433;TFAP4:-0.676128713687;ATF2:-0.681562772881;RBPJ:-0.690230409621;DMAP1_NCOR{1,2}_SMARC:-0.691011139694;ATF4:-0.695899773597;CREB1:-0.704326053718;PATZ1:-0.7071719762;HMX1:-0.708785407964;STAT2,4,6:-0.716601717373;NANOG:-0.758426264573;FOXP3:-0.760302290862;SREBF1,2:-0.807377632879;ESR1:-0.808952075968;SPZ1:-0.825708275688;ZNF423:-0.834149676937;TGIF1:-0.836207788623;ESRRA:-0.879601654232;RFX2..5_RFXANK_RFXAP:-0.880285794703;NANOG{mouse}:-0.891133553754;RREB1:-0.892007988095;JUN:-0.941961813206;RORA:-1.05399424821;SOX5:-1.05687225018;TLX2:-1.1170209785;NFIL3:-1.16083481251;BPTF:-1.27150094618;PAX1,9:-1.91089370762 | |top_motifs=AIRE:1.45813574767;HSF1,2:1.23050133001;TEF:1.20351758506;ELK1,4_GABP{A,B1}:1.07765644108;NFE2L1:1.05464096819;EVI1:0.964297023224;NKX3-1:0.960056597752;TEAD1:0.934742051228;HOX{A5,B5}:0.868259307685;ADNP_IRX_SIX_ZHX:0.83515319513;NR3C1:0.783945062016;GATA4:0.757387537515;POU1F1:0.75365001386;GZF1:0.713080418945;TAL1_TCF{3,4,12}:0.681439906032;UFEwm:0.676301196681;ARID5B:0.675151612623;NR6A1:0.584395075374;ZNF384:0.579664096173;GCM1,2:0.571002955985;bHLH_family:0.547837449142;KLF4:0.539006452406;GFI1B:0.535177437032;GFI1:0.53403876648;HOXA9_MEIS1:0.533813531785;ONECUT1,2:0.514178078472;GLI1..3:0.457465452785;LMO2:0.440054827524;ZBTB6:0.438492252331;POU3F1..4:0.429259353387;CDX1,2,4:0.404435934661;PAX5:0.391908612974;HMGA1,2:0.385261014144;BACH2:0.364604135952;HIF1A:0.355543807708;NKX6-1,2:0.352342456512;ZBTB16:0.35058188826;POU5F1:0.343575031881;TP53:0.342797088821;NR1H4:0.306324485603;RXR{A,B,G}:0.305532730503;NRF1:0.303406204395;ZNF143:0.277600750355;XCPE1{core}:0.274717266839;MYBL2:0.268012581625;EN1,2:0.258520863726;PRRX1,2:0.258478863648;PAX4:0.253059070356;NKX3-2:0.249673073218;POU6F1:0.20257104336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.202072398646;TBX4,5:0.201646292162;NFE2L2:0.19088684885;NFY{A,B,C}:0.188754794937;SNAI1..3:0.178141057921;LHX3,4:0.159921211237;YY1:0.14811653717;MZF1:0.147771305055;TLX1..3_NFIC{dimer}:0.142408087423;NFE2:0.137061404332;PPARG:0.123676685056;TOPORS:0.119800423379;SOX17:0.0991763223778;IKZF1:0.0728175012648;GTF2A1,2:0.0659380164224;ELF1,2,4:0.0636614267222;FOXQ1:0.0636185270794;PITX1..3:0.0599552919843;ZEB1:0.0578881744172;MYOD1:0.0567691308774;FOS_FOS{B,L1}_JUN{B,D}:0.0390752733639;MYB:0.0371369170495;TBP:0.0307790950489;ATF6:0.0213805432525;XBP1:0.0156368644991;E2F1..5:0.0036632859824;NKX2-2,8:0.00289397761435;ZNF148:-0.00110487942095;FOXN1:-0.00819207978584;GTF2I:-0.00922043679647;FOX{I1,J2}:-0.0136413507244;MTF1:-0.0155447492424;SOX2:-0.0173914172582;TFAP2B:-0.0257372966712;HES1:-0.0260221110821;CDC5L:-0.0299212380312;RXRA_VDR{dimer}:-0.0342814337982;HOX{A4,D4}:-0.0436841537072;SRF:-0.0518877171518;RFX1:-0.0613782797758;SP1:-0.0646552083955;PRDM1:-0.0765785151179;STAT1,3:-0.077489197825;FOXA2:-0.0778554937685;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0812641853819;TFDP1:-0.0964550214103;PAX3,7:-0.110150634587;NFATC1..3:-0.11850532401;TFAP2{A,C}:-0.123686977629;ALX1:-0.12566093814;EP300:-0.125791603997;PDX1:-0.1445424413;HLF:-0.145333664887;AHR_ARNT_ARNT2:-0.161811661011;OCT4_SOX2{dimer}:-0.161887408516;STAT5{A,B}:-0.164964715254;PAX6:-0.17173246425;HNF4A_NR2F1,2:-0.172654273083;T:-0.177673968319;HOX{A6,A7,B6,B7}:-0.18060641104;IRF1,2:-0.19113744133;FOXM1:-0.19662036946;FOSL2:-0.19717645404;HNF1A:-0.197435477779;HBP1_HMGB_SSRP1_UBTF:-0.211199728302;TFCP2:-0.212051476381;ALX4:-0.213743789962;IRF7:-0.229117945819;FOXL1:-0.231976222964;MYFfamily:-0.234824803583;PAX8:-0.237843569941;REST:-0.271653172371;DBP:-0.273375432296;ZIC1..3:-0.275847637578;BREu{core}:-0.282956601522;NFKB1_REL_RELA:-0.28804435966;MAZ:-0.295393664618;ATF5_CREB3:-0.297338770818;PBX1:-0.300030518391;IKZF2:-0.319540555953;CRX:-0.324637079599;MAFB:-0.325042966924;SPIB:-0.339189181896;HAND1,2:-0.348611369216;HIC1:-0.353507593812;SOX{8,9,10}:-0.373926759033;SMAD1..7,9:-0.379014481766;NKX2-3_NKX2-5:-0.381800371168;NFIX:-0.39059977962;GATA6:-0.411181958835;AR:-0.411958541616;NR5A1,2:-0.43577401239;FOXO1,3,4:-0.445123179472;CUX2:-0.450063262912;LEF1_TCF7_TCF7L1,2:-0.450773300295;NKX2-1,4:-0.455600801487;NHLH1,2:-0.46836842986;PAX2:-0.470072714119;MTE{core}:-0.473940107768;FOXP1:-0.476147153796;ZFP161:-0.489368752156;ETS1,2:-0.497770154417;RUNX1..3:-0.524518401303;EGR1..3:-0.546543723175;FOX{D1,D2}:-0.558962969013;EBF1:-0.574316535463;VSX1,2:-0.577735293581;POU2F1..3:-0.578790432464;MED-1{core}:-0.585069102932;FOXD3:-0.606035921664;MEF2{A,B,C,D}:-0.606127923488;FOX{F1,F2,J1}:-0.612046497412;ZNF238:-0.618601905042;CEBPA,B_DDIT3:-0.627693063771;SPI1:-0.632077128433;TFAP4:-0.676128713687;ATF2:-0.681562772881;RBPJ:-0.690230409621;DMAP1_NCOR{1,2}_SMARC:-0.691011139694;ATF4:-0.695899773597;CREB1:-0.704326053718;PATZ1:-0.7071719762;HMX1:-0.708785407964;STAT2,4,6:-0.716601717373;NANOG:-0.758426264573;FOXP3:-0.760302290862;SREBF1,2:-0.807377632879;ESR1:-0.808952075968;SPZ1:-0.825708275688;ZNF423:-0.834149676937;TGIF1:-0.836207788623;ESRRA:-0.879601654232;RFX2..5_RFXANK_RFXAP:-0.880285794703;NANOG{mouse}:-0.891133553754;RREB1:-0.892007988095;JUN:-0.941961813206;RORA:-1.05399424821;SOX5:-1.05687225018;TLX2:-1.1170209785;NFIL3:-1.16083481251;BPTF:-1.27150094618;PAX1,9:-1.91089370762 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10852-111F6;search_select_hide=table117:FF:10852-111F6 | |||
}} | }} | ||
Latest revision as of 15:09, 3 June 2020
| Name: | mesothelioma cell line:Mero-48a |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13068 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13068
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13068
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.924 |
| 10 | 10 | 0.474 |
| 100 | 100 | 0.836 |
| 101 | 101 | 0.194 |
| 102 | 102 | 0.648 |
| 103 | 103 | 0.447 |
| 104 | 104 | 0.306 |
| 105 | 105 | 0.0216 |
| 106 | 106 | 0.0685 |
| 107 | 107 | 0.746 |
| 108 | 108 | 0.847 |
| 109 | 109 | 0.744 |
| 11 | 11 | 0.823 |
| 110 | 110 | 0.966 |
| 111 | 111 | 0.567 |
| 112 | 112 | 0.519 |
| 113 | 113 | 0.0152 |
| 114 | 114 | 0.331 |
| 115 | 115 | 0.326 |
| 116 | 116 | 0.548 |
| 117 | 117 | 0.956 |
| 118 | 118 | 0.0646 |
| 119 | 119 | 0.62 |
| 12 | 12 | 0.694 |
| 120 | 120 | 0.0481 |
| 121 | 121 | 0.17 |
| 122 | 122 | 0.648 |
| 123 | 123 | 0.00645 |
| 124 | 124 | 0.0401 |
| 125 | 125 | 0.217 |
| 126 | 126 | 0.55 |
| 127 | 127 | 0.123 |
| 128 | 128 | 0.00783 |
| 129 | 129 | 0.372 |
| 13 | 13 | 0.577 |
| 130 | 130 | 0.565 |
| 131 | 131 | 0.149 |
| 132 | 132 | 0.762 |
| 133 | 133 | 0.908 |
| 134 | 134 | 0.243 |
| 135 | 135 | 0.0972 |
| 136 | 136 | 0.252 |
| 137 | 137 | 0.0484 |
| 138 | 138 | 0.419 |
| 139 | 139 | 0.184 |
| 14 | 14 | 0.439 |
| 140 | 140 | 0.313 |
| 141 | 141 | 0.0331 |
| 142 | 142 | 0.511 |
| 143 | 143 | 0.215 |
| 144 | 144 | 0.854 |
| 145 | 145 | 0.212 |
| 146 | 146 | 0.778 |
| 147 | 147 | 0.32 |
| 148 | 148 | 0.6 |
| 149 | 149 | 0.222 |
| 15 | 15 | 0.562 |
| 150 | 150 | 0.171 |
| 151 | 151 | 0.9 |
| 152 | 152 | 0.0811 |
| 153 | 153 | 0.768 |
| 154 | 154 | 0.304 |
| 155 | 155 | 0.0224 |
| 156 | 156 | 0.442 |
| 157 | 157 | 0.643 |
| 158 | 158 | 0.013 |
| 159 | 159 | 0.834 |
| 16 | 16 | 0.716 |
| 160 | 160 | 0.787 |
| 161 | 161 | 0.052 |
| 162 | 162 | 0.433 |
| 163 | 163 | 0.21 |
| 164 | 164 | 0.0268 |
| 165 | 165 | 0.398 |
| 166 | 166 | 0.603 |
| 167 | 167 | 0.783 |
| 168 | 168 | 0.913 |
| 169 | 169 | 0.362 |
| 17 | 17 | 0.355 |
| 18 | 18 | 0.458 |
| 19 | 19 | 0.807 |
| 2 | 2 | 0.767 |
| 20 | 20 | 0.307 |
| 21 | 21 | 0.0851 |
| 22 | 22 | 0.432 |
| 23 | 23 | 0.712 |
| 24 | 24 | 0.295 |
| 25 | 25 | 0.717 |
| 26 | 26 | 0.232 |
| 27 | 27 | 0.701 |
| 28 | 28 | 0.613 |
| 29 | 29 | 0.0215 |
| 3 | 3 | 0.595 |
| 30 | 30 | 0.684 |
| 31 | 31 | 0.568 |
| 32 | 32 | 0.0833 |
| 33 | 33 | 0.975 |
| 34 | 34 | 0.239 |
| 35 | 35 | 0.118 |
| 36 | 36 | 0.139 |
| 37 | 37 | 0.454 |
| 38 | 38 | 0.702 |
| 39 | 39 | 0.953 |
| 4 | 4 | 0.429 |
| 40 | 40 | 0.62 |
| 41 | 41 | 0.0749 |
| 42 | 42 | 0.858 |
| 43 | 43 | 0.0602 |
| 44 | 44 | 0.245 |
| 45 | 45 | 0.178 |
| 46 | 46 | 0.986 |
| 47 | 47 | 0.595 |
| 48 | 48 | 0.737 |
| 49 | 49 | 0.0565 |
| 5 | 5 | 0.205 |
| 50 | 50 | 0.781 |
| 51 | 51 | 0.673 |
| 52 | 52 | 0.347 |
| 53 | 53 | 0.236 |
| 54 | 54 | 0.599 |
| 55 | 55 | 0.153 |
| 56 | 56 | 0.874 |
| 57 | 57 | 0.378 |
| 58 | 58 | 0.338 |
| 59 | 59 | 0.794 |
| 6 | 6 | 0.642 |
| 60 | 60 | 0.151 |
| 61 | 61 | 0.43 |
| 62 | 62 | 0.741 |
| 63 | 63 | 0.408 |
| 64 | 64 | 0.546 |
| 65 | 65 | 0.278 |
| 66 | 66 | 0.251 |
| 67 | 67 | 0.933 |
| 68 | 68 | 0.539 |
| 69 | 69 | 0.282 |
| 7 | 7 | 0.302 |
| 70 | 70 | 0.832 |
| 71 | 71 | 0.778 |
| 72 | 72 | 0.597 |
| 73 | 73 | 0.0422 |
| 74 | 74 | 0.641 |
| 75 | 75 | 0.636 |
| 76 | 76 | 0.849 |
| 77 | 77 | 0.851 |
| 78 | 78 | 0.755 |
| 79 | 79 | 0.611 |
| 8 | 8 | 0.864 |
| 80 | 80 | 0.1 |
| 81 | 81 | 0.679 |
| 82 | 82 | 0.277 |
| 83 | 83 | 0.409 |
| 84 | 84 | 0.192 |
| 85 | 85 | 0.02 |
| 86 | 86 | 0.0352 |
| 87 | 87 | 0.189 |
| 88 | 88 | 0.601 |
| 89 | 89 | 0.836 |
| 9 | 9 | 0.146 |
| 90 | 90 | 0.295 |
| 91 | 91 | 0.748 |
| 92 | 92 | 0.452 |
| 93 | 93 | 0.415 |
| 94 | 94 | 0.773 |
| 95 | 95 | 0.674 |
| 96 | 96 | 0.977 |
| 97 | 97 | 0.996 |
| 98 | 98 | 0.0458 |
| 99 | 99 | 0.031 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13068
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
