FF:11241-116D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004887 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004887 | ||
|accession_numbers=CAGE;DRX008367;DRR009239;DRZ000664;DRZ002049;DRZ012014;DRZ013399 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037139;DRR041505;DRZ007147 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000164 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.38!241.21!MYF5;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.89!DRAP1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!32.58!HOXC5;;chr11:17741111..17741124,+!p1@MYOD1!1.49!29.82!MYOD1;;chr8:25902876..25902936,-!p1@EBF2!1.41!24.61!EBF2;;chr1:40105299..40105326,-!p1@HEYL!1.40!24.32!HEYL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.73!ZBED1;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.91!TWIST1;;chr12:54402745..54402788,+!p1@HOXC8!1.22!15.78!HOXC8;;chr11:65687362..65687436,+!p3@DRAP1!1.20!67.32!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.63!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.18!16.07!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!57.62!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!1.17!17.66!DRAP1;;chr1:203055129..203055147,-!p1@MYOG!1.13!12.45!MYOG;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.87!OSR1;;chr2:85981107..85981120,+!p3@ATOH8!1.08!11.15!ATOH8;;chr11:65687243..65687276,+!p8@DRAP1!1.06!14.19!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!1.03!91.50!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.02!60.95!SNAI2;;chr14:61116183..61116208,-!p1@SIX1!1.01!36.05!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.12!HOXC9;;chr14:62162285..62162296,+!p3@HIF1A!1.00!47.34!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!1.00!22.59!FOXC2;;chr15:57511609..57511651,+!p2@TCF12!1.00!15.20!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!0.99!13.61!ZBTB38;;chr14:62162258..62162269,+!p2@HIF1A!0.98!83.97!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.98!34.02!FOSL1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.25!HOXC10;;chr10:131762504..131762555,-!p1@EBF3!0.96!8.11!EBF3;;chr7:15726296..15726315,-!p1@MEOX2!0.96!8.11!MEOX2;;chr10:31607702..31607755,+!p3@ZEB1!0.93!8.69!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.93!7.53!HOXB6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.24!HOXC5;;chr12:66218923..66218934,+!p14@HMGA2!0.92!7.24!HMGA2;;chr2:85981073..85981091,+!p5@ATOH8!0.92!7.24!ATOH8;;chr11:46299199..46299233,+!p1@CREB3L1!0.91!38.66!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.25!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.91!7.09!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!0.90!6.95!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.89!32.43!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!0.88!6.52!PITX2;;chr19:47523058..47523114,+!p1@NPAS1!0.86!6.23!NPAS1;;chr11:46299539..46299620,+!p2@CREB3L1!0.85!10.71!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!0.84!16.94!HMGA2;;chr11:17741254..17741282,+!p2@MYOD1!0.84!5.94!MYOD1;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.60!CREB3;;chr8:49833978..49833996,-!p1@SNAI2!0.82!124.22!SNAI2;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.65!KLF17;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.50!SIX2;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.09!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.94!TWIST2;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.60!RBPJ;;chr2:85981027..85981047,+!p8@ATOH8!0.77!4.92!ATOH8;;chr11:65687158..65687216,+!p4@DRAP1!0.76!30.11!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.53!RUNX1;;chr2:85981008..85981025,+!p7@ATOH8!0.76!4.78!ATOH8;;chr1:8926441..8926473,-!p10@ENO1!0.75!7.24!ENO1;;chr12:54380036..54380091,+!p4@HOXC10!0.75!4.63!HOXC10;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.63!RFX8;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!0.74!4.49!PITX2;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.49!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.20!HOXC8;;chr11:65667846..65667868,-!p1@FOSL1!0.71!124.80!FOSL1;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.65!SKIL;;chr1:170632723..170632739,+!p8@PRRX1!0.70!4.05!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.69!7.09!TWIST2;;chr10:31610110..31610159,+!p2@ZEB1!0.69!3.91!ZEB1;;chr12:54402790..54402805,+!p2@HOXC8!0.69!3.91!HOXC8;;chr7:15726243..15726293,-!p2@MEOX2!0.69!3.91!MEOX2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.60!ZHX3;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.76!HOXA9;;chr10:31607811..31607837,+!p6@ZEB1!0.68!3.76!ZEB1;;chr12:54394309..54394336,+!p2@HOXC9!0.68!3.76!HOXC9;;chr2:119605214..119605230,-!p1@EN1!0.68!3.76!EN1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.31!DRAP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!17.66!ZBTB20;;chr1:170632250..170632277,+!p7@PRRX1!0.66!3.62!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.65!9.70!TWIST1;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.36!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.65!5.07!HOXB7;;chr4:26323870..26323885,+!p13@RBPJ!0.65!3.47!RBPJ;;chr1:23885981..23886002,-!p1@ID3!0.64!696.40!ID3;;chr12:53614115..53614154,-!p1@RARG!0.64!20.70!RARG;;chr2:85980951..85981004,+!p1@ATOH8!0.64!5.94!ATOH8;;chr22:19748231..19748317,+!p1@TBX1!0.64!3.33!TBX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.33!ZNF385D;;chr8:67525443..67525459,-!p2@MYBL1!0.63!5.21!MYBL1;;chr6:85473156..85473210,-!p2@TBX18!0.63!4.20!TBX18;;chr17:46622440..46622477,-!p5@HOXB2!0.63!3.76!HOXB2;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr2:119604456..119604501,-!p2@EN1!0.62!3.19!EN1;;chrX:85403445..85403479,+!p2@DACH2!0.62!3.19!DACH2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.61!262.78!TAX1BP3;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.33!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!0.61!3.04!HOXA9;;chr10:119303078..119303169,+!p2@EMX2!0.61!3.04!EMX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.79!ZNF804A;;chr1:8938709..8938720,-!p3@ENO1!0.59!173.74!ENO1;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.90!PKNOX2;;chr12:54332608..54332636,+!p1@HOXC13!0.59!2.90!HOXC13;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.90!PAX9;;chr3:141121871..141121885,+!p13@ZBTB38!0.59!2.90!ZBTB38;;chr2:191878874..191878938,-!p1@STAT1!0.58!188.07!STAT1;;chr2:145275162..145275202,-!p2@ZEB2!0.58!20.12!ZEB2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.19!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.28!TBX2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.92!PAWR;;chr4:26322373..26322393,+!p4@RBPJ!0.58!4.49!RBPJ;;chr11:12696071..12696086,+!p3@TEAD1!0.58!3.91!TEAD1;;chr5:92918956..92918969,+!p4@NR2F1!0.58!3.19!NR2F1;;chr5:139487608..139487663,+!p3@PURA!0.57!6.66!PURA;;chr2:214015111..214015179,-!p1@IKZF2!0.57!5.50!IKZF2;;chr1:170632477..170632506,+!p6@PRRX1!0.57!2.75!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.20!SATB2;;chr3:141121820..141121838,+!p9@ZBTB38!0.56!2.61!ZBTB38;;chr12:54394416..54394467,+!p5@HOXC9!0.56!2.61!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!0.56!2.61!TBX15;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.61!HOXA7;;chr17:46621146..46621180,-!p10@HOXB2!0.56!2.61!HOXB2;;chr10:31608127..31608156,+!p1@ZEB1!0.55!59.94!ZEB1;;chr1:151032860..151032918,+!p1@MLLT11!0.55!38.08!MLLT11;;chr5:92918919..92918942,+!p1@NR2F1!0.55!14.04!NR2F1;;chr12:66218212..66218244,+!p5@HMGA2!0.55!4.05!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.04!BNC1;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr2:191878812..191878823,-!p2@STAT1!0.54!3.33!STAT1;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.04!DRAP1;;chr12:115121802..115121814,-!p5@TBX3!0.54!2.46!TBX3;;chr7:15725757..15725828,-!p5@MEOX2!0.54!2.46!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.54!2.46!MEOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.23!HOXB2;;chr16:54320158..54320200,-!p5@IRX3!0.53!3.76!IRX3;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.76!ZBTB16;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.90!ZNF438;;chr12:115121962..115121987,-!p1@TBX3!0.52!24.76!TBX3;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.34!ATOH8;;chr19:13134772..13134822,+!p2@NFIX!0.52!3.76!NFIX;;chr8:145159846..145159889,+!p6@MAF1!0.52!3.62!MAF1;;chr2:102091566..102091581,-!p1@RFX8!0.52!2.32!RFX8;;chr4:26322673..26322684,+!p11@RBPJ!0.52!2.32!RBPJ;;chr11:17741084..17741094,+!p3@MYOD1!0.52!2.32!MYOD1;;chr12:54379029..54379057,+!p2@HOXC10!0.52!2.32!HOXC10;;chr12:54422217..54422239,+!p3@HOXC6!0.52!2.32!HOXC6;;chr19:2867325..2867348,+!p1@ZNF556!0.52!2.32!ZNF556;;chr14:62162224..62162254,+!p1@HIF1A!0.51!433.04!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.50!4.05!MLLT11;;chr17:46622114..46622138,-!p4@HOXB2!0.50!3.76!HOXB2;;chr17:48072574..48072597,-!p1@DLX3!0.50!2.17!DLX3;;chr2:176994408..176994492,+!p1@HOXD8!0.50!2.17!HOXD8;;chr12:54332687..54332701,+!p3@HOXC13!0.50!2.17!HOXC13;;chr12:54380112..54380126,+!p5@HOXC10!0.50!2.17!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.50!2.17!HOXC9;;chr7:150946015..150946070,-!p3@SMARCD3!0.49!5.36!SMARCD3;;chr7:137686763..137686784,-!p5@CREB3L2!0.49!4.20!CREB3L2;;chr5:134369905..134369972,-!p1@PITX1!0.49!3.62!PITX1;;chr3:157823517..157823562,-!p1@SHOX2!0.49!2.32!SHOX2;;chr12:96588219..96588263,+!p2@ELK3!0.48!19.26!ELK3;;chr9:35732514..35732530,+!p5@CREB3!0.48!3.19!CREB3;;chr12:66357214..66357233,+!p13@HMGA2!0.48!2.03!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.48!2.03!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.48!2.03!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.48!2.03!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!0.48!2.03!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.48!2.03!ZNF385D;;chr1:170632683..170632696,+!p12@PRRX1!0.48!2.03!PRRX1;;chr20:30193083..30193098,+!p1@ID1!0.47!218.33!ID1;;chr18:32870260..32870293,+!p1@ZNF271!0.47!33.59!ZNF271;;chr17:46621937..46621966,-!p2@HOXB2!0.47!6.66!HOXB2;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.47!HMGA2;;chr16:54320617..54320643,-!p3@IRX3!0.47!2.75!IRX3;;chr12:124873357..124873401,-!p1@NCOR2!0.46!29.97!NCOR2;;chr12:96588279..96588299,+!p4@ELK3!0.46!11.87!ELK3;;chr1:211433275..211433335,+!p2@RCOR3!0.46!7.38!RCOR3;;chr12:96588368..96588394,+!p3@ELK3!0.46!6.37!ELK3;;chr10:77161133..77161176,-!p3@ZNF503!0.46!4.92!ZNF503;;chr14:62203595..62203676,+!p4@HIF1A!0.46!4.20!HIF1A;;chr1:158985493..158985535,+!p4@IFI16!0.46!3.33!IFI16;;chr12:66218443..66218461,+!p8@HMGA2!0.46!2.61!HMGA2;;chr14:62164416..62164443,+!p27@HIF1A!0.46!1.88!HIF1A;;chr16:1429010..1429038,-!p5@UNKL!0.46!1.88!UNKL;;chr16:86600870..86600921,+!p2@FOXC2!0.46!1.88!FOXC2;;chr2:214014959..214015006,-!p4@IKZF2!0.46!1.88!IKZF2;;chr2:85980903..85980914,+!p11@ATOH8!0.46!1.88!ATOH8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| |expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.38!241.21!MYF5;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.89!DRAP1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!32.58!HOXC5;;chr11:17741111..17741124,+!p1@MYOD1!1.49!29.82!MYOD1;;chr8:25902876..25902936,-!p1@EBF2!1.41!24.61!EBF2;;chr1:40105299..40105326,-!p1@HEYL!1.40!24.32!HEYL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.73!ZBED1;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.91!TWIST1;;chr12:54402745..54402788,+!p1@HOXC8!1.22!15.78!HOXC8;;chr11:65687362..65687436,+!p3@DRAP1!1.20!67.32!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.63!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.18!16.07!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!57.62!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!1.17!17.66!DRAP1;;chr1:203055129..203055147,-!p1@MYOG!1.13!12.45!MYOG;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.87!OSR1;;chr2:85981107..85981120,+!p3@ATOH8!1.08!11.15!ATOH8;;chr11:65687243..65687276,+!p8@DRAP1!1.06!14.19!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!1.03!91.50!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.02!60.95!SNAI2;;chr14:61116183..61116208,-!p1@SIX1!1.01!36.05!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.12!HOXC9;;chr14:62162285..62162296,+!p3@HIF1A!1.00!47.34!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!1.00!22.59!FOXC2;;chr15:57511609..57511651,+!p2@TCF12!1.00!15.20!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!0.99!13.61!ZBTB38;;chr14:62162258..62162269,+!p2@HIF1A!0.98!83.97!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.98!34.02!FOSL1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.25!HOXC10;;chr10:131762504..131762555,-!p1@EBF3!0.96!8.11!EBF3;;chr7:15726296..15726315,-!p1@MEOX2!0.96!8.11!MEOX2;;chr10:31607702..31607755,+!p3@ZEB1!0.93!8.69!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.93!7.53!HOXB6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.24!HOXC5;;chr12:66218923..66218934,+!p14@HMGA2!0.92!7.24!HMGA2;;chr2:85981073..85981091,+!p5@ATOH8!0.92!7.24!ATOH8;;chr11:46299199..46299233,+!p1@CREB3L1!0.91!38.66!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.25!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.91!7.09!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!0.90!6.95!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.89!32.43!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!0.88!6.52!PITX2;;chr19:47523058..47523114,+!p1@NPAS1!0.86!6.23!NPAS1;;chr11:46299539..46299620,+!p2@CREB3L1!0.85!10.71!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!0.84!16.94!HMGA2;;chr11:17741254..17741282,+!p2@MYOD1!0.84!5.94!MYOD1;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.60!CREB3;;chr8:49833978..49833996,-!p1@SNAI2!0.82!124.22!SNAI2;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.65!KLF17;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.50!SIX2;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.09!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.94!TWIST2;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.60!RBPJ;;chr2:85981027..85981047,+!p8@ATOH8!0.77!4.92!ATOH8;;chr11:65687158..65687216,+!p4@DRAP1!0.76!30.11!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.53!RUNX1;;chr2:85981008..85981025,+!p7@ATOH8!0.76!4.78!ATOH8;;chr1:8926441..8926473,-!p10@ENO1!0.75!7.24!ENO1;;chr12:54380036..54380091,+!p4@HOXC10!0.75!4.63!HOXC10;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.63!RFX8;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!0.74!4.49!PITX2;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.49!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.20!HOXC8;;chr11:65667846..65667868,-!p1@FOSL1!0.71!124.80!FOSL1;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.65!SKIL;;chr1:170632723..170632739,+!p8@PRRX1!0.70!4.05!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.69!7.09!TWIST2;;chr10:31610110..31610159,+!p2@ZEB1!0.69!3.91!ZEB1;;chr12:54402790..54402805,+!p2@HOXC8!0.69!3.91!HOXC8;;chr7:15726243..15726293,-!p2@MEOX2!0.69!3.91!MEOX2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.60!ZHX3;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.76!HOXA9;;chr10:31607811..31607837,+!p6@ZEB1!0.68!3.76!ZEB1;;chr12:54394309..54394336,+!p2@HOXC9!0.68!3.76!HOXC9;;chr2:119605214..119605230,-!p1@EN1!0.68!3.76!EN1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.31!DRAP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!17.66!ZBTB20;;chr1:170632250..170632277,+!p7@PRRX1!0.66!3.62!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.65!9.70!TWIST1;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.36!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.65!5.07!HOXB7;;chr4:26323870..26323885,+!p13@RBPJ!0.65!3.47!RBPJ;;chr1:23885981..23886002,-!p1@ID3!0.64!696.40!ID3;;chr12:53614115..53614154,-!p1@RARG!0.64!20.70!RARG;;chr2:85980951..85981004,+!p1@ATOH8!0.64!5.94!ATOH8;;chr22:19748231..19748317,+!p1@TBX1!0.64!3.33!TBX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.33!ZNF385D;;chr8:67525443..67525459,-!p2@MYBL1!0.63!5.21!MYBL1;;chr6:85473156..85473210,-!p2@TBX18!0.63!4.20!TBX18;;chr17:46622440..46622477,-!p5@HOXB2!0.63!3.76!HOXB2;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr2:119604456..119604501,-!p2@EN1!0.62!3.19!EN1;;chrX:85403445..85403479,+!p2@DACH2!0.62!3.19!DACH2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.61!262.78!TAX1BP3;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.33!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!0.61!3.04!HOXA9;;chr10:119303078..119303169,+!p2@EMX2!0.61!3.04!EMX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.79!ZNF804A;;chr1:8938709..8938720,-!p3@ENO1!0.59!173.74!ENO1;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.90!PKNOX2;;chr12:54332608..54332636,+!p1@HOXC13!0.59!2.90!HOXC13;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.90!PAX9;;chr3:141121871..141121885,+!p13@ZBTB38!0.59!2.90!ZBTB38;;chr2:191878874..191878938,-!p1@STAT1!0.58!188.07!STAT1;;chr2:145275162..145275202,-!p2@ZEB2!0.58!20.12!ZEB2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.19!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.28!TBX2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.92!PAWR;;chr4:26322373..26322393,+!p4@RBPJ!0.58!4.49!RBPJ;;chr11:12696071..12696086,+!p3@TEAD1!0.58!3.91!TEAD1;;chr5:92918956..92918969,+!p4@NR2F1!0.58!3.19!NR2F1;;chr5:139487608..139487663,+!p3@PURA!0.57!6.66!PURA;;chr2:214015111..214015179,-!p1@IKZF2!0.57!5.50!IKZF2;;chr1:170632477..170632506,+!p6@PRRX1!0.57!2.75!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.20!SATB2;;chr3:141121820..141121838,+!p9@ZBTB38!0.56!2.61!ZBTB38;;chr12:54394416..54394467,+!p5@HOXC9!0.56!2.61!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!0.56!2.61!TBX15;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.61!HOXA7;;chr17:46621146..46621180,-!p10@HOXB2!0.56!2.61!HOXB2;;chr10:31608127..31608156,+!p1@ZEB1!0.55!59.94!ZEB1;;chr1:151032860..151032918,+!p1@MLLT11!0.55!38.08!MLLT11;;chr5:92918919..92918942,+!p1@NR2F1!0.55!14.04!NR2F1;;chr12:66218212..66218244,+!p5@HMGA2!0.55!4.05!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.04!BNC1;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr2:191878812..191878823,-!p2@STAT1!0.54!3.33!STAT1;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.04!DRAP1;;chr12:115121802..115121814,-!p5@TBX3!0.54!2.46!TBX3;;chr7:15725757..15725828,-!p5@MEOX2!0.54!2.46!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.54!2.46!MEOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.23!HOXB2;;chr16:54320158..54320200,-!p5@IRX3!0.53!3.76!IRX3;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.76!ZBTB16;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.90!ZNF438;;chr12:115121962..115121987,-!p1@TBX3!0.52!24.76!TBX3;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.34!ATOH8;;chr19:13134772..13134822,+!p2@NFIX!0.52!3.76!NFIX;;chr8:145159846..145159889,+!p6@MAF1!0.52!3.62!MAF1;;chr2:102091566..102091581,-!p1@RFX8!0.52!2.32!RFX8;;chr4:26322673..26322684,+!p11@RBPJ!0.52!2.32!RBPJ;;chr11:17741084..17741094,+!p3@MYOD1!0.52!2.32!MYOD1;;chr12:54379029..54379057,+!p2@HOXC10!0.52!2.32!HOXC10;;chr12:54422217..54422239,+!p3@HOXC6!0.52!2.32!HOXC6;;chr19:2867325..2867348,+!p1@ZNF556!0.52!2.32!ZNF556;;chr14:62162224..62162254,+!p1@HIF1A!0.51!433.04!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.50!4.05!MLLT11;;chr17:46622114..46622138,-!p4@HOXB2!0.50!3.76!HOXB2;;chr17:48072574..48072597,-!p1@DLX3!0.50!2.17!DLX3;;chr2:176994408..176994492,+!p1@HOXD8!0.50!2.17!HOXD8;;chr12:54332687..54332701,+!p3@HOXC13!0.50!2.17!HOXC13;;chr12:54380112..54380126,+!p5@HOXC10!0.50!2.17!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.50!2.17!HOXC9;;chr7:150946015..150946070,-!p3@SMARCD3!0.49!5.36!SMARCD3;;chr7:137686763..137686784,-!p5@CREB3L2!0.49!4.20!CREB3L2;;chr5:134369905..134369972,-!p1@PITX1!0.49!3.62!PITX1;;chr3:157823517..157823562,-!p1@SHOX2!0.49!2.32!SHOX2;;chr12:96588219..96588263,+!p2@ELK3!0.48!19.26!ELK3;;chr9:35732514..35732530,+!p5@CREB3!0.48!3.19!CREB3;;chr12:66357214..66357233,+!p13@HMGA2!0.48!2.03!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.48!2.03!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.48!2.03!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.48!2.03!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!0.48!2.03!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.48!2.03!ZNF385D;;chr1:170632683..170632696,+!p12@PRRX1!0.48!2.03!PRRX1;;chr20:30193083..30193098,+!p1@ID1!0.47!218.33!ID1;;chr18:32870260..32870293,+!p1@ZNF271!0.47!33.59!ZNF271;;chr17:46621937..46621966,-!p2@HOXB2!0.47!6.66!HOXB2;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.47!HMGA2;;chr16:54320617..54320643,-!p3@IRX3!0.47!2.75!IRX3;;chr12:124873357..124873401,-!p1@NCOR2!0.46!29.97!NCOR2;;chr12:96588279..96588299,+!p4@ELK3!0.46!11.87!ELK3;;chr1:211433275..211433335,+!p2@RCOR3!0.46!7.38!RCOR3;;chr12:96588368..96588394,+!p3@ELK3!0.46!6.37!ELK3;;chr10:77161133..77161176,-!p3@ZNF503!0.46!4.92!ZNF503;;chr14:62203595..62203676,+!p4@HIF1A!0.46!4.20!HIF1A;;chr1:158985493..158985535,+!p4@IFI16!0.46!3.33!IFI16;;chr12:66218443..66218461,+!p8@HMGA2!0.46!2.61!HMGA2;;chr14:62164416..62164443,+!p27@HIF1A!0.46!1.88!HIF1A;;chr16:1429010..1429038,-!p5@UNKL!0.46!1.88!UNKL;;chr16:86600870..86600921,+!p2@FOXC2!0.46!1.88!FOXC2;;chr2:214014959..214015006,-!p4@IKZF2!0.46!1.88!IKZF2;;chr2:85980903..85980914,+!p11@ATOH8!0.46!1.88!ATOH8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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000515;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000515 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11241-116D8 | |id=FF:11241-116D8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000164 | ||
|is_obsolete= | |||
|library_id=CNhs10870 | |||
|library_id_phase_based=2:CNhs10870 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11241 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.ATGTCA.11241 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11241 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.ATGTCA.11241 | |||
|name=Myoblast, donor1 | |name=Myoblast, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10870,LSID703,release008,COMPLETED | |profile_hcage=CNhs10870,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC3525 | |rna_catalog_number=SC3525 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D8 | |rna_tube_id=116D8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.ATGTCA | |||
|sample_age=58 | |sample_age=58 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=NKX3-1:2.34658123597;FOXL1:1.6833986254;NR3C1:1.65381771102;HMGA1,2:1.45161867784;NKX2-2,8:1.35919552312;EVI1:1.27688861522;HIF1A:1.27185581117;AIRE:1.20648741474;XBP1:1.19991772302;POU3F1..4:1.1922834914;ALX4:1.18143578341;HBP1_HMGB_SSRP1_UBTF:1.16018540484;HSF1,2:1.13642962784;GZF1:1.12007405792;IKZF1:1.10383719303;ZNF238:1.09145631516;TAL1_TCF{3,4,12}:1.08062201792;TEAD1:1.07356348367;SRF:1.05406855792;UFEwm:1.00255782903;HOX{A5,B5}:0.912053929674;TBX4,5:0.909598634328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.902220834589;MAFB:0.881638840257;TBP:0.875198143426;MYBL2:0.833430369202;EBF1:0.77473812988;ELK1,4_GABP{A,B1}:0.751564990856;HES1:0.715679300578;GFI1B:0.71417476744;EN1,2:0.685618215115;NANOG{mouse}:0.679841024261;HMX1:0.678010830463;TFCP2:0.664481385814;TFAP4:0.637719477259;PPARG:0.637616588401;KLF4:0.609737836564;ONECUT1,2:0.593695991353;PAX1,9:0.584742994494;NFE2L1:0.579121026488;ATF6:0.555517517192;MTE{core}:0.545823517364;AR:0.51433161236;LHX3,4:0.507427118644;POU1F1:0.503389288659;PAX4:0.494576952125;TLX1..3_NFIC{dimer}:0.492338785601;RXR{A,B,G}:0.491118127712;NRF1:0.490318076068;ZBTB16:0.485981452808;ESR1:0.483902769886;TP53:0.475835054696;TGIF1:0.471430163487;GTF2A1,2:0.470960752885;NHLH1,2:0.470059075113;MEF2{A,B,C,D}:0.46860301019;STAT5{A,B}:0.460986086711;NKX2-1,4:0.460506903618;NFATC1..3:0.449306382816;GCM1,2:0.44926016843;NFE2L2:0.448793985203;bHLH_family:0.448575120858;HOX{A6,A7,B6,B7}:0.446113826648;ARID5B:0.436525496017;TEF:0.423854716523;POU6F1:0.416505456338;ZNF384:0.415070121405;YY1:0.409360723978;PAX5:0.394416196522;ALX1:0.372021216248;HOX{A4,D4}:0.356509368024;T:0.330492718456;GLI1..3:0.304600611187;ZNF143:0.302232964242;RXRA_VDR{dimer}:0.299843849984;PRRX1,2:0.2729665233;NFIX:0.271822743719;MYOD1:0.270931189815;HAND1,2:0.255169127631;LEF1_TCF7_TCF7L1,2:0.247954998677;BACH2:0.205335644345;NKX3-2:0.175614100781;ESRRA:0.166507007643;FOS_FOS{B,L1}_JUN{B,D}:0.163527532853;MAZ:0.156025926823;SOX17:0.137796667862;GATA4:0.13110579294;CDX1,2,4:0.126203050632;HLF:0.104078911638;PAX8:0.0966472089743;MZF1:0.0904491138898;HIC1:0.0888988670198;MTF1:0.0864717141631;ZBTB6:0.0801400798912;CDC5L:0.0645576336942;GFI1:0.0609942949394;DBP:0.0465034633073;SREBF1,2:0.0410891683709;PDX1:0.0117684206439;XCPE1{core}:0.000113813233304;NFE2:-0.00784210330666;DMAP1_NCOR{1,2}_SMARC:-0.0179311954648;SOX5:-0.0209463811732;PAX2:-0.0407712149958;NFIL3:-0.0460277623231;TFAP2B:-0.0480178412032;HNF1A:-0.0510912610307;ADNP_IRX_SIX_ZHX:-0.0641106287564;CEBPA,B_DDIT3:-0.0724841813159;NR5A1,2:-0.0785739637309;ELF1,2,4:-0.0813315804332;GTF2I:-0.082191673157;NR6A1:-0.0945782037454;SPZ1:-0.10081061831;FOSL2:-0.108029965003;ZNF148:-0.109377761607;AHR_ARNT_ARNT2:-0.116620922696;TLX2:-0.118695543047;SMAD1..7,9:-0.120104118389;FOXP3:-0.1278594665;IRF1,2:-0.141968625014;TFDP1:-0.143725605446;FOXM1:-0.158251786413;TFAP2{A,C}:-0.161111398116;E2F1..5:-0.168275476568;IRF7:-0.169797510588;STAT2,4,6:-0.175131474906;FOXO1,3,4:-0.176413162972;ZFP161:-0.184284093453;SP1:-0.195375374417;MYFfamily:-0.197573799541;PRDM1:-0.208230847965;ZIC1..3:-0.210377553575;RUNX1..3:-0.217972522253;LMO2:-0.218120307472;NR1H4:-0.220241676095;MYB:-0.247425611318;CREB1:-0.279184878095;JUN:-0.280070648808;HNF4A_NR2F1,2:-0.283256212195;FOXN1:-0.30366889179;REST:-0.34123182631;EGR1..3:-0.34711932738;STAT1,3:-0.368730678347;RREB1:-0.372657444644;RFX1:-0.377678200184;PAX6:-0.380084411356;SPI1:-0.39006940556;NFY{A,B,C}:-0.396774329093;IKZF2:-0.40073177307;FOXD3:-0.431227961794;FOXA2:-0.438290141241;FOX{I1,J2}:-0.438590036869;NFKB1_REL_RELA:-0.45712004977;TOPORS:-0.474578187598;PATZ1:-0.475557912675;ETS1,2:-0.486122296612;FOXP1:-0.535037171277;MED-1{core}:-0.536266984882;EP300:-0.549712157808;CRX:-0.568320073709;PITX1..3:-0.583209143162;VSX1,2:-0.583753021378;ZNF423:-0.5901876991;PAX3,7:-0.603744722066;OCT4_SOX2{dimer}:-0.623760231665;SPIB:-0.626315816937;NKX2-3_NKX2-5:-0.626544055357;HOXA9_MEIS1:-0.636004855346;SOX{8,9,10}:-0.687233211121;ATF5_CREB3:-0.688507774512;SNAI1..3:-0.702454677501;RFX2..5_RFXANK_RFXAP:-0.709254531963;NKX6-1,2:-0.718955539992;SOX2:-0.731060675152;BPTF:-0.745728445036;FOX{D1,D2}:-0.765925002381;ATF2:-0.785716610509;ATF4:-0.827636997692;GATA6:-0.836683293753;POU5F1:-0.840045043575;RBPJ:-0.841060682726;CUX2:-0.875454479801;NANOG:-0.917141630032;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.943286262595;BREu{core}:-1.08358530122;POU2F1..3:-1.08688585015;ZEB1:-1.12743331185;FOXQ1:-1.18019171829;FOX{F1,F2,J1}:-1.18481569425;RORA:-1.25503520778;PBX1:-1.32619921356 | |top_motifs=NKX3-1:2.34658123597;FOXL1:1.6833986254;NR3C1:1.65381771102;HMGA1,2:1.45161867784;NKX2-2,8:1.35919552312;EVI1:1.27688861522;HIF1A:1.27185581117;AIRE:1.20648741474;XBP1:1.19991772302;POU3F1..4:1.1922834914;ALX4:1.18143578341;HBP1_HMGB_SSRP1_UBTF:1.16018540484;HSF1,2:1.13642962784;GZF1:1.12007405792;IKZF1:1.10383719303;ZNF238:1.09145631516;TAL1_TCF{3,4,12}:1.08062201792;TEAD1:1.07356348367;SRF:1.05406855792;UFEwm:1.00255782903;HOX{A5,B5}:0.912053929674;TBX4,5:0.909598634328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.902220834589;MAFB:0.881638840257;TBP:0.875198143426;MYBL2:0.833430369202;EBF1:0.77473812988;ELK1,4_GABP{A,B1}:0.751564990856;HES1:0.715679300578;GFI1B:0.71417476744;EN1,2:0.685618215115;NANOG{mouse}:0.679841024261;HMX1:0.678010830463;TFCP2:0.664481385814;TFAP4:0.637719477259;PPARG:0.637616588401;KLF4:0.609737836564;ONECUT1,2:0.593695991353;PAX1,9:0.584742994494;NFE2L1:0.579121026488;ATF6:0.555517517192;MTE{core}:0.545823517364;AR:0.51433161236;LHX3,4:0.507427118644;POU1F1:0.503389288659;PAX4:0.494576952125;TLX1..3_NFIC{dimer}:0.492338785601;RXR{A,B,G}:0.491118127712;NRF1:0.490318076068;ZBTB16:0.485981452808;ESR1:0.483902769886;TP53:0.475835054696;TGIF1:0.471430163487;GTF2A1,2:0.470960752885;NHLH1,2:0.470059075113;MEF2{A,B,C,D}:0.46860301019;STAT5{A,B}:0.460986086711;NKX2-1,4:0.460506903618;NFATC1..3:0.449306382816;GCM1,2:0.44926016843;NFE2L2:0.448793985203;bHLH_family:0.448575120858;HOX{A6,A7,B6,B7}:0.446113826648;ARID5B:0.436525496017;TEF:0.423854716523;POU6F1:0.416505456338;ZNF384:0.415070121405;YY1:0.409360723978;PAX5:0.394416196522;ALX1:0.372021216248;HOX{A4,D4}:0.356509368024;T:0.330492718456;GLI1..3:0.304600611187;ZNF143:0.302232964242;RXRA_VDR{dimer}:0.299843849984;PRRX1,2:0.2729665233;NFIX:0.271822743719;MYOD1:0.270931189815;HAND1,2:0.255169127631;LEF1_TCF7_TCF7L1,2:0.247954998677;BACH2:0.205335644345;NKX3-2:0.175614100781;ESRRA:0.166507007643;FOS_FOS{B,L1}_JUN{B,D}:0.163527532853;MAZ:0.156025926823;SOX17:0.137796667862;GATA4:0.13110579294;CDX1,2,4:0.126203050632;HLF:0.104078911638;PAX8:0.0966472089743;MZF1:0.0904491138898;HIC1:0.0888988670198;MTF1:0.0864717141631;ZBTB6:0.0801400798912;CDC5L:0.0645576336942;GFI1:0.0609942949394;DBP:0.0465034633073;SREBF1,2:0.0410891683709;PDX1:0.0117684206439;XCPE1{core}:0.000113813233304;NFE2:-0.00784210330666;DMAP1_NCOR{1,2}_SMARC:-0.0179311954648;SOX5:-0.0209463811732;PAX2:-0.0407712149958;NFIL3:-0.0460277623231;TFAP2B:-0.0480178412032;HNF1A:-0.0510912610307;ADNP_IRX_SIX_ZHX:-0.0641106287564;CEBPA,B_DDIT3:-0.0724841813159;NR5A1,2:-0.0785739637309;ELF1,2,4:-0.0813315804332;GTF2I:-0.082191673157;NR6A1:-0.0945782037454;SPZ1:-0.10081061831;FOSL2:-0.108029965003;ZNF148:-0.109377761607;AHR_ARNT_ARNT2:-0.116620922696;TLX2:-0.118695543047;SMAD1..7,9:-0.120104118389;FOXP3:-0.1278594665;IRF1,2:-0.141968625014;TFDP1:-0.143725605446;FOXM1:-0.158251786413;TFAP2{A,C}:-0.161111398116;E2F1..5:-0.168275476568;IRF7:-0.169797510588;STAT2,4,6:-0.175131474906;FOXO1,3,4:-0.176413162972;ZFP161:-0.184284093453;SP1:-0.195375374417;MYFfamily:-0.197573799541;PRDM1:-0.208230847965;ZIC1..3:-0.210377553575;RUNX1..3:-0.217972522253;LMO2:-0.218120307472;NR1H4:-0.220241676095;MYB:-0.247425611318;CREB1:-0.279184878095;JUN:-0.280070648808;HNF4A_NR2F1,2:-0.283256212195;FOXN1:-0.30366889179;REST:-0.34123182631;EGR1..3:-0.34711932738;STAT1,3:-0.368730678347;RREB1:-0.372657444644;RFX1:-0.377678200184;PAX6:-0.380084411356;SPI1:-0.39006940556;NFY{A,B,C}:-0.396774329093;IKZF2:-0.40073177307;FOXD3:-0.431227961794;FOXA2:-0.438290141241;FOX{I1,J2}:-0.438590036869;NFKB1_REL_RELA:-0.45712004977;TOPORS:-0.474578187598;PATZ1:-0.475557912675;ETS1,2:-0.486122296612;FOXP1:-0.535037171277;MED-1{core}:-0.536266984882;EP300:-0.549712157808;CRX:-0.568320073709;PITX1..3:-0.583209143162;VSX1,2:-0.583753021378;ZNF423:-0.5901876991;PAX3,7:-0.603744722066;OCT4_SOX2{dimer}:-0.623760231665;SPIB:-0.626315816937;NKX2-3_NKX2-5:-0.626544055357;HOXA9_MEIS1:-0.636004855346;SOX{8,9,10}:-0.687233211121;ATF5_CREB3:-0.688507774512;SNAI1..3:-0.702454677501;RFX2..5_RFXANK_RFXAP:-0.709254531963;NKX6-1,2:-0.718955539992;SOX2:-0.731060675152;BPTF:-0.745728445036;FOX{D1,D2}:-0.765925002381;ATF2:-0.785716610509;ATF4:-0.827636997692;GATA6:-0.836683293753;POU5F1:-0.840045043575;RBPJ:-0.841060682726;CUX2:-0.875454479801;NANOG:-0.917141630032;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.943286262595;BREu{core}:-1.08358530122;POU2F1..3:-1.08688585015;ZEB1:-1.12743331185;FOXQ1:-1.18019171829;FOX{F1,F2,J1}:-1.18481569425;RORA:-1.25503520778;PBX1:-1.32619921356 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11241-116D8;search_select_hide=table117:FF:11241-116D8 | |||
}} | }} | ||
Latest revision as of 16:27, 3 June 2020
| Name: | Myoblast, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10870 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10870
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10870
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.509 |
| 10 | 10 | 0.108 |
| 100 | 100 | 0.755 |
| 101 | 101 | 0.237 |
| 102 | 102 | 0.251 |
| 103 | 103 | 0.106 |
| 104 | 104 | 0.831 |
| 105 | 105 | 0.00303 |
| 106 | 106 | 0.0498 |
| 107 | 107 | 0.815 |
| 108 | 108 | 0.475 |
| 109 | 109 | 0.109 |
| 11 | 11 | 0.613 |
| 110 | 110 | 0.479 |
| 111 | 111 | 0.644 |
| 112 | 112 | 0.629 |
| 113 | 113 | 0.678 |
| 114 | 114 | 0.108 |
| 115 | 115 | 0.354 |
| 116 | 116 | 0.16 |
| 117 | 117 | 0.374 |
| 118 | 118 | 0.579 |
| 119 | 119 | 0.814 |
| 12 | 12 | 0.776 |
| 120 | 120 | 0.23 |
| 121 | 121 | 0.867 |
| 122 | 122 | 0.0529 |
| 123 | 123 | 0.00111 |
| 124 | 124 | 0.0982 |
| 125 | 125 | 0.462 |
| 126 | 126 | 0.867 |
| 127 | 127 | 0.719 |
| 128 | 128 | 0.0956 |
| 129 | 129 | 0.946 |
| 13 | 13 | 0.882 |
| 130 | 130 | 0.462 |
| 131 | 131 | 0.427 |
| 132 | 132 | 0.719 |
| 133 | 133 | 0.0714 |
| 134 | 134 | 0.0176 |
| 135 | 135 | 0.367 |
| 136 | 136 | 0.278 |
| 137 | 137 | 0.377 |
| 138 | 138 | 0.22 |
| 139 | 139 | 0.987 |
| 14 | 14 | 0.0702 |
| 140 | 140 | 0.0764 |
| 141 | 141 | 0.316 |
| 142 | 142 | 0.8 |
| 143 | 143 | 0.556 |
| 144 | 144 | 0.793 |
| 145 | 145 | 0.702 |
| 146 | 146 | 0.572 |
| 147 | 147 | 0.0904 |
| 148 | 148 | 0.754 |
| 149 | 149 | 0.414 |
| 15 | 15 | 0.878 |
| 150 | 150 | 0.894 |
| 151 | 151 | 0.881 |
| 152 | 152 | 0.0688 |
| 153 | 153 | 0.844 |
| 154 | 154 | 0.766 |
| 155 | 155 | 8.49239e-4 |
| 156 | 156 | 0.375 |
| 157 | 157 | 0.0286 |
| 158 | 158 | 0.0205 |
| 159 | 159 | 0.27 |
| 16 | 16 | 0.123 |
| 160 | 160 | 0.746 |
| 161 | 161 | 0.616 |
| 162 | 162 | 0.926 |
| 163 | 163 | 0.391 |
| 164 | 164 | 0.98 |
| 165 | 165 | 0.287 |
| 166 | 166 | 0.724 |
| 167 | 167 | 0.86 |
| 168 | 168 | 0.602 |
| 169 | 169 | 0.159 |
| 17 | 17 | 0.859 |
| 18 | 18 | 0.317 |
| 19 | 19 | 0.16 |
| 2 | 2 | 0.473 |
| 20 | 20 | 0.941 |
| 21 | 21 | 0.0199 |
| 22 | 22 | 0.672 |
| 23 | 23 | 0.956 |
| 24 | 24 | 0.612 |
| 25 | 25 | 0.858 |
| 26 | 26 | 0.682 |
| 27 | 27 | 0.646 |
| 28 | 28 | 0.266 |
| 29 | 29 | 0.593 |
| 3 | 3 | 0.595 |
| 30 | 30 | 0.646 |
| 31 | 31 | 0.601 |
| 32 | 32 | 3.34379e-4 |
| 33 | 33 | 0.877 |
| 34 | 34 | 0.18 |
| 35 | 35 | 0.06 |
| 36 | 36 | 0.00902 |
| 37 | 37 | 0.102 |
| 38 | 38 | 0.587 |
| 39 | 39 | 0.159 |
| 4 | 4 | 0.174 |
| 40 | 40 | 0.0625 |
| 41 | 41 | 0.259 |
| 42 | 42 | 0.591 |
| 43 | 43 | 0.664 |
| 44 | 44 | 0.251 |
| 45 | 45 | 0.105 |
| 46 | 46 | 0.779 |
| 47 | 47 | 0.634 |
| 48 | 48 | 0.65 |
| 49 | 49 | 0.167 |
| 5 | 5 | 0.974 |
| 50 | 50 | 0.408 |
| 51 | 51 | 0.632 |
| 52 | 52 | 0.453 |
| 53 | 53 | 0.0323 |
| 54 | 54 | 0.609 |
| 55 | 55 | 0.344 |
| 56 | 56 | 0.965 |
| 57 | 57 | 0.923 |
| 58 | 58 | 0.147 |
| 59 | 59 | 0.83 |
| 6 | 6 | 0.308 |
| 60 | 60 | 0.233 |
| 61 | 61 | 0.778 |
| 62 | 62 | 0.502 |
| 63 | 63 | 0.447 |
| 64 | 64 | 0.08 |
| 65 | 65 | 0.42 |
| 66 | 66 | 0.557 |
| 67 | 67 | 0.398 |
| 68 | 68 | 0.851 |
| 69 | 69 | 0.497 |
| 7 | 7 | 0.676 |
| 70 | 70 | 0.899 |
| 71 | 71 | 0.359 |
| 72 | 72 | 0.645 |
| 73 | 73 | 0.0024 |
| 74 | 74 | 0.16 |
| 75 | 75 | 0.319 |
| 76 | 76 | 0.92 |
| 77 | 77 | 0.141 |
| 78 | 78 | 0.892 |
| 79 | 79 | 0.465 |
| 8 | 8 | 0.428 |
| 80 | 80 | 0.0952 |
| 81 | 81 | 0.519 |
| 82 | 82 | 0.663 |
| 83 | 83 | 0.632 |
| 84 | 84 | 0.966 |
| 85 | 85 | 0.989 |
| 86 | 86 | 0.919 |
| 87 | 87 | 0.0165 |
| 88 | 88 | 0.545 |
| 89 | 89 | 0.386 |
| 9 | 9 | 0.97 |
| 90 | 90 | 0.636 |
| 91 | 91 | 0.282 |
| 92 | 92 | 0.763 |
| 93 | 93 | 0.975 |
| 94 | 94 | 0.619 |
| 95 | 95 | 0.129 |
| 96 | 96 | 0.697 |
| 97 | 97 | 0.875 |
| 98 | 98 | 0.0905 |
| 99 | 99 | 0.00546 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10870
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)
