FF:11238-116D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005091 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005091 | |||
|accession_numbers=CAGE;DRX008274;DRR009146;DRZ000571;DRZ001956;DRZ011921;DRZ013306 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037092;DRR041458;DRZ007100 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11238-116D5 | |id=FF:11238-116D5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |||
|library_id=CNhs10867 | |||
|library_id_phase_based=2:CNhs10867 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11238 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.ACAGTG.11238 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11238 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.ACAGTG.11238 | |||
|name=Fibroblast - Periodontal Ligament, donor1 | |name=Fibroblast - Periodontal Ligament, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10867,LSID702,release008,COMPLETED | |profile_hcage=CNhs10867,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.092750228888418,0,-0.148808373414207,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0272980855565437,0,0,0.033783900598984,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0571302634081644,0,0,0,0,0,0,0,0,0.00956887948614965,0,0,0,0.547164260055486,0,0,0,-0.0969923612426051,0,0,0.240784590574431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.033783900598984,0,0,0.0307839168403816,0,0,-0.0470644220342874,0.063012462395942,0,0,-0.147554356463588,-0.177413502096885,0,0.067567801197968,0,0.067567801197968,0.0279895735541775,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0154190806418834,0,0,0,-0.107645861978707,-0.292818609799514,0,0,-0.00979148127889537,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC2635 | |rna_catalog_number=SC2635 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D5 | |rna_tube_id=116D5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.ACAGTG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.1957115074863e-281!GO:0043226;organelle;2.40307452357003e-224!GO:0043229;intracellular organelle;4.39675973913698e-224!GO:0043231;intracellular membrane-bound organelle;2.61316889560055e-222!GO:0043227;membrane-bound organelle;6.9941046900353e-222!GO:0005737;cytoplasm;2.63073130692905e-192!GO:0044422;organelle part;4.30227854144774e-169!GO:0044446;intracellular organelle part;1.20455812171844e-167!GO:0044444;cytoplasmic part;9.29786917594611e-133!GO:0032991;macromolecular complex;6.14617780801991e-115!GO:0005634;nucleus;7.33669604964819e-103!GO:0044237;cellular metabolic process;3.03904080408299e-101!GO:0030529;ribonucleoprotein complex;7.01086828979111e-101!GO:0044238;primary metabolic process;1.16430852887928e-100!GO:0043170;macromolecule metabolic process;1.75458275151127e-92!GO:0044428;nuclear part;1.88242195809428e-87!GO:0043233;organelle lumen;2.28563436751776e-82!GO:0031974;membrane-enclosed lumen;2.28563436751776e-82!GO:0003723;RNA binding;7.33691847940203e-81!GO:0005739;mitochondrion;2.3809728046062e-73!GO:0005515;protein binding;8.83276309664391e-71!GO:0005840;ribosome;6.00137233753307e-60!GO:0043234;protein complex;4.10774121308162e-57!GO:0006396;RNA processing;6.1818080233458e-57!GO:0016043;cellular component organization and biogenesis;2.95770892901066e-56!GO:0043283;biopolymer metabolic process;5.24405573060094e-56!GO:0006412;translation;1.56966822182798e-53!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.61104693532352e-53!GO:0003735;structural constituent of ribosome;8.41761603736626e-52!GO:0031090;organelle membrane;4.28232007504128e-50!GO:0044429;mitochondrial part;7.64456276388335e-50!GO:0010467;gene expression;8.3487050148096e-50!GO:0031981;nuclear lumen;2.54692722222033e-49!GO:0043228;non-membrane-bound organelle;3.81781849096762e-47!GO:0043232;intracellular non-membrane-bound organelle;3.81781849096762e-47!GO:0019538;protein metabolic process;3.67678455160874e-46!GO:0031967;organelle envelope;8.06200635671648e-46!GO:0031975;envelope;1.63572405396151e-45!GO:0033279;ribosomal subunit;1.32275441601438e-44!GO:0009058;biosynthetic process;1.95901987199225e-44!GO:0016071;mRNA metabolic process;2.53352615096778e-44!GO:0015031;protein transport;2.79571529038433e-44!GO:0033036;macromolecule localization;4.62363443785906e-44!GO:0006259;DNA metabolic process;7.05981812151269e-43!GO:0008380;RNA splicing;6.83532796536633e-42!GO:0044249;cellular biosynthetic process;1.04006973343701e-41!GO:0005829;cytosol;2.72189798101753e-41!GO:0044260;cellular macromolecule metabolic process;4.42739067889303e-41!GO:0006996;organelle organization and biogenesis;6.81924090298131e-41!GO:0044267;cellular protein metabolic process;1.26885083438772e-40!GO:0045184;establishment of protein localization;2.09455176881592e-40!GO:0008104;protein localization;3.37289101442782e-40!GO:0009059;macromolecule biosynthetic process;4.39522358519411e-40!GO:0006397;mRNA processing;2.46975831880352e-39!GO:0065003;macromolecular complex assembly;1.08423726968844e-36!GO:0007049;cell cycle;3.26415792293948e-35!GO:0046907;intracellular transport;6.1316670217763e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.51484585073469e-35!GO:0003676;nucleic acid binding;8.57420710186787e-34!GO:0022607;cellular component assembly;1.28735469316624e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.39060651115804e-32!GO:0005740;mitochondrial envelope;3.73276986759014e-31!GO:0005654;nucleoplasm;1.05947746516416e-30!GO:0005681;spliceosome;5.13815415634475e-30!GO:0000166;nucleotide binding;4.54170801576688e-29!GO:0031966;mitochondrial membrane;4.75943700970848e-29!GO:0019866;organelle inner membrane;6.02434749158742e-29!GO:0006886;intracellular protein transport;6.75158533129996e-29!GO:0000278;mitotic cell cycle;5.00730308971243e-28!GO:0005694;chromosome;8.84694083021337e-28!GO:0022402;cell cycle process;1.53482417433218e-27!GO:0005743;mitochondrial inner membrane;1.1242398765519e-26!GO:0006974;response to DNA damage stimulus;1.84038961579528e-25!GO:0044445;cytosolic part;3.96901425428695e-25!GO:0044427;chromosomal part;8.58003834011956e-25!GO:0044451;nucleoplasm part;4.01255612640325e-24!GO:0016462;pyrophosphatase activity;1.75292467799501e-23!GO:0000087;M phase of mitotic cell cycle;1.75292467799501e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.39298800405426e-23!GO:0015935;small ribosomal subunit;3.54893266917278e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.67626410081812e-23!GO:0007067;mitosis;4.36674478000272e-23!GO:0022403;cell cycle phase;5.17772768829353e-23!GO:0051649;establishment of cellular localization;7.37473448051594e-23!GO:0051641;cellular localization;8.72033813810975e-23!GO:0017111;nucleoside-triphosphatase activity;1.17677465908129e-22!GO:0015934;large ribosomal subunit;1.47265899121615e-22!GO:0031980;mitochondrial lumen;1.55398664505958e-22!GO:0005759;mitochondrial matrix;1.55398664505958e-22!GO:0016070;RNA metabolic process;2.50328990883161e-22!GO:0006119;oxidative phosphorylation;3.30514207354638e-22!GO:0006281;DNA repair;4.76501954696005e-22!GO:0051301;cell division;1.74654929939409e-21!GO:0044455;mitochondrial membrane part;5.73311385407584e-21!GO:0006457;protein folding;6.79541012849362e-21!GO:0012505;endomembrane system;8.65572870394897e-21!GO:0017076;purine nucleotide binding;2.30323771090484e-20!GO:0000279;M phase;3.02278765008863e-20!GO:0022618;protein-RNA complex assembly;4.15695376878461e-20!GO:0016874;ligase activity;4.74286566844802e-20!GO:0032553;ribonucleotide binding;4.97541238089588e-20!GO:0032555;purine ribonucleotide binding;4.97541238089588e-20!GO:0005730;nucleolus;2.68444393970082e-19!GO:0051276;chromosome organization and biogenesis;3.08828028967906e-19!GO:0048770;pigment granule;1.54290107635619e-18!GO:0042470;melanosome;1.54290107635619e-18!GO:0006512;ubiquitin cycle;2.92439610629173e-18!GO:0009719;response to endogenous stimulus;3.11063616753599e-18!GO:0005746;mitochondrial respiratory chain;1.50594327852104e-17!GO:0005761;mitochondrial ribosome;1.8069597001664e-17!GO:0000313;organellar ribosome;1.8069597001664e-17!GO:0005524;ATP binding;1.82326564685947e-17!GO:0006260;DNA replication;1.83392224705875e-17!GO:0030554;adenyl nucleotide binding;3.36292186051076e-17!GO:0032559;adenyl ribonucleotide binding;5.01629971751771e-17!GO:0008135;translation factor activity, nucleic acid binding;5.78553070289425e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.78553070289425e-17!GO:0005783;endoplasmic reticulum;5.7909401623256e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.93373057432367e-17!GO:0044265;cellular macromolecule catabolic process;6.95162252981901e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.8512422633196e-17!GO:0019941;modification-dependent protein catabolic process;1.44486057241123e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.44486057241123e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.60531187073829e-16!GO:0051186;cofactor metabolic process;2.26083479913467e-16!GO:0044257;cellular protein catabolic process;2.78099979091897e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.97800367388498e-16!GO:0043285;biopolymer catabolic process;3.95709799143015e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.31812933313694e-15!GO:0042254;ribosome biogenesis and assembly;1.72835687724532e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.93653372857357e-15!GO:0003954;NADH dehydrogenase activity;1.93653372857357e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.93653372857357e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.09199864211185e-15!GO:0000375;RNA splicing, via transesterification reactions;2.09199864211185e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.09199864211185e-15!GO:0005635;nuclear envelope;2.24407562588592e-15!GO:0009057;macromolecule catabolic process;5.42393809640154e-15!GO:0044453;nuclear membrane part;7.40925277165505e-15!GO:0044432;endoplasmic reticulum part;9.46494967578676e-15!GO:0031965;nuclear membrane;1.41772608337574e-14!GO:0030163;protein catabolic process;1.83910131007355e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.99761949016976e-14!GO:0008134;transcription factor binding;2.439701881013e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.85581616288424e-14!GO:0006605;protein targeting;3.8753587220243e-14!GO:0044248;cellular catabolic process;4.03404007006146e-14!GO:0048193;Golgi vesicle transport;5.68506789426046e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.83440888916226e-14!GO:0042773;ATP synthesis coupled electron transport;7.83440888916226e-14!GO:0006323;DNA packaging;7.85774424368874e-14!GO:0005794;Golgi apparatus;1.41715965145263e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.44367917462924e-13!GO:0045271;respiratory chain complex I;1.44367917462924e-13!GO:0005747;mitochondrial respiratory chain complex I;1.44367917462924e-13!GO:0003743;translation initiation factor activity;2.32540231164397e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.02971675180439e-13!GO:0051082;unfolded protein binding;5.92065553012927e-13!GO:0016604;nuclear body;6.87540816798215e-13!GO:0000785;chromatin;9.09764755453888e-13!GO:0006413;translational initiation;9.11836522620401e-13!GO:0006732;coenzyme metabolic process;9.19535967969414e-13!GO:0065004;protein-DNA complex assembly;1.78125260955206e-12!GO:0051726;regulation of cell cycle;1.81856605294589e-12!GO:0016887;ATPase activity;1.84067397624278e-12!GO:0042623;ATPase activity, coupled;2.04369196609879e-12!GO:0000074;regulation of progression through cell cycle;2.31805114191008e-12!GO:0006333;chromatin assembly or disassembly;2.53638340930781e-12!GO:0004386;helicase activity;2.76108001040234e-12!GO:0005643;nuclear pore;3.8840293457177e-12!GO:0016192;vesicle-mediated transport;4.80895250684033e-12!GO:0009055;electron carrier activity;6.44554608039813e-12!GO:0043412;biopolymer modification;7.15124379005918e-12!GO:0006399;tRNA metabolic process;7.21719258851681e-12!GO:0015630;microtubule cytoskeleton;8.22923714748054e-12!GO:0005793;ER-Golgi intermediate compartment;1.97185917726331e-11!GO:0009259;ribonucleotide metabolic process;2.9108438643712e-11!GO:0000775;chromosome, pericentric region;4.83680265669957e-11!GO:0065002;intracellular protein transport across a membrane;5.92577050789187e-11!GO:0006446;regulation of translational initiation;8.78490707680783e-11!GO:0050657;nucleic acid transport;9.44606686056867e-11!GO:0051236;establishment of RNA localization;9.44606686056867e-11!GO:0050658;RNA transport;9.44606686056867e-11!GO:0006163;purine nucleotide metabolic process;1.09278683397567e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.12715063298914e-10!GO:0006403;RNA localization;1.2343202849162e-10!GO:0006334;nucleosome assembly;1.48494772850339e-10!GO:0006913;nucleocytoplasmic transport;2.15555926525693e-10!GO:0006364;rRNA processing;2.20405490039401e-10!GO:0008026;ATP-dependent helicase activity;2.3406860075827e-10!GO:0005789;endoplasmic reticulum membrane;3.29326496678124e-10!GO:0046930;pore complex;3.30952974594559e-10!GO:0006464;protein modification process;3.4787299900001e-10!GO:0008565;protein transporter activity;4.1744359762127e-10!GO:0009150;purine ribonucleotide metabolic process;4.51826946461568e-10!GO:0016607;nuclear speck;4.92058701964641e-10!GO:0051169;nuclear transport;5.0494942166594e-10!GO:0008639;small protein conjugating enzyme activity;5.43033058427301e-10!GO:0005819;spindle;6.94306465925483e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.99682464538443e-10!GO:0016072;rRNA metabolic process;7.17025201498848e-10!GO:0009260;ribonucleotide biosynthetic process;8.97884337964126e-10!GO:0031497;chromatin assembly;9.1634060924748e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.0076542141031e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.0076542141031e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.0076542141031e-09!GO:0004842;ubiquitin-protein ligase activity;1.0232492053203e-09!GO:0009060;aerobic respiration;1.04654328788474e-09!GO:0006164;purine nucleotide biosynthetic process;1.05800366721742e-09!GO:0003712;transcription cofactor activity;1.18093275229402e-09!GO:0043038;amino acid activation;1.36781404201044e-09!GO:0006418;tRNA aminoacylation for protein translation;1.36781404201044e-09!GO:0043039;tRNA aminoacylation;1.36781404201044e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.67921506306771e-09!GO:0019787;small conjugating protein ligase activity;2.59857463539919e-09!GO:0006461;protein complex assembly;3.45445363006532e-09!GO:0045333;cellular respiration;3.99324309339414e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.42135298135278e-09!GO:0043566;structure-specific DNA binding;4.54034654243684e-09!GO:0003697;single-stranded DNA binding;4.58219777441766e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.78475513729865e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.06300807313187e-09!GO:0009141;nucleoside triphosphate metabolic process;6.35486310084232e-09!GO:0043687;post-translational protein modification;7.25612462082453e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.49849045978492e-09!GO:0051028;mRNA transport;8.31235690419585e-09!GO:0050794;regulation of cellular process;9.58795631606259e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.88476831212177e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.14269678124288e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.16197565230445e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.16197565230445e-08!GO:0005813;centrosome;1.46978736715383e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.66664872405478e-08!GO:0016881;acid-amino acid ligase activity;2.04236876080097e-08!GO:0016779;nucleotidyltransferase activity;2.53490989124923e-08!GO:0006366;transcription from RNA polymerase II promoter;2.81832995500438e-08!GO:0006099;tricarboxylic acid cycle;2.95003683971017e-08!GO:0046356;acetyl-CoA catabolic process;2.95003683971017e-08!GO:0009056;catabolic process;3.34948577626389e-08!GO:0005815;microtubule organizing center;4.00411572733989e-08!GO:0051188;cofactor biosynthetic process;4.21548192154604e-08!GO:0006261;DNA-dependent DNA replication;5.82559323743584e-08!GO:0007051;spindle organization and biogenesis;6.83067760111707e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.27409244744059e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.27409244744059e-08!GO:0030120;vesicle coat;8.03379155983043e-08!GO:0030662;coated vesicle membrane;8.03379155983043e-08!GO:0015986;ATP synthesis coupled proton transport;8.21545065945504e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.21545065945504e-08!GO:0012501;programmed cell death;8.36942129507839e-08!GO:0017038;protein import;8.47073088506584e-08!GO:0006084;acetyl-CoA metabolic process;9.16107180675872e-08!GO:0016740;transferase activity;9.76482289713056e-08!GO:0046034;ATP metabolic process;9.98885131080433e-08!GO:0009109;coenzyme catabolic process;9.99644236389841e-08!GO:0006915;apoptosis;1.29266450644271e-07!GO:0003924;GTPase activity;1.42220676741037e-07!GO:0048475;coated membrane;1.45507644796634e-07!GO:0030117;membrane coat;1.45507644796634e-07!GO:0019829;cation-transporting ATPase activity;1.53293766790584e-07!GO:0051187;cofactor catabolic process;1.5543093132001e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.65611205848831e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.65611205848831e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.69889239387908e-07!GO:0051329;interphase of mitotic cell cycle;1.73881970380306e-07!GO:0007005;mitochondrion organization and biogenesis;2.79477066506368e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.88396642582675e-07!GO:0016568;chromatin modification;3.16327472138858e-07!GO:0009117;nucleotide metabolic process;3.16327472138858e-07!GO:0008094;DNA-dependent ATPase activity;3.535005391835e-07!GO:0005657;replication fork;3.64081843447356e-07!GO:0016491;oxidoreductase activity;4.54911789666353e-07!GO:0032446;protein modification by small protein conjugation;4.86681349026345e-07!GO:0000151;ubiquitin ligase complex;5.93450974918829e-07!GO:0000245;spliceosome assembly;6.09776560296277e-07!GO:0051325;interphase;6.98018672559827e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.26618841347492e-07!GO:0005667;transcription factor complex;7.57422184296691e-07!GO:0000075;cell cycle checkpoint;7.74164915812154e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.30784330088565e-07!GO:0016567;protein ubiquitination;8.91077901124518e-07!GO:0048523;negative regulation of cellular process;9.15762774206724e-07!GO:0044431;Golgi apparatus part;1.05673592197529e-06!GO:0008219;cell death;1.06387500306697e-06!GO:0016265;death;1.06387500306697e-06!GO:0005788;endoplasmic reticulum lumen;1.1818290268231e-06!GO:0016859;cis-trans isomerase activity;1.30637427650914e-06!GO:0006754;ATP biosynthetic process;1.33868559645599e-06!GO:0006753;nucleoside phosphate metabolic process;1.33868559645599e-06!GO:0045259;proton-transporting ATP synthase complex;1.76063883577473e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.87708813768862e-06!GO:0009108;coenzyme biosynthetic process;2.06737038403052e-06!GO:0005762;mitochondrial large ribosomal subunit;2.10721805714459e-06!GO:0000315;organellar large ribosomal subunit;2.10721805714459e-06!GO:0051246;regulation of protein metabolic process;2.49743889396462e-06!GO:0016853;isomerase activity;2.90222261785773e-06!GO:0005768;endosome;3.02134536632172e-06!GO:0031324;negative regulation of cellular metabolic process;3.5294642894048e-06!GO:0003713;transcription coactivator activity;3.68244946996675e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.68244946996675e-06!GO:0006613;cotranslational protein targeting to membrane;3.78385131114102e-06!GO:0003724;RNA helicase activity;3.93650262035041e-06!GO:0006752;group transfer coenzyme metabolic process;4.56598008758711e-06!GO:0003899;DNA-directed RNA polymerase activity;5.26320402747801e-06!GO:0000776;kinetochore;6.10445237373423e-06!GO:0007059;chromosome segregation;6.19640603589631e-06!GO:0005525;GTP binding;6.461620078357e-06!GO:0008654;phospholipid biosynthetic process;6.47490383076793e-06!GO:0000786;nucleosome;8.31131919629656e-06!GO:0016563;transcription activator activity;1.05266415665929e-05!GO:0050789;regulation of biological process;1.16540043765147e-05!GO:0006302;double-strand break repair;1.23505449033185e-05!GO:0005798;Golgi-associated vesicle;1.23555907743222e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.28836103163712e-05!GO:0016126;sterol biosynthetic process;1.29603698482853e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.32957964624945e-05!GO:0007010;cytoskeleton organization and biogenesis;1.48731720023312e-05!GO:0006091;generation of precursor metabolites and energy;1.49881605589361e-05!GO:0043623;cellular protein complex assembly;1.59226226828756e-05!GO:0000314;organellar small ribosomal subunit;1.65979594013782e-05!GO:0005763;mitochondrial small ribosomal subunit;1.65979594013782e-05!GO:0004298;threonine endopeptidase activity;1.78844349467289e-05!GO:0051170;nuclear import;1.79456843580675e-05!GO:0031252;leading edge;1.79870886644287e-05!GO:0019222;regulation of metabolic process;1.8958503665246e-05!GO:0044440;endosomal part;2.06736714046603e-05!GO:0010008;endosome membrane;2.06736714046603e-05!GO:0043021;ribonucleoprotein binding;2.09695594409303e-05!GO:0019843;rRNA binding;2.1664533512179e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.37125781957657e-05!GO:0048519;negative regulation of biological process;2.47554226198193e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.49154173857881e-05!GO:0009892;negative regulation of metabolic process;2.71431259373429e-05!GO:0006310;DNA recombination;2.82904154767725e-05!GO:0045454;cell redox homeostasis;2.83600297089821e-05!GO:0000139;Golgi membrane;3.11527397462794e-05!GO:0006606;protein import into nucleus;3.83859293912669e-05!GO:0032561;guanyl ribonucleotide binding;3.84604211235994e-05!GO:0019001;guanyl nucleotide binding;3.84604211235994e-05!GO:0045786;negative regulation of progression through cell cycle;3.97793232002209e-05!GO:0016787;hydrolase activity;4.31702662051175e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.47933790550722e-05!GO:0031988;membrane-bound vesicle;4.64144738024703e-05!GO:0051427;hormone receptor binding;5.56047347914073e-05!GO:0006793;phosphorus metabolic process;6.26154803507608e-05!GO:0006796;phosphate metabolic process;6.26154803507608e-05!GO:0006916;anti-apoptosis;6.27142178152062e-05!GO:0030867;rough endoplasmic reticulum membrane;6.31210529500677e-05!GO:0003684;damaged DNA binding;7.14529205414795e-05!GO:0003682;chromatin binding;8.04627178455291e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.21049266250276e-05!GO:0031968;organelle outer membrane;8.6479771466804e-05!GO:0006695;cholesterol biosynthetic process;9.14130601534935e-05!GO:0016481;negative regulation of transcription;9.38667933112659e-05!GO:0019867;outer membrane;0.000103715572993397!GO:0016564;transcription repressor activity;0.000116365290695535!GO:0008186;RNA-dependent ATPase activity;0.000117893357525182!GO:0035257;nuclear hormone receptor binding;0.000120213701228559!GO:0051168;nuclear export;0.000130148193071085!GO:0016310;phosphorylation;0.000140136952937158!GO:0016363;nuclear matrix;0.000151530125371211!GO:0005770;late endosome;0.000154722178671983!GO:0005905;coated pit;0.000158066988019036!GO:0007088;regulation of mitosis;0.000164694854265068!GO:0031982;vesicle;0.000177408544050006!GO:0007052;mitotic spindle organization and biogenesis;0.000185072823531886!GO:0031410;cytoplasmic vesicle;0.00018799570957341!GO:0005769;early endosome;0.000189167483805519!GO:0005874;microtubule;0.000189167483805519!GO:0051252;regulation of RNA metabolic process;0.000205030214316866!GO:0000059;protein import into nucleus, docking;0.000219977266654814!GO:0003690;double-stranded DNA binding;0.000220330372760052!GO:0042981;regulation of apoptosis;0.000222421649579899!GO:0019899;enzyme binding;0.000228931274710528!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000231559445966997!GO:0006612;protein targeting to membrane;0.000241783699154621!GO:0008610;lipid biosynthetic process;0.000256686314532297!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000261948017510206!GO:0007093;mitotic cell cycle checkpoint;0.000265285720304155!GO:0003678;DNA helicase activity;0.000266083115643059!GO:0008168;methyltransferase activity;0.000270043345100933!GO:0043067;regulation of programmed cell death;0.000270043345100933!GO:0006626;protein targeting to mitochondrion;0.000271019580640866!GO:0016741;transferase activity, transferring one-carbon groups;0.000275250551090564!GO:0005885;Arp2/3 protein complex;0.000290926607769023!GO:0046474;glycerophospholipid biosynthetic process;0.000294416683326175!GO:0000228;nuclear chromosome;0.00029550170762018!GO:0043681;protein import into mitochondrion;0.000301868031554751!GO:0006383;transcription from RNA polymerase III promoter;0.000323825961768885!GO:0043069;negative regulation of programmed cell death;0.000344419883526177!GO:0030133;transport vesicle;0.000346632657583652!GO:0004004;ATP-dependent RNA helicase activity;0.000346915456489445!GO:0005048;signal sequence binding;0.00034957221891803!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000350743525613955!GO:0051052;regulation of DNA metabolic process;0.000354943266908079!GO:0005741;mitochondrial outer membrane;0.00039816551072479!GO:0008250;oligosaccharyl transferase complex;0.00039816551072479!GO:0043066;negative regulation of apoptosis;0.000428599938662061!GO:0009165;nucleotide biosynthetic process;0.000447330119996061!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00045622262278315!GO:0008033;tRNA processing;0.000476220203391688!GO:0033116;ER-Golgi intermediate compartment membrane;0.000482447240101985!GO:0004576;oligosaccharyl transferase activity;0.00049281709496139!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000576457620418518!GO:0006414;translational elongation;0.000577863860731367!GO:0003729;mRNA binding;0.000578140035120802!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000591569216426507!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000640324917474531!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000680535517680558!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000694217364450493!GO:0050662;coenzyme binding;0.000700661640633421!GO:0008361;regulation of cell size;0.000706841400587809!GO:0006839;mitochondrial transport;0.000755808579044628!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000760703063591192!GO:0051789;response to protein stimulus;0.000818882510168276!GO:0006986;response to unfolded protein;0.000818882510168276!GO:0044452;nucleolar part;0.000819721249819981!GO:0051920;peroxiredoxin activity;0.000838422467778442!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00091122021688869!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00091122021688869!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00091122021688869!GO:0030663;COPI coated vesicle membrane;0.000917232862529101!GO:0030126;COPI vesicle coat;0.000917232862529101!GO:0004527;exonuclease activity;0.000921918271711695!GO:0030036;actin cytoskeleton organization and biogenesis;0.000956951124536054!GO:0016049;cell growth;0.000980128806958994!GO:0005876;spindle microtubule;0.000981084770637127!GO:0046467;membrane lipid biosynthetic process;0.00109267971182129!GO:0048500;signal recognition particle;0.00109267971182129!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00110929037674293!GO:0031323;regulation of cellular metabolic process;0.00121359965738299!GO:0018196;peptidyl-asparagine modification;0.00121359965738299!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00121359965738299!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00123575611985652!GO:0051287;NAD binding;0.00125379606848272!GO:0031072;heat shock protein binding;0.00128872307442881!GO:0005684;U2-dependent spliceosome;0.00130528388480579!GO:0051087;chaperone binding;0.00136207482401942!GO:0000910;cytokinesis;0.00139556513793616!GO:0007017;microtubule-based process;0.00141347453978762!GO:0006289;nucleotide-excision repair;0.00144386054213772!GO:0008312;7S RNA binding;0.00146738142340396!GO:0032984;macromolecular complex disassembly;0.00153824522325154!GO:0015631;tubulin binding;0.00156278810779233!GO:0008180;signalosome;0.00158425389207344!GO:0008047;enzyme activator activity;0.00177017328238901!GO:0000922;spindle pole;0.00177809767680925!GO:0003714;transcription corepressor activity;0.00179540039062203!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0017982091480388!GO:0032508;DNA duplex unwinding;0.0018052090227955!GO:0032392;DNA geometric change;0.0018052090227955!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00196139410969744!GO:0043284;biopolymer biosynthetic process;0.00204599250533946!GO:0030658;transport vesicle membrane;0.00204652931072008!GO:0006402;mRNA catabolic process;0.00206853655649502!GO:0007006;mitochondrial membrane organization and biogenesis;0.00207149819919373!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00213108310246284!GO:0000082;G1/S transition of mitotic cell cycle;0.00213340561465505!GO:0043488;regulation of mRNA stability;0.00214700587368874!GO:0043487;regulation of RNA stability;0.00214700587368874!GO:0005096;GTPase activator activity;0.00216197228916461!GO:0043596;nuclear replication fork;0.00240041109982936!GO:0006268;DNA unwinding during replication;0.00245965707612428!GO:0035258;steroid hormone receptor binding;0.00245965707612428!GO:0006891;intra-Golgi vesicle-mediated transport;0.00245965707612428!GO:0046489;phosphoinositide biosynthetic process;0.00248626451839213!GO:0051540;metal cluster binding;0.00249760031782668!GO:0051536;iron-sulfur cluster binding;0.00249760031782668!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00252791425778597!GO:0045047;protein targeting to ER;0.00252791425778597!GO:0042802;identical protein binding;0.00252791425778597!GO:0006350;transcription;0.00255474847583422!GO:0030118;clathrin coat;0.00260789743888673!GO:0005637;nuclear inner membrane;0.00262182762678405!GO:0030134;ER to Golgi transport vesicle;0.00273198711960654!GO:0030880;RNA polymerase complex;0.00277379244083541!GO:0005791;rough endoplasmic reticulum;0.00280316613205581!GO:0043624;cellular protein complex disassembly;0.00298913673340341!GO:0006352;transcription initiation;0.00299058917780158!GO:0000049;tRNA binding;0.00303336711827143!GO:0048471;perinuclear region of cytoplasm;0.00304988525903987!GO:0030137;COPI-coated vesicle;0.00307591140118373!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00311982616643353!GO:0031124;mRNA 3'-end processing;0.00317109999199234!GO:0043241;protein complex disassembly;0.0032105111175106!GO:0001558;regulation of cell growth;0.00323495819705443!GO:0030132;clathrin coat of coated pit;0.00333666039001188!GO:0030027;lamellipodium;0.00337470169844891!GO:0006275;regulation of DNA replication;0.00338524222253392!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00352529317020145!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00352529317020145!GO:0030029;actin filament-based process;0.00356412793150613!GO:0016044;membrane organization and biogenesis;0.00378951079138929!GO:0000819;sister chromatid segregation;0.00433852982808657!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0043506841126827!GO:0030521;androgen receptor signaling pathway;0.00435626077602617!GO:0004674;protein serine/threonine kinase activity;0.00457684941943668!GO:0003711;transcription elongation regulator activity;0.00464185471700842!GO:0000070;mitotic sister chromatid segregation;0.0047486823976796!GO:0031570;DNA integrity checkpoint;0.00490044792736133!GO:0030127;COPII vesicle coat;0.00501732702490331!GO:0012507;ER to Golgi transport vesicle membrane;0.00501732702490331!GO:0006401;RNA catabolic process;0.00531436830982153!GO:0006595;polyamine metabolic process;0.00554827768264784!GO:0048037;cofactor binding;0.00557486289205181!GO:0006611;protein export from nucleus;0.00558581419795409!GO:0019752;carboxylic acid metabolic process;0.00575021408374123!GO:0006405;RNA export from nucleus;0.00576248488576606!GO:0046483;heterocycle metabolic process;0.00576248488576606!GO:0004518;nuclease activity;0.00589591100074722!GO:0006082;organic acid metabolic process;0.00593617170838988!GO:0030660;Golgi-associated vesicle membrane;0.00599490013582761!GO:0000792;heterochromatin;0.00602364916262227!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00602364916262227!GO:0000428;DNA-directed RNA polymerase complex;0.00602364916262227!GO:0003746;translation elongation factor activity;0.00619796314048229!GO:0004003;ATP-dependent DNA helicase activity;0.00622296555815789!GO:0000725;recombinational repair;0.00624796386727466!GO:0000724;double-strand break repair via homologous recombination;0.00624796386727466!GO:0031901;early endosome membrane;0.00625384836023149!GO:0017166;vinculin binding;0.00639083996823331!GO:0006220;pyrimidine nucleotide metabolic process;0.00640095566896707!GO:0065009;regulation of a molecular function;0.00684810190342237!GO:0005869;dynactin complex;0.00699935462823119!GO:0008092;cytoskeletal protein binding;0.00699935462823119!GO:0005758;mitochondrial intermembrane space;0.00712882908161606!GO:0016251;general RNA polymerase II transcription factor activity;0.00725094282500798!GO:0045045;secretory pathway;0.00726378641966284!GO:0030119;AP-type membrane coat adaptor complex;0.00745645490484457!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00755653320330835!GO:0043022;ribosome binding;0.00775878447475894!GO:0000339;RNA cap binding;0.00776529225952128!GO:0045892;negative regulation of transcription, DNA-dependent;0.00782807240152569!GO:0051539;4 iron, 4 sulfur cluster binding;0.00782807240152569!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00808124897383998!GO:0015002;heme-copper terminal oxidase activity;0.00808124897383998!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00808124897383998!GO:0004129;cytochrome-c oxidase activity;0.00808124897383998!GO:0009116;nucleoside metabolic process;0.00808290057967597!GO:0008139;nuclear localization sequence binding;0.00830376264963502!GO:0006144;purine base metabolic process;0.00854255744468794!GO:0006284;base-excision repair;0.00854500310368511!GO:0016408;C-acyltransferase activity;0.0085983475788301!GO:0009112;nucleobase metabolic process;0.00866835869117932!GO:0006520;amino acid metabolic process;0.00868459780305349!GO:0016272;prefoldin complex;0.00869917149859466!GO:0005773;vacuole;0.00881320873064178!GO:0005832;chaperonin-containing T-complex;0.00889796862130409!GO:0000152;nuclear ubiquitin ligase complex;0.00891440516733482!GO:0043601;nuclear replisome;0.00897605833531657!GO:0030894;replisome;0.00897605833531657!GO:0015992;proton transport;0.00940278014488354!GO:0044454;nuclear chromosome part;0.0094880733319718!GO:0008022;protein C-terminus binding;0.00954915412646713!GO:0006338;chromatin remodeling;0.0097104962353347!GO:0010468;regulation of gene expression;0.00971211349758878!GO:0007021;tubulin folding;0.00974230278824476!GO:0031123;RNA 3'-end processing;0.00975184029096463!GO:0016584;nucleosome positioning;0.00977611526312319!GO:0007050;cell cycle arrest;0.00986866944421863!GO:0030176;integral to endoplasmic reticulum membrane;0.00994315685109719!GO:0048522;positive regulation of cellular process;0.00997399578608288!GO:0000096;sulfur amino acid metabolic process;0.0100687275859056!GO:0065007;biological regulation;0.0101837618910912!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0106070774278302!GO:0006818;hydrogen transport;0.0107232164466992!GO:0031970;organelle envelope lumen;0.0111837236502343!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0113593957051349!GO:0007264;small GTPase mediated signal transduction;0.0113672736711017!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0115245080280572!GO:0015399;primary active transmembrane transporter activity;0.0115245080280572!GO:0048487;beta-tubulin binding;0.0117139779972543!GO:0001726;ruffle;0.0117764733668867!GO:0000178;exosome (RNase complex);0.0119717250109086!GO:0022411;cellular component disassembly;0.0120970520043121!GO:0006270;DNA replication initiation;0.0121542900651043!GO:0006950;response to stress;0.0122050773873818!GO:0030131;clathrin adaptor complex;0.012591246526566!GO:0006650;glycerophospholipid metabolic process;0.0126057166306757!GO:0019206;nucleoside kinase activity;0.0128950316708749!GO:0044262;cellular carbohydrate metabolic process;0.013302379023499!GO:0042393;histone binding;0.0133981780570059!GO:0042770;DNA damage response, signal transduction;0.0134288415278473!GO:0000209;protein polyubiquitination;0.0137481880288174!GO:0000726;non-recombinational repair;0.0137481880288174!GO:0031577;spindle checkpoint;0.0142155895104892!GO:0006007;glucose catabolic process;0.0142271294139074!GO:0005669;transcription factor TFIID complex;0.0145342909564611!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0148923088088726!GO:0008632;apoptotic program;0.0149275505171023!GO:0000077;DNA damage checkpoint;0.0157285156831331!GO:0006497;protein amino acid lipidation;0.0163842195806727!GO:0051128;regulation of cellular component organization and biogenesis;0.0169943672342436!GO:0016197;endosome transport;0.0170931206942341!GO:0046128;purine ribonucleoside metabolic process;0.0173359537710397!GO:0042278;purine nucleoside metabolic process;0.0173359537710397!GO:0006740;NADPH regeneration;0.0173430256918772!GO:0006098;pentose-phosphate shunt;0.0173430256918772!GO:0004177;aminopeptidase activity;0.0174264510026032!GO:0006979;response to oxidative stress;0.0174305435314771!GO:0009303;rRNA transcription;0.017476567922693!GO:0050681;androgen receptor binding;0.017489603334687!GO:0005862;muscle thin filament tropomyosin;0.0176334535009375!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0179541608461632!GO:0005100;Rho GTPase activator activity;0.0180386780282176!GO:0000323;lytic vacuole;0.0181286018540712!GO:0005764;lysosome;0.0181286018540712!GO:0032200;telomere organization and biogenesis;0.0183614324469539!GO:0000723;telomere maintenance;0.0183614324469539!GO:0006509;membrane protein ectodomain proteolysis;0.0184217519527641!GO:0033619;membrane protein proteolysis;0.0184217519527641!GO:0030125;clathrin vesicle coat;0.0184302280328061!GO:0030665;clathrin coated vesicle membrane;0.0184302280328061!GO:0005680;anaphase-promoting complex;0.0187295098729154!GO:0006892;post-Golgi vesicle-mediated transport;0.0190950751731272!GO:0008234;cysteine-type peptidase activity;0.0192589826934757!GO:0000287;magnesium ion binding;0.0194995215028541!GO:0006378;mRNA polyadenylation;0.0197374788142868!GO:0030496;midbody;0.0200001493196525!GO:0015036;disulfide oxidoreductase activity;0.0200659666732198!GO:0030518;steroid hormone receptor signaling pathway;0.0203697248096174!GO:0000793;condensed chromosome;0.0206636975896806!GO:0008652;amino acid biosynthetic process;0.0207923458050587!GO:0022890;inorganic cation transmembrane transporter activity;0.0213206334136091!GO:0032259;methylation;0.0229804485231425!GO:0030041;actin filament polymerization;0.0230526070796902!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0232457596170788!GO:0006376;mRNA splice site selection;0.0233169078889408!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0233169078889408!GO:0016407;acetyltransferase activity;0.0234078868376484!GO:0008408;3'-5' exonuclease activity;0.0240535746291236!GO:0007243;protein kinase cascade;0.0248540255516401!GO:0000086;G2/M transition of mitotic cell cycle;0.0250320198739554!GO:0040029;regulation of gene expression, epigenetic;0.0250320198739554!GO:0006778;porphyrin metabolic process;0.0251194024979365!GO:0033013;tetrapyrrole metabolic process;0.0251194024979365!GO:0008299;isoprenoid biosynthetic process;0.0251525195221362!GO:0043189;H4/H2A histone acetyltransferase complex;0.0252204913046744!GO:0005663;DNA replication factor C complex;0.0257063786763522!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0259937361571187!GO:0031625;ubiquitin protein ligase binding;0.0262092737254894!GO:0007346;regulation of progression through mitotic cell cycle;0.0262092737254894!GO:0009124;nucleoside monophosphate biosynthetic process;0.0262167426494942!GO:0009123;nucleoside monophosphate metabolic process;0.0262167426494942!GO:0006506;GPI anchor biosynthetic process;0.0263752345199635!GO:0031529;ruffle organization and biogenesis;0.0263752345199635!GO:0006266;DNA ligation;0.0269331944733991!GO:0008097;5S rRNA binding;0.0269331944733991!GO:0006607;NLS-bearing substrate import into nucleus;0.0271580375065864!GO:0047485;protein N-terminus binding;0.0274231702855764!GO:0051053;negative regulation of DNA metabolic process;0.0274705830685227!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0281367966369217!GO:0004532;exoribonuclease activity;0.0281414725987513!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0281414725987513!GO:0031371;ubiquitin conjugating enzyme complex;0.0282084453878189!GO:0007569;cell aging;0.0287420340976852!GO:0035267;NuA4 histone acetyltransferase complex;0.0289101250672244!GO:0045941;positive regulation of transcription;0.0300957904848958!GO:0033673;negative regulation of kinase activity;0.0302978899091379!GO:0006469;negative regulation of protein kinase activity;0.0302978899091379!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0305877534521222!GO:0016125;sterol metabolic process;0.0308475352960201!GO:0043130;ubiquitin binding;0.0310796979922264!GO:0032182;small conjugating protein binding;0.0310796979922264!GO:0000781;chromosome, telomeric region;0.0310802616358722!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0312566002417753!GO:0030659;cytoplasmic vesicle membrane;0.031472271213827!GO:0006541;glutamine metabolic process;0.0315726024282265!GO:0004448;isocitrate dehydrogenase activity;0.0316664081627744!GO:0006505;GPI anchor metabolic process;0.0319667462790317!GO:0003677;DNA binding;0.0319667462790317!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0333516540230746!GO:0006779;porphyrin biosynthetic process;0.0335244725833759!GO:0033014;tetrapyrrole biosynthetic process;0.0335244725833759!GO:0031902;late endosome membrane;0.0335244725833759!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0338258700708239!GO:0006118;electron transport;0.0342596806408712!GO:0019783;small conjugating protein-specific protease activity;0.0343112538400034!GO:0009451;RNA modification;0.0344545338061325!GO:0006730;one-carbon compound metabolic process;0.0344545338061325!GO:0030145;manganese ion binding;0.0346241655110828!GO:0042158;lipoprotein biosynthetic process;0.034703806727817!GO:0008154;actin polymerization and/or depolymerization;0.0347528295286811!GO:0005784;translocon complex;0.0347928668786344!GO:0051348;negative regulation of transferase activity;0.0349836019960902!GO:0007004;telomere maintenance via telomerase;0.0355661774241212!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0358658274908807!GO:0003756;protein disulfide isomerase activity;0.036150187026187!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.036150187026187!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0364406039425078!GO:0045893;positive regulation of transcription, DNA-dependent;0.0369388181039306!GO:0000084;S phase of mitotic cell cycle;0.037114762586024!GO:0008538;proteasome activator activity;0.037133784422539!GO:0030384;phosphoinositide metabolic process;0.037133784422539!GO:0030508;thiol-disulfide exchange intermediate activity;0.037133784422539!GO:0004843;ubiquitin-specific protease activity;0.0371682840376881!GO:0007034;vacuolar transport;0.0373202728513878!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0379125941057847!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0379125941057847!GO:0009262;deoxyribonucleotide metabolic process;0.0380155154309053!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0383458223615762!GO:0010257;NADH dehydrogenase complex assembly;0.0383458223615762!GO:0033108;mitochondrial respiratory chain complex assembly;0.0383458223615762!GO:0051656;establishment of organelle localization;0.0383903734967243!GO:0003887;DNA-directed DNA polymerase activity;0.0389797249729715!GO:0043414;biopolymer methylation;0.0392658906511138!GO:0042026;protein refolding;0.0393233285601988!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0397016984017215!GO:0040008;regulation of growth;0.0397016984017215!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0399296425096427!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0399352923686701!GO:0016790;thiolester hydrolase activity;0.0399750555251754!GO:0017134;fibroblast growth factor binding;0.0405250881373598!GO:0030911;TPR domain binding;0.0417751548055385!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0425363750084327!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0425363750084327!GO:0006984;ER-nuclear signaling pathway;0.0426937664064837!GO:0030032;lamellipodium biogenesis;0.0433099219851921!GO:0006739;NADP metabolic process;0.0437000980369894!GO:0008536;Ran GTPase binding;0.0437245636790703!GO:0004523;ribonuclease H activity;0.0441590800401796!GO:0032774;RNA biosynthetic process;0.0442333285554707!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0442595187670179!GO:0050790;regulation of catalytic activity;0.0446227143444318!GO:0044433;cytoplasmic vesicle part;0.0447149431375764!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0447674896927222!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0453945667255878!GO:0048146;positive regulation of fibroblast proliferation;0.045745415493928!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0461346281381544!GO:0005099;Ras GTPase activator activity;0.0471368742728639!GO:0000097;sulfur amino acid biosynthetic process;0.0471826099068021!GO:0009066;aspartate family amino acid metabolic process;0.0479685536853628!GO:0003988;acetyl-CoA C-acyltransferase activity;0.048141349797904!GO:0008629;induction of apoptosis by intracellular signals;0.0490939659671923!GO:0009119;ribonucleoside metabolic process;0.0495822247495305!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0495822247495305 | |||
|sample_id=11238 | |sample_id=11238 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=periodontal ligament | |sample_tissue=periodontal ligament | ||
|top_motifs=NKX2-2,8:1.62038246593;GFI1:1.37212230029;PAX8:1.30661164155;TFDP1:1.28046076878;E2F1..5:1.2792540249;ZNF238:1.26178601192;NFY{A,B,C}:1.17465572785;FOXD3:1.12798579662;NKX6-1,2:1.0945143946;CDC5L:1.08909654694;AIRE:1.07167067676;PAX4:1.03597824181;PDX1:1.02836234867;NKX3-1:1.01817027731;MYBL2:0.906610742071;TEF:0.87743910766;MYB:0.838034982959;POU3F1..4:0.832006289197;LHX3,4:0.81527663999;NR1H4:0.780992351677;FOX{I1,J2}:0.743769826919;EN1,2:0.721513671209;ZIC1..3:0.713857834198;ALX4:0.693777458035;GZF1:0.679462615254;ZNF143:0.669455610465;TOPORS:0.668128766655;HOX{A4,D4}:0.645399894096;HBP1_HMGB_SSRP1_UBTF:0.641544436583;NRF1:0.636396108921;FOXP1:0.631802458952;FOXQ1:0.601432870489;SOX17:0.600475416978;POU1F1:0.572798619881;ONECUT1,2:0.565044613309;NKX2-1,4:0.55386967988;GFI1B:0.553262704747;EVI1:0.499632668184;NANOG:0.486924633601;NFIX:0.486060182174;PBX1:0.46039634171;YY1:0.397934643542;PRRX1,2:0.392912762045;TGIF1:0.349773255342;RXR{A,B,G}:0.341995790312;TEAD1:0.330024517707;NR3C1:0.329935390517;GTF2A1,2:0.316610131467;GATA4:0.313912701631;NKX2-3_NKX2-5:0.312602415866;KLF4:0.312431578632;FOXO1,3,4:0.310857058102;NFATC1..3:0.300177397618;STAT5{A,B}:0.293196671063;CDX1,2,4:0.28337842468;HOX{A5,B5}:0.271921747923;FOXA2:0.268530059746;TLX1..3_NFIC{dimer}:0.25341897693;ELK1,4_GABP{A,B1}:0.24965615031;PAX5:0.249512779201;HAND1,2:0.242235585152;PITX1..3:0.228404479816;BACH2:0.227138966788;HSF1,2:0.226723997817;TBX4,5:0.224572109766;UFEwm:0.22310240775;HOX{A6,A7,B6,B7}:0.219921219909;XCPE1{core}:0.202147309312;PAX6:0.20082510023;HES1:0.195818172978;LEF1_TCF7_TCF7L1,2:0.189377040219;MZF1:0.189330020078;GTF2I:0.185272104609;PRDM1:0.164751236552;POU2F1..3:0.160053557236;STAT1,3:0.151166945027;TAL1_TCF{3,4,12}:0.145119567212;NANOG{mouse}:0.144366373804;TFAP4:0.135415807765;SPZ1:0.125802311021;NFE2L2:0.114306354526;FOS_FOS{B,L1}_JUN{B,D}:0.111843239494;ZBTB16:0.105011007807;ZNF384:0.101457938752;FOX{F1,F2,J1}:0.0965616849435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0952641454967;SOX5:0.0707861374241;T:0.0503491911012;AHR_ARNT_ARNT2:0.0422401978396;BPTF:0.0403220507835;FOXM1:0.035740619578;FOXL1:0.0170430749157;ARID5B:0.0160919901344;GCM1,2:0.0110245157908;ELF1,2,4:0.00928696451506;AR:-0.0349868149299;CEBPA,B_DDIT3:-0.0350300395107;FOSL2:-0.0376158145114;CRX:-0.0376542466655;SP1:-0.0446724963838;BREu{core}:-0.0575919765081;PATZ1:-0.0608749591063;MAZ:-0.0625262070401;EBF1:-0.0645379139388;ALX1:-0.0654073905493;PPARG:-0.0731254325603;ADNP_IRX_SIX_ZHX:-0.0789603114881;HNF4A_NR2F1,2:-0.0847110749144;SOX2:-0.085297844835;TP53:-0.0887724010622;NFE2:-0.101792943867;RFX1:-0.111623708779;ATF6:-0.11917133963;HNF1A:-0.124283381035;PAX1,9:-0.136102445431;HMGA1,2:-0.145486102772;SRF:-0.153133069379;POU5F1:-0.161404957324;NHLH1,2:-0.16746030788;NKX3-2:-0.167979780537;HLF:-0.178039434094;TFAP2{A,C}:-0.182927779451;TBP:-0.184785019247;ZFP161:-0.193268311913;MTE{core}:-0.193340910534;OCT4_SOX2{dimer}:-0.195958432388;DMAP1_NCOR{1,2}_SMARC:-0.203209660669;XBP1:-0.20444747449;HIC1:-0.218864805797;SOX{8,9,10}:-0.244847409815;RFX2..5_RFXANK_RFXAP:-0.253587233281;CREB1:-0.261152482265;MEF2{A,B,C,D}:-0.268317916052;RUNX1..3:-0.271072326822;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.27488845664;IKZF2:-0.279161500398;IKZF1:-0.279527140988;GATA6:-0.281481795638;RREB1:-0.319414947193;CUX2:-0.320517213748;DBP:-0.334416724974;MTF1:-0.360206728806;MED-1{core}:-0.36064401982;JUN:-0.363943956925;PAX3,7:-0.36456141176;NR5A1,2:-0.365556204104;GLI1..3:-0.376853434499;HOXA9_MEIS1:-0.38275527777;ESR1:-0.419100138626;FOXN1:-0.425751390043;SPI1:-0.442540985011;IRF1,2:-0.44531085753;ATF5_CREB3:-0.454891228996;ATF4:-0.457119595523;RBPJ:-0.479266551818;ZNF148:-0.479419899258;NFIL3:-0.480319458495;IRF7:-0.489124784428;EGR1..3:-0.49717549581;ZNF423:-0.498309375339;TFCP2:-0.505919929539;NFE2L1:-0.528525115002;SPIB:-0.534808140867;REST:-0.554988008969;NFKB1_REL_RELA:-0.558098498516;MYFfamily:-0.560553397296;TFAP2B:-0.564175612836;STAT2,4,6:-0.57179118856;ETS1,2:-0.58557865982;SNAI1..3:-0.590224698277;ZBTB6:-0.594935850583;ESRRA:-0.635950786203;FOXP3:-0.650843509422;POU6F1:-0.674671787561;RORA:-0.689204366283;VSX1,2:-0.712837803483;NR6A1:-0.723565142057;LMO2:-0.737697360988;SREBF1,2:-0.798974825331;FOX{D1,D2}:-0.81861900475;EP300:-0.825477285232;ZEB1:-0.85666092797;bHLH_family:-0.856732569767;MYOD1:-0.862566849801;ATF2:-0.873733236967;HIF1A:-0.924711057668;RXRA_VDR{dimer}:-0.943851565858;PAX2:-0.959486076757;SMAD1..7,9:-1.03081874304;TLX2:-1.03548533566;MAFB:-1.10376078894;HMX1:-1.14108600897 | |top_motifs=NKX2-2,8:1.62038246593;GFI1:1.37212230029;PAX8:1.30661164155;TFDP1:1.28046076878;E2F1..5:1.2792540249;ZNF238:1.26178601192;NFY{A,B,C}:1.17465572785;FOXD3:1.12798579662;NKX6-1,2:1.0945143946;CDC5L:1.08909654694;AIRE:1.07167067676;PAX4:1.03597824181;PDX1:1.02836234867;NKX3-1:1.01817027731;MYBL2:0.906610742071;TEF:0.87743910766;MYB:0.838034982959;POU3F1..4:0.832006289197;LHX3,4:0.81527663999;NR1H4:0.780992351677;FOX{I1,J2}:0.743769826919;EN1,2:0.721513671209;ZIC1..3:0.713857834198;ALX4:0.693777458035;GZF1:0.679462615254;ZNF143:0.669455610465;TOPORS:0.668128766655;HOX{A4,D4}:0.645399894096;HBP1_HMGB_SSRP1_UBTF:0.641544436583;NRF1:0.636396108921;FOXP1:0.631802458952;FOXQ1:0.601432870489;SOX17:0.600475416978;POU1F1:0.572798619881;ONECUT1,2:0.565044613309;NKX2-1,4:0.55386967988;GFI1B:0.553262704747;EVI1:0.499632668184;NANOG:0.486924633601;NFIX:0.486060182174;PBX1:0.46039634171;YY1:0.397934643542;PRRX1,2:0.392912762045;TGIF1:0.349773255342;RXR{A,B,G}:0.341995790312;TEAD1:0.330024517707;NR3C1:0.329935390517;GTF2A1,2:0.316610131467;GATA4:0.313912701631;NKX2-3_NKX2-5:0.312602415866;KLF4:0.312431578632;FOXO1,3,4:0.310857058102;NFATC1..3:0.300177397618;STAT5{A,B}:0.293196671063;CDX1,2,4:0.28337842468;HOX{A5,B5}:0.271921747923;FOXA2:0.268530059746;TLX1..3_NFIC{dimer}:0.25341897693;ELK1,4_GABP{A,B1}:0.24965615031;PAX5:0.249512779201;HAND1,2:0.242235585152;PITX1..3:0.228404479816;BACH2:0.227138966788;HSF1,2:0.226723997817;TBX4,5:0.224572109766;UFEwm:0.22310240775;HOX{A6,A7,B6,B7}:0.219921219909;XCPE1{core}:0.202147309312;PAX6:0.20082510023;HES1:0.195818172978;LEF1_TCF7_TCF7L1,2:0.189377040219;MZF1:0.189330020078;GTF2I:0.185272104609;PRDM1:0.164751236552;POU2F1..3:0.160053557236;STAT1,3:0.151166945027;TAL1_TCF{3,4,12}:0.145119567212;NANOG{mouse}:0.144366373804;TFAP4:0.135415807765;SPZ1:0.125802311021;NFE2L2:0.114306354526;FOS_FOS{B,L1}_JUN{B,D}:0.111843239494;ZBTB16:0.105011007807;ZNF384:0.101457938752;FOX{F1,F2,J1}:0.0965616849435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0952641454967;SOX5:0.0707861374241;T:0.0503491911012;AHR_ARNT_ARNT2:0.0422401978396;BPTF:0.0403220507835;FOXM1:0.035740619578;FOXL1:0.0170430749157;ARID5B:0.0160919901344;GCM1,2:0.0110245157908;ELF1,2,4:0.00928696451506;AR:-0.0349868149299;CEBPA,B_DDIT3:-0.0350300395107;FOSL2:-0.0376158145114;CRX:-0.0376542466655;SP1:-0.0446724963838;BREu{core}:-0.0575919765081;PATZ1:-0.0608749591063;MAZ:-0.0625262070401;EBF1:-0.0645379139388;ALX1:-0.0654073905493;PPARG:-0.0731254325603;ADNP_IRX_SIX_ZHX:-0.0789603114881;HNF4A_NR2F1,2:-0.0847110749144;SOX2:-0.085297844835;TP53:-0.0887724010622;NFE2:-0.101792943867;RFX1:-0.111623708779;ATF6:-0.11917133963;HNF1A:-0.124283381035;PAX1,9:-0.136102445431;HMGA1,2:-0.145486102772;SRF:-0.153133069379;POU5F1:-0.161404957324;NHLH1,2:-0.16746030788;NKX3-2:-0.167979780537;HLF:-0.178039434094;TFAP2{A,C}:-0.182927779451;TBP:-0.184785019247;ZFP161:-0.193268311913;MTE{core}:-0.193340910534;OCT4_SOX2{dimer}:-0.195958432388;DMAP1_NCOR{1,2}_SMARC:-0.203209660669;XBP1:-0.20444747449;HIC1:-0.218864805797;SOX{8,9,10}:-0.244847409815;RFX2..5_RFXANK_RFXAP:-0.253587233281;CREB1:-0.261152482265;MEF2{A,B,C,D}:-0.268317916052;RUNX1..3:-0.271072326822;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.27488845664;IKZF2:-0.279161500398;IKZF1:-0.279527140988;GATA6:-0.281481795638;RREB1:-0.319414947193;CUX2:-0.320517213748;DBP:-0.334416724974;MTF1:-0.360206728806;MED-1{core}:-0.36064401982;JUN:-0.363943956925;PAX3,7:-0.36456141176;NR5A1,2:-0.365556204104;GLI1..3:-0.376853434499;HOXA9_MEIS1:-0.38275527777;ESR1:-0.419100138626;FOXN1:-0.425751390043;SPI1:-0.442540985011;IRF1,2:-0.44531085753;ATF5_CREB3:-0.454891228996;ATF4:-0.457119595523;RBPJ:-0.479266551818;ZNF148:-0.479419899258;NFIL3:-0.480319458495;IRF7:-0.489124784428;EGR1..3:-0.49717549581;ZNF423:-0.498309375339;TFCP2:-0.505919929539;NFE2L1:-0.528525115002;SPIB:-0.534808140867;REST:-0.554988008969;NFKB1_REL_RELA:-0.558098498516;MYFfamily:-0.560553397296;TFAP2B:-0.564175612836;STAT2,4,6:-0.57179118856;ETS1,2:-0.58557865982;SNAI1..3:-0.590224698277;ZBTB6:-0.594935850583;ESRRA:-0.635950786203;FOXP3:-0.650843509422;POU6F1:-0.674671787561;RORA:-0.689204366283;VSX1,2:-0.712837803483;NR6A1:-0.723565142057;LMO2:-0.737697360988;SREBF1,2:-0.798974825331;FOX{D1,D2}:-0.81861900475;EP300:-0.825477285232;ZEB1:-0.85666092797;bHLH_family:-0.856732569767;MYOD1:-0.862566849801;ATF2:-0.873733236967;HIF1A:-0.924711057668;RXRA_VDR{dimer}:-0.943851565858;PAX2:-0.959486076757;SMAD1..7,9:-1.03081874304;TLX2:-1.03548533566;MAFB:-1.10376078894;HMX1:-1.14108600897 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11238-116D5;search_select_hide=table117:FF:11238-116D5 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10867 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10867
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10867
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.653 |
| 10 | 10 | 0.251 |
| 100 | 100 | 0.353 |
| 101 | 101 | 0.995 |
| 102 | 102 | 0.295 |
| 103 | 103 | 0.128 |
| 104 | 104 | 0.739 |
| 105 | 105 | 0.626 |
| 106 | 106 | 1.26575e-4 |
| 107 | 107 | 0.219 |
| 108 | 108 | 0.203 |
| 109 | 109 | 0.957 |
| 11 | 11 | 0.702 |
| 110 | 110 | 0.194 |
| 111 | 111 | 0.906 |
| 112 | 112 | 0.0588 |
| 113 | 113 | 0.188 |
| 114 | 114 | 0.0735 |
| 115 | 115 | 0.54 |
| 116 | 116 | 0.61 |
| 117 | 117 | 0.485 |
| 118 | 118 | 0.842 |
| 119 | 119 | 0.332 |
| 12 | 12 | 0.858 |
| 120 | 120 | 0.903 |
| 121 | 121 | 0.739 |
| 122 | 122 | 0.0575 |
| 123 | 123 | 0.493 |
| 124 | 124 | 0.995 |
| 125 | 125 | 0.363 |
| 126 | 126 | 0.938 |
| 127 | 127 | 0.7 |
| 128 | 128 | 0.0345 |
| 129 | 129 | 0.516 |
| 13 | 13 | 0.582 |
| 130 | 130 | 0.00508 |
| 131 | 131 | 0.471 |
| 132 | 132 | 0.582 |
| 133 | 133 | 0.596 |
| 134 | 134 | 0.0875 |
| 135 | 135 | 0.0186 |
| 136 | 136 | 0.764 |
| 137 | 137 | 0.188 |
| 138 | 138 | 0.141 |
| 139 | 139 | 7.19341e-7 |
| 14 | 14 | 0.302 |
| 140 | 140 | 0.662 |
| 141 | 141 | 0.285 |
| 142 | 142 | 0.331 |
| 143 | 143 | 0.246 |
| 144 | 144 | 0.648 |
| 145 | 145 | 0.375 |
| 146 | 146 | 0.873 |
| 147 | 147 | 0.158 |
| 148 | 148 | 0.234 |
| 149 | 149 | 0.191 |
| 15 | 15 | 0.356 |
| 150 | 150 | 0.954 |
| 151 | 151 | 0.142 |
| 152 | 152 | 0.0275 |
| 153 | 153 | 0.855 |
| 154 | 154 | 0.982 |
| 155 | 155 | 0.0433 |
| 156 | 156 | 0.605 |
| 157 | 157 | 0.108 |
| 158 | 158 | 0.101 |
| 159 | 159 | 0.203 |
| 16 | 16 | 0.462 |
| 160 | 160 | 0.289 |
| 161 | 161 | 0.787 |
| 162 | 162 | 0.311 |
| 163 | 163 | 0.648 |
| 164 | 164 | 0.797 |
| 165 | 165 | 0.576 |
| 166 | 166 | 0.817 |
| 167 | 167 | 0.63 |
| 168 | 168 | 0.172 |
| 169 | 169 | 0.254 |
| 17 | 17 | 0.264 |
| 18 | 18 | 0.672 |
| 19 | 19 | 0.705 |
| 2 | 2 | 0.228 |
| 20 | 20 | 0.277 |
| 21 | 21 | 0.0495 |
| 22 | 22 | 0.513 |
| 23 | 23 | 0.0429 |
| 24 | 24 | 0.288 |
| 25 | 25 | 0.444 |
| 26 | 26 | 0.397 |
| 27 | 27 | 0.133 |
| 28 | 28 | 0.458 |
| 29 | 29 | 0.619 |
| 3 | 3 | 0.855 |
| 30 | 30 | 0.592 |
| 31 | 31 | 0.637 |
| 32 | 32 | 0.848 |
| 33 | 33 | 0.257 |
| 34 | 34 | 0.395 |
| 35 | 35 | 0.32 |
| 36 | 36 | 0.929 |
| 37 | 37 | 0.648 |
| 38 | 38 | 0.42 |
| 39 | 39 | 0.961 |
| 4 | 4 | 0.0927 |
| 40 | 40 | 0.773 |
| 41 | 41 | 0.0377 |
| 42 | 42 | 0.678 |
| 43 | 43 | 0.457 |
| 44 | 44 | 0.312 |
| 45 | 45 | 0.0814 |
| 46 | 46 | 0.829 |
| 47 | 47 | 0.861 |
| 48 | 48 | 0.715 |
| 49 | 49 | 0.492 |
| 5 | 5 | 0.282 |
| 50 | 50 | 0.284 |
| 51 | 51 | 0.65 |
| 52 | 52 | 0.0545 |
| 53 | 53 | 0.663 |
| 54 | 54 | 0.68 |
| 55 | 55 | 0.47 |
| 56 | 56 | 0.963 |
| 57 | 57 | 0.638 |
| 58 | 58 | 0.0826 |
| 59 | 59 | 0.209 |
| 6 | 6 | 0.598 |
| 60 | 60 | 0.0094 |
| 61 | 61 | 0.668 |
| 62 | 62 | 0.0869 |
| 63 | 63 | 0.682 |
| 64 | 64 | 0.803 |
| 65 | 65 | 0.0913 |
| 66 | 66 | 0.012 |
| 67 | 67 | 0.655 |
| 68 | 68 | 0.608 |
| 69 | 69 | 0.425 |
| 7 | 7 | 0.471 |
| 70 | 70 | 0.0552 |
| 71 | 71 | 0.879 |
| 72 | 72 | 0.434 |
| 73 | 73 | 0.196 |
| 74 | 74 | 0.26 |
| 75 | 75 | 0.728 |
| 76 | 76 | 0.686 |
| 77 | 77 | 0.544 |
| 78 | 78 | 0.737 |
| 79 | 79 | 0.375 |
| 8 | 8 | 0.862 |
| 80 | 80 | 0.0932 |
| 81 | 81 | 0.667 |
| 82 | 82 | 0.0119 |
| 83 | 83 | 0.888 |
| 84 | 84 | 0.536 |
| 85 | 85 | 0.0141 |
| 86 | 86 | 0.207 |
| 87 | 87 | 0.905 |
| 88 | 88 | 0.203 |
| 89 | 89 | 0.171 |
| 9 | 9 | 0.468 |
| 90 | 90 | 0.708 |
| 91 | 91 | 0.889 |
| 92 | 92 | 0.0621 |
| 93 | 93 | 0.626 |
| 94 | 94 | 0.444 |
| 95 | 95 | 0.728 |
| 96 | 96 | 0.838 |
| 97 | 97 | 0.924 |
| 98 | 98 | 0.338 |
| 99 | 99 | 0.00562 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10867
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
