FF:11223-116B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON: | |DRA_sample_Accession=CAGE@SAMD00004778 | ||
|accession_numbers=CAGE;DRX008277;DRR009149;DRZ000574;DRZ001959;DRZ011924;DRZ013309 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11223-116B8 | |id=FF:11223-116B8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |||
|library_id=CNhs12493 | |||
|library_id_phase_based=2:CNhs12493 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11223 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11223 | |||
|name=Fibroblast - Periodontal Ligament, donor4 (PL29) | |name=Fibroblast - Periodontal Ligament, donor4 (PL29) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12493,LSID916,release011,COMPLETED | |profile_hcage=CNhs12493,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.036106968488175,0.279381368666597,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.266955553229157,0,0,0.307308517091259,0,0,0,0,0,0,0,0,0,0,0,0,-0.0509922161584611,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0147862215095659,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801870992081934,0,0,0,0.0615788460901157,0.0502863419524039,0,0.158054039799331,0.0790270198996655,0,0.0600186885616243,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0404690247264076,0,0,0,0,-0.142444886956699,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0600186885616243,0,0,0,0,0,0,0,0,0.158054039799331,0,0,0.0265063620121726,0,0.13581148738012,-0.143515142523472,0,0,0.173315940337675,0,0,0,0,0.158054039799331,0.158054039799331,0,0,0,0.995449991534513,0,-0.0504125515893149,0,0,0,0,0.0290620013662528,-0.305472230898407,0,0.00819866359909745,-0.0683442610773682,0,0,0,0,-0.00875692468605185,0,0.0371745560055901,0.19096506897432,-0.063557548303476,0.0658102863641657,-0.055712496781182,0,0,0,0.20346948646673,0.31671672053215,0,0,0.262196021213856,-0.0445069999117906,0,0,1.54426946817579,0,0.143813357772149,0.215150497335118,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261805876576039,0.0379248528182455,0,0,0,0,0.250713780888075,0,0,-0.215232116157236,0.00405326081287627,-0.0297824371220097,-0.229519922247236,0,0.307507979122215,0.00454539196358073,0.066522890758713,-0.146502575701603,0.126283387926599,0.174931729947367,0,0.22987353351855,0.163195308140778,0.076694750964326,0.0213371263851225,0.0089007112961982,0.238907076729781,0.03728878759263,0,0,0.126174742754481,0.13922775222693,0,0,0.437390102719982,0.000123606464864146,0.199171194936421,0.063768052561133,-0.00428252493822223,-0.15182454190382,0.11852151134266,-0.0171713460264739,0.0335951324281231,0.291733207486578,0,0,0,-0.0567386482277578,0.0405973604970998,-0.0554572974948171,0.0431670202426127,-0.210292224513244,0.0897097787219625,0,0.0456452382990395,0.00665733362076115,0,0.00231163241713195,0.0755746272655916,0,0,0.0529180357458701,0,0,-0.0445531341295526,-0.174578693532952,0.13205788794167,0,-0.0235013022137532,0,-0.077153526917526,0,-0.189592815261122,0.221567479086369,0,-0.0189485672984989,0,0.0268104331017614,0.207709670516246,0.00673501356619277,-0.0574813558945231,0.0996072129875056,-0.120574227643603,-0.0137053933507619,0.0615788460901157,0.479617160190999,0.0159483325632698,1.73121101362363,0.10664904591637,0.374616491845453,-0.175042479296367,-0.0196134499438219,0.227560133568588,0,0.11938087597879,0,-0.151584794155897,0,-0.148395397631774,0.256676628787562,0.255385883818878,0.184199021872267,0,0.200595763297819,0.459379560791676,0,0.0369805041377521,0,0,0.00768695646469142,-0.332782517015368,-0.211650427864589,0.134695780618542,0,0.318903931924353,0,0,-0.105959638087302,-0.235476037764389,0,-0.028987448228964,0.00069479191873223,-0.163950934325174,0.157714163862803,0.158054039799331,0,0.048974920406839,0,0.273685237297737,-0.241014614320816,0,-0.115327671633476,0.111587108010459,0.072178470807605,0.0738339152943515,0,0,-0.0194737261658449,0,0.41205141157439,0,0,0.234298951249826,0,0,0,0.158054039799331,-0.116238670658099,0,0,0,0,0,0,0,0.112980462592994,0.0100801192807664,0,0,0,0,0,0,0,0.00414004824069933,0,0,0.959281251631436,-0.00218817534966975,0.150667821621317,0,0,0,0,0.224541704316646,-0.045182522295393,0,-0.131862706497632,0,0,0,0,0.0719130500101194,0,0,0,0,-0.057730457053664,-0.106056735966151,0,0,0,-0.27695440160179,0,0,0,0.0153569228886833,0.261090019253602,0,0,0,0,0.114649667704133,-0.0815818795468414,0,0.0998539538852347,0.468327123282055,-0.544044626839596,0,0.364913449497214,-0.261347131789888,0,0,0.189447528988337,-0.0564751321847754,0,-0.0169180226537476,0,0,0,0,0,0.158054039799331,-0.0562604726004249,0,0,0,0,0,0,0,0,0,0,0,-0.137466672826433,-0.0922240566585104,0.14022779387319,0,0,0,0,0,0,-0.0241060230789031,0.0179232853564975,0.0790270198996655,0,0,0,0,0,0,0,-0.0311608327931212,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.558762737333194,0,0,0.162902974676607,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034734953763883,0.036106968488175,0,0,0,0,0,0,0,-0.0011480609083534,0,0,0,0,-0.113884373708977,0,0,0,0.168888852508581,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690118142675592,0,0.158054039799331,0.0783608474229525,0,0,0.207339829503446,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0176590924147506,0,0,0,0,0,0,0,0.266955553229157,0,0,-0.0920328098005262,0,0,0,0,0,0,0.216478811668448,0.0995674570812855,0.00763291748826355,0,0,0,0.165746980952606,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.158054039799331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0450156566242488,0.158054039799331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158054039799331,0.0780355715306923,0,0,0,0.151827219840171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0405154174531802,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.0736774075693036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158054039799331,-0.110238935645592,0,0,0,0,0.110416929138412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0955565684891743,0,0,-0.135571753974347,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.90437153946436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.142444886956699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0585306576948125,0,0,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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=22.65912 | |rna_weight_ug=22.65912 | ||
|sample_age=18 | |sample_age=18 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.83165858191868e-230!GO:0005737;cytoplasm;7.56813167378128e-185!GO:0043226;organelle;3.29244492738643e-182!GO:0043229;intracellular organelle;6.75562374654467e-182!GO:0043231;intracellular membrane-bound organelle;9.8830523276757e-179!GO:0043227;membrane-bound organelle;2.13733762911077e-178!GO:0044422;organelle part;1.22012804749062e-138!GO:0044446;intracellular organelle part;2.76822887139053e-137!GO:0044444;cytoplasmic part;7.57200528433437e-127!GO:0032991;macromolecular complex;1.04919418113415e-97!GO:0044237;cellular metabolic process;2.06135221957806e-81!GO:0044238;primary metabolic process;4.35902131629007e-81!GO:0005515;protein binding;7.57771073100085e-80!GO:0030529;ribonucleoprotein complex;4.99760142064632e-77!GO:0043170;macromolecule metabolic process;3.66419530459313e-76!GO:0005634;nucleus;1.47532746868752e-69!GO:0043233;organelle lumen;5.08507770028389e-66!GO:0031974;membrane-enclosed lumen;5.08507770028389e-66!GO:0044428;nuclear part;7.51215704156281e-66!GO:0003723;RNA binding;7.80415421612992e-63!GO:0005739;mitochondrion;1.91847649833004e-60!GO:0016043;cellular component organization and biogenesis;3.27729221892682e-53!GO:0043234;protein complex;2.65580678810752e-51!GO:0019538;protein metabolic process;3.42940423160261e-48!GO:0031090;organelle membrane;5.72132885112595e-47!GO:0005840;ribosome;1.29749550600064e-45!GO:0044260;cellular macromolecule metabolic process;1.29806538923094e-43!GO:0044267;cellular protein metabolic process;9.96565794276234e-43!GO:0006412;translation;1.58746574131798e-42!GO:0043283;biopolymer metabolic process;8.2492109259386e-42!GO:0033036;macromolecule localization;8.61208047725154e-42!GO:0015031;protein transport;1.02621327408384e-41!GO:0006396;RNA processing;1.19610472973709e-40!GO:0044429;mitochondrial part;2.65470762314037e-40!GO:0003735;structural constituent of ribosome;2.6699974401639e-40!GO:0031981;nuclear lumen;2.41937685683908e-39!GO:0008104;protein localization;8.83912414593136e-39!GO:0045184;establishment of protein localization;1.8853544417042e-38!GO:0031967;organelle envelope;2.52886046177435e-36!GO:0031975;envelope;4.32433152699697e-36!GO:0009058;biosynthetic process;5.14020835576353e-36!GO:0006996;organelle organization and biogenesis;1.57827960939248e-35!GO:0016071;mRNA metabolic process;1.01887352387681e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02098078889216e-34!GO:0005829;cytosol;1.06704965939634e-34!GO:0010467;gene expression;1.08936090323995e-34!GO:0043228;non-membrane-bound organelle;1.23124388365995e-34!GO:0043232;intracellular non-membrane-bound organelle;1.23124388365995e-34!GO:0033279;ribosomal subunit;1.65475344208394e-34!GO:0009059;macromolecule biosynthetic process;2.75730749924988e-34!GO:0046907;intracellular transport;6.29173303576385e-34!GO:0044249;cellular biosynthetic process;5.91014453303798e-33!GO:0008380;RNA splicing;5.1579810584625e-32!GO:0006397;mRNA processing;6.42083771643335e-30!GO:0065003;macromolecular complex assembly;2.46551679333017e-29!GO:0006886;intracellular protein transport;2.46343782505954e-27!GO:0022607;cellular component assembly;1.87120985102415e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.86707213315141e-26!GO:0005740;mitochondrial envelope;4.85391940415758e-26!GO:0006259;DNA metabolic process;7.22516196954892e-26!GO:0007049;cell cycle;1.07917779001835e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.92994156705936e-25!GO:0005654;nucleoplasm;4.65068285321641e-25!GO:0031966;mitochondrial membrane;2.14661922984361e-24!GO:0019866;organelle inner membrane;4.90989041290112e-24!GO:0005681;spliceosome;7.365033628258e-23!GO:0051641;cellular localization;9.40912992510274e-23!GO:0051649;establishment of cellular localization;1.36793813863482e-22!GO:0000166;nucleotide binding;1.43482452712059e-22!GO:0005743;mitochondrial inner membrane;2.68762258439428e-22!GO:0044451;nucleoplasm part;5.28619684591552e-21!GO:0006119;oxidative phosphorylation;1.45933442998415e-20!GO:0016462;pyrophosphatase activity;2.21220725204928e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.45774828423689e-20!GO:0012505;endomembrane system;3.62933478662095e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.69772116439434e-20!GO:0022402;cell cycle process;3.92273612807062e-20!GO:0044445;cytosolic part;8.52691297434072e-20!GO:0017111;nucleoside-triphosphatase activity;1.15231847438058e-19!GO:0000278;mitotic cell cycle;2.93129179060361e-19!GO:0006457;protein folding;3.95662556867615e-19!GO:0005783;endoplasmic reticulum;3.96387049482075e-19!GO:0044455;mitochondrial membrane part;4.16678499195845e-19!GO:0015934;large ribosomal subunit;8.24621589567037e-19!GO:0003676;nucleic acid binding;9.26349404844093e-19!GO:0048770;pigment granule;1.7066607124076e-18!GO:0042470;melanosome;1.7066607124076e-18!GO:0031980;mitochondrial lumen;2.94569542673073e-17!GO:0005759;mitochondrial matrix;2.94569542673073e-17!GO:0005794;Golgi apparatus;3.65628150427514e-17!GO:0008134;transcription factor binding;5.01677122454671e-17!GO:0016874;ligase activity;7.04636983450572e-17!GO:0015935;small ribosomal subunit;9.85119022276756e-17!GO:0032553;ribonucleotide binding;1.07423051090577e-16!GO:0032555;purine ribonucleotide binding;1.07423051090577e-16!GO:0022618;protein-RNA complex assembly;2.39379614869107e-16!GO:0017076;purine nucleotide binding;2.48768125819827e-16!GO:0006512;ubiquitin cycle;3.13675240764405e-16!GO:0005746;mitochondrial respiratory chain;8.74568454081739e-16!GO:0044432;endoplasmic reticulum part;1.35340743558149e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.61363339172022e-15!GO:0005730;nucleolus;2.50729434069464e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.90657280017178e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.39216386438438e-15!GO:0019941;modification-dependent protein catabolic process;6.02430850707726e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.02430850707726e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.34280312979412e-15!GO:0043285;biopolymer catabolic process;8.54435548195607e-15!GO:0051186;cofactor metabolic process;8.85116801767073e-15!GO:0016070;RNA metabolic process;9.43198841686275e-15!GO:0044257;cellular protein catabolic process;9.6587180728179e-15!GO:0044265;cellular macromolecule catabolic process;1.49118575516182e-14!GO:0005694;chromosome;1.95227375757698e-14!GO:0006605;protein targeting;1.98418099766823e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.73425252736303e-14!GO:0003954;NADH dehydrogenase activity;3.73425252736303e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.73425252736303e-14!GO:0022403;cell cycle phase;3.73628277810877e-14!GO:0051082;unfolded protein binding;4.58197147823201e-14!GO:0008135;translation factor activity, nucleic acid binding;5.35028344931056e-14!GO:0048193;Golgi vesicle transport;1.15002775833296e-13!GO:0000087;M phase of mitotic cell cycle;1.49353613299056e-13!GO:0005524;ATP binding;2.08329221253927e-13!GO:0007067;mitosis;2.66341465719368e-13!GO:0030163;protein catabolic process;2.71612284695855e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.99500636191801e-13!GO:0005761;mitochondrial ribosome;3.18242755954279e-13!GO:0000313;organellar ribosome;3.18242755954279e-13!GO:0043412;biopolymer modification;3.94234251655963e-13!GO:0051276;chromosome organization and biogenesis;4.17045691372378e-13!GO:0032559;adenyl ribonucleotide binding;4.25708801760674e-13!GO:0006974;response to DNA damage stimulus;4.70830315850563e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.3839915894444e-13!GO:0009057;macromolecule catabolic process;5.40170756673295e-13!GO:0044427;chromosomal part;7.55529376565858e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.08023310354213e-12!GO:0000375;RNA splicing, via transesterification reactions;1.08023310354213e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.08023310354213e-12!GO:0016192;vesicle-mediated transport;1.08487927787106e-12!GO:0051301;cell division;1.26587020354062e-12!GO:0030554;adenyl nucleotide binding;1.28073759953499e-12!GO:0044248;cellular catabolic process;1.77014598934289e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.18620343852111e-12!GO:0045271;respiratory chain complex I;3.18620343852111e-12!GO:0005747;mitochondrial respiratory chain complex I;3.18620343852111e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.58219320687934e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.9560847130418e-12!GO:0042773;ATP synthesis coupled electron transport;3.9560847130418e-12!GO:0006464;protein modification process;7.94243238917538e-12!GO:0003712;transcription cofactor activity;8.4527581613076e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.94569558157977e-12!GO:0000074;regulation of progression through cell cycle;1.24766767039902e-11!GO:0012501;programmed cell death;1.24766767039902e-11!GO:0051726;regulation of cell cycle;1.25646727445144e-11!GO:0005793;ER-Golgi intermediate compartment;1.6037177439092e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.40757923622555e-11!GO:0006732;coenzyme metabolic process;2.67175538537809e-11!GO:0006915;apoptosis;3.68956116751068e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.31937476064382e-11!GO:0005635;nuclear envelope;4.99199286250259e-11!GO:0000279;M phase;8.31595814882152e-11!GO:0006323;DNA packaging;9.35521121762847e-11!GO:0003743;translation initiation factor activity;9.98703709566439e-11!GO:0042254;ribosome biogenesis and assembly;1.26403828074229e-10!GO:0005789;endoplasmic reticulum membrane;1.40648088605265e-10!GO:0008219;cell death;1.44042853355322e-10!GO:0016265;death;1.44042853355322e-10!GO:0048523;negative regulation of cellular process;1.50151431454202e-10!GO:0016604;nuclear body;1.65272020857675e-10!GO:0006913;nucleocytoplasmic transport;1.66167519303895e-10!GO:0043687;post-translational protein modification;2.31404630460156e-10!GO:0051169;nuclear transport;3.4704253129947e-10!GO:0008639;small protein conjugating enzyme activity;3.53964738312541e-10!GO:0006281;DNA repair;3.67933397872533e-10!GO:0006413;translational initiation;4.13562573827793e-10!GO:0031965;nuclear membrane;4.13562573827793e-10!GO:0015630;microtubule cytoskeleton;4.13562573827793e-10!GO:0044453;nuclear membrane part;4.25010346367295e-10!GO:0004842;ubiquitin-protein ligase activity;8.34570055006032e-10!GO:0042623;ATPase activity, coupled;8.68156260274385e-10!GO:0016887;ATPase activity;9.56631599103361e-10!GO:0019787;small conjugating protein ligase activity;1.03003397031622e-09!GO:0009055;electron carrier activity;1.0403098821204e-09!GO:0006260;DNA replication;1.04309681280548e-09!GO:0006446;regulation of translational initiation;1.08145464964251e-09!GO:0009719;response to endogenous stimulus;1.31581698639067e-09!GO:0009259;ribonucleotide metabolic process;2.12206012606896e-09!GO:0065004;protein-DNA complex assembly;2.14111561561837e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.30913231197635e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.9694294337725e-09!GO:0006333;chromatin assembly or disassembly;3.16535641942975e-09!GO:0008565;protein transporter activity;3.52074259039952e-09!GO:0006366;transcription from RNA polymerase II promoter;3.54786291307798e-09!GO:0006163;purine nucleotide metabolic process;4.41746021860617e-09!GO:0009150;purine ribonucleotide metabolic process;6.70314807751948e-09!GO:0050794;regulation of cellular process;6.74386871827281e-09!GO:0000785;chromatin;7.98694470992504e-09!GO:0048519;negative regulation of biological process;1.04879467458159e-08!GO:0009141;nucleoside triphosphate metabolic process;1.102114559607e-08!GO:0003924;GTPase activity;1.24812307632974e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.24825234577194e-08!GO:0016881;acid-amino acid ligase activity;1.71778035688431e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.89395354665265e-08!GO:0006164;purine nucleotide biosynthetic process;1.89818987547404e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.08040592355691e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.08040592355691e-08!GO:0017038;protein import;2.12871997785775e-08!GO:0009260;ribonucleotide biosynthetic process;2.14877702808184e-08!GO:0016607;nuclear speck;2.72710518495633e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.73478394593805e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.85347509477166e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.85347509477166e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.85347509477166e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.74102540993139e-08!GO:0009060;aerobic respiration;5.24367810197079e-08!GO:0030120;vesicle coat;5.32790239800492e-08!GO:0030662;coated vesicle membrane;5.32790239800492e-08!GO:0043038;amino acid activation;5.80618864451246e-08!GO:0006418;tRNA aminoacylation for protein translation;5.80618864451246e-08!GO:0043039;tRNA aminoacylation;5.80618864451246e-08!GO:0005643;nuclear pore;6.59385790528836e-08!GO:0015986;ATP synthesis coupled proton transport;7.42103499990958e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.42103499990958e-08!GO:0004386;helicase activity;7.970980975136e-08!GO:0006334;nucleosome assembly;8.7249004500172e-08!GO:0044431;Golgi apparatus part;8.87042932717185e-08!GO:0006399;tRNA metabolic process;9.38021335771557e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.41172711310903e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.41172711310903e-08!GO:0031324;negative regulation of cellular metabolic process;9.76158004211715e-08!GO:0005768;endosome;1.29788702905893e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.31394110206543e-07!GO:0046034;ATP metabolic process;1.36204003753179e-07!GO:0045333;cellular respiration;1.48756126735627e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.57382425338222e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.57382425338222e-07!GO:0006461;protein complex assembly;1.75488941701698e-07!GO:0019829;cation-transporting ATPase activity;1.82781138490397e-07!GO:0048475;coated membrane;1.84618756725495e-07!GO:0030117;membrane coat;1.84618756725495e-07!GO:0031497;chromatin assembly;1.93498155259532e-07!GO:0065002;intracellular protein transport across a membrane;2.09091400109793e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.15448273528695e-07!GO:0005788;endoplasmic reticulum lumen;2.52206595892211e-07!GO:0009056;catabolic process;2.97006937895487e-07!GO:0051188;cofactor biosynthetic process;3.60614221596502e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.78484807746041e-07!GO:0008026;ATP-dependent helicase activity;4.16363103945272e-07!GO:0046930;pore complex;4.8738909295915e-07!GO:0045786;negative regulation of progression through cell cycle;5.06865789830523e-07!GO:0003697;single-stranded DNA binding;5.21164229702664e-07!GO:0051246;regulation of protein metabolic process;5.42862365861811e-07!GO:0043067;regulation of programmed cell death;6.35859229184302e-07!GO:0051187;cofactor catabolic process;6.45434276861189e-07!GO:0043566;structure-specific DNA binding;7.26249411934758e-07!GO:0042981;regulation of apoptosis;7.38958054172961e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.46622098709209e-07!GO:0006099;tricarboxylic acid cycle;7.48662538749395e-07!GO:0046356;acetyl-CoA catabolic process;7.48662538749395e-07!GO:0006754;ATP biosynthetic process;9.4137608765019e-07!GO:0006753;nucleoside phosphate metabolic process;9.4137608765019e-07!GO:0006364;rRNA processing;1.01575371061194e-06!GO:0005667;transcription factor complex;1.25871040314135e-06!GO:0005813;centrosome;1.26472259710393e-06!GO:0006793;phosphorus metabolic process;1.42662288894386e-06!GO:0006796;phosphate metabolic process;1.42662288894386e-06!GO:0031252;leading edge;1.42662288894386e-06!GO:0016049;cell growth;1.42662288894386e-06!GO:0005819;spindle;1.44247336482094e-06!GO:0008361;regulation of cell size;1.4491598358996e-06!GO:0009109;coenzyme catabolic process;1.64952409128049e-06!GO:0051329;interphase of mitotic cell cycle;1.70239482280156e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.70239482280156e-06!GO:0006084;acetyl-CoA metabolic process;1.91357354011498e-06!GO:0009892;negative regulation of metabolic process;2.00197340142101e-06!GO:0007005;mitochondrion organization and biogenesis;2.00321908899253e-06!GO:0000151;ubiquitin ligase complex;2.00378321211108e-06!GO:0016072;rRNA metabolic process;2.18448564513779e-06!GO:0016564;transcription repressor activity;2.28637678958185e-06!GO:0000245;spliceosome assembly;2.30658864634966e-06!GO:0032446;protein modification by small protein conjugation;2.40752814238858e-06!GO:0003714;transcription corepressor activity;2.4854333240415e-06!GO:0007010;cytoskeleton organization and biogenesis;2.76290647831549e-06!GO:0006403;RNA localization;2.80368863174603e-06!GO:0005815;microtubule organizing center;2.82480724257304e-06!GO:0009117;nucleotide metabolic process;2.89086721751998e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.14572352117334e-06!GO:0050657;nucleic acid transport;3.41089594349611e-06!GO:0051236;establishment of RNA localization;3.41089594349611e-06!GO:0050658;RNA transport;3.41089594349611e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.7840826716009e-06!GO:0016568;chromatin modification;4.11270948511308e-06!GO:0016491;oxidoreductase activity;4.15955683019507e-06!GO:0005525;GTP binding;4.31086181994681e-06!GO:0051170;nuclear import;4.41323434941548e-06!GO:0016567;protein ubiquitination;4.42328946711989e-06!GO:0006606;protein import into nucleus;4.68290724850311e-06!GO:0050789;regulation of biological process;4.82632242315918e-06!GO:0045259;proton-transporting ATP synthase complex;4.97095017686331e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.98674319260867e-06!GO:0016310;phosphorylation;5.44235631249507e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.4871820785065e-06!GO:0031988;membrane-bound vesicle;5.58623922830936e-06!GO:0000139;Golgi membrane;6.29231833418435e-06!GO:0051325;interphase;6.59703670178376e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.4401360885461e-06!GO:0016481;negative regulation of transcription;7.85508879206178e-06!GO:0006752;group transfer coenzyme metabolic process;8.52044725824858e-06!GO:0005798;Golgi-associated vesicle;8.7477216174846e-06!GO:0016740;transferase activity;1.14344904329687e-05!GO:0001558;regulation of cell growth;1.14593965352996e-05!GO:0004298;threonine endopeptidase activity;1.14696743651953e-05!GO:0006916;anti-apoptosis;1.16761918764725e-05!GO:0016787;hydrolase activity;1.19771529807958e-05!GO:0006613;cotranslational protein targeting to membrane;1.1988310504689e-05!GO:0009108;coenzyme biosynthetic process;1.26964098000523e-05!GO:0003713;transcription coactivator activity;1.36773553444093e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.39814461768846e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.45600521284456e-05!GO:0043069;negative regulation of programmed cell death;1.56474361428838e-05!GO:0007051;spindle organization and biogenesis;1.61043399684151e-05!GO:0031982;vesicle;1.6915013370513e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.78173750367996e-05!GO:0031410;cytoplasmic vesicle;1.83039093816022e-05!GO:0005762;mitochondrial large ribosomal subunit;1.84592904682717e-05!GO:0000315;organellar large ribosomal subunit;1.84592904682717e-05!GO:0048522;positive regulation of cellular process;2.16197101187592e-05!GO:0032561;guanyl ribonucleotide binding;2.60799028976735e-05!GO:0019001;guanyl nucleotide binding;2.60799028976735e-05!GO:0051789;response to protein stimulus;2.7650603246732e-05!GO:0006986;response to unfolded protein;2.7650603246732e-05!GO:0043066;negative regulation of apoptosis;3.06773401028495e-05!GO:0045454;cell redox homeostasis;3.09101557792157e-05!GO:0008092;cytoskeletal protein binding;3.99166604585524e-05!GO:0005773;vacuole;4.12058571216768e-05!GO:0030867;rough endoplasmic reticulum membrane;4.1404895210254e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.35866239605138e-05!GO:0044440;endosomal part;5.70424301800712e-05!GO:0010008;endosome membrane;5.70424301800712e-05!GO:0005770;late endosome;6.1633385367371e-05!GO:0016563;transcription activator activity;6.18876499179175e-05!GO:0051028;mRNA transport;7.43666532719759e-05!GO:0016779;nucleotidyltransferase activity;7.54282686454673e-05!GO:0030133;transport vesicle;7.54282686454673e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.72715312820772e-05!GO:0003724;RNA helicase activity;7.76983627415511e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.37659098300845e-05!GO:0016853;isomerase activity;9.02673571120838e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.78467973789495e-05!GO:0043021;ribonucleoprotein binding;0.000102579970478953!GO:0000075;cell cycle checkpoint;0.000110083449018448!GO:0051427;hormone receptor binding;0.000114189962391504!GO:0006091;generation of precursor metabolites and energy;0.000120277262462667!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000133210294439349!GO:0000775;chromosome, pericentric region;0.000135716765046002!GO:0016859;cis-trans isomerase activity;0.000135996624768495!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000138656380379146!GO:0030029;actin filament-based process;0.000147079161481076!GO:0043623;cellular protein complex assembly;0.000150530365221484!GO:0019899;enzyme binding;0.000159572613193887!GO:0008654;phospholipid biosynthetic process;0.000160397983264071!GO:0005905;coated pit;0.000180078871995195!GO:0006612;protein targeting to membrane;0.000201843363113608!GO:0000323;lytic vacuole;0.000208914696188048!GO:0005764;lysosome;0.000208914696188048!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000222160284701178!GO:0035257;nuclear hormone receptor binding;0.00023494730092061!GO:0005048;signal sequence binding;0.000239793236203439!GO:0006261;DNA-dependent DNA replication;0.000243914479489615!GO:0005885;Arp2/3 protein complex;0.000251747198635537!GO:0005874;microtubule;0.000270370159686764!GO:0031968;organelle outer membrane;0.000305465728097539!GO:0005769;early endosome;0.000317534917961193!GO:0019867;outer membrane;0.000352693843527437!GO:0051252;regulation of RNA metabolic process;0.000354610583067982!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000374548149291442!GO:0008250;oligosaccharyl transferase complex;0.000399742466252456!GO:0005791;rough endoplasmic reticulum;0.000441413325313288!GO:0030663;COPI coated vesicle membrane;0.00047338521784182!GO:0030126;COPI vesicle coat;0.00047338521784182!GO:0033116;ER-Golgi intermediate compartment membrane;0.000482163885447192!GO:0007050;cell cycle arrest;0.000515452432787513!GO:0019222;regulation of metabolic process;0.000522751440273008!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000595401475170132!GO:0000082;G1/S transition of mitotic cell cycle;0.000595940254649812!GO:0000786;nucleosome;0.00062911017571823!GO:0000314;organellar small ribosomal subunit;0.000646343314273448!GO:0005763;mitochondrial small ribosomal subunit;0.000646343314273448!GO:0003899;DNA-directed RNA polymerase activity;0.00070450986093543!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000709335952184878!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000748379250768885!GO:0051168;nuclear export;0.000752736818800474!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000820363791537073!GO:0004576;oligosaccharyl transferase activity;0.000849587461710618!GO:0030137;COPI-coated vesicle;0.000895477733902376!GO:0000059;protein import into nucleus, docking;0.000984442293908361!GO:0007243;protein kinase cascade;0.00102602161911732!GO:0005741;mitochondrial outer membrane;0.00102859114585859!GO:0018196;peptidyl-asparagine modification;0.00103450710764286!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00103450710764286!GO:0040008;regulation of growth;0.00107561660665853!GO:0045892;negative regulation of transcription, DNA-dependent;0.00108727116118146!GO:0031072;heat shock protein binding;0.00111448577967871!GO:0048471;perinuclear region of cytoplasm;0.00112457187849385!GO:0051920;peroxiredoxin activity;0.00127340498409327!GO:0030027;lamellipodium;0.00132932862368818!GO:0003682;chromatin binding;0.00135464163279968!GO:0003690;double-stranded DNA binding;0.00143300180016558!GO:0006839;mitochondrial transport;0.00156281700260293!GO:0043284;biopolymer biosynthetic process;0.00159491260538194!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0016273453740417!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00175919679206599!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00175919679206599!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00175919679206599!GO:0048518;positive regulation of biological process;0.00179728781852311!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00180526241587992!GO:0015399;primary active transmembrane transporter activity;0.00180526241587992!GO:0003729;mRNA binding;0.00186840268172578!GO:0008186;RNA-dependent ATPase activity;0.00187228706422649!GO:0015631;tubulin binding;0.00187228706422649!GO:0030132;clathrin coat of coated pit;0.00187616942210531!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00190448004985006!GO:0043488;regulation of mRNA stability;0.00198446207046527!GO:0043487;regulation of RNA stability;0.00198446207046527!GO:0000776;kinetochore;0.00199365783097017!GO:0009165;nucleotide biosynthetic process;0.00207527525389811!GO:0016126;sterol biosynthetic process;0.00213003533073757!GO:0019843;rRNA binding;0.00219026172128282!GO:0007052;mitotic spindle organization and biogenesis;0.00230281438813717!GO:0030658;transport vesicle membrane;0.00260726026602322!GO:0042802;identical protein binding;0.0026462341069023!GO:0016363;nuclear matrix;0.00269776989843052!GO:0016044;membrane organization and biogenesis;0.00277471250946823!GO:0043681;protein import into mitochondrion;0.00287003211078716!GO:0048468;cell development;0.00288792422461267!GO:0048500;signal recognition particle;0.00294315029973993!GO:0005657;replication fork;0.00310208422393124!GO:0030134;ER to Golgi transport vesicle;0.00320428834376756!GO:0015992;proton transport;0.00320428834376756!GO:0006891;intra-Golgi vesicle-mediated transport;0.00326549857057592!GO:0065009;regulation of a molecular function;0.00333194853688937!GO:0044262;cellular carbohydrate metabolic process;0.00334033598677461!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00339138333012256!GO:0046483;heterocycle metabolic process;0.00362503495462363!GO:0030118;clathrin coat;0.00369051729388329!GO:0006402;mRNA catabolic process;0.0037211236833895!GO:0017166;vinculin binding;0.00380825229153028!GO:0008094;DNA-dependent ATPase activity;0.00380825229153028!GO:0007088;regulation of mitosis;0.00380825229153028!GO:0006818;hydrogen transport;0.00390217937291721!GO:0007264;small GTPase mediated signal transduction;0.003908047682667!GO:0030127;COPII vesicle coat;0.00391406545465212!GO:0012507;ER to Golgi transport vesicle membrane;0.00391406545465212!GO:0007093;mitotic cell cycle checkpoint;0.00393944455976287!GO:0008047;enzyme activator activity;0.00399118678842425!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00408939239299295!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00409452108497666!GO:0006383;transcription from RNA polymerase III promoter;0.00416027035913564!GO:0065007;biological regulation;0.00418061869695713!GO:0000910;cytokinesis;0.00431952997967229!GO:0006414;translational elongation;0.00435311438998971!GO:0046474;glycerophospholipid biosynthetic process;0.00437871009534841!GO:0006626;protein targeting to mitochondrion;0.00459415157307797!GO:0004004;ATP-dependent RNA helicase activity;0.00471216752279069!GO:0030521;androgen receptor signaling pathway;0.00546679672395083!GO:0008139;nuclear localization sequence binding;0.00560317481014212!GO:0030880;RNA polymerase complex;0.0058154551638378!GO:0006302;double-strand break repair;0.00593811281381598!GO:0003779;actin binding;0.0060349865265564!GO:0008180;signalosome;0.00612428046582669!GO:0030145;manganese ion binding;0.00620011235363717!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00644963491736524!GO:0051128;regulation of cellular component organization and biogenesis;0.00650740230158079!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00669490023983155!GO:0045047;protein targeting to ER;0.00669490023983155!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0067179755104347!GO:0022890;inorganic cation transmembrane transporter activity;0.00680235206415583!GO:0006352;transcription initiation;0.0069283679665657!GO:0003684;damaged DNA binding;0.0069283679665657!GO:0001726;ruffle;0.00703023722305992!GO:0030660;Golgi-associated vesicle membrane;0.00713633082458998!GO:0045941;positive regulation of transcription;0.00720103185420565!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00720103185420565!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00720103185420565!GO:0003746;translation elongation factor activity;0.00720103185420565!GO:0006595;polyamine metabolic process;0.00733020491845361!GO:0051052;regulation of DNA metabolic process;0.00767804916974977!GO:0030659;cytoplasmic vesicle membrane;0.00777848309427635!GO:0048487;beta-tubulin binding;0.00779885484752398!GO:0045893;positive regulation of transcription, DNA-dependent;0.00782887425355208!GO:0006401;RNA catabolic process;0.00793899795464184!GO:0030176;integral to endoplasmic reticulum membrane;0.00794638627762825!GO:0051087;chaperone binding;0.0079474158144423!GO:0005869;dynactin complex;0.00804622398563768!GO:0004674;protein serine/threonine kinase activity;0.00807297032761766!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00816347928795761!GO:0043492;ATPase activity, coupled to movement of substances;0.00819438359001578!GO:0005684;U2-dependent spliceosome;0.00819438359001578!GO:0035258;steroid hormone receptor binding;0.00833084549556424!GO:0019752;carboxylic acid metabolic process;0.00833912814574454!GO:0016197;endosome transport;0.00863411129411781!GO:0007017;microtubule-based process;0.008653651930898!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.008653651930898!GO:0015002;heme-copper terminal oxidase activity;0.008653651930898!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.008653651930898!GO:0004129;cytochrome-c oxidase activity;0.008653651930898!GO:0009967;positive regulation of signal transduction;0.00867224124676137!GO:0008312;7S RNA binding;0.00883713821275753!GO:0045045;secretory pathway;0.00883713821275753!GO:0051287;NAD binding;0.00894384032693677!GO:0031124;mRNA 3'-end processing;0.00895905950741331!GO:0006082;organic acid metabolic process;0.00927856330374225!GO:0008287;protein serine/threonine phosphatase complex;0.00928705958488317!GO:0005862;muscle thin filament tropomyosin;0.00952440697541912!GO:0003678;DNA helicase activity;0.00952440697541912!GO:0007006;mitochondrial membrane organization and biogenesis;0.00952514392783855!GO:0008632;apoptotic program;0.00963065307737266!GO:0006695;cholesterol biosynthetic process;0.00969911092444335!GO:0006310;DNA recombination;0.0102818984911545!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0103450266404269!GO:0046467;membrane lipid biosynthetic process;0.0103837294913196!GO:0004177;aminopeptidase activity;0.0106791020968859!GO:0003711;transcription elongation regulator activity;0.0106984804857235!GO:0006979;response to oxidative stress;0.0110396366033239!GO:0005096;GTPase activator activity;0.0113837117583452!GO:0031529;ruffle organization and biogenesis;0.0116989853641593!GO:0005637;nuclear inner membrane;0.0117322802068937!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0119848610782166!GO:0000428;DNA-directed RNA polymerase complex;0.0119848610782166!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0123180673394351!GO:0032508;DNA duplex unwinding;0.0123810752676278!GO:0032392;DNA geometric change;0.0123810752676278!GO:0043065;positive regulation of apoptosis;0.0124250994982114!GO:0045936;negative regulation of phosphate metabolic process;0.0131904435930091!GO:0043068;positive regulation of programmed cell death;0.0133824082137114!GO:0044433;cytoplasmic vesicle part;0.0134002131340992!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0134209398172333!GO:0043624;cellular protein complex disassembly;0.0136368664380892!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0137351431678286!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0138543706719061!GO:0000049;tRNA binding;0.0140961865038424!GO:0032984;macromolecular complex disassembly;0.0141032826089473!GO:0007346;regulation of progression through mitotic cell cycle;0.0141234502527469!GO:0030032;lamellipodium biogenesis;0.0146294648003188!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0147198051138662!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0148095394072086!GO:0006650;glycerophospholipid metabolic process;0.0148247731378584!GO:0008610;lipid biosynthetic process;0.0151147028167233!GO:0006268;DNA unwinding during replication;0.0157667982173294!GO:0044452;nucleolar part;0.0160385354048159!GO:0006778;porphyrin metabolic process;0.0160925605316084!GO:0033013;tetrapyrrole metabolic process;0.0160925605316084!GO:0006611;protein export from nucleus;0.0161504262188987!GO:0006509;membrane protein ectodomain proteolysis;0.0166210627228916!GO:0033619;membrane protein proteolysis;0.0166210627228916!GO:0016584;nucleosome positioning;0.0166210627228916!GO:0046489;phosphoinositide biosynthetic process;0.0166797928739558!GO:0005876;spindle microtubule;0.0168470050516393!GO:0008154;actin polymerization and/or depolymerization;0.0168473030346758!GO:0050681;androgen receptor binding;0.0172203183126582!GO:0043022;ribosome binding;0.017248322122902!GO:0008286;insulin receptor signaling pathway;0.017248322122902!GO:0030119;AP-type membrane coat adaptor complex;0.018076283791972!GO:0019206;nucleoside kinase activity;0.0185458597204577!GO:0031625;ubiquitin protein ligase binding;0.0185458597204577!GO:0006607;NLS-bearing substrate import into nucleus;0.0185458597204577!GO:0031323;regulation of cellular metabolic process;0.0189286879506393!GO:0000339;RNA cap binding;0.0191237817977087!GO:0004722;protein serine/threonine phosphatase activity;0.019297756496264!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0196148010453513!GO:0005832;chaperonin-containing T-complex;0.0197358842663939!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0199069932201659!GO:0008022;protein C-terminus binding;0.0200220891306169!GO:0006220;pyrimidine nucleotide metabolic process;0.0202190630307316!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0202466394157056!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0202466394157056!GO:0016408;C-acyltransferase activity;0.0206940750246678!GO:0006740;NADPH regeneration;0.0213288619682608!GO:0006098;pentose-phosphate shunt;0.0213288619682608!GO:0000922;spindle pole;0.0216033384235722!GO:0008168;methyltransferase activity;0.0219445747919605!GO:0000287;magnesium ion binding;0.0219445747919605!GO:0031901;early endosome membrane;0.0220844992870086!GO:0016741;transferase activity, transferring one-carbon groups;0.0232976875675675!GO:0022408;negative regulation of cell-cell adhesion;0.0235725569273989!GO:0006354;RNA elongation;0.0242750116374698!GO:0007021;tubulin folding;0.0244029802194742!GO:0030518;steroid hormone receptor signaling pathway;0.0245103996044913!GO:0030125;clathrin vesicle coat;0.0245834610451995!GO:0030665;clathrin coated vesicle membrane;0.0245834610451995!GO:0030833;regulation of actin filament polymerization;0.0248461405801045!GO:0043241;protein complex disassembly;0.0248495638910069!GO:0035035;histone acetyltransferase binding;0.0250979076376396!GO:0019798;procollagen-proline dioxygenase activity;0.0250979076376396!GO:0006520;amino acid metabolic process;0.0251980867489442!GO:0016272;prefoldin complex;0.0255000149412105!GO:0006338;chromatin remodeling;0.0255077954561454!GO:0030041;actin filament polymerization;0.0255579232267665!GO:0012506;vesicle membrane;0.0255579232267665!GO:0042326;negative regulation of phosphorylation;0.0262796628917303!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0265212428454652!GO:0001952;regulation of cell-matrix adhesion;0.0266155304498145!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0267054365309863!GO:0033043;regulation of organelle organization and biogenesis;0.0267054365309863!GO:0045792;negative regulation of cell size;0.0270806518617258!GO:0000792;heterochromatin;0.0276299297634816!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0278749134995818!GO:0008601;protein phosphatase type 2A regulator activity;0.0279414212250081!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0288940711915854!GO:0046426;negative regulation of JAK-STAT cascade;0.0298451778758138!GO:0030131;clathrin adaptor complex;0.0300332268429431!GO:0005669;transcription factor TFIID complex;0.0301756982350754!GO:0018193;peptidyl-amino acid modification;0.0301756982350754!GO:0007059;chromosome segregation;0.0302428173728842!GO:0033559;unsaturated fatty acid metabolic process;0.0302428173728842!GO:0006636;unsaturated fatty acid biosynthetic process;0.0302428173728842!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0303685652902539!GO:0051101;regulation of DNA binding;0.0305356399973343!GO:0006892;post-Golgi vesicle-mediated transport;0.0305356399973343!GO:0031543;peptidyl-proline dioxygenase activity;0.0305356399973343!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0306289258029343!GO:0046519;sphingoid metabolic process;0.0311381070329243!GO:0030308;negative regulation of cell growth;0.0312159221673475!GO:0030508;thiol-disulfide exchange intermediate activity;0.0313077716514127!GO:0007034;vacuolar transport;0.0314832700404326!GO:0007040;lysosome organization and biogenesis;0.0317324190931827!GO:0050662;coenzyme binding;0.0318271716071189!GO:0005581;collagen;0.0320595331943641!GO:0016251;general RNA polymerase II transcription factor activity;0.0322634271868991!GO:0031902;late endosome membrane;0.0324302565871026!GO:0001953;negative regulation of cell-matrix adhesion;0.0326488599878219!GO:0006497;protein amino acid lipidation;0.0327202608901953!GO:0031371;ubiquitin conjugating enzyme complex;0.0327568583623055!GO:0004527;exonuclease activity;0.0328056588049909!GO:0008629;induction of apoptosis by intracellular signals;0.032870628048396!GO:0007030;Golgi organization and biogenesis;0.033006571669728!GO:0006984;ER-nuclear signaling pathway;0.0331455265873224!GO:0033673;negative regulation of kinase activity;0.0338442866276458!GO:0006469;negative regulation of protein kinase activity;0.0338442866276458!GO:0042168;heme metabolic process;0.0338792207554064!GO:0005938;cell cortex;0.0338792207554064!GO:0005801;cis-Golgi network;0.0339329757252893!GO:0043433;negative regulation of transcription factor activity;0.0342246238558317!GO:0000159;protein phosphatase type 2A complex;0.0343316092561638!GO:0033239;negative regulation of amine metabolic process;0.0343316092561638!GO:0045763;negative regulation of amino acid metabolic process;0.0343316092561638!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0343316092561638!GO:0032906;transforming growth factor-beta2 production;0.0345505289239572!GO:0032909;regulation of transforming growth factor-beta2 production;0.0345505289239572!GO:0000209;protein polyubiquitination;0.0348057260679003!GO:0050790;regulation of catalytic activity;0.0349010515711965!GO:0031123;RNA 3'-end processing;0.0353560568616711!GO:0042585;germinal vesicle;0.0356340853716419!GO:0006376;mRNA splice site selection;0.0357502307180083!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0357502307180083!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0359508469608166!GO:0006289;nucleotide-excision repair;0.0361265416777693!GO:0006672;ceramide metabolic process;0.0362665152158579!GO:0051098;regulation of binding;0.0381843140556582!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0383855064792905!GO:0005784;translocon complex;0.0388054264699652!GO:0030911;TPR domain binding;0.0392432077473263!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0400752427556701!GO:0000118;histone deacetylase complex;0.0404666527353117!GO:0007033;vacuole organization and biogenesis;0.0409631777219172!GO:0007569;cell aging;0.0409631777219172!GO:0005583;fibrillar collagen;0.0410556886875909!GO:0035267;NuA4 histone acetyltransferase complex;0.0415935680256406!GO:0006897;endocytosis;0.041730783838601!GO:0010324;membrane invagination;0.041730783838601!GO:0003756;protein disulfide isomerase activity;0.04322346648076!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.04322346648076!GO:0006275;regulation of DNA replication;0.0437145573640749!GO:0048144;fibroblast proliferation;0.0440829666590478!GO:0048145;regulation of fibroblast proliferation;0.0440829666590478!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0441601609077595!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0446875949012605!GO:0006779;porphyrin biosynthetic process;0.0449399028162803!GO:0033014;tetrapyrrole biosynthetic process;0.0449399028162803!GO:0007160;cell-matrix adhesion;0.0449987373644604!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0449987373644604!GO:0031418;L-ascorbic acid binding;0.0449987373644604!GO:0008538;proteasome activator activity;0.045097273287362!GO:0031589;cell-substrate adhesion;0.0452763700218598!GO:0006350;transcription;0.0457502104014334!GO:0004003;ATP-dependent DNA helicase activity;0.0457962585885831!GO:0005520;insulin-like growth factor binding;0.0462307050607037!GO:0051348;negative regulation of transferase activity;0.046908123705831!GO:0006405;RNA export from nucleus;0.0471141441847807!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0471141441847807!GO:0048146;positive regulation of fibroblast proliferation;0.0472712174261879!GO:0043550;regulation of lipid kinase activity;0.0472712174261879!GO:0006790;sulfur metabolic process;0.0481542779309319!GO:0006739;NADP metabolic process;0.0485595262192696!GO:0043189;H4/H2A histone acetyltransferase complex;0.0488122026351069!GO:0042770;DNA damage response, signal transduction;0.0498727519145842 | |||
|sample_id=11223 | |sample_id=11223 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 100: | ||
|sample_tissue=periodontal ligament | |sample_tissue=periodontal ligament | ||
|top_motifs=PDX1:1.533313029;TAL1_TCF{3,4,12}:1.38356625144;PPARG:1.31470001318;NR3C1:1.18310624447;TFAP4:1.17585445476;ZNF238:1.12973292315;GFI1:1.09724675028;TFDP1:1.06949365967;GZF1:1.00086660726;MYBL2:0.973176801433;TFCP2:0.972194719703;NKX3-1:0.953016560088;ZIC1..3:0.948891272274;PAX1,9:0.917776764578;EBF1:0.907973333242;TEAD1:0.90695878266;PAX8:0.875166507646;GLI1..3:0.826628163716;RXR{A,B,G}:0.818502214549;ESR1:0.804928869515;MAZ:0.777822333297;ALX4:0.741848472703;SOX17:0.737207105506;HMGA1,2:0.732633734192;SRF:0.730020295435;CDC5L:0.693435057697;NFATC1..3:0.6913249981;HES1:0.686215891702;TLX1..3_NFIC{dimer}:0.663848717184;NANOG{mouse}:0.649437484418;GTF2A1,2:0.635313370871;TP53:0.629166970465;GATA4:0.619950116257;HAND1,2:0.61965402632;TBX4,5:0.618315531371;MZF1:0.596005698432;GTF2I:0.589411037947;NKX2-3_NKX2-5:0.560094069903;MTE{core}:0.548159790956;FOXL1:0.530007397089;KLF4:0.524342226678;NKX2-2,8:0.517385357656;LHX3,4:0.509841765161;HOX{A5,B5}:0.508416876957;MYB:0.496478772752;GCM1,2:0.491021431603;SPZ1:0.488300688725;PATZ1:0.468050227733;UFEwm:0.466896221914;EVI1:0.46389480074;MAFB:0.454624034161;NFE2L2:0.434978329754;PRDM1:0.427702307835;ADNP_IRX_SIX_ZHX:0.420632083563;TFAP2B:0.409622343853;GFI1B:0.407113636369;XBP1:0.406054654895;NFIX:0.390512090007;FOXA2:0.387228965654;HBP1_HMGB_SSRP1_UBTF:0.384100289697;XCPE1{core}:0.378326321592;ZNF423:0.367120017865;MTF1:0.366712080872;TFAP2{A,C}:0.362533133446;NKX6-1,2:0.357111872643;SMAD1..7,9:0.34467663419;POU3F1..4:0.339589429278;EGR1..3:0.334371301157;EN1,2:0.316824707752;POU5F1:0.308480262326;HIC1:0.287458291364;POU1F1:0.271701619931;ZBTB6:0.268419814816;NKX3-2:0.254815159138;E2F1..5:0.239326912239;SOX5:0.229257908355;ZNF148:0.210990713273;LEF1_TCF7_TCF7L1,2:0.210614627612;BACH2:0.202952257696;ARID5B:0.188613396812;RREB1:0.186967167634;ZFP161:0.17874289668;NFE2L1:0.177007385336;T:0.175737592408;TOPORS:0.172007629849;AHR_ARNT_ARNT2:0.165177101621;HMX1:0.153220093686;SP1:0.148449569124;JUN:0.14621738637;NHLH1,2:0.138784427334;PAX4:0.0954184066512;PAX3,7:0.0901917850792;IRF1,2:0.0810654804638;FOS_FOS{B,L1}_JUN{B,D}:0.0632424088709;MEF2{A,B,C,D}:0.0631349596664;NR1H4:0.0570050646324;HLF:0.0551035360814;PRRX1,2:0.0332526047311;MED-1{core}:0.0309848001668;PAX5:0.0118745748314;NFY{A,B,C}:0.00940242546729;MYFfamily:0.00702788727009;FOXO1,3,4:0.00682865547053;POU6F1:-0.00073601216059;FOSL2:-0.0137543354676;RXRA_VDR{dimer}:-0.0156129029771;RUNX1..3:-0.0285714693213;NFE2:-0.0444697290066;ATF6:-0.0493830682647;HNF1A:-0.0750183998347;HOX{A4,D4}:-0.0779160718314;TBP:-0.101117692283;CREB1:-0.10865302686;YY1:-0.120940668656;NFIL3:-0.122344059436;DMAP1_NCOR{1,2}_SMARC:-0.137021458727;CEBPA,B_DDIT3:-0.138907851376;NR5A1,2:-0.140239213641;DBP:-0.148557781376;FOXD3:-0.151628332447;IKZF1:-0.154648081102;ONECUT1,2:-0.161629486649;NRF1:-0.175176685143;AIRE:-0.183039875062;STAT2,4,6:-0.194138428608;ZNF143:-0.211222178959;TGIF1:-0.232722241933;HOX{A6,A7,B6,B7}:-0.257540505719;NR6A1:-0.267808146277;ELK1,4_GABP{A,B1}:-0.279537990273;STAT5{A,B}:-0.282250825576;RFX1:-0.306411231195;SOX{8,9,10}:-0.308296214806;ZNF384:-0.311509588571;CRX:-0.316181741667;POU2F1..3:-0.320201766314;FOX{F1,F2,J1}:-0.345898926959;SPIB:-0.349329714625;HNF4A_NR2F1,2:-0.352853237807;AR:-0.358238750178;SOX2:-0.362695415337;CUX2:-0.366812970917;HSF1,2:-0.368950796056;BREu{core}:-0.36960842474;NKX2-1,4:-0.371120447643;SREBF1,2:-0.378955454157;GATA6:-0.406628136449;NFKB1_REL_RELA:-0.407055404715;IRF7:-0.415054030864;bHLH_family:-0.417639011963;ELF1,2,4:-0.419550012174;OCT4_SOX2{dimer}:-0.420989851368;REST:-0.423022650304;PITX1..3:-0.436281682941;FOXM1:-0.456100029315;ETS1,2:-0.457866728739;EP300:-0.476866033354;FOX{I1,J2}:-0.488656257879;NANOG:-0.501419050041;RBPJ:-0.517739719163;SPI1:-0.525648596065;VSX1,2:-0.531900998368;ATF5_CREB3:-0.544451140301;RORA:-0.551833612772;RFX2..5_RFXANK_RFXAP:-0.576370241978;FOX{D1,D2}:-0.576510528373;ESRRA:-0.577332439336;ALX1:-0.587115817403;PAX6:-0.606631671066;PBX1:-0.619535456302;IKZF2:-0.641218308761;FOXN1:-0.647734655253;FOXP1:-0.651134588808;PAX2:-0.726444524397;BPTF:-0.765919661361;FOXQ1:-0.806520029535;LMO2:-0.81682660555;STAT1,3:-0.823327120951;ATF4:-0.833613859373;SNAI1..3:-0.859249797235;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.870292502479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.954073312245;HOXA9_MEIS1:-0.96761014699;ZEB1:-0.999540650662;ATF2:-1.01917339298;MYOD1:-1.05707992217;ZBTB16:-1.07122229716;TLX2:-1.0957319341;HIF1A:-1.10291775536;CDX1,2,4:-1.13509549984;TEF:-1.23827556732;FOXP3:-1.38407570635 | |top_motifs=PDX1:1.533313029;TAL1_TCF{3,4,12}:1.38356625144;PPARG:1.31470001318;NR3C1:1.18310624447;TFAP4:1.17585445476;ZNF238:1.12973292315;GFI1:1.09724675028;TFDP1:1.06949365967;GZF1:1.00086660726;MYBL2:0.973176801433;TFCP2:0.972194719703;NKX3-1:0.953016560088;ZIC1..3:0.948891272274;PAX1,9:0.917776764578;EBF1:0.907973333242;TEAD1:0.90695878266;PAX8:0.875166507646;GLI1..3:0.826628163716;RXR{A,B,G}:0.818502214549;ESR1:0.804928869515;MAZ:0.777822333297;ALX4:0.741848472703;SOX17:0.737207105506;HMGA1,2:0.732633734192;SRF:0.730020295435;CDC5L:0.693435057697;NFATC1..3:0.6913249981;HES1:0.686215891702;TLX1..3_NFIC{dimer}:0.663848717184;NANOG{mouse}:0.649437484418;GTF2A1,2:0.635313370871;TP53:0.629166970465;GATA4:0.619950116257;HAND1,2:0.61965402632;TBX4,5:0.618315531371;MZF1:0.596005698432;GTF2I:0.589411037947;NKX2-3_NKX2-5:0.560094069903;MTE{core}:0.548159790956;FOXL1:0.530007397089;KLF4:0.524342226678;NKX2-2,8:0.517385357656;LHX3,4:0.509841765161;HOX{A5,B5}:0.508416876957;MYB:0.496478772752;GCM1,2:0.491021431603;SPZ1:0.488300688725;PATZ1:0.468050227733;UFEwm:0.466896221914;EVI1:0.46389480074;MAFB:0.454624034161;NFE2L2:0.434978329754;PRDM1:0.427702307835;ADNP_IRX_SIX_ZHX:0.420632083563;TFAP2B:0.409622343853;GFI1B:0.407113636369;XBP1:0.406054654895;NFIX:0.390512090007;FOXA2:0.387228965654;HBP1_HMGB_SSRP1_UBTF:0.384100289697;XCPE1{core}:0.378326321592;ZNF423:0.367120017865;MTF1:0.366712080872;TFAP2{A,C}:0.362533133446;NKX6-1,2:0.357111872643;SMAD1..7,9:0.34467663419;POU3F1..4:0.339589429278;EGR1..3:0.334371301157;EN1,2:0.316824707752;POU5F1:0.308480262326;HIC1:0.287458291364;POU1F1:0.271701619931;ZBTB6:0.268419814816;NKX3-2:0.254815159138;E2F1..5:0.239326912239;SOX5:0.229257908355;ZNF148:0.210990713273;LEF1_TCF7_TCF7L1,2:0.210614627612;BACH2:0.202952257696;ARID5B:0.188613396812;RREB1:0.186967167634;ZFP161:0.17874289668;NFE2L1:0.177007385336;T:0.175737592408;TOPORS:0.172007629849;AHR_ARNT_ARNT2:0.165177101621;HMX1:0.153220093686;SP1:0.148449569124;JUN:0.14621738637;NHLH1,2:0.138784427334;PAX4:0.0954184066512;PAX3,7:0.0901917850792;IRF1,2:0.0810654804638;FOS_FOS{B,L1}_JUN{B,D}:0.0632424088709;MEF2{A,B,C,D}:0.0631349596664;NR1H4:0.0570050646324;HLF:0.0551035360814;PRRX1,2:0.0332526047311;MED-1{core}:0.0309848001668;PAX5:0.0118745748314;NFY{A,B,C}:0.00940242546729;MYFfamily:0.00702788727009;FOXO1,3,4:0.00682865547053;POU6F1:-0.00073601216059;FOSL2:-0.0137543354676;RXRA_VDR{dimer}:-0.0156129029771;RUNX1..3:-0.0285714693213;NFE2:-0.0444697290066;ATF6:-0.0493830682647;HNF1A:-0.0750183998347;HOX{A4,D4}:-0.0779160718314;TBP:-0.101117692283;CREB1:-0.10865302686;YY1:-0.120940668656;NFIL3:-0.122344059436;DMAP1_NCOR{1,2}_SMARC:-0.137021458727;CEBPA,B_DDIT3:-0.138907851376;NR5A1,2:-0.140239213641;DBP:-0.148557781376;FOXD3:-0.151628332447;IKZF1:-0.154648081102;ONECUT1,2:-0.161629486649;NRF1:-0.175176685143;AIRE:-0.183039875062;STAT2,4,6:-0.194138428608;ZNF143:-0.211222178959;TGIF1:-0.232722241933;HOX{A6,A7,B6,B7}:-0.257540505719;NR6A1:-0.267808146277;ELK1,4_GABP{A,B1}:-0.279537990273;STAT5{A,B}:-0.282250825576;RFX1:-0.306411231195;SOX{8,9,10}:-0.308296214806;ZNF384:-0.311509588571;CRX:-0.316181741667;POU2F1..3:-0.320201766314;FOX{F1,F2,J1}:-0.345898926959;SPIB:-0.349329714625;HNF4A_NR2F1,2:-0.352853237807;AR:-0.358238750178;SOX2:-0.362695415337;CUX2:-0.366812970917;HSF1,2:-0.368950796056;BREu{core}:-0.36960842474;NKX2-1,4:-0.371120447643;SREBF1,2:-0.378955454157;GATA6:-0.406628136449;NFKB1_REL_RELA:-0.407055404715;IRF7:-0.415054030864;bHLH_family:-0.417639011963;ELF1,2,4:-0.419550012174;OCT4_SOX2{dimer}:-0.420989851368;REST:-0.423022650304;PITX1..3:-0.436281682941;FOXM1:-0.456100029315;ETS1,2:-0.457866728739;EP300:-0.476866033354;FOX{I1,J2}:-0.488656257879;NANOG:-0.501419050041;RBPJ:-0.517739719163;SPI1:-0.525648596065;VSX1,2:-0.531900998368;ATF5_CREB3:-0.544451140301;RORA:-0.551833612772;RFX2..5_RFXANK_RFXAP:-0.576370241978;FOX{D1,D2}:-0.576510528373;ESRRA:-0.577332439336;ALX1:-0.587115817403;PAX6:-0.606631671066;PBX1:-0.619535456302;IKZF2:-0.641218308761;FOXN1:-0.647734655253;FOXP1:-0.651134588808;PAX2:-0.726444524397;BPTF:-0.765919661361;FOXQ1:-0.806520029535;LMO2:-0.81682660555;STAT1,3:-0.823327120951;ATF4:-0.833613859373;SNAI1..3:-0.859249797235;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.870292502479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.954073312245;HOXA9_MEIS1:-0.96761014699;ZEB1:-0.999540650662;ATF2:-1.01917339298;MYOD1:-1.05707992217;ZBTB16:-1.07122229716;TLX2:-1.0957319341;HIF1A:-1.10291775536;CDX1,2,4:-1.13509549984;TEF:-1.23827556732;FOXP3:-1.38407570635 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11223-116B8;search_select_hide=table117:FF:11223-116B8 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor4 (PL29) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12493 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12493
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12493
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.241 |
| 10 | 10 | 0.196 |
| 100 | 100 | 0.153 |
| 101 | 101 | 0.298 |
| 102 | 102 | 0.0212 |
| 103 | 103 | 0.878 |
| 104 | 104 | 0.546 |
| 105 | 105 | 0.702 |
| 106 | 106 | 0.872 |
| 107 | 107 | 0.079 |
| 108 | 108 | 0.633 |
| 109 | 109 | 0.603 |
| 11 | 11 | 0.706 |
| 110 | 110 | 0.495 |
| 111 | 111 | 0.297 |
| 112 | 112 | 0.745 |
| 113 | 113 | 0.472 |
| 114 | 114 | 0.333 |
| 115 | 115 | 0.559 |
| 116 | 116 | 0.457 |
| 117 | 117 | 0.0291 |
| 118 | 118 | 0.0686 |
| 119 | 119 | 0.518 |
| 12 | 12 | 0.322 |
| 120 | 120 | 0.479 |
| 121 | 121 | 0.764 |
| 122 | 122 | 0.067 |
| 123 | 123 | 0.0101 |
| 124 | 124 | 0.713 |
| 125 | 125 | 0.942 |
| 126 | 126 | 0.157 |
| 127 | 127 | 0.834 |
| 128 | 128 | 0.193 |
| 129 | 129 | 0.567 |
| 13 | 13 | 0.0348 |
| 130 | 130 | 0.134 |
| 131 | 131 | 0.963 |
| 132 | 132 | 0.576 |
| 133 | 133 | 0.612 |
| 134 | 134 | 0.0389 |
| 135 | 135 | 0.912 |
| 136 | 136 | 0.86 |
| 137 | 137 | 0.593 |
| 138 | 138 | 0.463 |
| 139 | 139 | 0.00324 |
| 14 | 14 | 0.221 |
| 140 | 140 | 0.907 |
| 141 | 141 | 0.0159 |
| 142 | 142 | 0.658 |
| 143 | 143 | 0.639 |
| 144 | 144 | 0.981 |
| 145 | 145 | 0.781 |
| 146 | 146 | 0.631 |
| 147 | 147 | 0.246 |
| 148 | 148 | 0.402 |
| 149 | 149 | 0.488 |
| 15 | 15 | 0.239 |
| 150 | 150 | 0.461 |
| 151 | 151 | 0.57 |
| 152 | 152 | 0.0593 |
| 153 | 153 | 0.995 |
| 154 | 154 | 0.663 |
| 155 | 155 | 6.96266e-4 |
| 156 | 156 | 0.906 |
| 157 | 157 | 0.0605 |
| 158 | 158 | 0.00783 |
| 159 | 159 | 0.463 |
| 16 | 16 | 0.662 |
| 160 | 160 | 0.853 |
| 161 | 161 | 0.359 |
| 162 | 162 | 0.12 |
| 163 | 163 | 0.64 |
| 164 | 164 | 0.0232 |
| 165 | 165 | 0.176 |
| 166 | 166 | 0.0454 |
| 167 | 167 | 0.375 |
| 168 | 168 | 0.406 |
| 169 | 169 | 0.594 |
| 17 | 17 | 0.916 |
| 18 | 18 | 0.365 |
| 19 | 19 | 0.248 |
| 2 | 2 | 0.236 |
| 20 | 20 | 0.154 |
| 21 | 21 | 0.839 |
| 22 | 22 | 0.608 |
| 23 | 23 | 0.304 |
| 24 | 24 | 0.557 |
| 25 | 25 | 0.328 |
| 26 | 26 | 0.624 |
| 27 | 27 | 0.733 |
| 28 | 28 | 0.188 |
| 29 | 29 | 0.0353 |
| 3 | 3 | 0.335 |
| 30 | 30 | 0.147 |
| 31 | 31 | 0.974 |
| 32 | 32 | 3.1588e-7 |
| 33 | 33 | 0.94 |
| 34 | 34 | 0.966 |
| 35 | 35 | 0.197 |
| 36 | 36 | 0.048 |
| 37 | 37 | 0.633 |
| 38 | 38 | 0.218 |
| 39 | 39 | 0.924 |
| 4 | 4 | 0.85 |
| 40 | 40 | 0.164 |
| 41 | 41 | 0.766 |
| 42 | 42 | 0.476 |
| 43 | 43 | 0.443 |
| 44 | 44 | 0.222 |
| 45 | 45 | 0.844 |
| 46 | 46 | 0.973 |
| 47 | 47 | 0.191 |
| 48 | 48 | 0.45 |
| 49 | 49 | 0.255 |
| 5 | 5 | 0.899 |
| 50 | 50 | 0.772 |
| 51 | 51 | 0.985 |
| 52 | 52 | 0.615 |
| 53 | 53 | 0.462 |
| 54 | 54 | 0.948 |
| 55 | 55 | 0.608 |
| 56 | 56 | 0.897 |
| 57 | 57 | 0.915 |
| 58 | 58 | 0.229 |
| 59 | 59 | 0.402 |
| 6 | 6 | 0.689 |
| 60 | 60 | 0.575 |
| 61 | 61 | 0.58 |
| 62 | 62 | 0.58 |
| 63 | 63 | 0.9 |
| 64 | 64 | 0.166 |
| 65 | 65 | 0.901 |
| 66 | 66 | 0.222 |
| 67 | 67 | 0.298 |
| 68 | 68 | 0.214 |
| 69 | 69 | 0.864 |
| 7 | 7 | 0.141 |
| 70 | 70 | 0.35 |
| 71 | 71 | 0.307 |
| 72 | 72 | 0.199 |
| 73 | 73 | 0.614 |
| 74 | 74 | 0.41 |
| 75 | 75 | 0.167 |
| 76 | 76 | 0.0968 |
| 77 | 77 | 0.321 |
| 78 | 78 | 0.0726 |
| 79 | 79 | 0.016 |
| 8 | 8 | 0.959 |
| 80 | 80 | 0.998 |
| 81 | 81 | 0.638 |
| 82 | 82 | 0.529 |
| 83 | 83 | 0.277 |
| 84 | 84 | 0.689 |
| 85 | 85 | 0.42 |
| 86 | 86 | 0.558 |
| 87 | 87 | 0.446 |
| 88 | 88 | 0.532 |
| 89 | 89 | 0.15 |
| 9 | 9 | 0.333 |
| 90 | 90 | 0.513 |
| 91 | 91 | 0.695 |
| 92 | 92 | 0.498 |
| 93 | 93 | 0.813 |
| 94 | 94 | 0.738 |
| 95 | 95 | 0.753 |
| 96 | 96 | 0.53 |
| 97 | 97 | 0.428 |
| 98 | 98 | 0.037 |
| 99 | 99 | 0.00183 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12493
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
