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(Created page with "{{f5samples |id=FF:11237-116D4 |name=Fibroblast - Gingival, donor1 |sample_id=11237 |rna_tube_id=116D4 |rna_box=116 |rna_position=D4 |sample_cell_lot=N/A |sample_cell_...")
 
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{{f5samples
{{f5samples
|id=FF:11237-116D4
|DRA_sample_Accession=CAGE@SAMD00005461
|name=Fibroblast - Gingival, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005461
|sample_id=11237
|accession_numbers=CAGE;DRX008260;DRR009132;DRZ000557;DRZ001942;DRZ011907;DRZ013292
|rna_tube_id=116D4
|accession_numbers_RNASeq=sRNA-Seq;DRX037014;DRR041380;DRZ007022
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|rna_position=D4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=428.00000
|rna_catalog_number=SC2625
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=gum
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.42100
|sample_note=
|profile_hcage=CNhs10866,LSID702,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10003,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002552
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0001828,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0004111,UBERON:0004119,UBERON:0005423,UBERON:0007026
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.00!112.08!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.72!84.11!TCF12;;chr6:34204921..34204939,+!p3@HMGA1!1.62!1141.22!HMGA1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.67!TFAP2C;;chr9:77112244..77112262,+!p1@RORB!1.54!37.56!RORB;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.10!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.49!29.60!SIX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!83.09!TWIST2;;chr14:37131058..37131139,+!p1@PAX9!1.43!25.93!PAX9;;chr16:86544113..86544145,+!p1@FOXF1!1.39!28.99!FOXF1;;chr2:19558373..19558392,-!p1@OSR1!1.36!59.41!OSR1;;chr14:61116183..61116208,-!p1@SIX1!1.35!79.42!SIX1;;chr9:96717629..96717644,-!p1@BARX1!1.35!21.23!BARX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.34!25.32!ZBTB38;;chr1:170632250..170632277,+!p7@PRRX1!1.31!19.60!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.29!32.46!ZFP106;;chr12:115122318..115122331,-!p2@TBX3!1.28!18.17!TBX3;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.96!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.40!TWIST2;;chr9:132427883..132427951,+!p2@PRRX2!1.24!16.33!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.46!CREB3L1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.22!16.54!GLIS1;;chr7:14029283..14029311,-!p1@ETV1!1.17!72.88!ETV1;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.07!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.70!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!1.13!56.75!TOX2;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.33!PRRX2;;chr12:66218598..66218645,+!p2@HMGA2!1.12!56.14!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.10!15.92!FOXF2;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.45!PPARG;;chr3:141121847..141121868,+!p5@ZBTB38!1.06!16.13!ZBTB38;;chr2:102091144..102091183,-!p2@RFX8!1.06!10.41!RFX8;;chr3:157823517..157823562,-!p1@SHOX2!1.05!11.02!SHOX2;;chr2:102091566..102091581,-!p1@RFX8!1.04!10.00!RFX8;;chr2:45236579..45236596,-!p2@SIX2!1.03!9.60!SIX2;;chr15:57511589..57511608,+!p4@TCF12!1.02!9.39!TCF12;;chr17:59477233..59477263,+!p1@TBX2!0.97!26.74!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.45!NFIX;;chr14:37126765..37126799,+!p2@PAX9!0.96!8.17!PAX9;;chr12:66218255..66218304,+!p3@HMGA2!0.95!21.64!HMGA2;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.78!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.96!KDM5D;;chr11:65667884..65667895,-!p2@FOSL1!0.94!30.83!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!0.93!13.27!DRAP1;;chr2:96012397..96012417,+!p3@KCNIP3!0.93!7.55!KCNIP3;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr12:115122303..115122314,-!p6@TBX3!0.91!7.15!TBX3;;chr18:52969844..52969895,-!p27@TCF4!0.91!7.15!TCF4;;chr4:4861385..4861398,+!p1@MSX1!0.90!21.44!MSX1;;chr6:85474299..85474324,-!p1@TBX18!0.90!12.66!TBX18;;chr12:115121770..115121781,-!p4@TBX3!0.90!6.94!TBX3;;chr7:44143925..44143970,+!p1@AEBP1!0.89!157.81!AEBP1;;chr12:66218836..66218888,+!p1@HMGA2!0.89!65.94!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.89!17.15!PPARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.89!6.74!KCNIP3;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.17!TBX18;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.53!PRRX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.88!6.53!POU3F3;;chr5:92918919..92918942,+!p1@NR2F1!0.87!30.42!NR2F1;;chr7:19157043..19157088,-!p2@TWIST1!0.87!16.94!TWIST1;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.33!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.33!ZFY;;chr20:39946361..39946379,-!p2@ZHX3!0.85!19.19!ZHX3;;chrX:66763856..66763896,+!p1@AR!0.85!8.98!AR;;chr7:14029312..14029325,-!p4@ETV1!0.85!7.55!ETV1;;chr7:14028488..14028516,-!p2@ETV1!0.85!6.74!ETV1;;chr20:55205825..55205847,+!p2@TFAP2C!0.85!6.12!TFAP2C;;chr12:115121802..115121814,-!p5@TBX3!0.84!5.92!TBX3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.92!RUNX1T1;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.72!PRRX1;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.72!FOXC2;;chr12:115121962..115121987,-!p1@TBX3!0.82!51.04!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.81!31.64!RARG;;chr10:28034739..28034756,-!p1@MKX!0.81!5.51!MKX;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.51!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.80!5.31!PAX3;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.70!DRAP1;;chr19:13134457..13134462,+!p5@NFIX!0.78!9.39!NFIX;;chr2:96012353..96012378,+!p4@KCNIP3!0.77!4.90!KCNIP3;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.90!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.85!FOSL1;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.31!NR2F1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.76!4.70!RUNX1T1;;chr3:141121820..141121838,+!p9@ZBTB38!0.76!4.70!ZBTB38;;chr17:7492684..7492778,-!p2@SOX15!0.75!10.41!SOX15;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.17!CREB3L1;;chr3:141087393..141087426,+!p3@ZBTB38!0.74!19.60!ZBTB38;;chr12:85673977..85674015,+!p1@ALX1!0.74!4.49!ALX1;;chr1:75600067..75600094,+!p2@LHX8!0.74!4.49!LHX8;;chr5:321810..321877,+!p1@AHRR!0.73!15.31!AHRR;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.84!EBF1;;chr18:52989031..52989079,-!p2@TCF4!0.73!11.02!TCF4;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.80!DRAP1;;chr8:116673894..116673913,-!p12@TRPS1!0.72!4.29!TRPS1;;chr1:170632310..170632321,+!p15@PRRX1!0.72!4.29!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!533.25!HMGA1;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.72!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.71!5.10!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.08!HMGA2;;chr18:52969674..52969685,-!p24@TCF4!0.71!4.08!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.70!6.53!ETV4;;chrX:66763815..66763854,+!p2@AR!0.70!5.51!AR;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.92!ZBTB16;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.88!FOXF2;;chr2:172949484..172949522,+!p1@DLX1!0.69!3.88!DLX1;;chr12:66218183..66218209,+!p4@HMGA2!0.68!7.96!HMGA2;;chr1:25256756..25256774,-!p1@RUNX3!0.68!7.76!RUNX3;;chr19:53496768..53496799,-!p1@ZNF702P!0.68!6.33!ZNF702P;;chr12:66218212..66218244,+!p5@HMGA2!0.67!5.72!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.10!TBX2;;chr2:172950227..172950249,+!p2@DLX1!0.67!3.67!DLX1;;chr6:134210243..134210257,+!p1@TCF21!0.67!3.67!TCF21;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.67!HMGA2;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.87!ZBTB38;;chr10:31607702..31607755,+!p3@ZEB1!0.66!4.29!ZEB1;;chr12:96588143..96588185,+!p1@ELK3!0.65!49.41!ELK3;;chr20:42543506..42543549,+!p2@TOX2!0.65!9.19!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.64!7.96!SATB2;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!5.92!ZBTB16;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.75!HIF1A;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.10!SATB2;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.27!CREB3L1;;chr12:115122262..115122271,-!p7@TBX3!0.63!3.27!TBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.61!11.64!NR2F1;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.76!NR4A3;;chr12:66218573..66218596,+!p7@HMGA2!0.61!4.90!HMGA2;;chr6:34204973..34204990,+!p4@HMGA1!0.60!48.59!HMGA1;;chr7:17338266..17338282,+!p1@AHR!0.60!38.59!AHR;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.30!IFI16;;chr14:61116168..61116180,-!p2@SIX1!0.60!3.47!SIX1;;chr12:96588219..96588263,+!p2@ELK3!0.59!24.91!ELK3;;chr5:124082322..124082364,-!p1@ZNF608!0.59!8.57!ZNF608;;chr1:170632439..170632465,+!p11@PRRX1!0.59!2.86!PRRX1;;chr14:73360799..73360817,-!p1@DPF3!0.58!11.43!DPF3;;chr11:47279504..47279563,+!p1@NR1H3!0.58!7.35!NR1H3;;chr7:17338239..17338262,+!p2@AHR!0.57!24.91!AHR;;chr9:2158443..2158481,+!p2@SMARCA2!0.57!8.98!SMARCA2;;chr12:24715376..24715432,-!p1@SOX5!0.57!3.67!SOX5;;chr8:128748308..128748324,+!p2@MYC!0.56!92.07!MYC;;chr5:34929947..34930005,+!p3@DNAJC21!0.56!8.98!DNAJC21;;chr9:102584159..102584174,+!p2@NR4A3!0.56!5.31!NR4A3;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.10!FOXP2;;chr6:50786591..50786614,+!p1@TFAP2B!0.56!2.65!TFAP2B;;chr3:141121871..141121885,+!p13@ZBTB38!0.56!2.65!ZBTB38;;chr9:96717678..96717689,-!p2@BARX1!0.56!2.65!BARX1;;chr11:65687158..65687216,+!p4@DRAP1!0.55!18.17!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.55!3.47!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!0.54!16.13!HIF1A;;chr14:24837368..24837401,+!p1@NFATC4!0.54!6.74!NFATC4;;chr11:46299186..46299195,+!p3@CREB3L1!0.54!2.86!CREB3L1;;chr10:31607811..31607837,+!p6@ZEB1!0.54!2.45!ZEB1;;chr6:1389824..1389840,+!p3@FOXF2!0.54!2.45!FOXF2;;chr8:25902876..25902936,-!p1@EBF2!0.54!2.45!EBF2;;chr1:170633245..170633256,+!p14@PRRX1!0.54!2.45!PRRX1;;chr1:200008734..200008765,+!p2@NR5A2!0.54!2.45!NR5A2;;chr9:77112225..77112238,+!p2@RORB!0.54!2.45!RORB;;chr3:12329339..12329356,+!p5@PPARG!0.54!2.45!PPARG;;chr17:17726907..17726958,-!p2@SREBF1!0.53!18.58!SREBF1;;chr9:16870710..16870763,-!p1@BNC2!0.53!4.70!BNC2;;chr11:707063..707088,-!p4@DEAF1!0.53!3.27!DEAF1;;chr9:16870659..16870675,-!p2@BNC2!0.53!3.06!BNC2;;chr10:31608127..31608156,+!p1@ZEB1!0.52!54.92!ZEB1;;chr8:49833948..49833973,-!p2@SNAI2!0.52!18.58!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.52!4.49!TBX2;;chr15:37390482..37390572,-!p7@MEIS2!0.52!3.47!MEIS2;;chr8:116681194..116681214,-!p1@TRPS1!0.51!26.95!TRPS1;;chr21:47063625..47063658,+!p1@PCBP3!0.51!12.45!PCBP3;;chr17:41623009..41623053,-!p4@ETV4!0.51!4.08!ETV4;;chr15:67391010..67391046,+!p13@SMAD3!0.51!2.25!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.51!2.25!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.51!2.25!ETV4;;chr19:13136057..13136085,+!p11@NFIX!0.51!2.25!NFIX;;chr14:37126814..37126834,+!p4@PAX9!0.51!2.25!PAX9;;chr1:158969727..158969749,+!p11@IFI16!0.51!2.25!IFI16;;chr1:44513995..44514031,+!p1@KLF17!0.51!2.25!KLF17;;chr8:49833978..49833996,-!p1@SNAI2!0.50!58.80!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.50!11.64!ZFHX4;;chr20:39946400..39946423,-!p3@ZHX3!0.50!4.70!ZHX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.50!2.86!TFAP2A;;chr6:155635583..155635644,-!p1@TFB1M!0.49!36.14!TFB1M;;chr5:43067636..43067674,+!p6@ZNF131!0.49!3.06!ZNF131;;chr3:114343768..114343822,-!p1@ZBTB20!0.48!11.43!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.48!4.90!ZBTB20;;chr5:178368186..178368238,+!p1@ZNF454!0.48!4.29!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.48!3.88!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!0.48!2.45!BNC1;;chr19:9609272..9609297,-!p1@ZNF560!0.48!2.04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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor1.CNhs10866.11237-116D4.hg38.nobarcode.ctss.bed.gz
|id=FF:11237-116D4
|is_a=EFO:0002091;;FF:0000063
|is_obsolete=
|library_id=CNhs10866
|library_id_phase_based=2:CNhs10866
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11237
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.ACAGTG.11237
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11237
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.ACAGTG.11237
|name=Fibroblast - Gingival, donor1
|namespace=FANTOM5
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|profile_hcage=CNhs10866,LSID702,release008,COMPLETED
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|rna_box=116
|rna_catalog_number=SC2625
|rna_concentration=0.421
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=428
|rna_od260/230=
|rna_od260/280=
|rna_position=D4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116D4
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.ACAGTG
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.91906091183124e-239!GO:0005737;cytoplasm;6.617037753904e-195!GO:0043226;organelle;4.12348848601339e-185!GO:0043229;intracellular organelle;8.24509300401785e-185!GO:0043231;intracellular membrane-bound organelle;1.51691939102831e-184!GO:0043227;membrane-bound organelle;3.3303439479012e-184!GO:0044444;cytoplasmic part;2.24928682722051e-142!GO:0044422;organelle part;1.34867545205412e-140!GO:0044446;intracellular organelle part;3.83017917701599e-139!GO:0032991;macromolecular complex;2.18984048804219e-93!GO:0044238;primary metabolic process;2.42637990570202e-90!GO:0044237;cellular metabolic process;9.98305839261685e-90!GO:0030529;ribonucleoprotein complex;1.23177964840716e-85!GO:0043170;macromolecule metabolic process;2.38722026326439e-78!GO:0043233;organelle lumen;6.0730226516183e-73!GO:0031974;membrane-enclosed lumen;6.0730226516183e-73!GO:0003723;RNA binding;7.90897892815885e-71!GO:0005739;mitochondrion;9.17235703321785e-70!GO:0044428;nuclear part;2.74268470021138e-69!GO:0005634;nucleus;1.65892785991546e-67!GO:0005515;protein binding;4.32146397644481e-66!GO:0031090;organelle membrane;9.50102793630408e-54!GO:0005840;ribosome;3.54295155529146e-53!GO:0019538;protein metabolic process;8.90179368357812e-51!GO:0006412;translation;8.88231471428395e-49!GO:0016043;cellular component organization and biogenesis;1.27638832471906e-47!GO:0006396;RNA processing;2.71398499769034e-47!GO:0044429;mitochondrial part;5.55637436092666e-47!GO:0003735;structural constituent of ribosome;4.13901637112731e-46!GO:0043234;protein complex;7.05937442407346e-46!GO:0033036;macromolecule localization;1.00785436700354e-45!GO:0015031;protein transport;2.21476555655489e-45!GO:0009058;biosynthetic process;2.71115211836159e-45!GO:0044260;cellular macromolecule metabolic process;4.29360938375101e-45!GO:0044267;cellular protein metabolic process;1.80878145685818e-44!GO:0031981;nuclear lumen;2.94997256935826e-42!GO:0045184;establishment of protein localization;5.73399838363238e-42!GO:0008104;protein localization;8.62642505567474e-42!GO:0005829;cytosol;1.48658190575573e-41!GO:0043283;biopolymer metabolic process;2.44798872866932e-41!GO:0031967;organelle envelope;4.70262038761676e-41!GO:0031975;envelope;1.17900224141079e-40!GO:0009059;macromolecule biosynthetic process;5.86949478606824e-40!GO:0033279;ribosomal subunit;1.09590279376792e-39!GO:0044249;cellular biosynthetic process;1.14161844233525e-39!GO:0010467;gene expression;1.14085162421669e-38!GO:0016071;mRNA metabolic process;2.40677272884582e-37!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.45545766754058e-35!GO:0008380;RNA splicing;1.11956860137386e-34!GO:0046907;intracellular transport;2.72355147384045e-34!GO:0065003;macromolecular complex assembly;5.41401861287839e-32!GO:0006397;mRNA processing;9.35362829778772e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11342047290072e-30!GO:0005740;mitochondrial envelope;6.47431001507616e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.92025318445446e-30!GO:0006886;intracellular protein transport;1.88077364283493e-29!GO:0043228;non-membrane-bound organelle;4.08008597979241e-29!GO:0043232;intracellular non-membrane-bound organelle;4.08008597979241e-29!GO:0006996;organelle organization and biogenesis;2.18274211868035e-28!GO:0022607;cellular component assembly;2.65705871431627e-28!GO:0031966;mitochondrial membrane;2.84521408482012e-28!GO:0019866;organelle inner membrane;1.05927998504277e-26!GO:0005654;nucleoplasm;3.06072557742397e-26!GO:0005743;mitochondrial inner membrane;2.82826450803202e-25!GO:0044445;cytosolic part;7.48692110238197e-24!GO:0005681;spliceosome;1.16699805188267e-23!GO:0051641;cellular localization;4.78029933079333e-23!GO:0051649;establishment of cellular localization;5.8117488054013e-23!GO:0000166;nucleotide binding;8.12722950523948e-23!GO:0006259;DNA metabolic process;3.55451791819672e-22!GO:0012505;endomembrane system;6.85771471579164e-22!GO:0006119;oxidative phosphorylation;1.11583262944654e-21!GO:0003676;nucleic acid binding;1.41015567248311e-21!GO:0006457;protein folding;2.42920421228102e-21!GO:0044451;nucleoplasm part;4.32958211698048e-21!GO:0031980;mitochondrial lumen;7.36740711759236e-21!GO:0005759;mitochondrial matrix;7.36740711759236e-21!GO:0015935;small ribosomal subunit;8.03460925895047e-21!GO:0016462;pyrophosphatase activity;1.81980745828246e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.97330908247119e-20!GO:0005783;endoplasmic reticulum;2.16103973757168e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.22251075854989e-20!GO:0015934;large ribosomal subunit;7.11784028247421e-20!GO:0017111;nucleoside-triphosphatase activity;1.30445825976848e-19!GO:0022618;protein-RNA complex assembly;2.28744495377933e-19!GO:0044455;mitochondrial membrane part;4.49812147314482e-19!GO:0048770;pigment granule;8.37089027368957e-19!GO:0042470;melanosome;8.37089027368957e-19!GO:0016874;ligase activity;1.87869113598618e-18!GO:0051186;cofactor metabolic process;2.96731329271297e-18!GO:0005730;nucleolus;1.34210825572428e-17!GO:0006512;ubiquitin cycle;1.78081340520056e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.70349520484241e-17!GO:0044432;endoplasmic reticulum part;3.0135865148295e-17!GO:0008135;translation factor activity, nucleic acid binding;3.80941861165821e-17!GO:0043285;biopolymer catabolic process;3.82593242604734e-17!GO:0044265;cellular macromolecule catabolic process;4.96488561233845e-17!GO:0007049;cell cycle;5.09709830845072e-17!GO:0019941;modification-dependent protein catabolic process;5.32093554326927e-17!GO:0043632;modification-dependent macromolecule catabolic process;5.32093554326927e-17!GO:0005794;Golgi apparatus;5.72616647130588e-17!GO:0006511;ubiquitin-dependent protein catabolic process;6.25694478709983e-17!GO:0044257;cellular protein catabolic process;8.98919157566034e-17!GO:0005746;mitochondrial respiratory chain;1.35517725491556e-16!GO:0016070;RNA metabolic process;3.54660255595818e-16!GO:0017076;purine nucleotide binding;3.70665057209112e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.30460130588033e-16!GO:0044248;cellular catabolic process;7.22220467458908e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.22220467458908e-16!GO:0009057;macromolecule catabolic process;1.3688475410992e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.74659782297563e-15!GO:0032553;ribonucleotide binding;2.36487817196819e-15!GO:0032555;purine ribonucleotide binding;2.36487817196819e-15!GO:0030163;protein catabolic process;2.51116561190721e-15!GO:0008134;transcription factor binding;3.09960150472906e-15!GO:0006605;protein targeting;1.03586255156063e-14!GO:0048193;Golgi vesicle transport;1.46283551500436e-14!GO:0005761;mitochondrial ribosome;1.46283551500436e-14!GO:0000313;organellar ribosome;1.46283551500436e-14!GO:0016192;vesicle-mediated transport;2.82175438024878e-14!GO:0006732;coenzyme metabolic process;3.00247565874933e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.21429366054687e-14!GO:0003954;NADH dehydrogenase activity;3.21429366054687e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.21429366054687e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.23255287587989e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.32311453818783e-13!GO:0030554;adenyl nucleotide binding;1.61074231540242e-13!GO:0003743;translation initiation factor activity;1.85615241838999e-13!GO:0006974;response to DNA damage stimulus;1.9141276635751e-13!GO:0005524;ATP binding;3.87281885948054e-13!GO:0051082;unfolded protein binding;5.03271779720894e-13!GO:0022402;cell cycle process;5.18372715110029e-13!GO:0032559;adenyl ribonucleotide binding;7.48718753573116e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.87204037622383e-13!GO:0042773;ATP synthesis coupled electron transport;8.87204037622383e-13!GO:0006413;translational initiation;8.89218218454083e-13!GO:0043412;biopolymer modification;9.13286918976982e-13!GO:0005793;ER-Golgi intermediate compartment;1.00993598315543e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.56331236893748e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.60020112795433e-12!GO:0045271;respiratory chain complex I;1.60020112795433e-12!GO:0005747;mitochondrial respiratory chain complex I;1.60020112795433e-12!GO:0042254;ribosome biogenesis and assembly;1.98266297739948e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.98584459654014e-12!GO:0000375;RNA splicing, via transesterification reactions;1.98584459654014e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.98584459654014e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.01421637619221e-12!GO:0005789;endoplasmic reticulum membrane;4.91609636668487e-12!GO:0005635;nuclear envelope;5.46621665090106e-12!GO:0009055;electron carrier activity;7.52093357127674e-12!GO:0000278;mitotic cell cycle;8.98639267116794e-12!GO:0031965;nuclear membrane;1.19738778670716e-11!GO:0016604;nuclear body;1.42195114894219e-11!GO:0006464;protein modification process;4.11874347247963e-11!GO:0006446;regulation of translational initiation;5.10929943032432e-11!GO:0009259;ribonucleotide metabolic process;7.77342978314177e-11!GO:0006281;DNA repair;8.41860262640369e-11!GO:0044453;nuclear membrane part;9.98785437573123e-11!GO:0006163;purine nucleotide metabolic process;1.14375889962077e-10!GO:0042623;ATPase activity, coupled;1.34608219647836e-10!GO:0016887;ATPase activity;1.35688361461761e-10!GO:0009056;catabolic process;2.4304177870323e-10!GO:0006913;nucleocytoplasmic transport;2.46576635154714e-10!GO:0004386;helicase activity;2.75548837905683e-10!GO:0009150;purine ribonucleotide metabolic process;3.7605949037146e-10!GO:0008639;small protein conjugating enzyme activity;4.52281152670219e-10!GO:0051169;nuclear transport;5.73939402258207e-10!GO:0006399;tRNA metabolic process;6.12558567767336e-10!GO:0009719;response to endogenous stimulus;6.96733068577867e-10!GO:0012501;programmed cell death;7.80948178050573e-10!GO:0006461;protein complex assembly;8.01893655602982e-10!GO:0008565;protein transporter activity;9.07203447229202e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.07203447229202e-10!GO:0004842;ubiquitin-protein ligase activity;9.07203447229202e-10!GO:0006164;purine nucleotide biosynthetic process;1.02730654724016e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.03064892221879e-09!GO:0003712;transcription cofactor activity;1.06395689771372e-09!GO:0051276;chromosome organization and biogenesis;1.13691631882442e-09!GO:0006915;apoptosis;1.15113073956516e-09!GO:0005694;chromosome;1.2749801462966e-09!GO:0019787;small conjugating protein ligase activity;1.85365941935637e-09!GO:0016607;nuclear speck;1.9357759935808e-09!GO:0016491;oxidoreductase activity;1.93619859347352e-09!GO:0009260;ribonucleotide biosynthetic process;2.15207932596222e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.49236690624122e-09!GO:0009060;aerobic respiration;2.7054692671212e-09!GO:0045333;cellular respiration;2.74462505021184e-09!GO:0009141;nucleoside triphosphate metabolic process;3.17116385131205e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.2294001694747e-09!GO:0051188;cofactor biosynthetic process;3.6847693303947e-09!GO:0000087;M phase of mitotic cell cycle;3.7043794047252e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.38493313465538e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.38493313465538e-09!GO:0043687;post-translational protein modification;5.46018740368941e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.46018740368941e-09!GO:0008026;ATP-dependent helicase activity;5.85850162614643e-09!GO:0008219;cell death;6.00973574034294e-09!GO:0016265;death;6.00973574034294e-09!GO:0007067;mitosis;6.355791011475e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.01299241071276e-09!GO:0030120;vesicle coat;1.22846569588335e-08!GO:0030662;coated vesicle membrane;1.22846569588335e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.26541302156361e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.28244347173213e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.28244347173213e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.28244347173213e-08!GO:0005768;endosome;1.29373312707066e-08!GO:0005643;nuclear pore;1.43822829932907e-08!GO:0043038;amino acid activation;1.44902420891478e-08!GO:0006418;tRNA aminoacylation for protein translation;1.44902420891478e-08!GO:0043039;tRNA aminoacylation;1.44902420891478e-08!GO:0051726;regulation of cell cycle;1.57444190339713e-08!GO:0000074;regulation of progression through cell cycle;1.68341164395385e-08!GO:0016881;acid-amino acid ligase activity;1.79391343204369e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.60463033974552e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.68676699849152e-08!GO:0046034;ATP metabolic process;3.08287060236548e-08!GO:0048475;coated membrane;3.09194735001517e-08!GO:0030117;membrane coat;3.09194735001517e-08!GO:0015986;ATP synthesis coupled proton transport;3.12889823693127e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.12889823693127e-08!GO:0065002;intracellular protein transport across a membrane;3.29266802936892e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.36865209897524e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.36865209897524e-08!GO:0051301;cell division;3.45508176955259e-08!GO:0006323;DNA packaging;3.45508176955259e-08!GO:0006403;RNA localization;3.46463205692017e-08!GO:0050657;nucleic acid transport;3.5055764517597e-08!GO:0051236;establishment of RNA localization;3.5055764517597e-08!GO:0050658;RNA transport;3.5055764517597e-08!GO:0019829;cation-transporting ATPase activity;3.59532463972433e-08!GO:0022403;cell cycle phase;3.78322971371394e-08!GO:0048523;negative regulation of cellular process;4.19665903872385e-08!GO:0017038;protein import;5.01141426554128e-08!GO:0044427;chromosomal part;5.01141426554128e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.03401483774157e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.03401483774157e-08!GO:0044431;Golgi apparatus part;6.16568027358521e-08!GO:0006099;tricarboxylic acid cycle;7.49399587687345e-08!GO:0046356;acetyl-CoA catabolic process;7.49399587687345e-08!GO:0006364;rRNA processing;8.12197558119312e-08!GO:0006366;transcription from RNA polymerase II promoter;9.11025535462626e-08!GO:0006260;DNA replication;9.73740980583873e-08!GO:0006091;generation of precursor metabolites and energy;1.06526343118971e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.10470933369377e-07!GO:0051187;cofactor catabolic process;1.19248211063318e-07!GO:0016072;rRNA metabolic process;1.67626206172729e-07!GO:0009109;coenzyme catabolic process;1.728249322447e-07!GO:0003924;GTPase activity;1.77931489257126e-07!GO:0046930;pore complex;1.88045030549496e-07!GO:0005788;endoplasmic reticulum lumen;1.92969929150706e-07!GO:0050794;regulation of cellular process;2.07053349031604e-07!GO:0043566;structure-specific DNA binding;2.08717558891084e-07!GO:0051246;regulation of protein metabolic process;2.23879965594486e-07!GO:0044440;endosomal part;2.41073468873768e-07!GO:0010008;endosome membrane;2.41073468873768e-07!GO:0009108;coenzyme biosynthetic process;2.59600948598478e-07!GO:0006084;acetyl-CoA metabolic process;2.62593708941242e-07!GO:0065004;protein-DNA complex assembly;3.4453911064769e-07!GO:0006754;ATP biosynthetic process;3.98340090313878e-07!GO:0006753;nucleoside phosphate metabolic process;3.98340090313878e-07!GO:0015630;microtubule cytoskeleton;5.83190020983109e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.11779381789981e-07!GO:0009117;nucleotide metabolic process;7.78825858939769e-07!GO:0006916;anti-apoptosis;8.67567264074669e-07!GO:0003697;single-stranded DNA binding;9.88221419568364e-07!GO:0000279;M phase;1.12657997485619e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.33274215417392e-06!GO:0048519;negative regulation of biological process;1.33583546246761e-06!GO:0032446;protein modification by small protein conjugation;1.37717030357756e-06!GO:0016787;hydrolase activity;1.37783225815676e-06!GO:0000151;ubiquitin ligase complex;1.38728716359448e-06!GO:0016853;isomerase activity;1.39914564035335e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.41560527068045e-06!GO:0051028;mRNA transport;1.4253624197582e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.45204358011289e-06!GO:0016740;transferase activity;1.46306191407001e-06!GO:0007005;mitochondrion organization and biogenesis;1.4815335833667e-06!GO:0016859;cis-trans isomerase activity;1.73866459566026e-06!GO:0016567;protein ubiquitination;1.89379952194139e-06!GO:0045259;proton-transporting ATP synthase complex;2.20043647624865e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.27223954523682e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.28182959682174e-06!GO:0031988;membrane-bound vesicle;2.56650171005099e-06!GO:0003713;transcription coactivator activity;2.56873040372864e-06!GO:0006752;group transfer coenzyme metabolic process;2.80309873755096e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.90684389010067e-06!GO:0016779;nucleotidyltransferase activity;3.15883480190307e-06!GO:0008654;phospholipid biosynthetic process;3.19638650901327e-06!GO:0043069;negative regulation of programmed cell death;3.20396969906354e-06!GO:0005798;Golgi-associated vesicle;3.30067261424051e-06!GO:0000245;spliceosome assembly;3.42073381377348e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.47659421027173e-06!GO:0031252;leading edge;3.53430262258764e-06!GO:0043066;negative regulation of apoptosis;3.68143194788704e-06!GO:0042981;regulation of apoptosis;4.2960751081182e-06!GO:0006333;chromatin assembly or disassembly;4.5884546405134e-06!GO:0006613;cotranslational protein targeting to membrane;4.76710834109254e-06!GO:0016126;sterol biosynthetic process;4.78866086066421e-06!GO:0051170;nuclear import;4.87708258051956e-06!GO:0000139;Golgi membrane;5.16021775640263e-06!GO:0005813;centrosome;5.4311566927846e-06!GO:0043067;regulation of programmed cell death;5.7699988966322e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.51259780429608e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.57748380568107e-06!GO:0003724;RNA helicase activity;7.47569735811057e-06!GO:0005773;vacuole;8.52605684880015e-06!GO:0005667;transcription factor complex;9.35666186322889e-06!GO:0031982;vesicle;1.08595045320233e-05!GO:0006606;protein import into nucleus;1.24025114855018e-05!GO:0031410;cytoplasmic vesicle;1.2936731815573e-05!GO:0004298;threonine endopeptidase activity;1.33904435633984e-05!GO:0005770;late endosome;1.4461989060292e-05!GO:0005762;mitochondrial large ribosomal subunit;1.45341382587161e-05!GO:0000315;organellar large ribosomal subunit;1.45341382587161e-05!GO:0016568;chromatin modification;1.55635530274845e-05!GO:0019867;outer membrane;1.63822149634705e-05!GO:0005815;microtubule organizing center;1.8407212071894e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.89047335459314e-05!GO:0000785;chromatin;1.93636380256298e-05!GO:0031968;organelle outer membrane;2.2824706984129e-05!GO:0005525;GTP binding;2.33645809063022e-05!GO:0000323;lytic vacuole;2.79615959487888e-05!GO:0005764;lysosome;2.79615959487888e-05!GO:0045786;negative regulation of progression through cell cycle;3.11433315421801e-05!GO:0005769;early endosome;3.3277043261545e-05!GO:0016563;transcription activator activity;3.42330869847061e-05!GO:0030867;rough endoplasmic reticulum membrane;3.6078958241569e-05!GO:0019899;enzyme binding;3.64372977435368e-05!GO:0006793;phosphorus metabolic process;3.64872964277414e-05!GO:0006796;phosphate metabolic process;3.64872964277414e-05!GO:0008610;lipid biosynthetic process;3.75143582145306e-05!GO:0043021;ribonucleoprotein binding;3.85252592071761e-05!GO:0030133;transport vesicle;3.9183046773019e-05!GO:0019843;rRNA binding;4.35305504292362e-05!GO:0043623;cellular protein complex assembly;5.33757805693551e-05!GO:0006695;cholesterol biosynthetic process;5.42485246049493e-05!GO:0031324;negative regulation of cellular metabolic process;5.48339183644035e-05!GO:0045454;cell redox homeostasis;5.78236727590731e-05!GO:0050789;regulation of biological process;6.16828997829365e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.0281230825911e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;7.6516123021563e-05!GO:0051427;hormone receptor binding;0.000114351607330539!GO:0005905;coated pit;0.000119622122656696!GO:0050662;coenzyme binding;0.000120539259435423!GO:0016564;transcription repressor activity;0.000143147205518303!GO:0005048;signal sequence binding;0.000151387039495242!GO:0006612;protein targeting to membrane;0.000152397998548256!GO:0006334;nucleosome assembly;0.000162002260935435!GO:0005741;mitochondrial outer membrane;0.0001643148848687!GO:0000314;organellar small ribosomal subunit;0.000178236796818215!GO:0005763;mitochondrial small ribosomal subunit;0.000178236796818215!GO:0030036;actin cytoskeleton organization and biogenesis;0.000180105601864344!GO:0032561;guanyl ribonucleotide binding;0.000184209699574802!GO:0019001;guanyl nucleotide binding;0.000184209699574802!GO:0009892;negative regulation of metabolic process;0.00018762957728027!GO:0016310;phosphorylation;0.000230840838469965!GO:0035257;nuclear hormone receptor binding;0.000235816652033896!GO:0046474;glycerophospholipid biosynthetic process;0.000237085833964351!GO:0005819;spindle;0.000243131468943525!GO:0003899;DNA-directed RNA polymerase activity;0.000247925024303021!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00030134188413997!GO:0030663;COPI coated vesicle membrane;0.000309986766197725!GO:0030126;COPI vesicle coat;0.000309986766197725!GO:0005885;Arp2/3 protein complex;0.000311531011587319!GO:0033116;ER-Golgi intermediate compartment membrane;0.000313540612989081!GO:0051789;response to protein stimulus;0.000345726695584268!GO:0006986;response to unfolded protein;0.000345726695584268!GO:0008186;RNA-dependent ATPase activity;0.000367849442908495!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000375244206192016!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000375244206192016!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000381146212452338!GO:0016481;negative regulation of transcription;0.000394486344393318!GO:0008250;oligosaccharyl transferase complex;0.000418924780211165!GO:0019752;carboxylic acid metabolic process;0.000449881785784401!GO:0031497;chromatin assembly;0.000473419089262365!GO:0009165;nucleotide biosynthetic process;0.000485023791977851!GO:0006082;organic acid metabolic process;0.000504783634382682!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0005103967634031!GO:0051168;nuclear export;0.000512737164113701!GO:0003729;mRNA binding;0.000534170905920462!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000536012094677528!GO:0046467;membrane lipid biosynthetic process;0.000544326705711895!GO:0004576;oligosaccharyl transferase activity;0.000549319545533025!GO:0007010;cytoskeleton organization and biogenesis;0.000591024386946561!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000651603296625249!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000653590545124472!GO:0051252;regulation of RNA metabolic process;0.000653590545124472!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000671373166709195!GO:0006414;translational elongation;0.00073518688413084!GO:0048037;cofactor binding;0.000813401000504466!GO:0051920;peroxiredoxin activity;0.000866794875584532!GO:0003690;double-stranded DNA binding;0.000866955584736032!GO:0045045;secretory pathway;0.000912632573158438!GO:0003714;transcription corepressor activity;0.000952246259527191!GO:0030029;actin filament-based process;0.000971823907337583!GO:0007243;protein kinase cascade;0.000989209489240484!GO:0046489;phosphoinositide biosynthetic process;0.00104731403724269!GO:0016044;membrane organization and biogenesis;0.00105192221057155!GO:0004004;ATP-dependent RNA helicase activity;0.00105806186215998!GO:0005791;rough endoplasmic reticulum;0.00107810528081819!GO:0030137;COPI-coated vesicle;0.00108760999787559!GO:0019222;regulation of metabolic process;0.00111127997199678!GO:0008047;enzyme activator activity;0.00111280904290903!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00111876937324384!GO:0000059;protein import into nucleus, docking;0.00121797665573917!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00123026020628482!GO:0015399;primary active transmembrane transporter activity;0.00123026020628482!GO:0043284;biopolymer biosynthetic process;0.00123897770599819!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00127015163560187!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00127015163560187!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00127015163560187!GO:0030132;clathrin coat of coated pit;0.00129117965901561!GO:0006891;intra-Golgi vesicle-mediated transport;0.00134250739996482!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00135081415569236!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00137502713551867!GO:0051287;NAD binding;0.00139749806159417!GO:0031072;heat shock protein binding;0.00140382984615362!GO:0048500;signal recognition particle;0.00142070892366322!GO:0018196;peptidyl-asparagine modification;0.00150033302744906!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00150033302744906!GO:0006402;mRNA catabolic process;0.00153897674300045!GO:0051329;interphase of mitotic cell cycle;0.00161316380700079!GO:0048471;perinuclear region of cytoplasm;0.00171048692124555!GO:0008361;regulation of cell size;0.00171272741232844!GO:0030658;transport vesicle membrane;0.00173430270908078!GO:0016363;nuclear matrix;0.00173615180783886!GO:0043681;protein import into mitochondrion;0.0017998606388584!GO:0030118;clathrin coat;0.0018238890306574!GO:0051540;metal cluster binding;0.00193776191519398!GO:0051536;iron-sulfur cluster binding;0.00193776191519398!GO:0042802;identical protein binding;0.00194616706117477!GO:0016049;cell growth;0.00210095459755336!GO:0030134;ER to Golgi transport vesicle;0.00210565342695899!GO:0030027;lamellipodium;0.00216189490956317!GO:0015992;proton transport;0.00231265106969702!GO:0005096;GTPase activator activity;0.0023373068049541!GO:0004177;aminopeptidase activity;0.00233930124307544!GO:0006383;transcription from RNA polymerase III promoter;0.00236553228125558!GO:0046483;heterocycle metabolic process;0.00242036288626016!GO:0006626;protein targeting to mitochondrion;0.00245177958546731!GO:0006118;electron transport;0.00259990730923544!GO:0006818;hydrogen transport;0.00261899682356131!GO:0030880;RNA polymerase complex;0.00262659489297216!GO:0033673;negative regulation of kinase activity;0.00265535829279642!GO:0006469;negative regulation of protein kinase activity;0.00265535829279642!GO:0030127;COPII vesicle coat;0.00278138513803093!GO:0012507;ER to Golgi transport vesicle membrane;0.00278138513803093!GO:0007051;spindle organization and biogenesis;0.00280498285518385!GO:0000075;cell cycle checkpoint;0.00286321779622455!GO:0030521;androgen receptor signaling pathway;0.002871266663325!GO:0006650;glycerophospholipid metabolic process;0.00291111276996081!GO:0008180;signalosome;0.00297738597217246!GO:0032984;macromolecular complex disassembly;0.00304615864517763!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00304615864517763!GO:0045047;protein targeting to ER;0.00304615864517763!GO:0043488;regulation of mRNA stability;0.00306782505489218!GO:0043487;regulation of RNA stability;0.00306782505489218!GO:0006289;nucleotide-excision repair;0.00317749437068183!GO:0044262;cellular carbohydrate metabolic process;0.00319100375903418!GO:0044452;nucleolar part;0.00325128349029446!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00328323236595633!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00329633670491065!GO:0008033;tRNA processing;0.00333021158727626!GO:0006497;protein amino acid lipidation;0.00353656191312788!GO:0006261;DNA-dependent DNA replication;0.00357253120240773!GO:0051128;regulation of cellular component organization and biogenesis;0.00361476950461533!GO:0008312;7S RNA binding;0.00372936439488845!GO:0048522;positive regulation of cellular process;0.00378768276099067!GO:0006839;mitochondrial transport;0.00379301779304869!GO:0051539;4 iron, 4 sulfur cluster binding;0.00391551771376414!GO:0051348;negative regulation of transferase activity;0.00392882548172687!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00399394763482964!GO:0006352;transcription initiation;0.00405939489487827!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00406757157518296!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00406757157518296!GO:0035258;steroid hormone receptor binding;0.00417044379419256!GO:0022890;inorganic cation transmembrane transporter activity;0.00429879165772843!GO:0000049;tRNA binding;0.00433999077313926!GO:0051325;interphase;0.00435387082665559!GO:0001726;ruffle;0.00467575854501706!GO:0016408;C-acyltransferase activity;0.00474877350943517!GO:0001558;regulation of cell growth;0.00485401063137544!GO:0030660;Golgi-associated vesicle membrane;0.00498736675878003!GO:0007006;mitochondrial membrane organization and biogenesis;0.00506826381344946!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0051783536838891!GO:0015002;heme-copper terminal oxidase activity;0.0051783536838891!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0051783536838891!GO:0004129;cytochrome-c oxidase activity;0.0051783536838891!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0051783536838891!GO:0000428;DNA-directed RNA polymerase complex;0.0051783536838891!GO:0016251;general RNA polymerase II transcription factor activity;0.00519790098877551!GO:0017166;vinculin binding;0.00520353849844512!GO:0008168;methyltransferase activity;0.00523571455511429!GO:0006401;RNA catabolic process;0.00531119972006297!GO:0051087;chaperone binding;0.00547474979429379!GO:0031901;early endosome membrane;0.00563246407513824!GO:0043492;ATPase activity, coupled to movement of substances;0.00564824028712478!GO:0008139;nuclear localization sequence binding;0.00565536918446133!GO:0005100;Rho GTPase activator activity;0.0059066925888165!GO:0008092;cytoskeletal protein binding;0.00598250070870789!GO:0007264;small GTPase mediated signal transduction;0.00605925515497031!GO:0003711;transcription elongation regulator activity;0.00609033209808967!GO:0003746;translation elongation factor activity;0.0061782414419979!GO:0007050;cell cycle arrest;0.00626667124394855!GO:0031902;late endosome membrane;0.006275455584735!GO:0043241;protein complex disassembly;0.00631459787012039!GO:0016741;transferase activity, transferring one-carbon groups;0.00632550411832264!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00642449107692068!GO:0000339;RNA cap binding;0.00646111075000958!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00673241790412731!GO:0003682;chromatin binding;0.0067766144316996!GO:0006302;double-strand break repair;0.00682329710427772!GO:0042158;lipoprotein biosynthetic process;0.00727837915564298!GO:0008154;actin polymerization and/or depolymerization;0.00732046483097864!GO:0030119;AP-type membrane coat adaptor complex;0.00732046483097864!GO:0065009;regulation of a molecular function;0.0074187439742355!GO:0005869;dynactin complex;0.00756803773520617!GO:0030041;actin filament polymerization;0.0076368503250715!GO:0000776;kinetochore;0.00770987533188554!GO:0005774;vacuolar membrane;0.00772681716457956!GO:0030518;steroid hormone receptor signaling pathway;0.00780678188407396!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0080594540210434!GO:0005874;microtubule;0.00807341630934306!GO:0048487;beta-tubulin binding;0.00819378141993576!GO:0043022;ribosome binding;0.0083159877234303!GO:0030176;integral to endoplasmic reticulum membrane;0.00838661049336956!GO:0006520;amino acid metabolic process;0.00852766996985529!GO:0043624;cellular protein complex disassembly;0.00861636677261077!GO:0031625;ubiquitin protein ligase binding;0.00872355601930666!GO:0003684;damaged DNA binding;0.0087796917211068!GO:0065007;biological regulation;0.0087796917211068!GO:0008632;apoptotic program;0.00882035385503357!GO:0030384;phosphoinositide metabolic process;0.0092175618399859!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00930778293159303!GO:0009967;positive regulation of signal transduction;0.00958520676152074!GO:0000209;protein polyubiquitination;0.00971108743981883!GO:0006595;polyamine metabolic process;0.00999885919406667!GO:0003678;DNA helicase activity;0.0100276069663627!GO:0045893;positive regulation of transcription, DNA-dependent;0.0101873213003225!GO:0015631;tubulin binding;0.0102176677126769!GO:0016197;endosome transport;0.0102702839147882!GO:0030659;cytoplasmic vesicle membrane;0.0103823010148402!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0105934664273289!GO:0006310;DNA recombination;0.0112200748913!GO:0000775;chromosome, pericentric region;0.0112461011393281!GO:0006778;porphyrin metabolic process;0.0112461011393281!GO:0033013;tetrapyrrole metabolic process;0.0112461011393281!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0114481120584607!GO:0030131;clathrin adaptor complex;0.011675510461884!GO:0050681;androgen receptor binding;0.0117082397079888!GO:0006740;NADPH regeneration;0.0117082397079888!GO:0006098;pentose-phosphate shunt;0.0117082397079888!GO:0005684;U2-dependent spliceosome;0.0117235451917443!GO:0006405;RNA export from nucleus;0.0118540656545498!GO:0006506;GPI anchor biosynthetic process;0.0120465921344842!GO:0005832;chaperonin-containing T-complex;0.0120545048421948!GO:0032940;secretion by cell;0.012347152638401!GO:0051052;regulation of DNA metabolic process;0.0123920157103063!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0123982992401027!GO:0045892;negative regulation of transcription, DNA-dependent;0.0130862288616596!GO:0006979;response to oxidative stress;0.0130981059559314!GO:0030125;clathrin vesicle coat;0.0134135180011774!GO:0030665;clathrin coated vesicle membrane;0.0134135180011774!GO:0045941;positive regulation of transcription;0.0136660477002456!GO:0031124;mRNA 3'-end processing;0.0136660477002456!GO:0006607;NLS-bearing substrate import into nucleus;0.0138088486616293!GO:0008234;cysteine-type peptidase activity;0.0138336665674062!GO:0005669;transcription factor TFIID complex;0.0140178424991659!GO:0031529;ruffle organization and biogenesis;0.0144446388893545!GO:0006505;GPI anchor metabolic process;0.0146838439078936!GO:0022406;membrane docking;0.0155659696771621!GO:0048278;vesicle docking;0.0155659696771621!GO:0007052;mitotic spindle organization and biogenesis;0.0163650897303419!GO:0007034;vacuolar transport;0.0164514376287176!GO:0016125;sterol metabolic process;0.016954457248108!GO:0006950;response to stress;0.0174693947296208!GO:0006892;post-Golgi vesicle-mediated transport;0.0177518079025778!GO:0044437;vacuolar part;0.0179985480639682!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0181767477150023!GO:0033043;regulation of organelle organization and biogenesis;0.0181767477150023!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0182415643867806!GO:0006769;nicotinamide metabolic process;0.0183372886092732!GO:0000096;sulfur amino acid metabolic process;0.0186311504726069!GO:0000082;G1/S transition of mitotic cell cycle;0.0188433265208711!GO:0005765;lysosomal membrane;0.0189810656864083!GO:0006904;vesicle docking during exocytosis;0.019258102536253!GO:0005099;Ras GTPase activator activity;0.0193996625800632!GO:0006611;protein export from nucleus;0.019540410879638!GO:0006509;membrane protein ectodomain proteolysis;0.0200827284709297!GO:0033619;membrane protein proteolysis;0.0200827284709297!GO:0006733;oxidoreduction coenzyme metabolic process;0.020395276908585!GO:0005657;replication fork;0.020395276908585!GO:0044433;cytoplasmic vesicle part;0.0209500877745891!GO:0016407;acetyltransferase activity;0.0210227722659742!GO:0022408;negative regulation of cell-cell adhesion;0.0210227722659742!GO:0007021;tubulin folding;0.0216054111692756!GO:0007088;regulation of mitosis;0.0217103474764831!GO:0005862;muscle thin filament tropomyosin;0.022106209177824!GO:0016272;prefoldin complex;0.0221974984766009!GO:0048144;fibroblast proliferation;0.0223635830284632!GO:0048145;regulation of fibroblast proliferation;0.0223635830284632!GO:0006767;water-soluble vitamin metabolic process;0.0228605352805866!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0229366907001617!GO:0047485;protein N-terminus binding;0.0229663321782468!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0229663321782468!GO:0033559;unsaturated fatty acid metabolic process;0.0230709633103932!GO:0006636;unsaturated fatty acid biosynthetic process;0.0230709633103932!GO:0016584;nucleosome positioning;0.0233366461460257!GO:0022411;cellular component disassembly;0.0234266030629388!GO:0006779;porphyrin biosynthetic process;0.023698288582735!GO:0033014;tetrapyrrole biosynthetic process;0.023698288582735!GO:0008299;isoprenoid biosynthetic process;0.0237835543234115!GO:0048146;positive regulation of fibroblast proliferation;0.0241305428760826!GO:0005637;nuclear inner membrane;0.0246638859532193!GO:0044255;cellular lipid metabolic process;0.0261278958043985!GO:0005801;cis-Golgi network;0.026380432769215!GO:0009112;nucleobase metabolic process;0.0269253926517219!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0272963049504221!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0272963049504221!GO:0004674;protein serine/threonine kinase activity;0.027693457272748!GO:0030032;lamellipodium biogenesis;0.0277099405137736!GO:0022415;viral reproductive process;0.0277099405137736!GO:0035035;histone acetyltransferase binding;0.0277099405137736!GO:0050811;GABA receptor binding;0.0277099405137736!GO:0006643;membrane lipid metabolic process;0.0277099405137736!GO:0008094;DNA-dependent ATPase activity;0.0283920096062622!GO:0004527;exonuclease activity;0.0285047954049118!GO:0006739;NADP metabolic process;0.0285047954049118!GO:0006635;fatty acid beta-oxidation;0.0286305709163504!GO:0008022;protein C-terminus binding;0.0286516161948983!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0288801377605277!GO:0043130;ubiquitin binding;0.0293898874376739!GO:0032182;small conjugating protein binding;0.0293898874376739!GO:0001952;regulation of cell-matrix adhesion;0.0297928650532011!GO:0006376;mRNA splice site selection;0.0298185700802339!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0298185700802339!GO:0007093;mitotic cell cycle checkpoint;0.0298993309588139!GO:0016860;intramolecular oxidoreductase activity;0.0299573238093797!GO:0008097;5S rRNA binding;0.0299573238093797!GO:0042168;heme metabolic process;0.0300042493282865!GO:0012506;vesicle membrane;0.0300282081398262!GO:0030522;intracellular receptor-mediated signaling pathway;0.0303546382275087!GO:0031371;ubiquitin conjugating enzyme complex;0.0306408815544946!GO:0008652;amino acid biosynthetic process;0.0313058634941955!GO:0016790;thiolester hydrolase activity;0.0315015936103808!GO:0030833;regulation of actin filament polymerization;0.0316647238564263!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0319825719129773!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0322585056949042!GO:0009303;rRNA transcription;0.0323750321906013!GO:0030145;manganese ion binding;0.0328429296292977!GO:0006378;mRNA polyadenylation;0.0328454410915461!GO:0051537;2 iron, 2 sulfur cluster binding;0.0337427653820594!GO:0045334;clathrin-coated endocytic vesicle;0.0340779289068455!GO:0006984;ER-nuclear signaling pathway;0.0341747922033006!GO:0007040;lysosome organization and biogenesis;0.0346545702640754!GO:0006897;endocytosis;0.034829262667603!GO:0010324;membrane invagination;0.034829262667603!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0356287902589353!GO:0031123;RNA 3'-end processing;0.0357557576602519!GO:0006354;RNA elongation;0.0358541806204936!GO:0003756;protein disulfide isomerase activity;0.0366586037389116!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0366586037389116!GO:0006007;glucose catabolic process;0.0368238491859978!GO:0007030;Golgi organization and biogenesis;0.0368238491859978!GO:0006644;phospholipid metabolic process;0.0369851523861294!GO:0032200;telomere organization and biogenesis;0.0369851523861294!GO:0000723;telomere maintenance;0.0369851523861294!GO:0001953;negative regulation of cell-matrix adhesion;0.037997685271705!GO:0008064;regulation of actin polymerization and/or depolymerization;0.037997685271705!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0382283550848853!GO:0005876;spindle microtubule;0.0382283550848853!GO:0030508;thiol-disulfide exchange intermediate activity;0.0382432213464263!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0385194497464742!GO:0031323;regulation of cellular metabolic process;0.0385519009550569!GO:0005784;translocon complex;0.0392531704856959!GO:0006066;alcohol metabolic process;0.0392531704856959!GO:0006144;purine base metabolic process;0.039622071021645!GO:0009081;branched chain family amino acid metabolic process;0.039622071021645!GO:0048468;cell development;0.0398649970565045!GO:0006220;pyrimidine nucleotide metabolic process;0.0401424833660741!GO:0046128;purine ribonucleoside metabolic process;0.0402710726572647!GO:0042278;purine nucleoside metabolic process;0.0402710726572647!GO:0007033;vacuole organization and biogenesis;0.0404213324384845!GO:0019206;nucleoside kinase activity;0.0404363021269506!GO:0009116;nucleoside metabolic process;0.0404550797295741!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0409675443183872!GO:0009225;nucleotide-sugar metabolic process;0.0409675443183872!GO:0032508;DNA duplex unwinding;0.04159096548183!GO:0032392;DNA geometric change;0.04159096548183!GO:0030911;TPR domain binding;0.0418131578843643!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0421310490659943!GO:0051336;regulation of hydrolase activity;0.0430849658426993!GO:0007569;cell aging;0.0430849658426993!GO:0050790;regulation of catalytic activity;0.0435994099242233!GO:0040008;regulation of growth;0.0438932210672398!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0440132650405199!GO:0009451;RNA modification;0.0444292823401312!GO:0007041;lysosomal transport;0.0448352502348698!GO:0008538;proteasome activator activity;0.0449974650826541!GO:0019783;small conjugating protein-specific protease activity;0.0453868138097691!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0454422718955141!GO:0000786;nucleosome;0.0459458001792874!GO:0000781;chromosome, telomeric region;0.0465008413752856!GO:0016615;malate dehydrogenase activity;0.0465594823236456!GO:0004843;ubiquitin-specific protease activity;0.0465594823236456!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0475411306382589!GO:0015036;disulfide oxidoreductase activity;0.0489192637628437!GO:0004518;nuclease activity;0.0490130333481043!GO:0043086;negative regulation of catalytic activity;0.0492060179327311!GO:0031461;cullin-RING ubiquitin ligase complex;0.0492060179327311!GO:0030128;clathrin coat of endocytic vesicle;0.0492060179327311!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0492060179327311!GO:0030122;AP-2 adaptor complex;0.0492060179327311!GO:0019362;pyridine nucleotide metabolic process;0.0494500931339753!GO:0017134;fibroblast growth factor binding;0.0495061038080026!GO:0006338;chromatin remodeling;0.0498905100713382
|sample_id=11237
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=gum
|top_motifs=ZNF238:1.82452905274;PDX1:1.38493970686;NKX2-2,8:1.11781821258;PAX4:1.0377719361;FOX{I1,J2}:0.901412995684;MYBL2:0.871118000345;GFI1B:0.784686028166;NR3C1:0.771699198438;NFATC1..3:0.733602816823;NKX6-1,2:0.724122787906;TOPORS:0.667467259871;HES1:0.662192593757;AIRE:0.656377740901;EN1,2:0.635054060894;TFAP4:0.6221111426;ALX4:0.616371404769;LHX3,4:0.608516965193;TGIF1:0.574907799624;NFIX:0.566064340136;EBF1:0.557054708747;GZF1:0.529612752876;TLX1..3_NFIC{dimer}:0.512963650539;AR:0.510464212364;MZF1:0.493259700022;FOXP1:0.488664643624;TEAD1:0.482089371374;FOXD3:0.481233872652;NKX3-1:0.475290100043;TBX4,5:0.474968792484;GTF2A1,2:0.461929863811;TP53:0.456599696002;PRRX1,2:0.452851649552;SOX17:0.447939919318;NFE2L2:0.446986017598;ADNP_IRX_SIX_ZHX:0.43887940318;bHLH_family:0.414483418092;YY1:0.414478212768;HOX{A5,B5}:0.410514189067;TAL1_TCF{3,4,12}:0.40915794522;STAT1,3:0.40526484751;PITX1..3:0.400344310053;HOX{A4,D4}:0.394509881909;HAND1,2:0.39442252054;FOX{F1,F2,J1}:0.376449250292;MTF1:0.372549246607;TEF:0.363865119509;FOXA2:0.357854324189;XBP1:0.355684747065;GTF2I:0.344278579286;BACH2:0.342186113285;AHR_ARNT_ARNT2:0.340002433332;GFI1:0.339623955178;FOXO1,3,4:0.338079863476;TFCP2:0.336932034426;STAT5{A,B}:0.333719022484;ELK1,4_GABP{A,B1}:0.332848805513;CRX:0.331797015745;NR1H4:0.33001820797;NRF1:0.31481646574;POU3F1..4:0.287605371767;ZNF143:0.285353842558;PAX5:0.285158593602;ZBTB16:0.276674634701;CEBPA,B_DDIT3:0.271828942712;NFE2:0.259594590149;HSF1,2:0.246894718206;NHLH1,2:0.218210512654;ZBTB6:0.214949421794;HMGA1,2:0.201237300737;SP1:0.199939211603;MAZ:0.194366681238;RXR{A,B,G}:0.172465732207;ZIC1..3:0.16444332723;RBPJ:0.156227596829;POU1F1:0.142186580155;MYB:0.132408405256;FOS_FOS{B,L1}_JUN{B,D}:0.120028062115;ONECUT1,2:0.115656636822;ARID5B:0.106953246931;HLF:0.0854081594227;HOX{A6,A7,B6,B7}:0.0725914134085;PRDM1:0.0678751555981;SRF:0.0589863532205;HNF4A_NR2F1,2:0.0557748505331;SPZ1:0.0427174255459;ATF6:0.0426743552106;ZFP161:0.0418199278245;ZNF423:0.0392897271521;NFY{A,B,C}:0.0308513501606;TFDP1:0.0298375917422;DBP:0.0255391073522;PAX6:0.0198449234899;TFAP2{A,C}:0.0175905345411;KLF4:0.0172161509729;DMAP1_NCOR{1,2}_SMARC:0.0157747420373;PATZ1:0.0152608770879;UFEwm:0.0150182500811;ELF1,2,4:0.0129503005229;NKX3-2:0.011058427107;HBP1_HMGB_SSRP1_UBTF:0.00966320107679;MYFfamily:0.00889843739999;NKX2-1,4:0.00389439583444;FOSL2:-0.00297601766667;PAX8:-0.00320466093674;FOXL1:-0.0131777851076;ESR1:-0.0134936759573;BPTF:-0.0282606229554;SOX5:-0.0389500347972;MAFB:-0.0440169484117;HNF1A:-0.0455007490286;NANOG{mouse}:-0.0622208019542;EVI1:-0.0633331343672;NANOG:-0.0638722492461;LEF1_TCF7_TCF7L1,2:-0.0884141337883;XCPE1{core}:-0.0907310140765;POU6F1:-0.0949154481366;T:-0.0985151078271;HIC1:-0.12248950569;IRF1,2:-0.125432180322;PAX3,7:-0.134238598085;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.136643983573;RFX1:-0.137300164553;HOXA9_MEIS1:-0.145814189146;ESRRA:-0.149794915422;FOXN1:-0.167329757226;EGR1..3:-0.181673305672;CDC5L:-0.18418364581;SREBF1,2:-0.184986028111;CREB1:-0.191621666065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.197026555961;FOXQ1:-0.20977250049;E2F1..5:-0.234281030631;IRF7:-0.237839562538;MEF2{A,B,C,D}:-0.248917766983;NKX2-3_NKX2-5:-0.25511854221;PPARG:-0.259153263221;NFE2L1:-0.272967860718;NFIL3:-0.279170153007;FOX{D1,D2}:-0.299631014372;GATA4:-0.30155538846;MED-1{core}:-0.301881769561;MTE{core}:-0.320470839461;STAT2,4,6:-0.331808808969;GLI1..3:-0.333890115683;RFX2..5_RFXANK_RFXAP:-0.335152153868;ETS1,2:-0.344297999895;CUX2:-0.345341635402;TLX2:-0.345674457071;TBP:-0.365369880391;IKZF1:-0.380885113879;SPIB:-0.38796017833;RUNX1..3:-0.394152229304;GATA6:-0.406730917899;ALX1:-0.412165858347;GCM1,2:-0.426311779584;ATF5_CREB3:-0.435276253374;TFAP2B:-0.438643856085;SPI1:-0.446967591669;REST:-0.45036453797;PAX1,9:-0.453760524521;ZNF384:-0.455351469553;ZNF148:-0.460708919629;PBX1:-0.46654152161;NFKB1_REL_RELA:-0.487600667934;FOXP3:-0.505175765124;RREB1:-0.506504301864;HIF1A:-0.539611259227;MYOD1:-0.554081190018;HMX1:-0.565297340351;FOXM1:-0.579499126968;ATF4:-0.583591454598;PAX2:-0.591745028035;POU5F1:-0.646516914516;RORA:-0.669230018112;SOX2:-0.670507638087;SMAD1..7,9:-0.684117834358;CDX1,2,4:-0.688434241691;SOX{8,9,10}:-0.704340908181;SNAI1..3:-0.718025762546;BREu{core}:-0.721800631537;LMO2:-0.722437205614;JUN:-0.73002908641;OCT4_SOX2{dimer}:-0.746520950846;IKZF2:-0.809617697064;NR6A1:-0.819268153267;ZEB1:-0.831832727761;ATF2:-0.841870371206;NR5A1,2:-0.880988124991;POU2F1..3:-0.912024020943;VSX1,2:-0.929505211375;RXRA_VDR{dimer}:-0.987050381308;EP300:-1.42890335333
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11237-116D4;search_select_hide=table117:FF:11237-116D4
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Fibroblast - Gingival, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10866
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number428
catalog numberSC2625
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005461
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10866 CAGE DRX008260 DRR009132
Accession ID Hg19

Library idBAMCTSS
CNhs10866 DRZ000557 DRZ001942
Accession ID Hg38

Library idBAMCTSS
CNhs10866 DRZ011907 DRZ013292
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005461
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.ACAGTG sRNA-Seq DRX037014 DRR041380
Accession ID Hg19

Library idBAMCTSS
SRhi10003.ACAGTG DRZ007022


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.128
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0672
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.207
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0245
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.275
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0807
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.347
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0628
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.29
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.017
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0823
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0273
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0807
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.00981
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0807
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.207
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.207
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.306
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10866

Jaspar motifP-value
MA0002.20.327
MA0003.10.73
MA0004.10.515
MA0006.10.703
MA0007.10.0572
MA0009.10.569
MA0014.10.116
MA0017.10.463
MA0018.24.69453e-6
MA0019.10.0351
MA0024.10.0826
MA0025.16.36803e-5
MA0027.10.162
MA0028.10.00139
MA0029.10.613
MA0030.10.431
MA0031.10.724
MA0035.29.75224e-4
MA0038.10.512
MA0039.20.0867
MA0040.10.586
MA0041.10.445
MA0042.10.838
MA0043.18.48901e-4
MA0046.10.546
MA0047.20.364
MA0048.10.0278
MA0050.10.195
MA0051.10.876
MA0052.10.358
MA0055.10.0526
MA0057.10.703
MA0058.10.545
MA0059.10.906
MA0060.10.512
MA0061.10.00124
MA0062.20.641
MA0065.20.179
MA0066.10.762
MA0067.10.00977
MA0068.10.86
MA0069.10.243
MA0070.10.253
MA0071.10.587
MA0072.10.661
MA0073.10.581
MA0074.10.961
MA0076.10.0539
MA0077.10.151
MA0078.10.449
MA0079.20.713
MA0080.22.43619e-9
MA0081.10.404
MA0083.10.985
MA0084.10.0214
MA0087.10.408
MA0088.11.30209e-4
MA0090.10.0328
MA0091.10.683
MA0092.10.919
MA0093.10.599
MA0099.29.32491e-5
MA0100.10.209
MA0101.19.36289e-6
MA0102.20.252
MA0103.11.84525e-5
MA0104.20.699
MA0105.10.209
MA0106.10.00864
MA0107.11.78236e-8
MA0108.29.02415e-4
MA0111.10.169
MA0112.20.715
MA0113.10.0973
MA0114.10.83
MA0115.10.248
MA0116.10.867
MA0117.10.196
MA0119.10.00464
MA0122.10.82
MA0124.10.0435
MA0125.10.34
MA0131.10.279
MA0135.10.267
MA0136.11.12609e-4
MA0137.20.256
MA0138.20.553
MA0139.10.705
MA0140.10.114
MA0141.10.857
MA0142.10.0742
MA0143.10.501
MA0144.10.235
MA0145.10.447
MA0146.10.209
MA0147.10.904
MA0148.10.632
MA0149.10.697
MA0150.10.385
MA0152.10.291
MA0153.10.314
MA0154.10.486
MA0155.10.336
MA0156.10.00471
MA0157.10.884
MA0159.10.00662
MA0160.10.401
MA0162.10.111
MA0163.10.225
MA0164.10.597
MA0258.10.923
MA0259.10.619



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10866

Novel motifP-value
10.891
100.197
1000.964
1010.773
1020.362
1030.889
1040.75
1050.79
1060.0564
1070.886
1080.974
1090.636
110.879
1100.0892
1110.643
1120.263
1137.45984e-4
1140.458
1150.47
1160.468
1170.018
1180.927
1190.774
120.44
1200.885
1210.525
1220.0111
1230.86
1240.762
1250.808
1260.436
1270.881
1280.923
1290.498
130.14
1300.124
1310.705
1320.43
1330.887
1340.217
1350.0315
1360.729
1370.194
1380.592
1390.0406
140.366
1400.982
1410.0684
1420.15
1430.402
1440.187
1450.186
1460.189
1470.041
1480.772
1490.707
150.348
1500.785
1510.699
1520.562
1530.031
1540.706
1550.0326
1560.759
1570.222
1581.9784e-4
1590.0497
160.818
1600.967
1610.567
1620.702
1630.612
1640.199
1650.541
1660.98
1670.824
1680.871
1690.0644
170.915
180.852
190.0356
20.69
200.688
210.0277
220.305
230.754
240.47
250.116
260.793
270.44
280.471
290.816
30.308
300.773
310.847
320.0648
330.583
340.309
350.227
360.0932
370.144
380.795
390.603
40.0421
400.0669
410.0887
420.25
430.923
440.034
450.797
460.714
470.439
480.991
490.988
50.738
500.0981
510.896
520.592
530.42
540.714
550.0333
560.985
570.209
580.285
590.731
60.443
600.0661
610.46
620.394
630.139
640.35
650.415
660.395
670.897
680.865
690.628
70.197
700.635
710.798
720.994
730.431
740.0595
750.868
760.25
770.176
780.277
790.373
80.547
800.13
810.776
820.244
830.488
840.344
850.252
860.829
870.0755
880.551
890.611
90.8
900.552
910.808
920.274
930.733
940.147
950.421
960.711
970.714
980.64
992.60464e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10866


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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