FF:11218-116B3: Difference between revisions

Latest revision as of 16:25, 3 June 2020

Name:	Mesenchymal stem cells - hepatic, donor0
Species:	Human (Homo sapiens)
Library ID:	CNhs10845
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal stem cell
cell line	NA
company	Sciencell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	7525
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005427

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10845		CAGE		DRX008361		DRR009233

Accession ID Hg19

Library id		BAM		CTSS
CNhs10845		DRZ000658		DRZ002043

Accession ID Hg38

Library id		BAM		CTSS
CNhs10845		DRZ012008		DRZ013393

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005427

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10013.GCCAAT		sRNA-Seq		DRX037207		DRR041573

Accession ID Hg19

Library id		BAM		CTSS
SRhi10013.GCCAAT		DRZ007215

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0729
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.128
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.132
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.132
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0988
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.286
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.467
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0728
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.132
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.259
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0407
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.111
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.444
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0167
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.281
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0675
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.0243
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.721
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.543
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.585
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.623
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.233
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10845

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0822
MA0003.1	MA0003.1	0.386
MA0004.1	MA0004.1	0.0271
MA0006.1	MA0006.1	0.522
MA0007.1	MA0007.1	0.0377
MA0009.1	MA0009.1	0.885
MA0014.1	MA0014.1	0.62
MA0017.1	MA0017.1	0.609
MA0018.2	MA0018.2	0.0195
MA0019.1	MA0019.1	0.451
MA0024.1	MA0024.1	6.55769e-4
MA0025.1	MA0025.1	0.0546
MA0027.1	MA0027.1	0.447
MA0028.1	MA0028.1	0.0466
MA0029.1	MA0029.1	0.594
MA0030.1	MA0030.1	0.867
MA0031.1	MA0031.1	0.384
MA0035.2	MA0035.2	0.985
MA0038.1	MA0038.1	0.631
MA0039.2	MA0039.2	0.112
MA0040.1	MA0040.1	0.0185
MA0041.1	MA0041.1	0.399
MA0042.1	MA0042.1	0.428
MA0043.1	MA0043.1	0.536
MA0046.1	MA0046.1	0.998
MA0047.2	MA0047.2	0.784
MA0048.1	MA0048.1	0.169
MA0050.1	MA0050.1	0.00704
MA0051.1	MA0051.1	0.013
MA0052.1	MA0052.1	0.866
MA0055.1	MA0055.1	0.65
MA0057.1	MA0057.1	0.958
MA0058.1	MA0058.1	0.0112
MA0059.1	MA0059.1	0.327
MA0060.1	MA0060.1	0.13
MA0061.1	MA0061.1	0.579
MA0062.2	MA0062.2	4.76448e-9
MA0065.2	MA0065.2	0.541
MA0066.1	MA0066.1	0.319
MA0067.1	MA0067.1	0.124
MA0068.1	MA0068.1	0.586
MA0069.1	MA0069.1	0.512
MA0070.1	MA0070.1	0.687
MA0071.1	MA0071.1	0.1
MA0072.1	MA0072.1	0.699
MA0073.1	MA0073.1	0.25
MA0074.1	MA0074.1	0.46
MA0076.1	MA0076.1	3.6331e-4
MA0077.1	MA0077.1	0.0787
MA0078.1	MA0078.1	0.997
MA0079.2	MA0079.2	0.343
MA0080.2	MA0080.2	1.99492e-9
MA0081.1	MA0081.1	7.25576e-4
MA0083.1	MA0083.1	4.91094e-6
MA0084.1	MA0084.1	0.383
MA0087.1	MA0087.1	0.159
MA0088.1	MA0088.1	0.443
MA0090.1	MA0090.1	7.88476e-6
MA0091.1	MA0091.1	0.00233
MA0092.1	MA0092.1	0.00578
MA0093.1	MA0093.1	0.0333
MA0099.2	MA0099.2	0.00239
MA0100.1	MA0100.1	0.907
MA0101.1	MA0101.1	0.0761
MA0102.2	MA0102.2	0.628
MA0103.1	MA0103.1	0.00275
MA0104.2	MA0104.2	0.0881
MA0105.1	MA0105.1	0.733
MA0106.1	MA0106.1	0.691
MA0107.1	MA0107.1	0.116
MA0108.2	MA0108.2	3.62628e-5
MA0111.1	MA0111.1	0.731
MA0112.2	MA0112.2	0.011
MA0113.1	MA0113.1	0.00442
MA0114.1	MA0114.1	0.676
MA0115.1	MA0115.1	0.0846
MA0116.1	MA0116.1	0.176
MA0117.1	MA0117.1	0.978
MA0119.1	MA0119.1	3.50897e-4
MA0122.1	MA0122.1	0.714
MA0124.1	MA0124.1	0.807
MA0125.1	MA0125.1	0.901
MA0131.1	MA0131.1	0.71
MA0135.1	MA0135.1	0.00872
MA0136.1	MA0136.1	1.93579e-9
MA0137.2	MA0137.2	0.85
MA0138.2	MA0138.2	0.565
MA0139.1	MA0139.1	0.877
MA0140.1	MA0140.1	0.445
MA0141.1	MA0141.1	0.765
MA0142.1	MA0142.1	0.0238
MA0143.1	MA0143.1	0.45
MA0144.1	MA0144.1	0.623
MA0145.1	MA0145.1	0.0753
MA0146.1	MA0146.1	0.0951
MA0147.1	MA0147.1	0.117
MA0148.1	MA0148.1	0.195
MA0149.1	MA0149.1	0.735
MA0150.1	MA0150.1	0.919
MA0152.1	MA0152.1	0.0473
MA0153.1	MA0153.1	0.395
MA0154.1	MA0154.1	0.121
MA0155.1	MA0155.1	0.109
MA0156.1	MA0156.1	1.5143e-9
MA0157.1	MA0157.1	0.516
MA0159.1	MA0159.1	0.165
MA0160.1	MA0160.1	0.892
MA0162.1	MA0162.1	0.177
MA0163.1	MA0163.1	0.0355
MA0164.1	MA0164.1	0.747
MA0258.1	MA0258.1	0.161
MA0259.1	MA0259.1	0.926

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10845

Novel motif	Logo	P-value
1	1	0.614
10	10	0.703
100	100	0.175
101	101	0.743
102	102	0.13
103	103	0.125
104	104	0.372
105	105	0.75
106	106	0.309
107	107	0.0933
108	108	0.529
109	109	0.644
11	11	0.524
110	110	0.723
111	111	0.514
112	112	0.63
113	113	0.582
114	114	0.394
115	115	0.296
116	116	0.236
117	117	0.8
118	118	0.57
119	119	0.604
12	12	0.464
120	120	0.61
121	121	0.264
122	122	0.0546
123	123	0.0322
124	124	0.753
125	125	0.103
126	126	0.857
127	127	0.907
128	128	0.0711
129	129	0.351
13	13	0.903
130	130	0.00992
131	131	0.121
132	132	0.417
133	133	0.73
134	134	0.391
135	135	0.625
136	136	0.903
137	137	0.272
138	138	0.155
139	139	0.127
14	14	0.512
140	140	0.136
141	141	0.495
142	142	0.368
143	143	0.692
144	144	0.336
145	145	0.719
146	146	0.235
147	147	0.431
148	148	0.555
149	149	0.00529
15	15	0.873
150	150	0.561
151	151	0.72
152	152	0.0836
153	153	0.8
154	154	0.655
155	155	0.25
156	156	0.515
157	157	0.121
158	158	0.682
159	159	0.899
16	16	0.0393
160	160	0.0738
161	161	0.792
162	162	0.064
163	163	0.069
164	164	0.118
165	165	0.79
166	166	0.137
167	167	0.278
168	168	0.54
169	169	0.0388
17	17	0.422
18	18	0.246
19	19	0.0327
2	2	0.246
20	20	0.859
21	21	0.299
22	22	0.0294
23	23	0.136
24	24	0.976
25	25	0.148
26	26	0.212
27	27	0.992
28	28	0.0754
29	29	0.274
3	3	0.45
30	30	0.705
31	31	0.148
32	32	1.68287e-17
33	33	0.889
34	34	0.537
35	35	0.368
36	36	0.521
37	37	0.262
38	38	0.997
39	39	0.125
4	4	0.485
40	40	0.588
41	41	0.0804
42	42	0.901
43	43	0.28
44	44	0.946
45	45	0.505
46	46	0.397
47	47	0.858
48	48	0.978
49	49	0.168
5	5	0.299
50	50	0.197
51	51	0.252
52	52	0.868
53	53	0.309
54	54	0.555
55	55	0.988
56	56	0.786
57	57	0.523
58	58	0.963
59	59	0.232
6	6	0.686
60	60	0.956
61	61	0.585
62	62	0.839
63	63	0.161
64	64	0.935
65	65	0.141
66	66	0.988
67	67	0.223
68	68	0.474
69	69	0.297
7	7	0.778
70	70	0.906
71	71	0.122
72	72	0.78
73	73	0.137
74	74	0.636
75	75	0.667
76	76	0.954
77	77	0.0107
78	78	0.502
79	79	0.275
8	8	0.11
80	80	0.61
81	81	0.831
82	82	0.93
83	83	0.0677
84	84	0.353
85	85	0.008
86	86	0.74
87	87	0.642
88	88	0.218
89	89	0.131
9	9	0.391
90	90	0.51
91	91	0.902
92	92	0.216
93	93	0.153
94	94	0.985
95	95	0.447
96	96	0.447
97	97	0.386
98	98	0.463
99	99	0.00828

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10845

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000098 human hepatic mesenchymal stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002195 (hepatic stem cell)
0002571 (hepatic mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000098 (human hepatic mesenchymal stem cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008253
+|DRA_sample_Accession=CAGE@SAMD00005427
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005427
+|accession_numbers=CAGE;DRX008361;DRR009233;DRZ000658;DRZ002043;DRZ012008;DRZ013393
+|accession_numbers_RNASeq=sRNA-Seq;DRX037207;DRR041573;DRZ007215
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002195,CL:0002571
@@ Line 8: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.30!200.09!HAND2;;chr16:86544113..86544145,+!p1@FOXF1!1.95!109.11!FOXF1;;chr6:134210243..134210257,+!p1@TCF21!1.84!68.59!TCF21;;chr9:77112244..77112262,+!p1@RORB!1.71!55.44!RORB;;chr8:11561684..11561751,+!p1@GATA4!1.58!36.96!GATA4;;chr5:92918919..92918942,+!p1@NR2F1!1.57!154.60!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.54!36.96!NR2F1;;chr4:174451350..174451363,-!p3@HAND2!1.51!31.63!HAND2;;chr5:92919100..92919135,+!p3@NR2F1!1.45!32.70!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!1.41!24.88!HIF3A;;chr11:61520075..61520136,+!p1@C11orf9!1.35!44.78!C11orf9;;chr11:46299199..46299233,+!p1@CREB3L1!1.33!101.64!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.55!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.22!25.94!TCF12;;chr5:92919375..92919438,+!p6@NR2F1!1.19!15.64!NR2F1;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.90!ZBTB16;;chr7:35293685..35293718,-!p1@TBX20!1.17!13.86!TBX20;;chr14:62162285..62162296,+!p3@HIF1A!1.14!66.81!HIF1A;;chr17:1959369..1959388,+!p2@HIC1!1.14!33.76!HIC1;;chr19:45971246..45971265,+!p1@FOSB!1.13!230.29!FOSB;;chr17:59477233..59477263,+!p1@TBX2!1.09!35.18!TBX2;;chr3:126076242..126076257,-!p1@KLF15!1.06!13.15!KLF15;;chr9:73028814..73028895,-!p1@KLF9!1.04!98.80!KLF9;;chr18:19749386..19749404,+!p2@GATA6!1.03!13.86!GATA6;;chr14:62162258..62162269,+!p2@HIF1A!1.01!90.98!HIF1A;;chr12:100867653..100867677,+!p2@NR1H4!1.01!9.24!NR1H4;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.31!NR2F1;;chr12:100867627..100867652,+!p1@NR1H4!0.96!8.17!NR1H4;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!219.63!TSC22D3;;chr12:100867777..100867788,+!p5@NR1H4!0.95!7.82!NR1H4;;chr14:75745523..75745537,+!p1@FOS!0.93!934.33!FOS;;chr9:73029219..73029289,-!p2@KLF9!0.92!23.10!KLF9;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.53!BNC1;;chr1:59249688..59249703,-!p3@JUN!0.91!44.42!JUN;;chr12:100867736..100867750,+!p4@NR1H4!0.91!7.11!NR1H4;;chr5:92919312..92919334,+!p13@NR2F1!0.89!6.75!NR2F1;;chr17:59477197..59477212,+!p2@TBX2!0.88!11.73!TBX2;;chr8:48650715..48650735,-!p1@CEBPD!0.87!858.63!CEBPD;;chr5:137804484..137804498,+!p2@EGR1!0.86!26.65!EGR1;;chr2:66662249..66662267,+!p2@MEIS1!0.86!25.23!MEIS1;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.35!TWIST1;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.95!PITX1;;chr17:46655704..46655718,-!p2@HOXB4!0.86!9.60!HOXB4;;chr17:59477275..59477286,+!p3@TBX2!0.86!8.53!TBX2;;chr2:66662281..66662308,+!p1@MEIS1!0.85!22.39!MEIS1;;chr5:92918894..92918912,+!p2@NR2F1!0.85!20.97!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.85!19.90!GATA6;;chr17:46132044..46132080,+!p4@NFE2L1!0.85!6.04!NFE2L1;;chr12:52445218..52445237,+!p1@NR4A1!0.84!79.61!NR4A1;;chr13:37494365..37494381,-!p1@SMAD9!0.84!10.66!SMAD9;;chr16:8962202..8962222,-!p3@CARHSP1!0.83!10.66!CARHSP1;;chr5:92919452..92919496,+!p11@NR2F1!0.83!5.69!NR2F1;;chr6:1389789..1389821,+!p1@FOXF2!0.82!7.82!FOXF2;;chr3:126076264..126076305,-!p2@KLF15!0.81!7.82!KLF15;;chr20:48599506..48599526,+!p1@SNAI1!0.80!36.61!SNAI1;;chr5:137801160..137801176,+!p1@EGR1!0.78!549.44!EGR1;;chr7:19157248..19157268,-!p1@TWIST1!0.78!14.93!TWIST1;;chr2:66662895..66662907,+!p3@MEIS1!0.78!6.40!MEIS1;;chr11:16627528..16627550,-!p7@SOX6!0.78!4.98!SOX6;;chr8:106330656..106330684,+!p1@ZFPM2!0.74!12.79!ZFPM2;;chr17:46621937..46621966,-!p2@HOXB2!0.73!12.79!HOXB2;;chr17:46655730..46655791,-!p1@HOXB4!0.73!11.73!HOXB4;;chr3:69915385..69915438,+!p3@MITF!0.72!4.26!MITF;;chr1:40105299..40105326,-!p1@HEYL!0.72!4.26!HEYL;;chr5:92919194..92919204,+!p16@NR2F1!0.72!4.26!NR2F1;;chr10:63809106..63809127,+!p1@ARID5B!0.71!63.26!ARID5B;;chr15:96873984..96873999,+!p3@NR2F2!0.71!34.12!NR2F2;;chr1:164528616..164528660,+!p5@PBX1!0.71!9.24!PBX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.71!7.46!CREB3L1;;chr7:149470540..149470596,-!p2@ZNF467!0.71!5.69!ZNF467;;chr5:92920456..92920488,+!p9@NR2F1!0.71!4.98!NR2F1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.40!ZBTB38;;chr14:62162224..62162254,+!p1@HIF1A!0.69!645.39!HIF1A;;chr17:1958388..1958404,+!p1@HIC1!0.69!28.08!HIC1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.46!ZFP106;;chr7:35293665..35293680,-!p2@TBX20!0.69!3.91!TBX20;;chr9:73028786..73028797,-!p11@KLF9!0.69!3.91!KLF9;;chr14:74256787..74256858,-!p6@C14orf43!0.69!3.91!C14orf43;;chr10:63853436..63853442,+!p4@ARID5B!0.68!23.10!ARID5B;;chr7:149470641..149470694,-!p1@ZNF467!0.68!19.19!ZNF467;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.41!STAT6;;chr2:185463247..185463263,+!p1@ZNF804A!0.67!7.11!ZNF804A;;chr14:24837368..24837401,+!p1@NFATC4!0.66!9.24!NFATC4;;chr2:121493492..121493537,+!p2@GLI2!0.66!6.40!GLI2;;chr9:73028638..73028650,-!p7@KLF9!0.66!6.04!KLF9;;chr1:164528911..164528940,+!p7@PBX1!0.66!5.69!PBX1;;chr19:46800289..46800327,+!p2@HIF3A!0.66!3.55!HIF3A;;chr7:1577899..1577943,+!p3@MAFK!0.66!3.55!MAFK;;chr11:113930401..113930422,+!p3@ZBTB16!0.66!3.55!ZBTB16;;chr20:42543441..42543497,+!p1@TOX2!0.65!18.12!TOX2;;chr19:31840130..31840160,-!p2@TSHZ3!0.65!5.69!TSHZ3;;chr20:2673383..2673441,+!p1@EBF4!0.64!5.69!EBF4;;chr15:96874012..96874042,+!p2@NR2F2!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002571;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 39: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11218-116B3
 |is_a=EFO:0002091;;FF:0000098
 |is_obsolete=
-|library_ids=CNhs10845
+|library_id=CNhs10845
+|library_id_phase_based=2:CNhs10845
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11218
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GCCAAT.11218
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11218
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GCCAAT.11218
 |name=Mesenchymal stem cells - hepatic, donor0
 |namespace=FANTOM5
@@ Line 48: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10845,LSID700,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10013,,,
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@@ Line 64: / Line 82: @@
 |rna_tube_id=116B3
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 |sample_age=
 |sample_category=primary cells
@@ Line 87: / Line 106: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11218-116B3;search_select_hide=table117:FF:11218-116B3
-|DRA_sample_Accession=CAGE@DRS008253
-|accession_numbers=DRX008361;DRR009233;DRZ000658;DRZ002043;CAGE
-|library_id=CNhs10845
 }}

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Latest revision as of 16:25, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0