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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008254
|DRA_sample_Accession=CAGE@SAMD00005911
|accession_numbers=CAGE;DRX008362;DRR009234;DRZ000659;DRZ002044
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005911
|accession_numbers=CAGE;DRX008362;DRR009234;DRZ000659;DRZ002044;DRZ012009;DRZ013394
|accession_numbers_RNASeq=sRNA-Seq;DRX037230;DRR041596;DRZ007238
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.35!221.75!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.59!38.01!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.58!99.79!TWIST1;;chr5:134369905..134369972,-!p1@PITX1!1.58!56.23!PITX1;;chr2:176969228..176969260,+!p1@HOXD11!1.43!26.13!HOXD11;;chr5:134369879..134369898,-!p2@PITX1!1.30!19.01!PITX1;;chr4:174451350..174451363,-!p3@HAND2!1.25!16.63!HAND2;;chr2:5832508..5832524,+!p1@SOX11!1.23!15.84!SOX11;;chr4:111544219..111544240,-!p1@PITX2!1.21!15.05!PITX2;;chr7:35293685..35293718,-!p1@TBX20!1.14!12.67!TBX20;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.14!12.67!HOXC5;;chr12:66218255..66218304,+!p3@HMGA2!1.11!31.68!HMGA2;;chr17:59477233..59477263,+!p1@TBX2!1.10!36.43!TBX2;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.26!FOXF1;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.48!HMGA2;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.09!HAND2;;chr12:115122318..115122331,-!p2@TBX3!1.05!10.30!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!52.27!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.50!HOXC9;;chr4:111558135..111558198,-!p2@PITX2!1.02!9.50!PITX2;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.50!HOXA9;;chr7:19157043..19157088,-!p2@TWIST1!0.97!21.38!TWIST1;;chr19:45260775..45260838,+!p5@BCL3!0.97!11.09!BCL3;;chr19:46801639..46801699,+!p1@HIF3A!0.95!7.92!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!0.95!7.92!HOXC10;;chr17:8027418..8027432,-!p1@HES7!0.95!7.92!HES7;;chr7:27224842..27224872,-!p1@HOXA11!0.95!7.92!HOXA11;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.13!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!0.91!7.13!HOXC8;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.88!TCF12;;chr12:66218212..66218244,+!p5@HMGA2!0.87!9.50!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.87!6.34!HOXC10;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.34!KDM5D;;chr3:141087393..141087426,+!p3@ZBTB38!0.85!25.34!ZBTB38;;chr14:62213758..62213774,+!p8@HIF1A!0.85!7.92!HIF1A;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.30!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!0.82!26.93!NR2F1;;chr17:41623692..41623715,-!p1@ETV4!0.82!25.34!ETV4;;chr7:27192185..27192209,-!p1@HOXA3!0.82!5.54!HOXA3;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.54!HOXD8;;chr20:42543441..42543497,+!p1@TOX2!0.81!26.13!TOX2;;chr5:176738887..176738934,-!p1@MXD3!0.80!38.01!MXD3;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.42!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.13!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.71!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!0.76!7.13!GATA6;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.75!HOXC10;;chr2:176969179..176969226,+!p2@HOXD11!0.76!4.75!HOXD11;;chr8:48650715..48650735,-!p1@CEBPD!0.75!663.66!CEBPD;;chr14:62162285..62162296,+!p3@HIF1A!0.74!26.13!HIF1A;;chr11:63684602..63684664,-!p1@RCOR2!0.74!9.50!RCOR2;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.93!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.18!TBX3;;chr19:38720294..38720348,-!p1@DPF1!0.73!5.54!DPF1;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.23!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.72!10.30!HOXB2;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.13!ZFP64;;chr11:65686732..65686756,+!p2@DRAP1!0.70!19.01!DRAP1;;chr17:59477275..59477286,+!p3@TBX2!0.70!5.54!TBX2;;chr1:170633262..170633285,+!p3@PRRX1!0.70!4.75!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.70!3.96!HOXB6;;chr12:54422217..54422239,+!p3@HOXC6!0.70!3.96!HOXC6;;chr2:239756739..239756755,+!p2@TWIST2!0.69!7.13!TWIST2;;chr17:41622765..41622821,-!p2@ETV4!0.69!6.34!ETV4;;chr11:120107344..120107351,+!p1@POU2F3!0.68!4.75!POU2F3;;chr14:62162258..62162269,+!p2@HIF1A!0.67!40.39!HIF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.64!12.67!NR2F1;;chr15:83953397..83953425,-!p1@BNC1!0.64!3.96!BNC1;;chr8:72756667..72756736,-!p2@MSC!0.63!5.54!MSC;;chr5:92920456..92920488,+!p9@NR2F1!0.63!3.96!NR2F1;;chr12:115122005..115122016,-!p3@TBX3!0.62!3.96!TBX3;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.17!CREB3L1;;chr12:115121587..115121597,-!p10@TBX3!0.62!3.17!TBX3;;chr12:115121802..115121814,-!p5@TBX3!0.62!3.17!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.62!3.17!TBX3;;chr12:54378984..54378996,+!p7@HOXC10!0.62!3.17!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.17!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.62!3.17!HOXC8;;chr18:3447536..3447542,+!p23@TGIF1!0.62!3.17!TGIF1;;chr19:58740449..58740456,+!p3@ZNF544!0.62!3.17!ZNF544;;chr4:111558118..111558133,-!p5@PITX2!0.62!3.17!PITX2;;chr7:27224795..27224840,-!p2@HOXA11!0.62!3.17!HOXA11;;chr12:7079780..7079791,-!p2@PHB2!0.61!19.01!PHB2;;chr6:45390269..45390298,+!p5@RUNX2!0.61!5.54!RUNX2;;chr6:85473156..85473210,-!p2@TBX18!0.61!3.96!TBX18;;chr14:62162224..62162254,+!p1@HIF1A!0.60!524.27!HIF1A;;chr12:66218183..66218209,+!p4@HMGA2!0.60!6.34!HMGA2;;chr6:45390025..45390076,+!p2@RUNX2!0.59!7.92!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.59!3.96!NFATC2;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.17!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.30!GATA6;;chr5:92918956..92918969,+!p4@NR2F1!0.58!3.17!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!0.57!3.17!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!0.56!4.75!FOXQ1;;chr6:45296048..45296082,+!p1@RUNX2!0.56!3.17!RUNX2;;chr20:42543506..42543549,+!p2@TOX2!0.55!7.13!TOX2;;chr19:45261550..45261641,+!p6@BCL3!0.55!4.75!BCL3;;chr18:47814010..47814021,-!p3@CXXC1!0.55!4.75!CXXC1;;chr19:22817119..22817145,+!p1@ZNF492!0.55!4.75!ZNF492;;chr17:41623075..41623101,-!p9@ETV4!0.55!3.17!ETV4;;chr11:19263160..19263176,-!p1@E2F8!0.55!3.17!E2F8;;chr16:8962853..8962878,-!p1@CARHSP1!0.54!183.73!CARHSP1;;chr3:141087339..141087387,+!p2@ZBTB38!0.54!31.68!ZBTB38;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.34!GLI2;;chr17:59477197..59477212,+!p2@TBX2!0.54!4.75!TBX2;;chr5:92919100..92919135,+!p3@NR2F1!0.54!3.17!NR2F1;;chr8:72756063..72756125,-!p1@MSC!0.53!5.54!MSC;;chr19:19617430..19617443,+!p9@GATAD2A!0.53!5.54!GATAD2A;;chr12:3068501..3068515,+!p4@TEAD4!0.53!4.75!TEAD4;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.96!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.53!3.96!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.53!2.38!ETV4;;chr18:19749504..19749515,+!p5@GATA6!0.53!2.38!GATA6;;chr11:65688877..65688891,+!p13@DRAP1!0.53!2.38!DRAP1;;chr11:76092029..76092038,-!p4@PRKRIR!0.53!2.38!PRKRIR;;chr12:115121770..115121781,-!p4@TBX3!0.53!2.38!TBX3;;chr12:54366975..54367001,+!p1@HOXC11!0.53!2.38!HOXC11;;chr12:54394059..54394088,+!p3@HOXC9!0.53!2.38!HOXC9;;chr12:54426831..54426836,+!p10@HOXC5!0.53!2.38!HOXC5;;chr14:62214151..62214164,+!p11@HIF1A!0.53!2.38!HIF1A;;chr7:27213893..27213954,-!p1@HOXA10!0.53!2.38!HOXA10;;chr7:27239703..27239715,-!p1@HOXA13!0.53!2.38!HOXA13;;chr7:27239740..27239759,-!p2@HOXA13!0.53!2.38!HOXA13;;chr4:111544254..111544270,-!p3@PITX2!0.53!2.38!PITX2;;chr17:41277372..41277418,-!p1@BRCA1!0.52!10.30!BRCA1;;chr12:66218378..66218401,+!p6@HMGA2!0.52!3.96!HMGA2;;chr15:37391588..37391604,-!p11@MEIS2!0.52!3.17!MEIS2;;chr9:73028814..73028895,-!p1@KLF9!0.51!28.51!KLF9;;chr18:3448455..3448480,+!p5@TGIF1!0.51!4.75!TGIF1;;chr6:45390300..45390335,+!p4@RUNX2!0.51!3.96!RUNX2;;chr2:46612334..46612349,+!p6@EPAS1!0.51!3.17!EPAS1;;chr17:47492236..47492251,-!p1@PHB!0.50!39.60!PHB;;chr20:48599506..48599526,+!p1@SNAI1!0.50!18.21!SNAI1;;chr11:65687362..65687436,+!p3@DRAP1!0.50!12.67!DRAP1;;chr4:56412978..56413003,-!p1@CLOCK!0.50!6.34!CLOCK;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.50!5.54!SOHLH2;;chr17:41623009..41623053,-!p4@ETV4!0.50!3.96!ETV4;;chr17:42295897..42295953,-!p10@UBTF!0.50!3.17!UBTF;;chr1:8926369..8926385,-!p12@ENO1!0.50!3.17!ENO1;;chr12:66218152..66218174,+!p10@HMGA2!0.50!2.38!HMGA2;;chr6:144329384..144329405,-!p1@PLAGL1!0.49!32.47!PLAGL1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!30.89!TAX1BP3;;chr1:8934931..8934947,-!p4@ENO1!0.49!8.71!ENO1;;chr16:86600426..86600441,+!p1@FOXC2!0.49!6.34!FOXC2;;chr16:29818199..29818216,+!p11@MAZ!0.49!3.96!MAZ;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.49!3.96!PCBP2;;chr15:37390482..37390572,-!p7@MEIS2!0.49!3.17!MEIS2;;chr9:73028598..73028617,-!p5@KLF9!0.48!3.96!KLF9;;chr14:62213827..62213853,+!p6@HIF1A!0.48!3.17!HIF1A;;chr9:77112244..77112262,+!p1@RORB!0.48!2.38!RORB;;chr6:31126291..31126399,+!p1@TCF19!0.47!25.34!TCF19;;chr20:32274179..32274213,-!p1@E2F1!0.47!17.42!E2F1;;chr8:49833948..49833973,-!p2@SNAI2!0.47!16.63!SNAI2;;chr11:65686952..65686975,+!p5@DRAP1!0.47!14.26!DRAP1;;chr20:48807587..48807603,+!p16@CEBPB!0.47!2.38!CEBPB;;chr17:46622205..46622218,-!p3@HOXB2!0.47!2.38!HOXB2;;chr16:2059754..2059777,-!p2@ZNF598!0.46!8.71!ZNF598;;chr12:27485762..27485776,+!p3@ARNTL2!0.46!6.34!ARNTL2;;chr6:85474299..85474324,-!p1@TBX18!0.46!3.96!TBX18;;chr12:2986206..2986258,-!p2@FOXM1!0.45!15.05!FOXM1;;chr11:47270436..47270464,+!p2@NR1H3!0.45!4.75!NR1H3;;chr12:66218003..66218018,+!p9@HMGA2!0.45!2.38!HMGA2;;chr5:150284461..150284481,-!p4@ZNF300!0.45!2.38!ZNF300;;chr1:23885981..23886002,-!p1@ID3!0.44!437.95!ID3;;chr20:42295713..42295738,+!p2@MYBL2!0.44!14.26!MYBL2;;chr1:164528445..164528459,+!p2@PBX1!0.44!7.13!PBX1;;chr17:46655730..46655791,-!p1@HOXB4!0.44!5.54!HOXB4;;chr8:48650982..48651023,-!p3@CEBPD!0.44!5.54!CEBPD;;chr8:72756023..72756055,-!p6@MSC!0.44!2.38!MSC;;chr1:247495210..247495226,-!p4@ZNF496!0.44!2.38!ZNF496;;chr19:10291229..10291247,-!p5@DNMT1!0.44!2.38!DNMT1;;chr2:169312600..169312606,+!p2@CERS6!0.43!3.17!CERS6;;chr12:66218443..66218461,+!p8@HMGA2!0.43!2.38!HMGA2;;chr19:45971246..45971265,+!p1@FOSB!0.42!44.35!FOSB;;chr5:138609782..138609826,+!p5@MATR3!0.42!15.05!MATR3;;chr15:37390850..37390909,-!p3@MEIS2!0.42!3.96!MEIS2;;chrX:119384566..119384585,+!p2@ZBTB33!0.42!3.17!ZBTB33;;chr11:113930291..113930339,+!p2@ZBTB16!0.42!3.17!ZBTB16;;chr11:6947720..6947812,+!p1@ZNF215!0.42!2.38!ZNF215;;chr17:3571863..3571881,-!p1@TAX1BP3!0.41!167.89!TAX1BP3;;chr12:3068544..3068597,+!p1@TEAD4!0.41!13.46!TEAD4;;chr5:137804484..137804498,+!p2@EGR1!0.41!8.71!EGR1;;chr1:153939955..153940009,+!p2@CREB3L4!0.41!4.75!CREB3L4;;chr2:121493492..121493537,+!p2@GLI2!0.41!3.17!GLI2;;chr9:137218262..137218273,+!p5@RXRA!0.41!3.17!RXRA;;chr2:2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1!0.13!0.79!EPAS1;;chr2:66662232..66662243,+!p5@MEIS1!0.13!0.79!MEIS1;;chr3:170075103..170075114,+!p5@SKIL!0.13!0.79!SKIL;;chr4:146402795..146402816,+!p7@SMAD1!0.13!0.79!SMAD1;;chr4:87968291..87968314,+!p14@AFF1!0.13!0.79!AFF1;;chr19:45254529..45254561,+!p10@BCL3!0.13!0.79!BCL3;;chr19:58144589..58144603,+!p2@ZNF211!0.13!0.79!ZNF211;;chr21:36260773..36260804,-!p7@RUNX1!0.13!0.79!RUNX1;;chr15:35280509..35280520,-!p2@ZNF770!0.13!0.79!ZNF770;;chr15:42783258..42783270,-!p4@ZFP106!0.13!0.79!ZFP106;;chr17:46621101..46621143,-!p7@HOXB2!0.13!0.79!HOXB2;;chr19:11750566..11750627,+!p1@ZNF833P!0.13!0.79!ZNF833P;;chr19:12551824..12551846,-!p2@ZNF443!0.13!0.79!ZNF443;;chr19:13136241..13136258,+!p7@NFIX!0.13!0.79!NFIX;;chr19:3572925..3573014,+!p1@HMG20B!0.12!34.85!HMG20B;;chr3:129158768..129158819,-!p1@MBD4!0.12!17.42!MBD4;;chr3:52001448..52001478,-!p2@PCBP4!0.12!15.84!PCBP4;;chr11:47236489..47236567,+!p2@DDB2!0.12!15.84!DDB2;;chr12:51477368..51477386,-!p1@CSRNP2!0.12!12.67!CSRNP2;;chr12:19592405..19592492,+!p2@AEBP2!0.12!9.50!AEBP2;;chr11:46722560..46722595,+!p1@ZNF408!0.12!5.54!ZNF408;;chr7:14029283..14029311,-!p1@ETV1!0.12!5.54!ETV1;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.12!3.96!ZNF747;;chr7:99156314..99156372,+!p4@ZNF655!0.12!3.17!ZNF655;;chr7:6676986..6677005,+!p2@ENST00000427912!0.12!2.38!ZNF316;;chr12:57919293..57919311,+!p3@MBD6!0.12!2.38!MBD6;;chr9:137218362..137218385,+!p4@RXRA!0.12!2.38!RXRA;;chr19:52674853..52674892,-!p2@ZNF836!0.12!2.38!ZNF836;;chr10:44101902..44101932,+!p2@ZNF485!0.12!1.58!ZNF485;;chr18:47814186..47814232,-!p2@CXXC1!0.12!1.58!CXXC1;;chr15:71184837..71184877,-!p2@THAP10!0.12!0.79!THAP10;;chr19:16435523..16435619,+!p2@KLF2!0.12!0.79!KLF2;;chr19:49864746..49864780,-!p2@TEAD2!0.12!0.79!TEAD2;;chr19:50435736..50435781,+!p3@ATF5!0.12!0.79!ATF5;;chr1:120190761..120190782,-!p2@ZNF697!0.12!0.79!ZNF697;;chr3:126076264..126076305,-!p2@KLF15!0.12!0.79!KLF15;;chr3:141747441..141747452,-!p4@TFDP2!0.12!0.79!TFDP2;;chr3:14989024..14989041,+!p3@NR2C2!0.12!0.79!NR2C2;;chr6:28235131..28235151,+!p2@ZNF187!0.12!0.79!ZNF187;;chr10:35415951..35415975,+!p8@CREM!0.12!0.79!CREM;;chr11:64764435..64764449,-!p1@BATF2!0.12!0.79!BATF2;;chr12:10865870..10865888,-!p6@CSDA!0.12!0.79!CSDA;;chr19:10305581..10305646,-!p1@DNMT1!0.11!40.39!DNMT1;;chr19:6279932..6280000,-!p1@MLLT1!0.11!29.30!MLLT1;;chr18:47807845..47807918,-!p1@MBD1!0.11!19.80!MBD1;;chr12:50479109..50479146,+!p2@SMARCD1!0.11!19.01!SMARCD1;;chr14:64970494..64970578,-!p1@ZBTB25!0.11!11.09!ZBTB25;;chr17:5015129..5015187,-!p1@ZNF232!0.11!5.54!ZNF232;;chr1:249153268..249153298,-!p1@ZNF692!0.11!5.54!ZNF692;;chr6:108882109..108882173,+!p2@FOXO3!0.11!5.54!FOXO3;;chr16:2059797..2059837,-!p1@ZNF598!0.11!3.96!ZNF598;;chr1:153940354..153940395,+!p1@CREB3L4!0.11!3.96!CREB3L4;;chr7:148581327..148581347,-!p2@EZH2!0.11!3.17!EZH2;;chr14:74353576..74353589,+!p3@ZNF410!0.11!3.17!ZNF410;;chr12:72057747..72057854,+!p4@THAP2!0.11!2.38!THAP2;;chr2:19558373..19558392,-!p1@OSR1!0.11!2.38!OSR1;;chr1:8763463..8763499,-!p6@RERE!0.11!2.38!RERE;;chr16:4323015..4323067,-!p2@TFAP4!0.11!2.38!TFAP4;;chr15:96873861..96873872,+!p9@NR2F2!0.11!1.58!NR2F2;;chr2:11606283..11606289,-!p1@E2F6!0.11!1.58!E2F6;;chr4:95128841..95128865,+!p4@SMARCAD1!0.11!1.58!SMARCAD1;;chr5:178157700..178157734,-!p3@ZNF354A!0.11!1.58!ZNF354A;;chr7:21467802..21467840,+!p3@SP4!0.11!1.58!SP4;;chr12:80084862..80084884,-!p7@PAWR!0.11!1.58!PAWR;;chr19:56652621..56652641,+!p2@ZNF444!0.11!1.58!ZNF444;;
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.35!221.75!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.59!38.01!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.58!99.79!TWIST1;;chr5:134369905..134369972,-!p1@PITX1!1.58!56.23!PITX1;;chr2:176969228..176969260,+!p1@HOXD11!1.43!26.13!HOXD11;;chr5:134369879..134369898,-!p2@PITX1!1.30!19.01!PITX1;;chr4:174451350..174451363,-!p3@HAND2!1.25!16.63!HAND2;;chr2:5832508..5832524,+!p1@SOX11!1.23!15.84!SOX11;;chr4:111544219..111544240,-!p1@PITX2!1.21!15.05!PITX2;;chr7:35293685..35293718,-!p1@TBX20!1.14!12.67!TBX20;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.14!12.67!HOXC5;;chr12:66218255..66218304,+!p3@HMGA2!1.11!31.68!HMGA2;;chr17:59477233..59477263,+!p1@TBX2!1.10!36.43!TBX2;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.26!FOXF1;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.48!HMGA2;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.09!HAND2;;chr12:115122318..115122331,-!p2@TBX3!1.05!10.30!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!52.27!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.50!HOXC9;;chr4:111558135..111558198,-!p2@PITX2!1.02!9.50!PITX2;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.50!HOXA9;;chr7:19157043..19157088,-!p2@TWIST1!0.97!21.38!TWIST1;;chr19:45260775..45260838,+!p5@BCL3!0.97!11.09!BCL3;;chr19:46801639..46801699,+!p1@HIF3A!0.95!7.92!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!0.95!7.92!HOXC10;;chr17:8027418..8027432,-!p1@HES7!0.95!7.92!HES7;;chr7:27224842..27224872,-!p1@HOXA11!0.95!7.92!HOXA11;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.13!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!0.91!7.13!HOXC8;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.88!TCF12;;chr12:66218212..66218244,+!p5@HMGA2!0.87!9.50!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.87!6.34!HOXC10;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.34!KDM5D;;chr3:141087393..141087426,+!p3@ZBTB38!0.85!25.34!ZBTB38;;chr14:62213758..62213774,+!p8@HIF1A!0.85!7.92!HIF1A;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.30!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!0.82!26.93!NR2F1;;chr17:41623692..41623715,-!p1@ETV4!0.82!25.34!ETV4;;chr7:27192185..27192209,-!p1@HOXA3!0.82!5.54!HOXA3;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.54!HOXD8;;chr20:42543441..42543497,+!p1@TOX2!0.81!26.13!TOX2;;chr5:176738887..176738934,-!p1@MXD3!0.80!38.01!MXD3;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.42!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.13!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.71!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!0.76!7.13!GATA6;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.75!HOXC10;;chr2:176969179..176969226,+!p2@HOXD11!0.76!4.75!HOXD11;;chr8:48650715..48650735,-!p1@CEBPD!0.75!663.66!CEBPD;;chr14:62162285..62162296,+!p3@HIF1A!0.74!26.13!HIF1A;;chr11:63684602..63684664,-!p1@RCOR2!0.74!9.50!RCOR2;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.93!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.18!TBX3;;chr19:38720294..38720348,-!p1@DPF1!0.73!5.54!DPF1;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.23!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.72!10.30!HOXB2;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.13!ZFP64;;chr11:65686732..65686756,+!p2@DRAP1!0.70!19.01!DRAP1;;chr17:59477275..59477286,+!p3@TBX2!0.70!5.54!TBX2;;chr1:170633262..170633285,+!p3@PRRX1!0.70!4.75!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.70!3.96!HOXB6;;chr12:54422217..54422239,+!p3@HOXC6!0.70!3.96!HOXC6;;chr2:239756739..239756755,+!p2@TWIST2!0.69!7.13!TWIST2;;chr17:41622765..41622821,-!p2@ETV4!0.69!6.34!ETV4;;chr11:120107344..120107351,+!p1@POU2F3!0.68!4.75!POU2F3;;chr14:62162258..62162269,+!p2@HIF1A!0.67!40.39!HIF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.64!12.67!NR2F1;;chr15:83953397..83953425,-!p1@BNC1!0.64!3.96!BNC1;;chr8:72756667..72756736,-!p2@MSC!0.63!5.54!MSC;;chr5:92920456..92920488,+!p9@NR2F1!0.63!3.96!NR2F1;;chr12:115122005..115122016,-!p3@TBX3!0.62!3.96!TBX3;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.17!CREB3L1;;chr12:115121587..115121597,-!p10@TBX3!0.62!3.17!TBX3;;chr12:115121802..115121814,-!p5@TBX3!0.62!3.17!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.62!3.17!TBX3;;chr12:54378984..54378996,+!p7@HOXC10!0.62!3.17!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.17!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.62!3.17!HOXC8;;chr18:3447536..3447542,+!p23@TGIF1!0.62!3.17!TGIF1;;chr19:58740449..58740456,+!p3@ZNF544!0.62!3.17!ZNF544;;chr4:111558118..111558133,-!p5@PITX2!0.62!3.17!PITX2;;chr7:27224795..27224840,-!p2@HOXA11!0.62!3.17!HOXA11;;chr12:7079780..7079791,-!p2@PHB2!0.61!19.01!PHB2;;chr6:45390269..45390298,+!p5@RUNX2!0.61!5.54!RUNX2;;chr6:85473156..85473210,-!p2@TBX18!0.61!3.96!TBX18;;chr14:62162224..62162254,+!p1@HIF1A!0.60!524.27!HIF1A;;chr12:66218183..66218209,+!p4@HMGA2!0.60!6.34!HMGA2;;chr6:45390025..45390076,+!p2@RUNX2!0.59!7.92!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.59!3.96!NFATC2;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.17!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.30!GATA6;;chr5:92918956..9291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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
|ffid_belonging_in_development=CL:0000134
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|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
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|has_quality=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg38.nobarcode.ctss.bed.gz
|id=FF:11214-116A8
|id=FF:11214-116A8
|is_a=EFO:0002091;;FF:0000094
|is_a=EFO:0002091;;FF:0000094
|is_obsolete=
|is_obsolete=
|library_id=CNhs12492
|library_id=CNhs12492
|library_id_phase_based=2:CNhs12492
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11214
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GCCAAT.11214
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11214
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GCCAAT.11214
|name=Mesenchymal stem cells - umbilical, donor0
|name=Mesenchymal stem cells - umbilical, donor0
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
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|profile_cagescan=,,,
|profile_hcage=CNhs12492,LSID916,release011,COMPLETED
|profile_hcage=CNhs12492,LSID916,release011,COMPLETED
|profile_rnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=PBX1:1.5055953535;NR1H4:1.40772840333;NR5A1,2:1.39354109734;HSF1,2:1.25034777797;HOX{A5,B5}:1.23388341316;EN1,2:1.18250601513;RXR{A,B,G}:1.1311998202;HES1:1.11003537043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10057870334;CDC5L:1.08187799555;IKZF1:1.06876290949;E2F1..5:0.916886105006;GTF2A1,2:0.883692510376;NR3C1:0.835763990034;STAT5{A,B}:0.775658234274;POU2F1..3:0.743818127495;TBP:0.740122720635;NFY{A,B,C}:0.677331929217;LHX3,4:0.666349246411;YY1:0.648203669415;MYB:0.633010940211;NKX3-1:0.614557942658;TFAP4:0.594103290856;HAND1,2:0.589199957971;UFEwm:0.584434028032;AIRE:0.577677060828;HOXA9_MEIS1:0.577192230081;TAL1_TCF{3,4,12}:0.574931987896;ESR1:0.573788443676;PAX8:0.568402333411;PPARG:0.564092966758;FOXL1:0.563074269324;LEF1_TCF7_TCF7L1,2:0.55353428422;GLI1..3:0.547980733415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.545426817227;GFI1:0.539265462856;NR6A1:0.532832447098;EBF1:0.530353047104;GFI1B:0.520046701876;ARID5B:0.50157550151;ZNF384:0.493873008006;ELK1,4_GABP{A,B1}:0.477516801649;NANOG{mouse}:0.473590675188;ZNF238:0.46453259889;SRF:0.458170923075;ONECUT1,2:0.411582966251;KLF4:0.391299414694;TFDP1:0.361102216778;PRRX1,2:0.35283106602;NKX2-2,8:0.349609117045;TP53:0.330084774571;SOX5:0.329694155484;ALX4:0.284570409886;PAX1,9:0.255175249439;TEAD1:0.25449477524;FOXD3:0.244408568988;ATF6:0.235135428031;AR:0.224380433816;PAX5:0.223676350554;HNF4A_NR2F1,2:0.206717827895;SOX17:0.204449912599;MAFB:0.200195283148;ZNF143:0.186476558029;NFE2L2:0.182223720467;CRX:0.17026441542;ESRRA:0.149638452441;GZF1:0.143685820145;TLX1..3_NFIC{dimer}:0.131959741289;HNF1A:0.126294240484;POU3F1..4:0.124942568809;MYBL2:0.121063287102;HOX{A4,D4}:0.109260861737;RXRA_VDR{dimer}:0.103362325349;NFATC1..3:0.0820180891193;NKX6-1,2:0.0670510444085;HLF:0.055045883544;TBX4,5:0.0213681683951;RFX1:0.00670476565108;NRF1:0.000968478144622;FOS_FOS{B,L1}_JUN{B,D}:-0.00132855224116;BACH2:-0.00176039889389;TOPORS:-0.0108711231868;SPZ1:-0.0143064459341;POU5F1:-0.0300465361626;XBP1:-0.0398462306086;EVI1:-0.0561171606592;CEBPA,B_DDIT3:-0.0606471367907;TFCP2:-0.0649235693468;RUNX1..3:-0.0701130476323;NFE2:-0.0713745818233;DBP:-0.0717010762502;ADNP_IRX_SIX_ZHX:-0.0725139381223;POU6F1:-0.09382928737;FOX{F1,F2,J1}:-0.143630692334;NFIX:-0.173478157325;MEF2{A,B,C,D}:-0.174189768818;NANOG:-0.191168505107;RORA:-0.195345464888;FOSL2:-0.197456023692;GATA6:-0.21051138963;ELF1,2,4:-0.221696765644;SMAD1..7,9:-0.224729682625;NFKB1_REL_RELA:-0.228105248391;REST:-0.239605668521;BPTF:-0.241678034596;PAX4:-0.248521590304;ZNF423:-0.267024238005;bHLH_family:-0.267918368656;LMO2:-0.30151772006;PRDM1:-0.324982914047;MTF1:-0.325674605217;CDX1,2,4:-0.335410127801;NKX2-1,4:-0.339948842266;ALX1:-0.342473689887;NKX3-2:-0.346063908248;XCPE1{core}:-0.346800032052;SOX{8,9,10}:-0.359272863169;OCT4_SOX2{dimer}:-0.363394704669;FOX{I1,J2}:-0.366998736848;JUN:-0.374094282758;STAT2,4,6:-0.374286388666;T:-0.380433187109;GTF2I:-0.385557201343;TEF:-0.399072699377;NFIL3:-0.401221981352;CUX2:-0.406500501376;AHR_ARNT_ARNT2:-0.409976874861;DMAP1_NCOR{1,2}_SMARC:-0.413515713129;PAX3,7:-0.430852993417;SPIB:-0.43481088406;ZIC1..3:-0.436376756417;ZNF148:-0.439501357474;FOXA2:-0.441656169106;VSX1,2:-0.447426961402;SNAI1..3:-0.457848239321;FOXM1:-0.461142652324;HIF1A:-0.461190612252;PAX6:-0.461521785104;POU1F1:-0.466334711984;ATF2:-0.466671529004;ZBTB6:-0.47678499994;NHLH1,2:-0.481675060541;NKX2-3_NKX2-5:-0.483576171033;PATZ1:-0.513814621341;FOXQ1:-0.51522171787;CREB1:-0.517092976428;RREB1:-0.529698993607;HOX{A6,A7,B6,B7}:-0.533549005984;FOXP3:-0.541887046707;HMGA1,2:-0.547986164353;SOX2:-0.560845459733;STAT1,3:-0.566085099629;ETS1,2:-0.582553666145;SPI1:-0.591424920113;GCM1,2:-0.614696771837;ZBTB16:-0.633057296125;GATA4:-0.643744384189;NFE2L1:-0.654983063298;FOXP1:-0.656173970267;HBP1_HMGB_SSRP1_UBTF:-0.657151933919;HIC1:-0.667532136115;ZEB1:-0.675785870803;FOX{D1,D2}:-0.701709382598;PITX1..3:-0.710700899757;TLX2:-0.711594774097;ATF5_CREB3:-0.718703469277;PAX2:-0.723227026306;MAZ:-0.724117124741;IRF7:-0.728396763962;BREu{core}:-0.733262433011;ATF4:-0.765810019223;HMX1:-0.808002650966;IRF1,2:-0.831652340107;RBPJ:-0.847231203619;MTE{core}:-0.848210219409;PDX1:-0.85564155401;RFX2..5_RFXANK_RFXAP:-0.859770534805;TFAP2B:-0.86409945899;SP1:-0.888480742269;ZFP161:-0.914598318406;MZF1:-0.925327868331;TFAP2{A,C}:-0.938410116911;MED-1{core}:-1.0098924392;MYFfamily:-1.01385735811;FOXN1:-1.06691075732;FOXO1,3,4:-1.10233723162;TGIF1:-1.13204844681;MYOD1:-1.14115364053;IKZF2:-1.14406672153;EP300:-1.1945690831;EGR1..3:-1.24874174434;SREBF1,2:-1.43944080192
|top_motifs=PBX1:1.5055953535;NR1H4:1.40772840333;NR5A1,2:1.39354109734;HSF1,2:1.25034777797;HOX{A5,B5}:1.23388341316;EN1,2:1.18250601513;RXR{A,B,G}:1.1311998202;HES1:1.11003537043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10057870334;CDC5L:1.08187799555;IKZF1:1.06876290949;E2F1..5:0.916886105006;GTF2A1,2:0.883692510376;NR3C1:0.835763990034;STAT5{A,B}:0.775658234274;POU2F1..3:0.743818127495;TBP:0.740122720635;NFY{A,B,C}:0.677331929217;LHX3,4:0.666349246411;YY1:0.648203669415;MYB:0.633010940211;NKX3-1:0.614557942658;TFAP4:0.594103290856;HAND1,2:0.589199957971;UFEwm:0.584434028032;AIRE:0.577677060828;HOXA9_MEIS1:0.577192230081;TAL1_TCF{3,4,12}:0.574931987896;ESR1:0.573788443676;PAX8:0.568402333411;PPARG:0.564092966758;FOXL1:0.563074269324;LEF1_TCF7_TCF7L1,2:0.55353428422;GLI1..3:0.547980733415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.545426817227;GFI1:0.539265462856;NR6A1:0.532832447098;EBF1:0.530353047104;GFI1B:0.520046701876;ARID5B:0.50157550151;ZNF384:0.493873008006;ELK1,4_GABP{A,B1}:0.477516801649;NANOG{mouse}:0.473590675188;ZNF238:0.46453259889;SRF:0.458170923075;ONECUT1,2:0.411582966251;KLF4:0.391299414694;TFDP1:0.361102216778;PRRX1,2:0.35283106602;NKX2-2,8:0.349609117045;TP53:0.330084774571;SOX5:0.329694155484;ALX4:0.284570409886;PAX1,9:0.255175249439;TEAD1:0.25449477524;FOXD3:0.244408568988;ATF6:0.235135428031;AR:0.224380433816;PAX5:0.223676350554;HNF4A_NR2F1,2:0.206717827895;SOX17:0.204449912599;MAFB:0.200195283148;ZNF143:0.186476558029;NFE2L2:0.182223720467;CRX:0.17026441542;ESRRA:0.149638452441;GZF1:0.143685820145;TLX1..3_NFIC{dimer}:0.131959741289;HNF1A:0.126294240484;POU3F1..4:0.124942568809;MYBL2:0.121063287102;HOX{A4,D4}:0.109260861737;RXRA_VDR{dimer}:0.103362325349;NFATC1..3:0.0820180891193;NKX6-1,2:0.0670510444085;HLF:0.055045883544;TBX4,5:0.0213681683951;RFX1:0.00670476565108;NRF1:0.000968478144622;FOS_FOS{B,L1}_JUN{B,D}:-0.00132855224116;BACH2:-0.00176039889389;TOPORS:-0.0108711231868;SPZ1:-0.0143064459341;POU5F1:-0.0300465361626;XBP1:-0.0398462306086;EVI1:-0.0561171606592;CEBPA,B_DDIT3:-0.0606471367907;TFCP2:-0.0649235693468;RUNX1..3:-0.0701130476323;NFE2:-0.0713745818233;DBP:-0.0717010762502;ADNP_IRX_SIX_ZHX:-0.0725139381223;POU6F1:-0.09382928737;FOX{F1,F2,J1}:-0.143630692334;NFIX:-0.173478157325;MEF2{A,B,C,D}:-0.174189768818;NANOG:-0.191168505107;RORA:-0.195345464888;FOSL2:-0.197456023692;GATA6:-0.21051138963;ELF1,2,4:-0.221696765644;SMAD1..7,9:-0.224729682625;NFKB1_REL_RELA:-0.228105248391;REST:-0.239605668521;BPTF:-0.241678034596;PAX4:-0.248521590304;ZNF423:-0.267024238005;bHLH_family:-0.267918368656;LMO2:-0.30151772006;PRDM1:-0.324982914047;MTF1:-0.325674605217;CDX1,2,4:-0.335410127801;NKX2-1,4:-0.339948842266;ALX1:-0.342473689887;NKX3-2:-0.346063908248;XCPE1{core}:-0.346800032052;SOX{8,9,10}:-0.359272863169;OCT4_SOX2{dimer}:-0.363394704669;FOX{I1,J2}:-0.366998736848;JUN:-0.374094282758;STAT2,4,6:-0.374286388666;T:-0.380433187109;GTF2I:-0.385557201343;TEF:-0.399072699377;NFIL3:-0.401221981352;CUX2:-0.406500501376;AHR_ARNT_ARNT2:-0.409976874861;DMAP1_NCOR{1,2}_SMARC:-0.413515713129;PAX3,7:-0.430852993417;SPIB:-0.43481088406;ZIC1..3:-0.436376756417;ZNF148:-0.439501357474;FOXA2:-0.441656169106;VSX1,2:-0.447426961402;SNAI1..3:-0.457848239321;FOXM1:-0.461142652324;HIF1A:-0.461190612252;PAX6:-0.461521785104;POU1F1:-0.466334711984;ATF2:-0.466671529004;ZBTB6:-0.47678499994;NHLH1,2:-0.481675060541;NKX2-3_NKX2-5:-0.483576171033;PATZ1:-0.513814621341;FOXQ1:-0.51522171787;CREB1:-0.517092976428;RREB1:-0.529698993607;HOX{A6,A7,B6,B7}:-0.533549005984;FOXP3:-0.541887046707;HMGA1,2:-0.547986164353;SOX2:-0.560845459733;STAT1,3:-0.566085099629;ETS1,2:-0.582553666145;SPI1:-0.591424920113;GCM1,2:-0.614696771837;ZBTB16:-0.633057296125;GATA4:-0.643744384189;NFE2L1:-0.654983063298;FOXP1:-0.656173970267;HBP1_HMGB_SSRP1_UBTF:-0.657151933919;HIC1:-0.667532136115;ZEB1:-0.675785870803;FOX{D1,D2}:-0.701709382598;PITX1..3:-0.710700899757;TLX2:-0.711594774097;ATF5_CREB3:-0.718703469277;PAX2:-0.723227026306;MAZ:-0.724117124741;IRF7:-0.728396763962;BREu{core}:-0.733262433011;ATF4:-0.765810019223;HMX1:-0.808002650966;IRF1,2:-0.831652340107;RBPJ:-0.847231203619;MTE{core}:-0.848210219409;PDX1:-0.85564155401;RFX2..5_RFXANK_RFXAP:-0.859770534805;TFAP2B:-0.86409945899;SP1:-0.888480742269;ZFP161:-0.914598318406;MZF1:-0.925327868331;TFAP2{A,C}:-0.938410116911;MED-1{core}:-1.0098924392;MYFfamily:-1.01385735811;FOXN1:-1.06691075732;FOXO1,3,4:-1.10233723162;TGIF1:-1.13204844681;MYOD1:-1.14115364053;IKZF2:-1.14406672153;EP300:-1.1945690831;EGR1..3:-1.24874174434;SREBF1,2:-1.43944080192
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11214-116A8;search_select_hide=table117:FF:11214-116A8
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:Mesenchymal stem cells - umbilical, donor0
Species:Human (Homo sapiens)
Library ID:CNhs12492
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number7535
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005911
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12492 CAGE DRX008362 DRR009234
Accession ID Hg19

Library idBAMCTSS
CNhs12492 DRZ000659 DRZ002044
Accession ID Hg38

Library idBAMCTSS
CNhs12492 DRZ012009 DRZ013394
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005911
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GCCAAT sRNA-Seq DRX037230 DRR041596
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GCCAAT DRZ007238


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0968
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.412
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.253
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0682
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.313
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.471
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.253
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0918
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.253
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.813
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.024
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.568
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.412
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.722
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.865
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.412
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.412
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12492

Jaspar motifP-value
MA0002.20.789
MA0003.10.414
MA0004.10.731
MA0006.10.737
MA0007.10.0524
MA0009.10.815
MA0014.10.918
MA0017.10.0211
MA0018.20.0019
MA0019.10.293
MA0024.10.0342
MA0025.10.00234
MA0027.10.479
MA0028.10.0951
MA0029.10.746
MA0030.10.00181
MA0031.10.0232
MA0035.20.315
MA0038.10.0381
MA0039.20.883
MA0040.10.528
MA0041.10.951
MA0042.10.569
MA0043.10.00858
MA0046.10.764
MA0047.20.983
MA0048.10.147
MA0050.17.91765e-8
MA0051.12.79958e-5
MA0052.10.14
MA0055.17.99598e-4
MA0057.10.371
MA0058.10.822
MA0059.10.0045
MA0060.10.00549
MA0061.10.549
MA0062.20.787
MA0065.20.0169
MA0066.10.0595
MA0067.10.0237
MA0068.10.269
MA0069.10.669
MA0070.10.35
MA0071.10.0581
MA0072.10.961
MA0073.10.769
MA0074.10.192
MA0076.10.509
MA0077.10.287
MA0078.10.634
MA0079.20.142
MA0080.23.94887e-7
MA0081.10.0995
MA0083.10.00991
MA0084.10.109
MA0087.10.944
MA0088.10.0135
MA0090.10.155
MA0091.10.068
MA0092.10.176
MA0093.10.784
MA0099.20.298
MA0100.10.172
MA0101.10.874
MA0102.20.115
MA0103.10.638
MA0104.20.136
MA0105.10.00922
MA0106.10.0401
MA0107.10.562
MA0108.20.00468
MA0111.10.41
MA0112.20.00132
MA0113.10.0441
MA0114.10.0287
MA0115.10.197
MA0116.10.009
MA0117.10.774
MA0119.10.0284
MA0122.10.739
MA0124.10.89
MA0125.10.83
MA0131.10.712
MA0135.10.127
MA0136.18.68068e-4
MA0137.20.895
MA0138.20.171
MA0139.10.426
MA0140.10.0963
MA0141.10.0248
MA0142.10.788
MA0143.10.875
MA0144.10.825
MA0145.10.319
MA0146.10.109
MA0147.10.0655
MA0148.10.575
MA0149.10.239
MA0150.10.829
MA0152.10.59
MA0153.10.557
MA0154.10.0869
MA0155.10.469
MA0156.10.255
MA0157.10.115
MA0159.10.268
MA0160.10.285
MA0162.10.0706
MA0163.12.75043e-7
MA0164.10.447
MA0258.10.0205
MA0259.10.25



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12492

Novel motifP-value
10.0242
100.12
1000.127
1010.609
1020.693
1030.0626
1040.0553
1050.808
1060.603
1070.233
1080.924
1090.0112
110.0231
1100.0207
1110.602
1120.844
1130.751
1140.253
1150.743
1160.0139
1170.168
1180.13
1190.429
120.538
1200.037
1210.805
1220.448
1230.417
1240.94
1250.403
1260.416
1270.0747
1280.405
1290.842
130.0543
1300.0596
1310.385
1320.654
1330.335
1340.886
1350.729
1360.231
1370.133
1380.0729
1390.811
140.653
1400.795
1410.809
1420.466
1430.185
1440.754
1450.497
1460.0689
1470.232
1480.11
1490.199
150.23
1500.583
1510.623
1520.43
1530.334
1540.667
1550.352
1560.54
1570.859
1580.193
1590.425
160.0503
1600.0202
1610.329
1620.355
1630.687
1640.255
1650.756
1660.626
1670.226
1680.514
1690.0335
170.242
180.288
190.144
20.778
200.986
210.64
220.293
230.947
240.0902
250.635
260.0129
270.525
280.322
290.0899
30.0701
300.902
310.582
327.59088e-6
330.0838
340.701
350.581
360.0644
370.0435
380.285
390.313
40.818
400.015
410.265
420.259
430.194
440.165
450.91
460.0513
470.042
480.0401
490.256
50.819
500.351
510.177
520.518
530.509
540.858
550.93
560.558
570.179
580.879
590.0817
60.751
600.973
610.234
620.371
630.139
640.0511
650.158
660.133
670.325
680.865
690.286
70.396
700.344
710.0121
720.628
730.202
740.465
750.212
760.663
770.102
780.66
790.042
80.0116
800.94
810.363
820.384
830.0643
840.275
850.536
860.898
870.244
880.52
890.0254
90.504
900.705
910.992
920.983
930.591
940.116
950.0647
960.597
970.834
980.436
990.001



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12492


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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