FF:11214-116A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005911 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005911 | ||
|accession_numbers=CAGE;DRX008362;DRR009234;DRZ000659;DRZ002044;DRZ012009;DRZ013394 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037230;DRR041596;DRZ007238 | |||
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11214-116A8 | |id=FF:11214-116A8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000094 | ||
|is_obsolete= | |||
|library_id=CNhs12492 | |||
|library_id_phase_based=2:CNhs12492 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11214 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GCCAAT.11214 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11214 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GCCAAT.11214 | |||
|name=Mesenchymal stem cells - umbilical, donor0 | |name=Mesenchymal stem cells - umbilical, donor0 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12492,LSID916,release011,COMPLETED | |profile_hcage=CNhs12492,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=7535 | |rna_catalog_number=7535 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116A8 | |rna_tube_id=116A8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.GCCAAT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.39302849255021e-239!GO:0043231;intracellular membrane-bound organelle;3.22856492412117e-197!GO:0043227;membrane-bound organelle;6.78630155600479e-197!GO:0043226;organelle;1.75506440358062e-195!GO:0043229;intracellular organelle;3.83384403641088e-195!GO:0005737;cytoplasm;2.54210197497077e-194!GO:0044422;organelle part;2.96320730583556e-170!GO:0044446;intracellular organelle part;8.07221001852037e-169!GO:0044444;cytoplasmic part;1.18192048244638e-156!GO:0032991;macromolecular complex;6.1034326987297e-116!GO:0030529;ribonucleoprotein complex;7.70236681248562e-107!GO:0005739;mitochondrion;6.31763102916592e-97!GO:0044237;cellular metabolic process;1.12473124903946e-93!GO:0044238;primary metabolic process;6.11751531777745e-90!GO:0043233;organelle lumen;1.93021330915169e-88!GO:0031974;membrane-enclosed lumen;1.93021330915169e-88!GO:0044428;nuclear part;7.74555628428247e-79!GO:0043170;macromolecule metabolic process;1.22588352111385e-78!GO:0003723;RNA binding;5.76559093442602e-74!GO:0005634;nucleus;3.21577310770576e-67!GO:0005840;ribosome;2.60711244101822e-66!GO:0005515;protein binding;1.33828152562546e-65!GO:0044429;mitochondrial part;3.57046951070944e-63!GO:0006412;translation;9.94962062783606e-61!GO:0006396;RNA processing;5.0147993260884e-58!GO:0003735;structural constituent of ribosome;5.0147993260884e-58!GO:0009058;biosynthetic process;2.15846713066157e-57!GO:0031090;organelle membrane;2.17439482940393e-56!GO:0043234;protein complex;2.35550754701593e-56!GO:0044249;cellular biosynthetic process;8.80363087005171e-55!GO:0031967;organelle envelope;6.75277382873111e-51!GO:0031975;envelope;1.7618044188059e-50!GO:0009059;macromolecule biosynthetic process;5.65857201267821e-50!GO:0019538;protein metabolic process;9.41251020978651e-50!GO:0033279;ribosomal subunit;2.79570221949385e-49!GO:0031981;nuclear lumen;1.69366379250713e-46!GO:0016043;cellular component organization and biogenesis;2.4354422491388e-44!GO:0044260;cellular macromolecule metabolic process;3.71153807896243e-44!GO:0044267;cellular protein metabolic process;3.30321063280989e-43!GO:0005829;cytosol;5.7711296188276e-43!GO:0016071;mRNA metabolic process;5.03616198800689e-42!GO:0005740;mitochondrial envelope;2.41815261017615e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.97322646708227e-39!GO:0015031;protein transport;9.97322646708227e-39!GO:0033036;macromolecule localization;1.12608619166456e-38!GO:0043228;non-membrane-bound organelle;3.04283720295009e-38!GO:0043232;intracellular non-membrane-bound organelle;3.04283720295009e-38!GO:0008380;RNA splicing;7.20822978665674e-38!GO:0006397;mRNA processing;3.70580202598021e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.70580202598021e-37!GO:0065003;macromolecular complex assembly;6.00160450554089e-37!GO:0031966;mitochondrial membrane;1.25001172793607e-36!GO:0045184;establishment of protein localization;4.11403683971807e-36!GO:0043283;biopolymer metabolic process;5.57208626966363e-36!GO:0008104;protein localization;1.25322676160222e-35!GO:0019866;organelle inner membrane;1.60909968750376e-35!GO:0006259;DNA metabolic process;3.21564773355911e-35!GO:0010467;gene expression;6.58913192848786e-35!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.69224702807927e-34!GO:0005743;mitochondrial inner membrane;2.12807731978982e-33!GO:0022607;cellular component assembly;8.44169759718232e-33!GO:0006996;organelle organization and biogenesis;5.26296646040758e-32!GO:0046907;intracellular transport;1.55333304685113e-31!GO:0031980;mitochondrial lumen;1.35408047200931e-29!GO:0005759;mitochondrial matrix;1.35408047200931e-29!GO:0005681;spliceosome;8.63403367280207e-29!GO:0007049;cell cycle;2.35727750247266e-28!GO:0005654;nucleoplasm;5.12542357866656e-27!GO:0006886;intracellular protein transport;5.1557212350316e-27!GO:0044445;cytosolic part;1.18517351542803e-26!GO:0015934;large ribosomal subunit;2.74449703842726e-25!GO:0006119;oxidative phosphorylation;3.098354268615e-25!GO:0015935;small ribosomal subunit;4.25530147035872e-25!GO:0044455;mitochondrial membrane part;8.41304207257995e-25!GO:0000278;mitotic cell cycle;3.12200914864757e-24!GO:0006457;protein folding;4.33387970759731e-23!GO:0016462;pyrophosphatase activity;5.49103958108526e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.25817170112335e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.10577448771669e-22!GO:0017111;nucleoside-triphosphatase activity;4.39723633968713e-22!GO:0006974;response to DNA damage stimulus;9.37220580265407e-22!GO:0022402;cell cycle process;1.33290308989632e-21!GO:0000166;nucleotide binding;1.82252001201484e-21!GO:0044451;nucleoplasm part;2.34704758413874e-21!GO:0012505;endomembrane system;2.37694598644085e-21!GO:0051186;cofactor metabolic process;5.47926990207704e-21!GO:0005746;mitochondrial respiratory chain;5.51854091923335e-21!GO:0005783;endoplasmic reticulum;1.09647815022837e-20!GO:0005730;nucleolus;1.10113543583964e-20!GO:0051649;establishment of cellular localization;1.46749235064063e-20!GO:0051641;cellular localization;2.16216250614966e-20!GO:0022618;protein-RNA complex assembly;9.56611763659944e-20!GO:0005761;mitochondrial ribosome;1.08753906484376e-19!GO:0000313;organellar ribosome;1.08753906484376e-19!GO:0042254;ribosome biogenesis and assembly;1.17303910395182e-19!GO:0005694;chromosome;2.4108319464514e-19!GO:0044432;endoplasmic reticulum part;4.78565295445232e-19!GO:0022403;cell cycle phase;4.98794665270661e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.15346181775013e-19!GO:0006281;DNA repair;1.9660331151546e-18!GO:0048770;pigment granule;2.26264283860496e-18!GO:0042470;melanosome;2.26264283860496e-18!GO:0000087;M phase of mitotic cell cycle;2.60535457155767e-18!GO:0044427;chromosomal part;3.5497107246884e-18!GO:0007067;mitosis;4.86510205022169e-18!GO:0003676;nucleic acid binding;8.09516485454375e-18!GO:0050136;NADH dehydrogenase (quinone) activity;1.11554071352471e-17!GO:0003954;NADH dehydrogenase activity;1.11554071352471e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.11554071352471e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.30353951058184e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.57124119461089e-17!GO:0008135;translation factor activity, nucleic acid binding;3.28208290268807e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.34871877920021e-17!GO:0006732;coenzyme metabolic process;1.82535434297451e-16!GO:0044248;cellular catabolic process;1.93041723081492e-16!GO:0044265;cellular macromolecule catabolic process;2.22953121428624e-16!GO:0051082;unfolded protein binding;2.97013612779202e-16!GO:0006260;DNA replication;3.01093376358261e-16!GO:0051301;cell division;5.21748456494871e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.0248430056426e-16!GO:0042775;organelle ATP synthesis coupled electron transport;9.26055187297323e-16!GO:0042773;ATP synthesis coupled electron transport;9.26055187297323e-16!GO:0009719;response to endogenous stimulus;9.43405239399132e-16!GO:0030964;NADH dehydrogenase complex (quinone);1.02300752949802e-15!GO:0045271;respiratory chain complex I;1.02300752949802e-15!GO:0005747;mitochondrial respiratory chain complex I;1.02300752949802e-15!GO:0016874;ligase activity;1.11710177668392e-15!GO:0009057;macromolecule catabolic process;2.2595178864686e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.45075580966568e-15!GO:0043285;biopolymer catabolic process;4.10002564669911e-15!GO:0000279;M phase;5.40539115555097e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.39573208682067e-15!GO:0000375;RNA splicing, via transesterification reactions;7.39573208682067e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.39573208682067e-15!GO:0017076;purine nucleotide binding;1.33434161652338e-14!GO:0032553;ribonucleotide binding;2.68639402214021e-14!GO:0032555;purine ribonucleotide binding;2.68639402214021e-14!GO:0009055;electron carrier activity;3.36060651830619e-14!GO:0006605;protein targeting;4.0412052501858e-14!GO:0006364;rRNA processing;4.25621444683745e-14!GO:0006399;tRNA metabolic process;4.25621444683745e-14!GO:0016072;rRNA metabolic process;1.0605764220255e-13!GO:0003743;translation initiation factor activity;2.00684630397171e-13!GO:0005794;Golgi apparatus;2.58279593298664e-13!GO:0051276;chromosome organization and biogenesis;2.69804660454861e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.7988606705079e-13!GO:0016887;ATPase activity;3.43590668207569e-13!GO:0042623;ATPase activity, coupled;4.73703471734401e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;6.60013492993805e-13!GO:0006413;translational initiation;6.87906559557556e-13!GO:0005789;endoplasmic reticulum membrane;8.81910802481538e-13!GO:0006512;ubiquitin cycle;9.43277339085952e-13!GO:0019941;modification-dependent protein catabolic process;9.80167178195516e-13!GO:0043632;modification-dependent macromolecule catabolic process;9.80167178195516e-13!GO:0065004;protein-DNA complex assembly;9.96516115740197e-13!GO:0044257;cellular protein catabolic process;1.18088337037639e-12!GO:0016491;oxidoreductase activity;1.20470516590045e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.4832189653013e-12!GO:0005635;nuclear envelope;1.78806277481798e-12!GO:0009259;ribonucleotide metabolic process;2.25632880349872e-12!GO:0044453;nuclear membrane part;2.5245261346613e-12!GO:0031965;nuclear membrane;2.55707641041472e-12!GO:0005524;ATP binding;3.39030665024969e-12!GO:0016070;RNA metabolic process;6.55276367084199e-12!GO:0006163;purine nucleotide metabolic process;6.87325995427414e-12!GO:0030554;adenyl nucleotide binding;7.15768820432735e-12!GO:0032559;adenyl ribonucleotide binding;1.00948626067387e-11!GO:0030163;protein catabolic process;1.12934161174773e-11!GO:0051188;cofactor biosynthetic process;1.29064282558498e-11!GO:0008134;transcription factor binding;1.36623375751985e-11!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.15809593674738e-11!GO:0005793;ER-Golgi intermediate compartment;2.1733912053721e-11!GO:0009260;ribonucleotide biosynthetic process;3.13495675622492e-11!GO:0006164;purine nucleotide biosynthetic process;3.64255433145488e-11!GO:0009150;purine ribonucleotide metabolic process;4.38411062578674e-11!GO:0048193;Golgi vesicle transport;5.27134403046258e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.15440794273466e-10!GO:0000785;chromatin;1.17114571774554e-10!GO:0006333;chromatin assembly or disassembly;1.19232178291759e-10!GO:0016604;nuclear body;1.40975245663971e-10!GO:0006446;regulation of translational initiation;2.09287074218219e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.28500253843734e-10!GO:0000074;regulation of progression through cell cycle;2.95384892672863e-10!GO:0006334;nucleosome assembly;2.9552728197594e-10!GO:0006323;DNA packaging;3.39069882622221e-10!GO:0051726;regulation of cell cycle;3.44121645342087e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.48091796638931e-10!GO:0065002;intracellular protein transport across a membrane;3.53114428876125e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.93951948821409e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.93951948821409e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.93951948821409e-10!GO:0030532;small nuclear ribonucleoprotein complex;5.18109099674255e-10!GO:0005643;nuclear pore;6.56850627298191e-10!GO:0009199;ribonucleoside triphosphate metabolic process;8.40654403783371e-10!GO:0009117;nucleotide metabolic process;8.4094804958459e-10!GO:0043038;amino acid activation;8.73114005976384e-10!GO:0006418;tRNA aminoacylation for protein translation;8.73114005976384e-10!GO:0043039;tRNA aminoacylation;8.73114005976384e-10!GO:0009141;nucleoside triphosphate metabolic process;9.50309146831833e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.11633390871356e-09!GO:0012501;programmed cell death;1.27257370127501e-09!GO:0009056;catabolic process;1.65240206487863e-09!GO:0006461;protein complex assembly;1.65845017701996e-09!GO:0031497;chromatin assembly;1.66679409061214e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.77080562605222e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.77080562605222e-09!GO:0005788;endoplasmic reticulum lumen;2.19707444137129e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.2223219888171e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.2223219888171e-09!GO:0009060;aerobic respiration;2.42735768739576e-09!GO:0006913;nucleocytoplasmic transport;2.4889536675568e-09!GO:0009108;coenzyme biosynthetic process;2.55725912403066e-09!GO:0008565;protein transporter activity;3.24420889320809e-09!GO:0006915;apoptosis;3.26169484195451e-09!GO:0003697;single-stranded DNA binding;3.96593607943347e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.87269176420109e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.87269176420109e-09!GO:0045333;cellular respiration;5.43223422386028e-09!GO:0051169;nuclear transport;5.74083571122724e-09!GO:0004386;helicase activity;6.63009510003761e-09!GO:0006091;generation of precursor metabolites and energy;7.00233892687762e-09!GO:0015986;ATP synthesis coupled proton transport;7.74168485892542e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.74168485892542e-09!GO:0016853;isomerase activity;7.87499232037191e-09!GO:0007005;mitochondrion organization and biogenesis;9.7118999141084e-09!GO:0008026;ATP-dependent helicase activity;9.98072612202316e-09!GO:0046930;pore complex;1.76621509702779e-08!GO:0016192;vesicle-mediated transport;2.42052479033066e-08!GO:0019829;cation-transporting ATPase activity;2.42845510851524e-08!GO:0008219;cell death;2.80053045911601e-08!GO:0016265;death;2.80053045911601e-08!GO:0017038;protein import;2.92502609078264e-08!GO:0043566;structure-specific DNA binding;3.15774273372957e-08!GO:0016779;nucleotidyltransferase activity;3.67753073691628e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.83153905220872e-08!GO:0050657;nucleic acid transport;3.90198114631018e-08!GO:0051236;establishment of RNA localization;3.90198114631018e-08!GO:0050658;RNA transport;3.90198114631018e-08!GO:0016787;hydrolase activity;4.00645356483523e-08!GO:0016607;nuclear speck;4.30791111865538e-08!GO:0046034;ATP metabolic process;4.55794917640907e-08!GO:0006403;RNA localization;4.93009675469316e-08!GO:0043412;biopolymer modification;6.00320130567898e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.46071098712932e-08!GO:0015630;microtubule cytoskeleton;9.52436110651182e-08!GO:0006261;DNA-dependent DNA replication;9.72943686967964e-08!GO:0016740;transferase activity;1.00319378717765e-07!GO:0051329;interphase of mitotic cell cycle;1.08720259257343e-07!GO:0006754;ATP biosynthetic process;1.11542333657291e-07!GO:0006753;nucleoside phosphate metabolic process;1.11542333657291e-07!GO:0006099;tricarboxylic acid cycle;1.31756942229102e-07!GO:0046356;acetyl-CoA catabolic process;1.31756942229102e-07!GO:0003712;transcription cofactor activity;1.48960877149696e-07!GO:0006084;acetyl-CoA metabolic process;2.15017178292346e-07!GO:0005819;spindle;2.28264672491704e-07!GO:0005762;mitochondrial large ribosomal subunit;2.89667169314772e-07!GO:0000315;organellar large ribosomal subunit;2.89667169314772e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.185890559154e-07!GO:0051325;interphase;3.53945935172237e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.92716308741939e-07!GO:0051187;cofactor catabolic process;3.97368302206636e-07!GO:0006752;group transfer coenzyme metabolic process;4.25927115761664e-07!GO:0045259;proton-transporting ATP synthase complex;4.68643007060723e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.66086848135933e-07!GO:0009109;coenzyme catabolic process;7.00107689274573e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.10505381843902e-07!GO:0045454;cell redox homeostasis;8.01277045302527e-07!GO:0003924;GTPase activity;8.08538734185702e-07!GO:0003899;DNA-directed RNA polymerase activity;1.0490123452722e-06!GO:0000775;chromosome, pericentric region;1.11960225062058e-06!GO:0016859;cis-trans isomerase activity;1.19304943489175e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.23270334149526e-06!GO:0006464;protein modification process;1.35607593562013e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.37309265419116e-06!GO:0051028;mRNA transport;1.5484490817464e-06!GO:0030120;vesicle coat;1.6274562417697e-06!GO:0030662;coated vesicle membrane;1.6274562417697e-06!GO:0048475;coated membrane;1.65267486253067e-06!GO:0030117;membrane coat;1.65267486253067e-06!GO:0000245;spliceosome assembly;2.03801189038779e-06!GO:0005813;centrosome;2.34203916889037e-06!GO:0051246;regulation of protein metabolic process;2.42201694594237e-06!GO:0000314;organellar small ribosomal subunit;2.49189237921263e-06!GO:0005763;mitochondrial small ribosomal subunit;2.49189237921263e-06!GO:0048523;negative regulation of cellular process;2.50450651696701e-06!GO:0043069;negative regulation of programmed cell death;2.53946708020382e-06!GO:0008639;small protein conjugating enzyme activity;2.54784377367609e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.64767570547102e-06!GO:0043623;cellular protein complex assembly;2.77244915766058e-06!GO:0043067;regulation of programmed cell death;2.93599591233017e-06!GO:0004298;threonine endopeptidase activity;3.02772208274189e-06!GO:0005667;transcription factor complex;3.07463853626667e-06!GO:0042981;regulation of apoptosis;3.62852901199995e-06!GO:0044431;Golgi apparatus part;4.36176431454225e-06!GO:0009165;nucleotide biosynthetic process;4.57857213820411e-06!GO:0005815;microtubule organizing center;4.71867916698746e-06!GO:0043066;negative regulation of apoptosis;5.04969065879295e-06!GO:0004842;ubiquitin-protein ligase activity;5.54863369327569e-06!GO:0000786;nucleosome;5.56492358581085e-06!GO:0008654;phospholipid biosynthetic process;5.83829818085543e-06!GO:0006366;transcription from RNA polymerase II promoter;6.20847329561326e-06!GO:0019787;small conjugating protein ligase activity;6.34396689741196e-06!GO:0015980;energy derivation by oxidation of organic compounds;7.12946043878299e-06!GO:0006950;response to stress;8.77513481609702e-06!GO:0008094;DNA-dependent ATPase activity;8.96525883216963e-06!GO:0000075;cell cycle checkpoint;8.97186891097372e-06!GO:0007051;spindle organization and biogenesis;9.02813653987915e-06!GO:0006916;anti-apoptosis;9.2143594189808e-06!GO:0006613;cotranslational protein targeting to membrane;1.08838211045781e-05!GO:0005657;replication fork;1.09954604897179e-05!GO:0008033;tRNA processing;1.10342237980483e-05!GO:0003724;RNA helicase activity;1.30890116116343e-05!GO:0019843;rRNA binding;1.37064016529398e-05!GO:0006082;organic acid metabolic process;1.66625324171377e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.8052513548077e-05!GO:0019752;carboxylic acid metabolic process;1.9513843908649e-05!GO:0031968;organelle outer membrane;2.12367458718083e-05!GO:0044262;cellular carbohydrate metabolic process;2.20659624529053e-05!GO:0019867;outer membrane;2.28970578265464e-05!GO:0016881;acid-amino acid ligase activity;2.89359486687574e-05!GO:0048519;negative regulation of biological process;3.21773454480501e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.35808144308883e-05!GO:0003684;damaged DNA binding;3.73094300976792e-05!GO:0008168;methyltransferase activity;4.23691225795497e-05!GO:0005525;GTP binding;4.34689155392591e-05!GO:0016741;transferase activity, transferring one-carbon groups;4.6842382868507e-05!GO:0043021;ribonucleoprotein binding;4.84588522405528e-05!GO:0051170;nuclear import;5.12428956058944e-05!GO:0030867;rough endoplasmic reticulum membrane;5.2660467780841e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.86303154200883e-05!GO:0016568;chromatin modification;6.4362857257318e-05!GO:0044452;nucleolar part;6.4362857257318e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.5578333851884e-05!GO:0043681;protein import into mitochondrion;6.7795321483252e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;7.17721699168265e-05!GO:0005741;mitochondrial outer membrane;7.7928021906225e-05!GO:0016023;cytoplasmic membrane-bound vesicle;8.25900811287096e-05!GO:0051789;response to protein stimulus;9.709999393356e-05!GO:0006986;response to unfolded protein;9.709999393356e-05!GO:0006626;protein targeting to mitochondrion;9.94658784337428e-05!GO:0031988;membrane-bound vesicle;9.99648655067187e-05!GO:0043687;post-translational protein modification;0.000101227298416082!GO:0000139;Golgi membrane;0.000103814197156305!GO:0033116;ER-Golgi intermediate compartment membrane;0.000107619333555115!GO:0000151;ubiquitin ligase complex;0.000109216339009254!GO:0005770;late endosome;0.000122120578131995!GO:0006606;protein import into nucleus;0.000137499126940226!GO:0005768;endosome;0.000137620875546519!GO:0032446;protein modification by small protein conjugation;0.000148580911271827!GO:0006383;transcription from RNA polymerase III promoter;0.000155956047755009!GO:0046483;heterocycle metabolic process;0.000158675084893094!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000161376389766942!GO:0050662;coenzyme binding;0.000203388070459941!GO:0006612;protein targeting to membrane;0.000203399304092566!GO:0016567;protein ubiquitination;0.00020846285961869!GO:0005798;Golgi-associated vesicle;0.000214657403811255!GO:0006520;amino acid metabolic process;0.000232860504097036!GO:0006414;translational elongation;0.000240038157958101!GO:0006118;electron transport;0.000273861668721373!GO:0000082;G1/S transition of mitotic cell cycle;0.000284000688878837!GO:0006302;double-strand break repair;0.000285374122086973!GO:0006839;mitochondrial transport;0.000299829050275423!GO:0031072;heat shock protein binding;0.000302856594352884!GO:0005048;signal sequence binding;0.000314579871310555!GO:0030880;RNA polymerase complex;0.000321492188611147!GO:0007088;regulation of mitosis;0.000334483725679642!GO:0004576;oligosaccharyl transferase activity;0.000354425227827428!GO:0008250;oligosaccharyl transferase complex;0.000373967389488992!GO:0031324;negative regulation of cellular metabolic process;0.000373967389488992!GO:0016563;transcription activator activity;0.000394029691791386!GO:0030176;integral to endoplasmic reticulum membrane;0.00042223821927381!GO:0005885;Arp2/3 protein complex;0.00043459575277847!GO:0008186;RNA-dependent ATPase activity;0.00043587894527811!GO:0046474;glycerophospholipid biosynthetic process;0.00044342978390689!GO:0032561;guanyl ribonucleotide binding;0.000446311473494467!GO:0019001;guanyl nucleotide binding;0.000446311473494467!GO:0051427;hormone receptor binding;0.000446741392290044!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000458382248684628!GO:0003729;mRNA binding;0.000458382248684628!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000469530602942278!GO:0008361;regulation of cell size;0.000469530602942278!GO:0003713;transcription coactivator activity;0.00047513040751621!GO:0004518;nuclease activity;0.000477822225451336!GO:0016049;cell growth;0.0005263570688609!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000532353546374177!GO:0001558;regulation of cell growth;0.000544664125991173!GO:0000776;kinetochore;0.000550076004113083!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000562190131147423!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000602616414662102!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000606118060512379!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000607356303031436!GO:0007006;mitochondrial membrane organization and biogenesis;0.00060894758064383!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00060894758064383!GO:0015399;primary active transmembrane transporter activity;0.00060894758064383!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000624831329241698!GO:0043284;biopolymer biosynthetic process;0.000645326275721801!GO:0003714;transcription corepressor activity;0.000680041418612567!GO:0016363;nuclear matrix;0.000702531199823526!GO:0046489;phosphoinositide biosynthetic process;0.000707700188260362!GO:0051920;peroxiredoxin activity;0.000757774197844273!GO:0005773;vacuole;0.000760645203407843!GO:0031252;leading edge;0.000771536868721839!GO:0005684;U2-dependent spliceosome;0.000798726648362946!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000816541900065577!GO:0000428;DNA-directed RNA polymerase complex;0.000816541900065577!GO:0042802;identical protein binding;0.000819966143380621!GO:0051052;regulation of DNA metabolic process;0.000823218315548181!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00087499337910447!GO:0015002;heme-copper terminal oxidase activity;0.00087499337910447!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00087499337910447!GO:0004129;cytochrome-c oxidase activity;0.00087499337910447!GO:0035257;nuclear hormone receptor binding;0.000889150816797314!GO:0004527;exonuclease activity;0.000900166386207789!GO:0044440;endosomal part;0.000902543868080526!GO:0010008;endosome membrane;0.000902543868080526!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000917899945804553!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000917899945804553!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000917899945804553!GO:0051539;4 iron, 4 sulfur cluster binding;0.000928113969586408!GO:0045786;negative regulation of progression through cell cycle;0.000936762059097619!GO:0018196;peptidyl-asparagine modification;0.000936762059097619!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000936762059097619!GO:0031982;vesicle;0.00095416719365625!GO:0051252;regulation of RNA metabolic process;0.000964247258587533!GO:0008610;lipid biosynthetic process;0.00099135950942087!GO:0003690;double-stranded DNA binding;0.00099135950942087!GO:0031410;cytoplasmic vesicle;0.00104778670832167!GO:0004004;ATP-dependent RNA helicase activity;0.00109035983102292!GO:0015992;proton transport;0.00112393417280799!GO:0030133;transport vesicle;0.00113784131608087!GO:0000178;exosome (RNase complex);0.00114512861861699!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00115877041131712!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00115877041131712!GO:0030663;COPI coated vesicle membrane;0.00116556937936848!GO:0030126;COPI vesicle coat;0.00116556937936848!GO:0051168;nuclear export;0.00124656581470344!GO:0043488;regulation of mRNA stability;0.00131817349583471!GO:0043487;regulation of RNA stability;0.00131817349583471!GO:0032508;DNA duplex unwinding;0.00136441829383578!GO:0032392;DNA geometric change;0.00136441829383578!GO:0009112;nucleobase metabolic process;0.0013748862765033!GO:0009116;nucleoside metabolic process;0.00137979498089116!GO:0000059;protein import into nucleus, docking;0.00138198344510866!GO:0007093;mitotic cell cycle checkpoint;0.00140675816365513!GO:0006818;hydrogen transport;0.00148760470226421!GO:0048037;cofactor binding;0.00152513196405765!GO:0006352;transcription initiation;0.00152524882456611!GO:0051287;NAD binding;0.00153191950355697!GO:0006401;RNA catabolic process;0.00155666898410785!GO:0008180;signalosome;0.00163756690363268!GO:0006807;nitrogen compound metabolic process;0.00163756690363268!GO:0030137;COPI-coated vesicle;0.00166756862667122!GO:0046467;membrane lipid biosynthetic process;0.00169514335214525!GO:0006402;mRNA catabolic process;0.00175041656142388!GO:0006310;DNA recombination;0.00178136279523843!GO:0015631;tubulin binding;0.00183807990948012!GO:0006284;base-excision repair;0.00202220612392656!GO:0006595;polyamine metabolic process;0.00206453865286985!GO:0006007;glucose catabolic process;0.00222138906636687!GO:0048500;signal recognition particle;0.00223479321608107!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00223952762262835!GO:0008632;apoptotic program;0.00236908066030732!GO:0006268;DNA unwinding during replication;0.00239304365405537!GO:0005758;mitochondrial intermembrane space;0.00240671297243724!GO:0005791;rough endoplasmic reticulum;0.00243666202205754!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00263607487613864!GO:0000323;lytic vacuole;0.00264597417375875!GO:0005764;lysosome;0.00264597417375875!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00270823417687881!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00276020522983327!GO:0016564;transcription repressor activity;0.00276020522983327!GO:0051540;metal cluster binding;0.00276020522983327!GO:0051536;iron-sulfur cluster binding;0.00276020522983327!GO:0051087;chaperone binding;0.00283977315917574!GO:0009892;negative regulation of metabolic process;0.00291625430815672!GO:0009451;RNA modification;0.00295329081647329!GO:0007050;cell cycle arrest;0.00297547586807!GO:0016272;prefoldin complex;0.00300307168126385!GO:0022890;inorganic cation transmembrane transporter activity;0.00302965143859208!GO:0008312;7S RNA binding;0.00304418793072052!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00312945841597872!GO:0006740;NADPH regeneration;0.00314298518477748!GO:0006098;pentose-phosphate shunt;0.00314298518477748!GO:0006289;nucleotide-excision repair;0.00322652320313883!GO:0006506;GPI anchor biosynthetic process;0.00330533990464718!GO:0003678;DNA helicase activity;0.00344061640218743!GO:0000049;tRNA binding;0.00351978517894036!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00362275582338839!GO:0016126;sterol biosynthetic process;0.00367681897693486!GO:0003711;transcription elongation regulator activity;0.00370777537792079!GO:0009308;amine metabolic process;0.00374857295945967!GO:0006220;pyrimidine nucleotide metabolic process;0.00374857295945967!GO:0003682;chromatin binding;0.00385651203403102!GO:0004532;exoribonuclease activity;0.00406384487052715!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00406384487052715!GO:0006733;oxidoreduction coenzyme metabolic process;0.00417836296153289!GO:0031970;organelle envelope lumen;0.00417836296153289!GO:0006519;amino acid and derivative metabolic process;0.004358597743109!GO:0006778;porphyrin metabolic process;0.00436693869004952!GO:0033013;tetrapyrrole metabolic process;0.00436693869004952!GO:0006275;regulation of DNA replication;0.00440489657154699!GO:0006505;GPI anchor metabolic process;0.00452170456902916!GO:0006793;phosphorus metabolic process;0.00459606219543743!GO:0006796;phosphate metabolic process;0.00459606219543743!GO:0007059;chromosome segregation;0.00465555766150133!GO:0005637;nuclear inner membrane;0.00468438711002282!GO:0005876;spindle microtubule;0.00469195670190222!GO:0043492;ATPase activity, coupled to movement of substances;0.00474690159992725!GO:0006497;protein amino acid lipidation;0.00500469884933601!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00500634574939903!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00524419339369484!GO:0005905;coated pit;0.0053042506074092!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00539551386210416!GO:0045047;protein targeting to ER;0.00539551386210416!GO:0031124;mRNA 3'-end processing;0.00552964352976695!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00557710589852402!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00583166819953417!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00590323703445875!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00590323703445875!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00593193078041124!GO:0006979;response to oxidative stress;0.00595482702817614!GO:0048487;beta-tubulin binding;0.0066426647299383!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00668218439425776!GO:0007052;mitotic spindle organization and biogenesis;0.00677160492991669!GO:0008139;nuclear localization sequence binding;0.00677160492991669!GO:0005869;dynactin complex;0.00685789767062557!GO:0009303;rRNA transcription;0.00695607484557383!GO:0005874;microtubule;0.00731361486427473!GO:0003746;translation elongation factor activity;0.00786530848176975!GO:0043022;ribosome binding;0.00797251265079811!GO:0016310;phosphorylation;0.00800902329380361!GO:0006144;purine base metabolic process;0.00830522962397212!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00838058442032274!GO:0030658;transport vesicle membrane;0.00857611606865774!GO:0008408;3'-5' exonuclease activity;0.00877179221765516!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00889561854310465!GO:0019899;enzyme binding;0.00902982325595164!GO:0005769;early endosome;0.00923147524547534!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00925272040943437!GO:0015036;disulfide oxidoreductase activity;0.00927734186030298!GO:0043596;nuclear replication fork;0.00928828880324221!GO:0007346;regulation of progression through mitotic cell cycle;0.00930349629266111!GO:0030132;clathrin coat of coated pit;0.00932677416041847!GO:0009124;nucleoside monophosphate biosynthetic process;0.00938399669708511!GO:0009123;nucleoside monophosphate metabolic process;0.00938399669708511!GO:0032984;macromolecular complex disassembly;0.00942600900286159!GO:0048471;perinuclear region of cytoplasm;0.0094342656210281!GO:0005832;chaperonin-containing T-complex;0.0094342656210281!GO:0000096;sulfur amino acid metabolic process;0.00953351435361642!GO:0006779;porphyrin biosynthetic process;0.00960957373081226!GO:0033014;tetrapyrrole biosynthetic process;0.00960957373081226!GO:0003756;protein disulfide isomerase activity;0.00974920476048793!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00974920476048793!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00985692224346181!GO:0030118;clathrin coat;0.0103512891954642!GO:0006509;membrane protein ectodomain proteolysis;0.0103889855447185!GO:0033619;membrane protein proteolysis;0.0103889855447185!GO:0030134;ER to Golgi transport vesicle;0.0108446322108077!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0109758783962229!GO:0005996;monosaccharide metabolic process;0.0113666556787364!GO:0019318;hexose metabolic process;0.0114671327044078!GO:0007040;lysosome organization and biogenesis;0.011476495428742!GO:0006405;RNA export from nucleus;0.011558650635798!GO:0006378;mRNA polyadenylation;0.0116082432798937!GO:0042158;lipoprotein biosynthetic process;0.0116082432798937!GO:0000339;RNA cap binding;0.0118507461285717!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0119461112355033!GO:0031418;L-ascorbic acid binding;0.0121761362377221!GO:0000175;3'-5'-exoribonuclease activity;0.0126486881355624!GO:0043241;protein complex disassembly;0.0129530452703643!GO:0016481;negative regulation of transcription;0.0131849658156803!GO:0042168;heme metabolic process;0.0131933518011663!GO:0040008;regulation of growth;0.0132546498201031!GO:0006695;cholesterol biosynthetic process;0.013309743667422!GO:0043624;cellular protein complex disassembly;0.0133513107133355!GO:0006891;intra-Golgi vesicle-mediated transport;0.0135278115453571!GO:0031570;DNA integrity checkpoint;0.0137541517238727!GO:0017166;vinculin binding;0.013938748515155!GO:0050794;regulation of cellular process;0.0141406284218129!GO:0008652;amino acid biosynthetic process;0.0142311671765459!GO:0016407;acetyltransferase activity;0.0150280430381637!GO:0030659;cytoplasmic vesicle membrane;0.0150876874255315!GO:0035258;steroid hormone receptor binding;0.0154223902426316!GO:0007021;tubulin folding;0.0154223902426316!GO:0005862;muscle thin filament tropomyosin;0.0155620603682566!GO:0006739;NADP metabolic process;0.0159100439876255!GO:0022411;cellular component disassembly;0.0164358427144946!GO:0030119;AP-type membrane coat adaptor complex;0.0165576836153577!GO:0000910;cytokinesis;0.0166803563068313!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0166803563068313!GO:0031301;integral to organelle membrane;0.0168128144311615!GO:0030521;androgen receptor signaling pathway;0.017154636738672!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0173085084388345!GO:0030127;COPII vesicle coat;0.017441537159044!GO:0012507;ER to Golgi transport vesicle membrane;0.017441537159044!GO:0046365;monosaccharide catabolic process;0.017543363487465!GO:0048144;fibroblast proliferation;0.017766916182209!GO:0048145;regulation of fibroblast proliferation;0.017766916182209!GO:0019206;nucleoside kinase activity;0.0184760515083932!GO:0032259;methylation;0.018554388143102!GO:0030660;Golgi-associated vesicle membrane;0.0187928563914284!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0189066367592069!GO:0009161;ribonucleoside monophosphate metabolic process;0.0192071046319567!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0192071046319567!GO:0006270;DNA replication initiation;0.0194529044569501!GO:0004003;ATP-dependent DNA helicase activity;0.0197157320152152!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0201580802346945!GO:0031529;ruffle organization and biogenesis;0.0201869895220473!GO:0005975;carbohydrate metabolic process;0.0204102325142744!GO:0051101;regulation of DNA binding;0.0205808219514184!GO:0046128;purine ribonucleoside metabolic process;0.020766879331587!GO:0042278;purine nucleoside metabolic process;0.020766879331587!GO:0007017;microtubule-based process;0.020766879331587!GO:0000922;spindle pole;0.0210447452815659!GO:0040029;regulation of gene expression, epigenetic;0.0210727497225307!GO:0030145;manganese ion binding;0.0211858153269758!GO:0005669;transcription factor TFIID complex;0.0213227623825414!GO:0009081;branched chain family amino acid metabolic process;0.0217304876944782!GO:0000725;recombinational repair;0.0218085046013305!GO:0000724;double-strand break repair via homologous recombination;0.0218085046013305!GO:0007033;vacuole organization and biogenesis;0.0219819797219893!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0224966737744083!GO:0010257;NADH dehydrogenase complex assembly;0.0224966737744083!GO:0033108;mitochondrial respiratory chain complex assembly;0.0224966737744083!GO:0016860;intramolecular oxidoreductase activity;0.0227388158264767!GO:0009119;ribonucleoside metabolic process;0.0229630261812668!GO:0043601;nuclear replisome;0.0229746052153927!GO:0030894;replisome;0.0229746052153927!GO:0030027;lamellipodium;0.0236744035095389!GO:0006611;protein export from nucleus;0.0243267611971483!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0243896271961451!GO:0031902;late endosome membrane;0.0245031100652717!GO:0006730;one-carbon compound metabolic process;0.0245043798298581!GO:0048146;positive regulation of fibroblast proliferation;0.0245043798298581!GO:0042393;histone binding;0.0245043798298581!GO:0007010;cytoskeleton organization and biogenesis;0.0245043798298581!GO:0048522;positive regulation of cellular process;0.0247720487743234!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0252027269358659!GO:0045039;protein import into mitochondrial inner membrane;0.0252027269358659!GO:0042770;DNA damage response, signal transduction;0.0254037000053711!GO:0004364;glutathione transferase activity;0.0254598970528286!GO:0045792;negative regulation of cell size;0.025692864544344!GO:0003923;GPI-anchor transamidase activity;0.0263349738276882!GO:0016255;attachment of GPI anchor to protein;0.0263349738276882!GO:0042765;GPI-anchor transamidase complex;0.0263349738276882!GO:0004177;aminopeptidase activity;0.0263679779657106!GO:0006096;glycolysis;0.0265546795920521!GO:0031625;ubiquitin protein ligase binding;0.0265546795920521!GO:0030308;negative regulation of cell growth;0.0266347844373804!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0272773571280843!GO:0019320;hexose catabolic process;0.0279178632765938!GO:0030131;clathrin adaptor complex;0.0280161064666065!GO:0050178;phenylpyruvate tautomerase activity;0.0280804037202192!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0280804037202192!GO:0030508;thiol-disulfide exchange intermediate activity;0.0281114792402053!GO:0044438;microbody part;0.0282619913042285!GO:0044439;peroxisomal part;0.0282619913042285!GO:0006266;DNA ligation;0.0282619913042285!GO:0031123;RNA 3'-end processing;0.0290141829987107!GO:0046519;sphingoid metabolic process;0.0291859225616587!GO:0008538;proteasome activator activity;0.029227084192765!GO:0006783;heme biosynthetic process;0.0293648068269562!GO:0046164;alcohol catabolic process;0.0295505325626179!GO:0046870;cadmium ion binding;0.0297791369707795!GO:0030496;midbody;0.0297791369707795!GO:0031371;ubiquitin conjugating enzyme complex;0.0298166261145248!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0301887256562672!GO:0043414;biopolymer methylation;0.0303083028499906!GO:0046112;nucleobase biosynthetic process;0.0303101035358101!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0303101035358101!GO:0006376;mRNA splice site selection;0.0306388730810699!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0306388730810699!GO:0006767;water-soluble vitamin metabolic process;0.0306388730810699!GO:0044433;cytoplasmic vesicle part;0.0307415573640622!GO:0004526;ribonuclease P activity;0.0308355124607418!GO:0008243;plasminogen activator activity;0.0309987411025054!GO:0006354;RNA elongation;0.0310138263034236!GO:0035267;NuA4 histone acetyltransferase complex;0.0311028986386823!GO:0006066;alcohol metabolic process;0.0312377625116032!GO:0004448;isocitrate dehydrogenase activity;0.0319564534046619!GO:0050681;androgen receptor binding;0.0320658489210772!GO:0004549;tRNA-specific ribonuclease activity;0.0325289255396037!GO:0004540;ribonuclease activity;0.0327743750207858!GO:0000152;nuclear ubiquitin ligase complex;0.0328070237630992!GO:0006596;polyamine biosynthetic process;0.0328070237630992!GO:0000287;magnesium ion binding;0.0328070237630992!GO:0043189;H4/H2A histone acetyltransferase complex;0.0329649159499174!GO:0006417;regulation of translation;0.0329649159499174!GO:0033559;unsaturated fatty acid metabolic process;0.0333561193090604!GO:0006636;unsaturated fatty acid biosynthetic process;0.0333561193090604!GO:0030911;TPR domain binding;0.0344179646871697!GO:0005784;translocon complex;0.0346291020361065!GO:0005774;vacuolar membrane;0.0346465455592726!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0349311112705157!GO:0006541;glutamine metabolic process;0.035426524523456!GO:0030149;sphingolipid catabolic process;0.0360439132778176!GO:0051098;regulation of binding;0.0368119316368056!GO:0000077;DNA damage checkpoint;0.0371109544770634!GO:0016251;general RNA polymerase II transcription factor activity;0.0372946099967893!GO:0030384;phosphoinositide metabolic process;0.0378831456241018!GO:0008022;protein C-terminus binding;0.0380125035176639!GO:0016408;C-acyltransferase activity;0.0380125035176639!GO:0004523;ribonuclease H activity;0.0383393144368223!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0386150262054261!GO:0031903;microbody membrane;0.0391533372979151!GO:0005778;peroxisomal membrane;0.0391533372979151!GO:0009262;deoxyribonucleotide metabolic process;0.0393684189651423!GO:0006650;glycerophospholipid metabolic process;0.0393684189651423!GO:0005663;DNA replication factor C complex;0.0394277844547723!GO:0006672;ceramide metabolic process;0.0397067995719289!GO:0005586;collagen type III;0.0399097290738158!GO:0006790;sulfur metabolic process;0.0410690278594862!GO:0005680;anaphase-promoting complex;0.0429347954452285!GO:0007034;vacuolar transport;0.0430390337519431!GO:0006400;tRNA modification;0.0437700994906999!GO:0000228;nuclear chromosome;0.044748719342682!GO:0000209;protein polyubiquitination;0.0452144574872449!GO:0005732;small nucleolar ribonucleoprotein complex;0.0453424793045875!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0459027696818314!GO:0016584;nucleosome positioning;0.045950931464236!GO:0008637;apoptotic mitochondrial changes;0.0460444068092398!GO:0006769;nicotinamide metabolic process;0.0460693713918451!GO:0000726;non-recombinational repair;0.0461750590132052!GO:0044450;microtubule organizing center part;0.0463684522519444!GO:0005652;nuclear lamina;0.0466708803129463!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0472160781828774!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0472614192320264!GO:0006458;'de novo' protein folding;0.0473737263933486!GO:0051084;'de novo' posttranslational protein folding;0.0473737263933486!GO:0001726;ruffle;0.0479203619396376!GO:0006006;glucose metabolic process;0.0479854989074068!GO:0000084;S phase of mitotic cell cycle;0.0482430379055163!GO:0019798;procollagen-proline dioxygenase activity;0.0482430379055163!GO:0045936;negative regulation of phosphate metabolic process;0.0482947909408094!GO:0000781;chromosome, telomeric region;0.0489801883104441!GO:0009225;nucleotide-sugar metabolic process;0.0490801263409949!GO:0001872;zymosan binding;0.0498299405676227!GO:0001878;response to yeast;0.0498299405676227!GO:0030433;ER-associated protein catabolic process;0.0498299405676227!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0498299405676227 | |||
|sample_id=11214 | |sample_id=11214 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical cord | |sample_tissue=umbilical cord | ||
|top_motifs=PBX1:1.5055953535;NR1H4:1.40772840333;NR5A1,2:1.39354109734;HSF1,2:1.25034777797;HOX{A5,B5}:1.23388341316;EN1,2:1.18250601513;RXR{A,B,G}:1.1311998202;HES1:1.11003537043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10057870334;CDC5L:1.08187799555;IKZF1:1.06876290949;E2F1..5:0.916886105006;GTF2A1,2:0.883692510376;NR3C1:0.835763990034;STAT5{A,B}:0.775658234274;POU2F1..3:0.743818127495;TBP:0.740122720635;NFY{A,B,C}:0.677331929217;LHX3,4:0.666349246411;YY1:0.648203669415;MYB:0.633010940211;NKX3-1:0.614557942658;TFAP4:0.594103290856;HAND1,2:0.589199957971;UFEwm:0.584434028032;AIRE:0.577677060828;HOXA9_MEIS1:0.577192230081;TAL1_TCF{3,4,12}:0.574931987896;ESR1:0.573788443676;PAX8:0.568402333411;PPARG:0.564092966758;FOXL1:0.563074269324;LEF1_TCF7_TCF7L1,2:0.55353428422;GLI1..3:0.547980733415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.545426817227;GFI1:0.539265462856;NR6A1:0.532832447098;EBF1:0.530353047104;GFI1B:0.520046701876;ARID5B:0.50157550151;ZNF384:0.493873008006;ELK1,4_GABP{A,B1}:0.477516801649;NANOG{mouse}:0.473590675188;ZNF238:0.46453259889;SRF:0.458170923075;ONECUT1,2:0.411582966251;KLF4:0.391299414694;TFDP1:0.361102216778;PRRX1,2:0.35283106602;NKX2-2,8:0.349609117045;TP53:0.330084774571;SOX5:0.329694155484;ALX4:0.284570409886;PAX1,9:0.255175249439;TEAD1:0.25449477524;FOXD3:0.244408568988;ATF6:0.235135428031;AR:0.224380433816;PAX5:0.223676350554;HNF4A_NR2F1,2:0.206717827895;SOX17:0.204449912599;MAFB:0.200195283148;ZNF143:0.186476558029;NFE2L2:0.182223720467;CRX:0.17026441542;ESRRA:0.149638452441;GZF1:0.143685820145;TLX1..3_NFIC{dimer}:0.131959741289;HNF1A:0.126294240484;POU3F1..4:0.124942568809;MYBL2:0.121063287102;HOX{A4,D4}:0.109260861737;RXRA_VDR{dimer}:0.103362325349;NFATC1..3:0.0820180891193;NKX6-1,2:0.0670510444085;HLF:0.055045883544;TBX4,5:0.0213681683951;RFX1:0.00670476565108;NRF1:0.000968478144622;FOS_FOS{B,L1}_JUN{B,D}:-0.00132855224116;BACH2:-0.00176039889389;TOPORS:-0.0108711231868;SPZ1:-0.0143064459341;POU5F1:-0.0300465361626;XBP1:-0.0398462306086;EVI1:-0.0561171606592;CEBPA,B_DDIT3:-0.0606471367907;TFCP2:-0.0649235693468;RUNX1..3:-0.0701130476323;NFE2:-0.0713745818233;DBP:-0.0717010762502;ADNP_IRX_SIX_ZHX:-0.0725139381223;POU6F1:-0.09382928737;FOX{F1,F2,J1}:-0.143630692334;NFIX:-0.173478157325;MEF2{A,B,C,D}:-0.174189768818;NANOG:-0.191168505107;RORA:-0.195345464888;FOSL2:-0.197456023692;GATA6:-0.21051138963;ELF1,2,4:-0.221696765644;SMAD1..7,9:-0.224729682625;NFKB1_REL_RELA:-0.228105248391;REST:-0.239605668521;BPTF:-0.241678034596;PAX4:-0.248521590304;ZNF423:-0.267024238005;bHLH_family:-0.267918368656;LMO2:-0.30151772006;PRDM1:-0.324982914047;MTF1:-0.325674605217;CDX1,2,4:-0.335410127801;NKX2-1,4:-0.339948842266;ALX1:-0.342473689887;NKX3-2:-0.346063908248;XCPE1{core}:-0.346800032052;SOX{8,9,10}:-0.359272863169;OCT4_SOX2{dimer}:-0.363394704669;FOX{I1,J2}:-0.366998736848;JUN:-0.374094282758;STAT2,4,6:-0.374286388666;T:-0.380433187109;GTF2I:-0.385557201343;TEF:-0.399072699377;NFIL3:-0.401221981352;CUX2:-0.406500501376;AHR_ARNT_ARNT2:-0.409976874861;DMAP1_NCOR{1,2}_SMARC:-0.413515713129;PAX3,7:-0.430852993417;SPIB:-0.43481088406;ZIC1..3:-0.436376756417;ZNF148:-0.439501357474;FOXA2:-0.441656169106;VSX1,2:-0.447426961402;SNAI1..3:-0.457848239321;FOXM1:-0.461142652324;HIF1A:-0.461190612252;PAX6:-0.461521785104;POU1F1:-0.466334711984;ATF2:-0.466671529004;ZBTB6:-0.47678499994;NHLH1,2:-0.481675060541;NKX2-3_NKX2-5:-0.483576171033;PATZ1:-0.513814621341;FOXQ1:-0.51522171787;CREB1:-0.517092976428;RREB1:-0.529698993607;HOX{A6,A7,B6,B7}:-0.533549005984;FOXP3:-0.541887046707;HMGA1,2:-0.547986164353;SOX2:-0.560845459733;STAT1,3:-0.566085099629;ETS1,2:-0.582553666145;SPI1:-0.591424920113;GCM1,2:-0.614696771837;ZBTB16:-0.633057296125;GATA4:-0.643744384189;NFE2L1:-0.654983063298;FOXP1:-0.656173970267;HBP1_HMGB_SSRP1_UBTF:-0.657151933919;HIC1:-0.667532136115;ZEB1:-0.675785870803;FOX{D1,D2}:-0.701709382598;PITX1..3:-0.710700899757;TLX2:-0.711594774097;ATF5_CREB3:-0.718703469277;PAX2:-0.723227026306;MAZ:-0.724117124741;IRF7:-0.728396763962;BREu{core}:-0.733262433011;ATF4:-0.765810019223;HMX1:-0.808002650966;IRF1,2:-0.831652340107;RBPJ:-0.847231203619;MTE{core}:-0.848210219409;PDX1:-0.85564155401;RFX2..5_RFXANK_RFXAP:-0.859770534805;TFAP2B:-0.86409945899;SP1:-0.888480742269;ZFP161:-0.914598318406;MZF1:-0.925327868331;TFAP2{A,C}:-0.938410116911;MED-1{core}:-1.0098924392;MYFfamily:-1.01385735811;FOXN1:-1.06691075732;FOXO1,3,4:-1.10233723162;TGIF1:-1.13204844681;MYOD1:-1.14115364053;IKZF2:-1.14406672153;EP300:-1.1945690831;EGR1..3:-1.24874174434;SREBF1,2:-1.43944080192 | |top_motifs=PBX1:1.5055953535;NR1H4:1.40772840333;NR5A1,2:1.39354109734;HSF1,2:1.25034777797;HOX{A5,B5}:1.23388341316;EN1,2:1.18250601513;RXR{A,B,G}:1.1311998202;HES1:1.11003537043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10057870334;CDC5L:1.08187799555;IKZF1:1.06876290949;E2F1..5:0.916886105006;GTF2A1,2:0.883692510376;NR3C1:0.835763990034;STAT5{A,B}:0.775658234274;POU2F1..3:0.743818127495;TBP:0.740122720635;NFY{A,B,C}:0.677331929217;LHX3,4:0.666349246411;YY1:0.648203669415;MYB:0.633010940211;NKX3-1:0.614557942658;TFAP4:0.594103290856;HAND1,2:0.589199957971;UFEwm:0.584434028032;AIRE:0.577677060828;HOXA9_MEIS1:0.577192230081;TAL1_TCF{3,4,12}:0.574931987896;ESR1:0.573788443676;PAX8:0.568402333411;PPARG:0.564092966758;FOXL1:0.563074269324;LEF1_TCF7_TCF7L1,2:0.55353428422;GLI1..3:0.547980733415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.545426817227;GFI1:0.539265462856;NR6A1:0.532832447098;EBF1:0.530353047104;GFI1B:0.520046701876;ARID5B:0.50157550151;ZNF384:0.493873008006;ELK1,4_GABP{A,B1}:0.477516801649;NANOG{mouse}:0.473590675188;ZNF238:0.46453259889;SRF:0.458170923075;ONECUT1,2:0.411582966251;KLF4:0.391299414694;TFDP1:0.361102216778;PRRX1,2:0.35283106602;NKX2-2,8:0.349609117045;TP53:0.330084774571;SOX5:0.329694155484;ALX4:0.284570409886;PAX1,9:0.255175249439;TEAD1:0.25449477524;FOXD3:0.244408568988;ATF6:0.235135428031;AR:0.224380433816;PAX5:0.223676350554;HNF4A_NR2F1,2:0.206717827895;SOX17:0.204449912599;MAFB:0.200195283148;ZNF143:0.186476558029;NFE2L2:0.182223720467;CRX:0.17026441542;ESRRA:0.149638452441;GZF1:0.143685820145;TLX1..3_NFIC{dimer}:0.131959741289;HNF1A:0.126294240484;POU3F1..4:0.124942568809;MYBL2:0.121063287102;HOX{A4,D4}:0.109260861737;RXRA_VDR{dimer}:0.103362325349;NFATC1..3:0.0820180891193;NKX6-1,2:0.0670510444085;HLF:0.055045883544;TBX4,5:0.0213681683951;RFX1:0.00670476565108;NRF1:0.000968478144622;FOS_FOS{B,L1}_JUN{B,D}:-0.00132855224116;BACH2:-0.00176039889389;TOPORS:-0.0108711231868;SPZ1:-0.0143064459341;POU5F1:-0.0300465361626;XBP1:-0.0398462306086;EVI1:-0.0561171606592;CEBPA,B_DDIT3:-0.0606471367907;TFCP2:-0.0649235693468;RUNX1..3:-0.0701130476323;NFE2:-0.0713745818233;DBP:-0.0717010762502;ADNP_IRX_SIX_ZHX:-0.0725139381223;POU6F1:-0.09382928737;FOX{F1,F2,J1}:-0.143630692334;NFIX:-0.173478157325;MEF2{A,B,C,D}:-0.174189768818;NANOG:-0.191168505107;RORA:-0.195345464888;FOSL2:-0.197456023692;GATA6:-0.21051138963;ELF1,2,4:-0.221696765644;SMAD1..7,9:-0.224729682625;NFKB1_REL_RELA:-0.228105248391;REST:-0.239605668521;BPTF:-0.241678034596;PAX4:-0.248521590304;ZNF423:-0.267024238005;bHLH_family:-0.267918368656;LMO2:-0.30151772006;PRDM1:-0.324982914047;MTF1:-0.325674605217;CDX1,2,4:-0.335410127801;NKX2-1,4:-0.339948842266;ALX1:-0.342473689887;NKX3-2:-0.346063908248;XCPE1{core}:-0.346800032052;SOX{8,9,10}:-0.359272863169;OCT4_SOX2{dimer}:-0.363394704669;FOX{I1,J2}:-0.366998736848;JUN:-0.374094282758;STAT2,4,6:-0.374286388666;T:-0.380433187109;GTF2I:-0.385557201343;TEF:-0.399072699377;NFIL3:-0.401221981352;CUX2:-0.406500501376;AHR_ARNT_ARNT2:-0.409976874861;DMAP1_NCOR{1,2}_SMARC:-0.413515713129;PAX3,7:-0.430852993417;SPIB:-0.43481088406;ZIC1..3:-0.436376756417;ZNF148:-0.439501357474;FOXA2:-0.441656169106;VSX1,2:-0.447426961402;SNAI1..3:-0.457848239321;FOXM1:-0.461142652324;HIF1A:-0.461190612252;PAX6:-0.461521785104;POU1F1:-0.466334711984;ATF2:-0.466671529004;ZBTB6:-0.47678499994;NHLH1,2:-0.481675060541;NKX2-3_NKX2-5:-0.483576171033;PATZ1:-0.513814621341;FOXQ1:-0.51522171787;CREB1:-0.517092976428;RREB1:-0.529698993607;HOX{A6,A7,B6,B7}:-0.533549005984;FOXP3:-0.541887046707;HMGA1,2:-0.547986164353;SOX2:-0.560845459733;STAT1,3:-0.566085099629;ETS1,2:-0.582553666145;SPI1:-0.591424920113;GCM1,2:-0.614696771837;ZBTB16:-0.633057296125;GATA4:-0.643744384189;NFE2L1:-0.654983063298;FOXP1:-0.656173970267;HBP1_HMGB_SSRP1_UBTF:-0.657151933919;HIC1:-0.667532136115;ZEB1:-0.675785870803;FOX{D1,D2}:-0.701709382598;PITX1..3:-0.710700899757;TLX2:-0.711594774097;ATF5_CREB3:-0.718703469277;PAX2:-0.723227026306;MAZ:-0.724117124741;IRF7:-0.728396763962;BREu{core}:-0.733262433011;ATF4:-0.765810019223;HMX1:-0.808002650966;IRF1,2:-0.831652340107;RBPJ:-0.847231203619;MTE{core}:-0.848210219409;PDX1:-0.85564155401;RFX2..5_RFXANK_RFXAP:-0.859770534805;TFAP2B:-0.86409945899;SP1:-0.888480742269;ZFP161:-0.914598318406;MZF1:-0.925327868331;TFAP2{A,C}:-0.938410116911;MED-1{core}:-1.0098924392;MYFfamily:-1.01385735811;FOXN1:-1.06691075732;FOXO1,3,4:-1.10233723162;TGIF1:-1.13204844681;MYOD1:-1.14115364053;IKZF2:-1.14406672153;EP300:-1.1945690831;EGR1..3:-1.24874174434;SREBF1,2:-1.43944080192 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11214-116A8;search_select_hide=table117:FF:11214-116A8 | |||
}} | }} | ||
Latest revision as of 16:24, 3 June 2020
| Name: | Mesenchymal stem cells - umbilical, donor0 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12492 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12492
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12492
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0242 |
| 10 | 10 | 0.12 |
| 100 | 100 | 0.127 |
| 101 | 101 | 0.609 |
| 102 | 102 | 0.693 |
| 103 | 103 | 0.0626 |
| 104 | 104 | 0.0553 |
| 105 | 105 | 0.808 |
| 106 | 106 | 0.603 |
| 107 | 107 | 0.233 |
| 108 | 108 | 0.924 |
| 109 | 109 | 0.0112 |
| 11 | 11 | 0.0231 |
| 110 | 110 | 0.0207 |
| 111 | 111 | 0.602 |
| 112 | 112 | 0.844 |
| 113 | 113 | 0.751 |
| 114 | 114 | 0.253 |
| 115 | 115 | 0.743 |
| 116 | 116 | 0.0139 |
| 117 | 117 | 0.168 |
| 118 | 118 | 0.13 |
| 119 | 119 | 0.429 |
| 12 | 12 | 0.538 |
| 120 | 120 | 0.037 |
| 121 | 121 | 0.805 |
| 122 | 122 | 0.448 |
| 123 | 123 | 0.417 |
| 124 | 124 | 0.94 |
| 125 | 125 | 0.403 |
| 126 | 126 | 0.416 |
| 127 | 127 | 0.0747 |
| 128 | 128 | 0.405 |
| 129 | 129 | 0.842 |
| 13 | 13 | 0.0543 |
| 130 | 130 | 0.0596 |
| 131 | 131 | 0.385 |
| 132 | 132 | 0.654 |
| 133 | 133 | 0.335 |
| 134 | 134 | 0.886 |
| 135 | 135 | 0.729 |
| 136 | 136 | 0.231 |
| 137 | 137 | 0.133 |
| 138 | 138 | 0.0729 |
| 139 | 139 | 0.811 |
| 14 | 14 | 0.653 |
| 140 | 140 | 0.795 |
| 141 | 141 | 0.809 |
| 142 | 142 | 0.466 |
| 143 | 143 | 0.185 |
| 144 | 144 | 0.754 |
| 145 | 145 | 0.497 |
| 146 | 146 | 0.0689 |
| 147 | 147 | 0.232 |
| 148 | 148 | 0.11 |
| 149 | 149 | 0.199 |
| 15 | 15 | 0.23 |
| 150 | 150 | 0.583 |
| 151 | 151 | 0.623 |
| 152 | 152 | 0.43 |
| 153 | 153 | 0.334 |
| 154 | 154 | 0.667 |
| 155 | 155 | 0.352 |
| 156 | 156 | 0.54 |
| 157 | 157 | 0.859 |
| 158 | 158 | 0.193 |
| 159 | 159 | 0.425 |
| 16 | 16 | 0.0503 |
| 160 | 160 | 0.0202 |
| 161 | 161 | 0.329 |
| 162 | 162 | 0.355 |
| 163 | 163 | 0.687 |
| 164 | 164 | 0.255 |
| 165 | 165 | 0.756 |
| 166 | 166 | 0.626 |
| 167 | 167 | 0.226 |
| 168 | 168 | 0.514 |
| 169 | 169 | 0.0335 |
| 17 | 17 | 0.242 |
| 18 | 18 | 0.288 |
| 19 | 19 | 0.144 |
| 2 | 2 | 0.778 |
| 20 | 20 | 0.986 |
| 21 | 21 | 0.64 |
| 22 | 22 | 0.293 |
| 23 | 23 | 0.947 |
| 24 | 24 | 0.0902 |
| 25 | 25 | 0.635 |
| 26 | 26 | 0.0129 |
| 27 | 27 | 0.525 |
| 28 | 28 | 0.322 |
| 29 | 29 | 0.0899 |
| 3 | 3 | 0.0701 |
| 30 | 30 | 0.902 |
| 31 | 31 | 0.582 |
| 32 | 32 | 7.59088e-6 |
| 33 | 33 | 0.0838 |
| 34 | 34 | 0.701 |
| 35 | 35 | 0.581 |
| 36 | 36 | 0.0644 |
| 37 | 37 | 0.0435 |
| 38 | 38 | 0.285 |
| 39 | 39 | 0.313 |
| 4 | 4 | 0.818 |
| 40 | 40 | 0.015 |
| 41 | 41 | 0.265 |
| 42 | 42 | 0.259 |
| 43 | 43 | 0.194 |
| 44 | 44 | 0.165 |
| 45 | 45 | 0.91 |
| 46 | 46 | 0.0513 |
| 47 | 47 | 0.042 |
| 48 | 48 | 0.0401 |
| 49 | 49 | 0.256 |
| 5 | 5 | 0.819 |
| 50 | 50 | 0.351 |
| 51 | 51 | 0.177 |
| 52 | 52 | 0.518 |
| 53 | 53 | 0.509 |
| 54 | 54 | 0.858 |
| 55 | 55 | 0.93 |
| 56 | 56 | 0.558 |
| 57 | 57 | 0.179 |
| 58 | 58 | 0.879 |
| 59 | 59 | 0.0817 |
| 6 | 6 | 0.751 |
| 60 | 60 | 0.973 |
| 61 | 61 | 0.234 |
| 62 | 62 | 0.371 |
| 63 | 63 | 0.139 |
| 64 | 64 | 0.0511 |
| 65 | 65 | 0.158 |
| 66 | 66 | 0.133 |
| 67 | 67 | 0.325 |
| 68 | 68 | 0.865 |
| 69 | 69 | 0.286 |
| 7 | 7 | 0.396 |
| 70 | 70 | 0.344 |
| 71 | 71 | 0.0121 |
| 72 | 72 | 0.628 |
| 73 | 73 | 0.202 |
| 74 | 74 | 0.465 |
| 75 | 75 | 0.212 |
| 76 | 76 | 0.663 |
| 77 | 77 | 0.102 |
| 78 | 78 | 0.66 |
| 79 | 79 | 0.042 |
| 8 | 8 | 0.0116 |
| 80 | 80 | 0.94 |
| 81 | 81 | 0.363 |
| 82 | 82 | 0.384 |
| 83 | 83 | 0.0643 |
| 84 | 84 | 0.275 |
| 85 | 85 | 0.536 |
| 86 | 86 | 0.898 |
| 87 | 87 | 0.244 |
| 88 | 88 | 0.52 |
| 89 | 89 | 0.0254 |
| 9 | 9 | 0.504 |
| 90 | 90 | 0.705 |
| 91 | 91 | 0.992 |
| 92 | 92 | 0.983 |
| 93 | 93 | 0.591 |
| 94 | 94 | 0.116 |
| 95 | 95 | 0.0647 |
| 96 | 96 | 0.597 |
| 97 | 97 | 0.834 |
| 98 | 98 | 0.436 |
| 99 | 99 | 0.001 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12492
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000094 human mesenchymal stem cell of umbilical cord-Sciencell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
