FF:11253-116F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005094 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005094 | ||
|accession_numbers=CAGE;DRX008419;DRR009291;DRZ000716;DRZ002101;DRZ012066;DRZ013451 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037140;DRR041506;DRZ007148 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000145 | |||
|comment=Previously: Prostate Epithelial Cells, donor1 | |comment=Previously: Prostate Epithelial Cells, donor1 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11253-116F2 | |id=FF:11253-116F2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000145 | ||
|is_obsolete= | |||
|library_id=CNhs10882 | |||
|library_id_phase_based=2:CNhs10882 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11253 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CCGTCC.11253 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11253 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CCGTCC.11253 | |||
|name=Prostate Epithelial Cells (polarized), donor1 | |name=Prostate Epithelial Cells (polarized), donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10882,LSID703,release008,COMPLETED | |profile_hcage=CNhs10882,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116F2 | |rna_tube_id=116F2 | ||
|rna_weight_ug=96 | |rna_weight_ug=96 | ||
|rnaseq_library_id=SRhi10009.CCGTCC | |||
|sample_age=56 | |sample_age=56 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CS-ABI-3739 | |sample_cell_catalog=CS-ABI-3739 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.49969742536558e-257!GO:0043231;intracellular membrane-bound organelle;2.98514387826765e-218!GO:0043227;membrane-bound organelle;2.98514387826765e-218!GO:0043226;organelle;2.27052038565162e-216!GO:0043229;intracellular organelle;8.59995030201963e-216!GO:0005737;cytoplasm;1.69676262875137e-184!GO:0044422;organelle part;4.8676347770722e-153!GO:0044446;intracellular organelle part;2.57723267610903e-151!GO:0044444;cytoplasmic part;1.03913370436923e-138!GO:0044237;cellular metabolic process;6.83576270456917e-109!GO:0044238;primary metabolic process;7.33471694627642e-108!GO:0032991;macromolecular complex;1.49258585025651e-99!GO:0030529;ribonucleoprotein complex;4.54939987895653e-90!GO:0043170;macromolecule metabolic process;4.56409021852358e-88!GO:0005634;nucleus;9.36992208874385e-88!GO:0003723;RNA binding;5.60802155083228e-82!GO:0044428;nuclear part;1.57044876893394e-81!GO:0043233;organelle lumen;1.93289762902465e-79!GO:0031974;membrane-enclosed lumen;1.93289762902465e-79!GO:0005739;mitochondrion;1.34635340282034e-75!GO:0005515;protein binding;1.64604411762843e-60!GO:0006396;RNA processing;6.79818356489373e-58!GO:0031090;organelle membrane;7.39371101670914e-53!GO:0005840;ribosome;1.27692683170739e-52!GO:0006412;translation;9.09749116826197e-50!GO:0043234;protein complex;2.59151200563892e-48!GO:0019538;protein metabolic process;2.06536945394236e-47!GO:0031981;nuclear lumen;3.53704342186436e-47!GO:0044429;mitochondrial part;3.53704342186436e-47!GO:0043283;biopolymer metabolic process;4.45128609205994e-46!GO:0009058;biosynthetic process;1.06154795425256e-45!GO:0010467;gene expression;6.34443899151919e-45!GO:0031967;organelle envelope;1.14812037464593e-44!GO:0031975;envelope;1.25440485568617e-44!GO:0003735;structural constituent of ribosome;1.49221970567282e-44!GO:0016043;cellular component organization and biogenesis;2.66564430846284e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.68044219637001e-44!GO:0033036;macromolecule localization;4.31156586661963e-44!GO:0015031;protein transport;1.52898237218972e-43!GO:0044249;cellular biosynthetic process;1.21646606211236e-42!GO:0016071;mRNA metabolic process;9.31384870161455e-42!GO:0044267;cellular protein metabolic process;1.6734356304913e-41!GO:0044260;cellular macromolecule metabolic process;4.06881447807274e-41!GO:0008104;protein localization;7.06440407557245e-40!GO:0045184;establishment of protein localization;1.65367428190021e-39!GO:0008380;RNA splicing;7.18097850953854e-38!GO:0009059;macromolecule biosynthetic process;8.69853156398496e-38!GO:0033279;ribosomal subunit;1.58802755762809e-37!GO:0006397;mRNA processing;2.38990815074853e-36!GO:0043228;non-membrane-bound organelle;3.97562596472606e-36!GO:0043232;intracellular non-membrane-bound organelle;3.97562596472606e-36!GO:0005829;cytosol;4.31361714591821e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.02946479733604e-34!GO:0065003;macromolecular complex assembly;1.12937092944297e-34!GO:0046907;intracellular transport;5.12705128199607e-34!GO:0006996;organelle organization and biogenesis;2.53666176550555e-33!GO:0006259;DNA metabolic process;5.01567856532562e-32!GO:0022607;cellular component assembly;1.47021604654907e-30!GO:0006886;intracellular protein transport;1.3805916506923e-29!GO:0003676;nucleic acid binding;4.05368759603331e-29!GO:0005740;mitochondrial envelope;4.68354734284723e-29!GO:0007049;cell cycle;1.04071388146807e-28!GO:0019866;organelle inner membrane;2.57048827137123e-28!GO:0005681;spliceosome;8.36982798693736e-28!GO:0031966;mitochondrial membrane;2.4330523057306e-27!GO:0005654;nucleoplasm;7.32564747401563e-27!GO:0005743;mitochondrial inner membrane;4.39569563216346e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.15765778974013e-26!GO:0012505;endomembrane system;2.42467339484442e-23!GO:0044451;nucleoplasm part;2.09713786937549e-22!GO:0000166;nucleotide binding;2.81324691426638e-22!GO:0006119;oxidative phosphorylation;3.55076620392055e-22!GO:0051641;cellular localization;7.16675681972208e-22!GO:0051649;establishment of cellular localization;7.22430988088703e-22!GO:0031980;mitochondrial lumen;7.36434643174243e-22!GO:0005759;mitochondrial matrix;7.36434643174243e-22!GO:0006974;response to DNA damage stimulus;5.47228642230818e-21!GO:0005783;endoplasmic reticulum;5.59460092209321e-21!GO:0016070;RNA metabolic process;6.36478887160923e-21!GO:0022402;cell cycle process;6.36527852469696e-21!GO:0005730;nucleolus;2.18845400374439e-20!GO:0015935;small ribosomal subunit;1.16945889303102e-19!GO:0000278;mitotic cell cycle;1.48983259998131e-19!GO:0044445;cytosolic part;1.77676531531939e-19!GO:0016462;pyrophosphatase activity;2.50396892022633e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.02584795982396e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.89926282852036e-19!GO:0044455;mitochondrial membrane part;6.38232464959925e-19!GO:0017111;nucleoside-triphosphatase activity;6.75268429496617e-19!GO:0015934;large ribosomal subunit;7.44587275236308e-19!GO:0005694;chromosome;7.82620599981112e-19!GO:0044248;cellular catabolic process;8.95636683735771e-19!GO:0016874;ligase activity;2.34538630842685e-18!GO:0022618;protein-RNA complex assembly;2.38014886396598e-18!GO:0044432;endoplasmic reticulum part;5.01567721490069e-18!GO:0044265;cellular macromolecule catabolic process;6.41173116437598e-18!GO:0006457;protein folding;1.59402891883889e-17!GO:0006281;DNA repair;1.76237068720999e-17!GO:0051186;cofactor metabolic process;3.22569999323115e-17!GO:0042254;ribosome biogenesis and assembly;3.29441419339748e-17!GO:0044427;chromosomal part;1.72730675699208e-16!GO:0009719;response to endogenous stimulus;1.80722681946901e-16!GO:0048770;pigment granule;1.85313261754367e-16!GO:0042470;melanosome;1.85313261754367e-16!GO:0043285;biopolymer catabolic process;3.70374604520634e-16!GO:0005761;mitochondrial ribosome;4.69320323590964e-16!GO:0000313;organellar ribosome;4.69320323590964e-16!GO:0005635;nuclear envelope;5.08583155781438e-16!GO:0009057;macromolecule catabolic process;5.66166815136723e-16!GO:0000502;proteasome complex (sensu Eukaryota);6.97895848073438e-16!GO:0005746;mitochondrial respiratory chain;7.92793101094814e-16!GO:0022403;cell cycle phase;1.26093931411129e-15!GO:0006512;ubiquitin cycle;1.34865191633916e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.40029316365119e-15!GO:0031965;nuclear membrane;1.40029316365119e-15!GO:0006732;coenzyme metabolic process;2.4720774414658e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.47304067401982e-15!GO:0006605;protein targeting;2.5517879767501e-15!GO:0008135;translation factor activity, nucleic acid binding;2.84267015083019e-15!GO:0006260;DNA replication;2.84543299124938e-15!GO:0044453;nuclear membrane part;4.11510669420946e-15!GO:0044257;cellular protein catabolic process;4.29495786551847e-15!GO:0019941;modification-dependent protein catabolic process;5.02022238689529e-15!GO:0043632;modification-dependent macromolecule catabolic process;5.02022238689529e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.47880883886798e-15!GO:0032553;ribonucleotide binding;7.35659778206006e-15!GO:0032555;purine ribonucleotide binding;7.35659778206006e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.08726304669234e-14!GO:0003954;NADH dehydrogenase activity;1.08726304669234e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.08726304669234e-14!GO:0017076;purine nucleotide binding;1.76407356183272e-14!GO:0051276;chromosome organization and biogenesis;3.19690483093746e-14!GO:0042623;ATPase activity, coupled;4.1291718080438e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.6229412621042e-14!GO:0000375;RNA splicing, via transesterification reactions;4.6229412621042e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.6229412621042e-14!GO:0030163;protein catabolic process;6.65271452128763e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.97081979947352e-14!GO:0016887;ATPase activity;8.63983821868149e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17515962676281e-13!GO:0051301;cell division;1.243849491673e-13!GO:0000087;M phase of mitotic cell cycle;1.39381924683986e-13!GO:0051082;unfolded protein binding;1.5931543289269e-13!GO:0005789;endoplasmic reticulum membrane;1.66987525462463e-13!GO:0007067;mitosis;2.14964855869051e-13!GO:0009056;catabolic process;2.3457624617195e-13!GO:0005643;nuclear pore;2.93956639935603e-13!GO:0008134;transcription factor binding;3.03810099448767e-13!GO:0005794;Golgi apparatus;3.04285390338856e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.85992501458709e-13!GO:0042773;ATP synthesis coupled electron transport;6.85992501458709e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.00104563420381e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.03526749226297e-12!GO:0045271;respiratory chain complex I;1.03526749226297e-12!GO:0005747;mitochondrial respiratory chain complex I;1.03526749226297e-12!GO:0016604;nuclear body;1.19033005028626e-12!GO:0065002;intracellular protein transport across a membrane;1.20548392314836e-12!GO:0032559;adenyl ribonucleotide binding;1.5640987801941e-12!GO:0005524;ATP binding;1.6438619589979e-12!GO:0006403;RNA localization;2.0123002212367e-12!GO:0050657;nucleic acid transport;2.02273301697841e-12!GO:0051236;establishment of RNA localization;2.02273301697841e-12!GO:0050658;RNA transport;2.02273301697841e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.55392481464984e-12!GO:0016192;vesicle-mediated transport;2.81774112812931e-12!GO:0006399;tRNA metabolic process;4.27362618762918e-12!GO:0030554;adenyl nucleotide binding;5.29869802402229e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.36536155586932e-12!GO:0000279;M phase;1.18094049459398e-11!GO:0048193;Golgi vesicle transport;1.43498487110707e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.6027825034986e-11!GO:0009055;electron carrier activity;1.70965511954381e-11!GO:0006461;protein complex assembly;2.35648340931644e-11!GO:0003743;translation initiation factor activity;2.52468351601562e-11!GO:0006364;rRNA processing;2.97204295101995e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;3.45888987986682e-11!GO:0006413;translational initiation;3.74118028847128e-11!GO:0008565;protein transporter activity;3.96148086197596e-11!GO:0016072;rRNA metabolic process;4.33967372061091e-11!GO:0004386;helicase activity;4.38673256281684e-11!GO:0046930;pore complex;4.78943753859379e-11!GO:0051726;regulation of cell cycle;5.23277333404597e-11!GO:0006446;regulation of translational initiation;5.63500274320557e-11!GO:0006913;nucleocytoplasmic transport;6.48679549735054e-11!GO:0000074;regulation of progression through cell cycle;1.08513297345371e-10!GO:0006323;DNA packaging;1.1925068486127e-10!GO:0051169;nuclear transport;1.1925068486127e-10!GO:0016607;nuclear speck;1.66084413211799e-10!GO:0043412;biopolymer modification;1.73358779035911e-10!GO:0051028;mRNA transport;1.95009719847234e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.98990483231782e-10!GO:0008026;ATP-dependent helicase activity;7.80063010007066e-10!GO:0005793;ER-Golgi intermediate compartment;9.07295116117855e-10!GO:0006366;transcription from RNA polymerase II promoter;1.53753710640016e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.69851060950297e-09!GO:0000785;chromatin;1.95724463561139e-09!GO:0006915;apoptosis;2.87152103963233e-09!GO:0012501;programmed cell death;3.10065785938014e-09!GO:0009259;ribonucleotide metabolic process;4.5817911970745e-09!GO:0030532;small nuclear ribonucleoprotein complex;5.03511655202279e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.04636710328596e-09!GO:0006464;protein modification process;8.61898771671706e-09!GO:0006163;purine nucleotide metabolic process;8.72755390805377e-09!GO:0009060;aerobic respiration;1.31593354054373e-08!GO:0015986;ATP synthesis coupled proton transport;1.39225607891233e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.39225607891233e-08!GO:0006333;chromatin assembly or disassembly;1.53163284975867e-08!GO:0008219;cell death;1.87609424096183e-08!GO:0016265;death;1.87609424096183e-08!GO:0051329;interphase of mitotic cell cycle;2.51335144059405e-08!GO:0065004;protein-DNA complex assembly;2.68277448520837e-08!GO:0051188;cofactor biosynthetic process;3.24509038657428e-08!GO:0019829;cation-transporting ATPase activity;3.95518440504091e-08!GO:0016779;nucleotidyltransferase activity;4.02145894134471e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.56935241776482e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.56935241776482e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.56935241776482e-08!GO:0009150;purine ribonucleotide metabolic process;4.6937198098359e-08!GO:0017038;protein import;4.7909871318607e-08!GO:0016491;oxidoreductase activity;4.79897331310867e-08!GO:0006164;purine nucleotide biosynthetic process;5.70139314778092e-08!GO:0008639;small protein conjugating enzyme activity;5.7236438257298e-08!GO:0016787;hydrolase activity;7.50498126594433e-08!GO:0009260;ribonucleotide biosynthetic process;7.92551625545521e-08!GO:0045333;cellular respiration;8.43211667604378e-08!GO:0043687;post-translational protein modification;9.39607300639074e-08!GO:0004842;ubiquitin-protein ligase activity;1.09605861341006e-07!GO:0019787;small conjugating protein ligase activity;1.13442598075193e-07!GO:0043038;amino acid activation;1.15251906978096e-07!GO:0006418;tRNA aminoacylation for protein translation;1.15251906978096e-07!GO:0043039;tRNA aminoacylation;1.15251906978096e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.40197661325991e-07!GO:0016740;transferase activity;1.48851445519428e-07!GO:0006261;DNA-dependent DNA replication;1.57260642629156e-07!GO:0046034;ATP metabolic process;1.63551004984188e-07!GO:0050794;regulation of cellular process;1.70595883120335e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.01755104216221e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.06727714302587e-07!GO:0003712;transcription cofactor activity;2.12280358944638e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.16324911053037e-07!GO:0051325;interphase;2.23375690721387e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.27250532004702e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.27250532004702e-07!GO:0006754;ATP biosynthetic process;2.28380165570115e-07!GO:0006753;nucleoside phosphate metabolic process;2.28380165570115e-07!GO:0009141;nucleoside triphosphate metabolic process;2.50207727458187e-07!GO:0009108;coenzyme biosynthetic process;2.63654377654478e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.86223736649035e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.86223736649035e-07!GO:0006099;tricarboxylic acid cycle;2.94341965096017e-07!GO:0046356;acetyl-CoA catabolic process;2.94341965096017e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.94341965096017e-07!GO:0051246;regulation of protein metabolic process;3.25179275491195e-07!GO:0031988;membrane-bound vesicle;3.55195290742085e-07!GO:0006084;acetyl-CoA metabolic process;3.60353451867924e-07!GO:0006752;group transfer coenzyme metabolic process;4.12916298230611e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.73857452424849e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.73857452424849e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.56865829845771e-07!GO:0005768;endosome;5.56865829845771e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.64768503689419e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.67235730614803e-07!GO:0016568;chromatin modification;5.84823613032657e-07!GO:0031982;vesicle;6.34218615805839e-07!GO:0000245;spliceosome assembly;7.00475133534137e-07!GO:0016881;acid-amino acid ligase activity;9.19563416121312e-07!GO:0003697;single-stranded DNA binding;9.67146003949626e-07!GO:0043623;cellular protein complex assembly;1.05728369668392e-06!GO:0031410;cytoplasmic vesicle;1.11915946892434e-06!GO:0043566;structure-specific DNA binding;1.14337454854368e-06!GO:0007005;mitochondrion organization and biogenesis;1.16261897524899e-06!GO:0005667;transcription factor complex;1.22342604133709e-06!GO:0048475;coated membrane;1.29368705214876e-06!GO:0030117;membrane coat;1.29368705214876e-06!GO:0051187;cofactor catabolic process;1.57989839909658e-06!GO:0005657;replication fork;2.04814196959486e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.27892094170467e-06!GO:0009109;coenzyme catabolic process;2.29669241147026e-06!GO:0042981;regulation of apoptosis;2.76392426366088e-06!GO:0009117;nucleotide metabolic process;3.27578530781706e-06!GO:0030120;vesicle coat;3.61322548914707e-06!GO:0030662;coated vesicle membrane;3.61322548914707e-06!GO:0045259;proton-transporting ATP synthase complex;3.92013738554559e-06!GO:0005773;vacuole;4.21349561499789e-06!GO:0043067;regulation of programmed cell death;4.28887382895597e-06!GO:0006613;cotranslational protein targeting to membrane;4.62404060819631e-06!GO:0003724;RNA helicase activity;4.86140617360467e-06!GO:0003899;DNA-directed RNA polymerase activity;5.11683618248093e-06!GO:0005762;mitochondrial large ribosomal subunit;5.67636620403679e-06!GO:0000315;organellar large ribosomal subunit;5.67636620403679e-06!GO:0016853;isomerase activity;5.83619719965321e-06!GO:0005788;endoplasmic reticulum lumen;6.4991010428427e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.54314018476348e-06!GO:0000775;chromosome, pericentric region;7.94628947090947e-06!GO:0032446;protein modification by small protein conjugation;8.21702388129731e-06!GO:0031497;chromatin assembly;1.12264665781603e-05!GO:0006082;organic acid metabolic process;1.17957465989276e-05!GO:0006334;nucleosome assembly;1.18207128421551e-05!GO:0019752;carboxylic acid metabolic process;1.20147209222228e-05!GO:0016567;protein ubiquitination;1.23460835582606e-05!GO:0051168;nuclear export;1.47163214373085e-05!GO:0015630;microtubule cytoskeleton;1.52606217353462e-05!GO:0051170;nuclear import;1.59877007411435e-05!GO:0008654;phospholipid biosynthetic process;1.66891258639366e-05!GO:0005770;late endosome;1.79003360853777e-05!GO:0044452;nucleolar part;1.87737596294492e-05!GO:0008033;tRNA processing;1.96900586815614e-05!GO:0043021;ribonucleoprotein binding;2.28610275742027e-05!GO:0008094;DNA-dependent ATPase activity;2.6661999619112e-05!GO:0007051;spindle organization and biogenesis;2.72940652677648e-05!GO:0004298;threonine endopeptidase activity;2.83337503899604e-05!GO:0043069;negative regulation of programmed cell death;2.93630549227596e-05!GO:0016126;sterol biosynthetic process;3.00741684658422e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.13669999674194e-05!GO:0048523;negative regulation of cellular process;3.33318062184763e-05!GO:0044440;endosomal part;3.63351457544559e-05!GO:0010008;endosome membrane;3.63351457544559e-05!GO:0006695;cholesterol biosynthetic process;3.63703798075e-05!GO:0043066;negative regulation of apoptosis;3.81898803009683e-05!GO:0006606;protein import into nucleus;4.84242284621068e-05!GO:0044431;Golgi apparatus part;4.95204526532594e-05!GO:0000314;organellar small ribosomal subunit;5.25503249431996e-05!GO:0005763;mitochondrial small ribosomal subunit;5.25503249431996e-05!GO:0005819;spindle;5.52277547477056e-05!GO:0000323;lytic vacuole;5.65484066530177e-05!GO:0005764;lysosome;5.65484066530177e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;5.90337452384395e-05!GO:0051427;hormone receptor binding;6.75882897364723e-05!GO:0019222;regulation of metabolic process;7.4389050518658e-05!GO:0005048;signal sequence binding;7.82193792391317e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.82193792391317e-05!GO:0015399;primary active transmembrane transporter activity;7.82193792391317e-05!GO:0005525;GTP binding;8.09641894767892e-05!GO:0000075;cell cycle checkpoint;8.1801314788489e-05!GO:0006626;protein targeting to mitochondrion;8.38257942888911e-05!GO:0006793;phosphorus metabolic process;8.96501667781616e-05!GO:0006796;phosphate metabolic process;8.96501667781616e-05!GO:0045454;cell redox homeostasis;9.3832813896004e-05!GO:0045786;negative regulation of progression through cell cycle;9.39007607839234e-05!GO:0050789;regulation of biological process;0.000105987608118897!GO:0016363;nuclear matrix;0.000113996506919943!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000115491323576525!GO:0043681;protein import into mitochondrion;0.000125023636563951!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000131017717120753!GO:0035257;nuclear hormone receptor binding;0.000139983396705734!GO:0016741;transferase activity, transferring one-carbon groups;0.000150694234367032!GO:0008610;lipid biosynthetic process;0.000154350550616954!GO:0008168;methyltransferase activity;0.000162730489303105!GO:0003924;GTPase activity;0.000162730489303105!GO:0006302;double-strand break repair;0.000162730489303105!GO:0006091;generation of precursor metabolites and energy;0.000175219996214576!GO:0050662;coenzyme binding;0.000184447412792182!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000196206076307973!GO:0048037;cofactor binding;0.00021021658252263!GO:0008186;RNA-dependent ATPase activity;0.00021021658252263!GO:0016563;transcription activator activity;0.000259208038046554!GO:0006612;protein targeting to membrane;0.000277110510160645!GO:0003713;transcription coactivator activity;0.000284350658636587!GO:0016859;cis-trans isomerase activity;0.000286620475881724!GO:0006402;mRNA catabolic process;0.000303803321326302!GO:0044255;cellular lipid metabolic process;0.000304633976840077!GO:0000151;ubiquitin ligase complex;0.000316738358913564!GO:0005798;Golgi-associated vesicle;0.000319525338826607!GO:0030867;rough endoplasmic reticulum membrane;0.000347515284363614!GO:0000059;protein import into nucleus, docking;0.000357965846678807!GO:0006916;anti-apoptosis;0.000374254538327048!GO:0005815;microtubule organizing center;0.00038380096163159!GO:0000776;kinetochore;0.000415379288660307!GO:0006520;amino acid metabolic process;0.000415379288660307!GO:0005813;centrosome;0.000417445692256622!GO:0032508;DNA duplex unwinding;0.000436913371075781!GO:0032392;DNA geometric change;0.000436913371075781!GO:0016310;phosphorylation;0.000436913371075781!GO:0000082;G1/S transition of mitotic cell cycle;0.000446655412902109!GO:0048519;negative regulation of biological process;0.000461840028395681!GO:0006401;RNA catabolic process;0.000531937781243811!GO:0031252;leading edge;0.000541277470489217!GO:0051252;regulation of RNA metabolic process;0.000548160726597325!GO:0031968;organelle outer membrane;0.000553583483788686!GO:0003690;double-stranded DNA binding;0.000556287918346365!GO:0003682;chromatin binding;0.000557191253659762!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000564482294624123!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00058322225510609!GO:0051789;response to protein stimulus;0.000585979617811178!GO:0006986;response to unfolded protein;0.000585979617811178!GO:0051052;regulation of DNA metabolic process;0.000608542584646254!GO:0004004;ATP-dependent RNA helicase activity;0.000618149461684893!GO:0005885;Arp2/3 protein complex;0.000636557662331361!GO:0030880;RNA polymerase complex;0.00066306898916052!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000713272532132177!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000813922076981486!GO:0032561;guanyl ribonucleotide binding;0.000816235535793912!GO:0019001;guanyl nucleotide binding;0.000816235535793912!GO:0042802;identical protein binding;0.000816235535793912!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000820599937912307!GO:0006950;response to stress;0.000844998786845855!GO:0051920;peroxiredoxin activity;0.000847625386508711!GO:0003729;mRNA binding;0.00087464759767812!GO:0006839;mitochondrial transport;0.000888161068846823!GO:0015980;energy derivation by oxidation of organic compounds;0.000890898347306548!GO:0006414;translational elongation;0.000902312007938897!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000903162408629929!GO:0031324;negative regulation of cellular metabolic process;0.000910385838850747!GO:0048471;perinuclear region of cytoplasm;0.000928460948563066!GO:0019867;outer membrane;0.000928460948563066!GO:0005769;early endosome;0.000999750111230157!GO:0033116;ER-Golgi intermediate compartment membrane;0.00101146555757709!GO:0005791;rough endoplasmic reticulum;0.00109506147616566!GO:0006268;DNA unwinding during replication;0.00111145093108984!GO:0003678;DNA helicase activity;0.00111164462997251!GO:0005684;U2-dependent spliceosome;0.00111164462997251!GO:0000139;Golgi membrane;0.00114714011018134!GO:0006629;lipid metabolic process;0.00115058555226145!GO:0005905;coated pit;0.001180614394839!GO:0009165;nucleotide biosynthetic process;0.001180614394839!GO:0043492;ATPase activity, coupled to movement of substances;0.00120098223925136!GO:0019899;enzyme binding;0.00121743653398791!GO:0019843;rRNA binding;0.00122334400488627!GO:0006405;RNA export from nucleus;0.00125025154584231!GO:0051287;NAD binding;0.00125856013239725!GO:0007010;cytoskeleton organization and biogenesis;0.00126798801108763!GO:0006807;nitrogen compound metabolic process;0.00126798801108763!GO:0048500;signal recognition particle;0.00126798801108763!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00127755422036027!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00127755422036027!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00127755422036027!GO:0005741;mitochondrial outer membrane;0.00132004174510894!GO:0000049;tRNA binding;0.00132004174510894!GO:0006519;amino acid and derivative metabolic process;0.00137268952601142!GO:0016564;transcription repressor activity;0.00143455226745213!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00144900179220128!GO:0000428;DNA-directed RNA polymerase complex;0.00144900179220128!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0014818274717529!GO:0009892;negative regulation of metabolic process;0.00153065258538714!GO:0015992;proton transport;0.00155730819973561!GO:0030036;actin cytoskeleton organization and biogenesis;0.00160669522106472!GO:0006818;hydrogen transport;0.00161527362111982!GO:0004527;exonuclease activity;0.00163393726791835!GO:0016125;sterol metabolic process;0.00163604939979677!GO:0030118;clathrin coat;0.00164246773250328!GO:0009308;amine metabolic process;0.00164890531897133!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00184357506254916!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0018442749612087!GO:0046483;heterocycle metabolic process;0.00192364819346653!GO:0006383;transcription from RNA polymerase III promoter;0.00200034149868476!GO:0046474;glycerophospholipid biosynthetic process;0.00205283495540212!GO:0008312;7S RNA binding;0.0020643636553867!GO:0043488;regulation of mRNA stability;0.00220880543878173!GO:0043487;regulation of RNA stability;0.00220880543878173!GO:0044262;cellular carbohydrate metabolic process;0.00222048151394149!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00227168694288744!GO:0006979;response to oxidative stress;0.00239123439665632!GO:0006891;intra-Golgi vesicle-mediated transport;0.00239748168034861!GO:0016044;membrane organization and biogenesis;0.00240365475381083!GO:0030133;transport vesicle;0.00251453258933478!GO:0006352;transcription initiation;0.00251453258933478!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00251453258933478!GO:0048487;beta-tubulin binding;0.00266318985656989!GO:0007088;regulation of mitosis;0.00267291242545042!GO:0006611;protein export from nucleus;0.00288864898960395!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00289111205018523!GO:0003702;RNA polymerase II transcription factor activity;0.00297875598013011!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00308415782101785!GO:0045047;protein targeting to ER;0.00308415782101785!GO:0005637;nuclear inner membrane;0.00312040553223815!GO:0031323;regulation of cellular metabolic process;0.00312318978176107!GO:0007264;small GTPase mediated signal transduction;0.00334545293813171!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00341204584785356!GO:0003714;transcription corepressor activity;0.0036175093496552!GO:0004576;oligosaccharyl transferase activity;0.00374739380727967!GO:0006650;glycerophospholipid metabolic process;0.00382206356965995!GO:0000786;nucleosome;0.00383077240074434!GO:0006595;polyamine metabolic process;0.00384872080589518!GO:0022890;inorganic cation transmembrane transporter activity;0.00388986536569555!GO:0046467;membrane lipid biosynthetic process;0.00400034608847706!GO:0031124;mRNA 3'-end processing;0.00402613341349387!GO:0016408;C-acyltransferase activity;0.00409052345356343!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00430491199833154!GO:0005758;mitochondrial intermembrane space;0.00435727059873425!GO:0042393;histone binding;0.00436003758643315!GO:0008139;nuclear localization sequence binding;0.00438231022428632!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00446217457017215!GO:0030119;AP-type membrane coat adaptor complex;0.0045783979381513!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00461836935273092!GO:0007017;microtubule-based process;0.0047602160965701!GO:0016272;prefoldin complex;0.00488363673800169!GO:0007093;mitotic cell cycle checkpoint;0.00491644973866804!GO:0065009;regulation of a molecular function;0.0049502151826!GO:0003684;damaged DNA binding;0.00507747051689047!GO:0007059;chromosome segregation;0.00508133369993884!GO:0006643;membrane lipid metabolic process;0.00519641089576758!GO:0006066;alcohol metabolic process;0.00521260602083764!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00526665159382038!GO:0006338;chromatin remodeling;0.00535938336211709!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00539776757078167!GO:0008250;oligosaccharyl transferase complex;0.00550323576926427!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00560138442580196!GO:0043022;ribosome binding;0.00570001600704703!GO:0030176;integral to endoplasmic reticulum membrane;0.00576631320152507!GO:0003746;translation elongation factor activity;0.00576631320152507!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00577980838859933!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00577980838859933!GO:0009112;nucleobase metabolic process;0.00581103959034348!GO:0007052;mitotic spindle organization and biogenesis;0.0060419364320135!GO:0046489;phosphoinositide biosynthetic process;0.0060419364320135!GO:0033673;negative regulation of kinase activity;0.0060419364320135!GO:0006469;negative regulation of protein kinase activity;0.0060419364320135!GO:0030658;transport vesicle membrane;0.00604909389219957!GO:0051539;4 iron, 4 sulfur cluster binding;0.00608984307237588!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00618200289955861!GO:0030131;clathrin adaptor complex;0.00647225536522234!GO:0016197;endosome transport;0.00653105051163255!GO:0031072;heat shock protein binding;0.00657853616908751!GO:0016251;general RNA polymerase II transcription factor activity;0.00661411380516255!GO:0009451;RNA modification;0.00684343222226942!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00691200610803856!GO:0030659;cytoplasmic vesicle membrane;0.00693534320776009!GO:0006417;regulation of translation;0.00697533863611809!GO:0006310;DNA recombination;0.00697533863611809!GO:0050750;low-density lipoprotein receptor binding;0.00705294952656359!GO:0008234;cysteine-type peptidase activity;0.00733782496617623!GO:0035258;steroid hormone receptor binding;0.00740176090309456!GO:0009303;rRNA transcription;0.0074682862471772!GO:0030029;actin filament-based process;0.00765525374059021!GO:0016584;nucleosome positioning;0.0077756976737002!GO:0012506;vesicle membrane;0.00789007795754146!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00789007795754146!GO:0004518;nuclease activity;0.00794375500309352!GO:0031970;organelle envelope lumen;0.00809367380236684!GO:0006749;glutathione metabolic process;0.00851455656821696!GO:0000086;G2/M transition of mitotic cell cycle;0.00878449888392674!GO:0044433;cytoplasmic vesicle part;0.00887221522883706!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00896453355530582!GO:0051348;negative regulation of transferase activity;0.00904989837369957!GO:0043596;nuclear replication fork;0.00915784412497974!GO:0008203;cholesterol metabolic process;0.00917784144652201!GO:0005832;chaperonin-containing T-complex;0.00918708173743945!GO:0006144;purine base metabolic process;0.00921047946454687!GO:0006270;DNA replication initiation;0.00953899147473523!GO:0051087;chaperone binding;0.00953899147473523!GO:0030663;COPI coated vesicle membrane;0.00953899147473523!GO:0030126;COPI vesicle coat;0.00953899147473523!GO:0008629;induction of apoptosis by intracellular signals;0.00962780267337942!GO:0008652;amino acid biosynthetic process;0.00980428882367932!GO:0006596;polyamine biosynthetic process;0.0106592988909346!GO:0051017;actin filament bundle formation;0.0107289489052391!GO:0008022;protein C-terminus binding;0.0107710726281874!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0111480695750175!GO:0000178;exosome (RNase complex);0.0112996976514981!GO:0006769;nicotinamide metabolic process;0.0114765468712727!GO:0030134;ER to Golgi transport vesicle;0.0114765468712727!GO:0006275;regulation of DNA replication;0.0115349065793312!GO:0000228;nuclear chromosome;0.0116211780478163!GO:0001701;in utero embryonic development;0.0116211780478163!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0117967094720333!GO:0031123;RNA 3'-end processing;0.0122711022955832!GO:0005777;peroxisome;0.0125932003919083!GO:0042579;microbody;0.0125932003919083!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0129280074629885!GO:0005774;vacuolar membrane;0.0129280074629885!GO:0001889;liver development;0.013545008658906!GO:0006767;water-soluble vitamin metabolic process;0.0144327743337618!GO:0043407;negative regulation of MAP kinase activity;0.0144951682606619!GO:0005874;microtubule;0.0145560580937751!GO:0004532;exoribonuclease activity;0.0145633277770356!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0145633277770356!GO:0007021;tubulin folding;0.0147615070060035!GO:0006350;transcription;0.0150046241973733!GO:0007006;mitochondrial membrane organization and biogenesis;0.0153107882726255!GO:0006644;phospholipid metabolic process;0.0153548193893956!GO:0007040;lysosome organization and biogenesis;0.0156924949771495!GO:0018196;peptidyl-asparagine modification;0.0158761597349054!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0158761597349054!GO:0030132;clathrin coat of coated pit;0.0162479847919809!GO:0051101;regulation of DNA binding;0.0164690764257633!GO:0051716;cellular response to stimulus;0.0166775226341114!GO:0008408;3'-5' exonuclease activity;0.0166875264956398!GO:0031647;regulation of protein stability;0.0166875264956398!GO:0042770;DNA damage response, signal transduction;0.0167253101014305!GO:0030660;Golgi-associated vesicle membrane;0.0167449815434289!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0168365239988757!GO:0000922;spindle pole;0.0168428979550465!GO:0006378;mRNA polyadenylation;0.0168431638226266!GO:0008092;cytoskeletal protein binding;0.0171436746930745!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0175087428864528!GO:0008286;insulin receptor signaling pathway;0.0183039475722637!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0183956458838642!GO:0051053;negative regulation of DNA metabolic process;0.0184065613841655!GO:0008299;isoprenoid biosynthetic process;0.0185975858083616!GO:0007015;actin filament organization;0.0187833133309354!GO:0040029;regulation of gene expression, epigenetic;0.018786375257233!GO:0009116;nucleoside metabolic process;0.0188125831045491!GO:0030521;androgen receptor signaling pathway;0.0190909701336994!GO:0006739;NADP metabolic process;0.0195449784253211!GO:0006400;tRNA modification;0.0196772288384514!GO:0050749;apolipoprotein E receptor binding;0.0198367884153877!GO:0030127;COPII vesicle coat;0.0198462401839568!GO:0012507;ER to Golgi transport vesicle membrane;0.0198462401839568!GO:0008538;proteasome activator activity;0.0199930782293064!GO:0007033;vacuole organization and biogenesis;0.020388395544434!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0207428899784894!GO:0000209;protein polyubiquitination;0.021086668936464!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.021086668936464!GO:0015002;heme-copper terminal oxidase activity;0.021086668936464!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.021086668936464!GO:0004129;cytochrome-c oxidase activity;0.021086668936464!GO:0016407;acetyltransferase activity;0.0211358552724772!GO:0006376;mRNA splice site selection;0.0211820799915889!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0211820799915889!GO:0031326;regulation of cellular biosynthetic process;0.02164191834046!GO:0046128;purine ribonucleoside metabolic process;0.0217725110782544!GO:0042278;purine nucleoside metabolic process;0.0217725110782544!GO:0030027;lamellipodium;0.0218108640464856!GO:0004185;serine carboxypeptidase activity;0.0219093820151286!GO:0006007;glucose catabolic process;0.0221218744956565!GO:0008097;5S rRNA binding;0.0226837349009295!GO:0043624;cellular protein complex disassembly;0.0228437402634237!GO:0003756;protein disulfide isomerase activity;0.0228437402634237!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0228437402634237!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0228780528325666!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0235895387415594!GO:0055083;monovalent inorganic anion homeostasis;0.0235895387415594!GO:0055064;chloride ion homeostasis;0.0235895387415594!GO:0030644;cellular chloride ion homeostasis;0.0235895387415594!GO:0015631;tubulin binding;0.0235895387415594!GO:0006672;ceramide metabolic process;0.0235957723141111!GO:0051098;regulation of binding;0.0235957723141111!GO:0005732;small nucleolar ribonucleoprotein complex;0.0235957723141111!GO:0030137;COPI-coated vesicle;0.0238326287459618!GO:0046983;protein dimerization activity;0.0241961508164894!GO:0004003;ATP-dependent DNA helicase activity;0.0242251681306578!GO:0043189;H4/H2A histone acetyltransferase complex;0.0251424893437466!GO:0006541;glutamine metabolic process;0.025373080522137!GO:0008180;signalosome;0.025373080522137!GO:0045893;positive regulation of transcription, DNA-dependent;0.0254856027656091!GO:0001726;ruffle;0.0261116976427692!GO:0043601;nuclear replisome;0.0261444546418407!GO:0030894;replisome;0.0261444546418407!GO:0046519;sphingoid metabolic process;0.026251403521474!GO:0009889;regulation of biosynthetic process;0.0266735426702293!GO:0031902;late endosome membrane;0.0268652499123081!GO:0008144;drug binding;0.0276464746117207!GO:0051258;protein polymerization;0.0276464746117207!GO:0001824;blastocyst development;0.027700414825966!GO:0048522;positive regulation of cellular process;0.0279464141121577!GO:0022884;macromolecule transmembrane transporter activity;0.0284527230393437!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0284527230393437!GO:0003923;GPI-anchor transamidase activity;0.0284527230393437!GO:0016255;attachment of GPI anchor to protein;0.0284527230393437!GO:0042765;GPI-anchor transamidase complex;0.0284527230393437!GO:0004177;aminopeptidase activity;0.028556535544684!GO:0006740;NADPH regeneration;0.0286966649222758!GO:0006098;pentose-phosphate shunt;0.0286966649222758!GO:0051540;metal cluster binding;0.0287461691846305!GO:0051536;iron-sulfur cluster binding;0.0287461691846305!GO:0065007;biological regulation;0.0287771340887103!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0294571410372526!GO:0051338;regulation of transferase activity;0.0294939239200168!GO:0045941;positive regulation of transcription;0.0297743323076552!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0298231743025072!GO:0010468;regulation of gene expression;0.0299234091417182!GO:0000123;histone acetyltransferase complex;0.0299347610918452!GO:0005876;spindle microtubule;0.0299347610918452!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0300529408563892!GO:0006518;peptide metabolic process;0.0303612193854285!GO:0005663;DNA replication factor C complex;0.0303612193854285!GO:0044437;vacuolar part;0.0306849803833923!GO:0008320;protein transmembrane transporter activity;0.0308656194066!GO:0005784;translocon complex;0.0308656194066!GO:0051128;regulation of cellular component organization and biogenesis;0.0309891678653282!GO:0030125;clathrin vesicle coat;0.0312145951664834!GO:0030665;clathrin coated vesicle membrane;0.0312145951664834!GO:0000726;non-recombinational repair;0.0314082892527644!GO:0006733;oxidoreduction coenzyme metabolic process;0.0314082892527644!GO:0042026;protein refolding;0.0315757589820938!GO:0003711;transcription elongation regulator activity;0.0322019254123359!GO:0031625;ubiquitin protein ligase binding;0.0322019254123359!GO:0000792;heterochromatin;0.0323877610809701!GO:0005669;transcription factor TFIID complex;0.0324526172250803!GO:0030100;regulation of endocytosis;0.0324980766664311!GO:0045045;secretory pathway;0.0331218929018734!GO:0000339;RNA cap binding;0.0334613508872146!GO:0000725;recombinational repair;0.03361686022101!GO:0000724;double-strand break repair via homologous recombination;0.03361686022101!GO:0031570;DNA integrity checkpoint;0.0339024120445692!GO:0004680;casein kinase activity;0.0346077100857191!GO:0032984;macromolecular complex disassembly;0.0346077100857191!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0352773762101679!GO:0001522;pseudouridine synthesis;0.0356501142079986!GO:0008632;apoptotic program;0.0358333814667542!GO:0032200;telomere organization and biogenesis;0.0358333814667542!GO:0000723;telomere maintenance;0.0358333814667542!GO:0017166;vinculin binding;0.0364519501617836!GO:0046966;thyroid hormone receptor binding;0.0366031636482881!GO:0046365;monosaccharide catabolic process;0.0367995376725964!GO:0043130;ubiquitin binding;0.0376949161888177!GO:0032182;small conjugating protein binding;0.0376949161888177!GO:0006516;glycoprotein catabolic process;0.0377980424040625!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0379335080877434!GO:0045039;protein import into mitochondrial inner membrane;0.0379335080877434!GO:0050811;GABA receptor binding;0.0387197084828111!GO:0006360;transcription from RNA polymerase I promoter;0.038727770701788!GO:0043284;biopolymer biosynthetic process;0.038982489999472!GO:0035267;NuA4 histone acetyltransferase complex;0.0395631933010581!GO:0006406;mRNA export from nucleus;0.0395631933010581!GO:0001558;regulation of cell growth;0.0403073136386181!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0404201633083998!GO:0016481;negative regulation of transcription;0.0404201633083998!GO:0006506;GPI anchor biosynthetic process;0.0408801122755707!GO:0008536;Ran GTPase binding;0.0410884571259638!GO:0031529;ruffle organization and biogenesis;0.0411626844687492!GO:0006284;base-excision repair;0.0411745444926493!GO:0006897;endocytosis;0.0413213059258995!GO:0010324;membrane invagination;0.0413213059258995!GO:0006266;DNA ligation;0.041604625492299!GO:0043433;negative regulation of transcription factor activity;0.0418730104334917!GO:0009081;branched chain family amino acid metabolic process;0.0421609155291791!GO:0032981;mitochondrial respiratory chain complex I assembly;0.042385536390642!GO:0010257;NADH dehydrogenase complex assembly;0.042385536390642!GO:0033108;mitochondrial respiratory chain complex assembly;0.042385536390642!GO:0008156;negative regulation of DNA replication;0.0427498710957877!GO:0031371;ubiquitin conjugating enzyme complex;0.0431857794704364!GO:0005996;monosaccharide metabolic process;0.0440187538955277!GO:0005850;eukaryotic translation initiation factor 2 complex;0.044084602098382!GO:0019783;small conjugating protein-specific protease activity;0.0447555729533274!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0449303259843815!GO:0009064;glutamine family amino acid metabolic process;0.0459612144518264!GO:0006907;pinocytosis;0.046241524168709!GO:0030518;steroid hormone receptor signaling pathway;0.0463257562544269!GO:0030384;phosphoinositide metabolic process;0.0464934304586237!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0470367629737903!GO:0016746;transferase activity, transferring acyl groups;0.0475459392327598!GO:0006379;mRNA cleavage;0.0479844389176256!GO:0000781;chromosome, telomeric region;0.0487381545998116!GO:0000175;3'-5'-exoribonuclease activity;0.0487856875689932!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0490056833720813!GO:0016791;phosphoric monoester hydrolase activity;0.049097995457008!GO:0044438;microbody part;0.049137318760702!GO:0044439;peroxisomal part;0.049137318760702!GO:0009119;ribonucleoside metabolic process;0.0491443546837281!GO:0000793;condensed chromosome;0.0496535164725111!GO:0043174;nucleoside salvage;0.0496535164725111!GO:0006166;purine ribonucleoside salvage;0.0496535164725111!GO:0043101;purine salvage;0.0496535164725111!GO:0004540;ribonuclease activity;0.0499623133775075!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0499623133775075 | |||
|sample_id=11253 | |sample_id=11253 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=prostate | |sample_tissue=prostate | ||
|top_motifs=HNF1A:3.67607455866;HNF4A_NR2F1,2:3.3108832666;SNAI1..3:2.29529856084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.07137913701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.92911780818;ZEB1:1.81066997991;bHLH_family:1.55535612297;FOXA2:1.46039801308;LEF1_TCF7_TCF7L1,2:1.39465993946;NFY{A,B,C}:1.3814973128;LHX3,4:1.35918845656;ESR1:1.32456830006;FOX{F1,F2,J1}:1.29810631691;MYOD1:1.26478997763;ELK1,4_GABP{A,B1}:1.25378036045;E2F1..5:1.1131262924;ESRRA:1.06789106959;RBPJ:1.06770430042;HOX{A6,A7,B6,B7}:1.03290933879;SP1:0.880602523476;ONECUT1,2:0.857497913287;FOXM1:0.835540036351;T:0.716389148317;NRF1:0.668302143997;PBX1:0.665052884662;STAT5{A,B}:0.659634524698;EVI1:0.641729087582;NKX2-3_NKX2-5:0.621171461813;TEAD1:0.620260036562;FOXN1:0.610269698013;RORA:0.603516309574;XCPE1{core}:0.58075337587;TFDP1:0.56778635853;SOX{8,9,10}:0.542729880434;YY1:0.519654145604;TBP:0.475748390316;EN1,2:0.44774471393;GATA6:0.437692773971;LMO2:0.434085691835;NKX3-2:0.409878114676;ZNF143:0.401814106238;FOXQ1:0.392766985177;GFI1:0.328628266479;SOX17:0.29541046087;TBX4,5:0.294550352835;ATF4:0.290414423391;AIRE:0.276081838072;MYB:0.270475336819;PATZ1:0.269906110401;FOXD3:0.266321066112;HLF:0.25543099338;UFEwm:0.253655749488;MED-1{core}:0.23531791582;ALX4:0.234554946251;ARID5B:0.205492637222;STAT1,3:0.198304723938;HIC1:0.184510230463;SREBF1,2:0.179811153976;HES1:0.172985190466;ATF6:0.161427706209;CDX1,2,4:0.151416530109;HOXA9_MEIS1:0.139792487382;MAZ:0.133926962309;RXR{A,B,G}:0.106332304631;RXRA_VDR{dimer}:0.0917821538274;ZNF384:0.0737913270788;FOX{D1,D2}:0.0427724254213;ADNP_IRX_SIX_ZHX:0.0421372525802;TFAP2B:0.0417718764252;TOPORS:0.0256957747304;ZNF148:0.0135794769502;PITX1..3:0.0135642102877;BREu{core}:0.0130951095262;IKZF2:0.00788110916848;FOXP1:-0.00468989087062;NR6A1:-0.0112874508789;EBF1:-0.0161072120841;HAND1,2:-0.0460945551586;PAX5:-0.0551775137524;TFAP2{A,C}:-0.0581924068351;MTE{core}:-0.05930233772;ZFP161:-0.0934112233487;NR5A1,2:-0.103194126308;PDX1:-0.111852151388;HSF1,2:-0.113882256006;IKZF1:-0.121470850611;VSX1,2:-0.128109401503;CEBPA,B_DDIT3:-0.149951432394;PAX3,7:-0.154577604222;KLF4:-0.157439188312;POU6F1:-0.160856121571;SPZ1:-0.162341839654;CRX:-0.167038691991;PAX1,9:-0.173953022604;HOX{A4,D4}:-0.201382020488;HOX{A5,B5}:-0.235111109504;NFIL3:-0.242395473878;MTF1:-0.243476220835;TFCP2:-0.246927303597;NFKB1_REL_RELA:-0.266257925791;FOS_FOS{B,L1}_JUN{B,D}:-0.281383482424;STAT2,4,6:-0.29889774801;NFE2:-0.302907664185;SOX5:-0.304594862256;ZBTB6:-0.318360810757;POU2F1..3:-0.323502202851;PAX4:-0.34768221565;CUX2:-0.350178080125;CDC5L:-0.350842856517;NHLH1,2:-0.353792060474;ELF1,2,4:-0.364915839581;FOXO1,3,4:-0.367852451557;TEF:-0.370990271293;JUN:-0.37901820213;REST:-0.382161085104;FOSL2:-0.382542265131;RREB1:-0.400403467827;ATF2:-0.405296390229;SOX2:-0.416297566573;OCT4_SOX2{dimer}:-0.418015720422;ATF5_CREB3:-0.419235451492;EGR1..3:-0.443360263783;NR3C1:-0.443962585016;XBP1:-0.448801874971;PPARG:-0.452980915911;PAX2:-0.475639784605;BACH2:-0.482342671828;MYBL2:-0.485442151554;POU1F1:-0.510734869495;TP53:-0.572225248498;MYFfamily:-0.575432609327;HMGA1,2:-0.57556494568;SPI1:-0.609068925283;DMAP1_NCOR{1,2}_SMARC:-0.611496118189;PAX8:-0.6168376728;PRDM1:-0.629466089874;MAFB:-0.633180153539;TLX2:-0.635168981778;GTF2A1,2:-0.63736190212;SPIB:-0.640128742299;NFE2L2:-0.645924309137;DBP:-0.648859325709;NR1H4:-0.662259272483;POU3F1..4:-0.671970468756;ZIC1..3:-0.678640118192;IRF7:-0.723744788208;FOXL1:-0.729176688954;TFAP4:-0.739044119393;NFIX:-0.753961510331;MEF2{A,B,C,D}:-0.75591626176;FOXP3:-0.758767119086;RUNX1..3:-0.763958761654;GTF2I:-0.777049966679;AR:-0.786452572625;PRRX1,2:-0.797951825449;ZNF238:-0.807496769643;ZBTB16:-0.810320063348;MZF1:-0.829269428989;RFX1:-0.838420812573;AHR_ARNT_ARNT2:-0.844858588898;ZNF423:-0.858109527112;RFX2..5_RFXANK_RFXAP:-0.874085967062;NKX6-1,2:-0.878775915277;GFI1B:-0.889272885655;HIF1A:-0.889744390366;ALX1:-0.890365244177;NANOG:-0.92591406991;IRF1,2:-0.93980073757;SRF:-0.940820329206;FOX{I1,J2}:-1.02045370568;ETS1,2:-1.02573467004;TAL1_TCF{3,4,12}:-1.03755115681;NKX2-2,8:-1.0462370962;GLI1..3:-1.07929505369;CREB1:-1.10508369141;BPTF:-1.10557098669;POU5F1:-1.11190676481;GATA4:-1.15606557493;NANOG{mouse}:-1.16316997889;NKX2-1,4:-1.17516328506;HBP1_HMGB_SSRP1_UBTF:-1.23718270211;EP300:-1.25675778408;NKX3-1:-1.26107397046;TLX1..3_NFIC{dimer}:-1.2702434675;GZF1:-1.32175316946;HMX1:-1.3290236583;TGIF1:-1.35175474157;NFE2L1:-1.46920208494;PAX6:-1.51853833501;SMAD1..7,9:-1.61754777451;GCM1,2:-1.71874788692;NFATC1..3:-1.78868700668 | |top_motifs=HNF1A:3.67607455866;HNF4A_NR2F1,2:3.3108832666;SNAI1..3:2.29529856084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.07137913701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.92911780818;ZEB1:1.81066997991;bHLH_family:1.55535612297;FOXA2:1.46039801308;LEF1_TCF7_TCF7L1,2:1.39465993946;NFY{A,B,C}:1.3814973128;LHX3,4:1.35918845656;ESR1:1.32456830006;FOX{F1,F2,J1}:1.29810631691;MYOD1:1.26478997763;ELK1,4_GABP{A,B1}:1.25378036045;E2F1..5:1.1131262924;ESRRA:1.06789106959;RBPJ:1.06770430042;HOX{A6,A7,B6,B7}:1.03290933879;SP1:0.880602523476;ONECUT1,2:0.857497913287;FOXM1:0.835540036351;T:0.716389148317;NRF1:0.668302143997;PBX1:0.665052884662;STAT5{A,B}:0.659634524698;EVI1:0.641729087582;NKX2-3_NKX2-5:0.621171461813;TEAD1:0.620260036562;FOXN1:0.610269698013;RORA:0.603516309574;XCPE1{core}:0.58075337587;TFDP1:0.56778635853;SOX{8,9,10}:0.542729880434;YY1:0.519654145604;TBP:0.475748390316;EN1,2:0.44774471393;GATA6:0.437692773971;LMO2:0.434085691835;NKX3-2:0.409878114676;ZNF143:0.401814106238;FOXQ1:0.392766985177;GFI1:0.328628266479;SOX17:0.29541046087;TBX4,5:0.294550352835;ATF4:0.290414423391;AIRE:0.276081838072;MYB:0.270475336819;PATZ1:0.269906110401;FOXD3:0.266321066112;HLF:0.25543099338;UFEwm:0.253655749488;MED-1{core}:0.23531791582;ALX4:0.234554946251;ARID5B:0.205492637222;STAT1,3:0.198304723938;HIC1:0.184510230463;SREBF1,2:0.179811153976;HES1:0.172985190466;ATF6:0.161427706209;CDX1,2,4:0.151416530109;HOXA9_MEIS1:0.139792487382;MAZ:0.133926962309;RXR{A,B,G}:0.106332304631;RXRA_VDR{dimer}:0.0917821538274;ZNF384:0.0737913270788;FOX{D1,D2}:0.0427724254213;ADNP_IRX_SIX_ZHX:0.0421372525802;TFAP2B:0.0417718764252;TOPORS:0.0256957747304;ZNF148:0.0135794769502;PITX1..3:0.0135642102877;BREu{core}:0.0130951095262;IKZF2:0.00788110916848;FOXP1:-0.00468989087062;NR6A1:-0.0112874508789;EBF1:-0.0161072120841;HAND1,2:-0.0460945551586;PAX5:-0.0551775137524;TFAP2{A,C}:-0.0581924068351;MTE{core}:-0.05930233772;ZFP161:-0.0934112233487;NR5A1,2:-0.103194126308;PDX1:-0.111852151388;HSF1,2:-0.113882256006;IKZF1:-0.121470850611;VSX1,2:-0.128109401503;CEBPA,B_DDIT3:-0.149951432394;PAX3,7:-0.154577604222;KLF4:-0.157439188312;POU6F1:-0.160856121571;SPZ1:-0.162341839654;CRX:-0.167038691991;PAX1,9:-0.173953022604;HOX{A4,D4}:-0.201382020488;HOX{A5,B5}:-0.235111109504;NFIL3:-0.242395473878;MTF1:-0.243476220835;TFCP2:-0.246927303597;NFKB1_REL_RELA:-0.266257925791;FOS_FOS{B,L1}_JUN{B,D}:-0.281383482424;STAT2,4,6:-0.29889774801;NFE2:-0.302907664185;SOX5:-0.304594862256;ZBTB6:-0.318360810757;POU2F1..3:-0.323502202851;PAX4:-0.34768221565;CUX2:-0.350178080125;CDC5L:-0.350842856517;NHLH1,2:-0.353792060474;ELF1,2,4:-0.364915839581;FOXO1,3,4:-0.367852451557;TEF:-0.370990271293;JUN:-0.37901820213;REST:-0.382161085104;FOSL2:-0.382542265131;RREB1:-0.400403467827;ATF2:-0.405296390229;SOX2:-0.416297566573;OCT4_SOX2{dimer}:-0.418015720422;ATF5_CREB3:-0.419235451492;EGR1..3:-0.443360263783;NR3C1:-0.443962585016;XBP1:-0.448801874971;PPARG:-0.452980915911;PAX2:-0.475639784605;BACH2:-0.482342671828;MYBL2:-0.485442151554;POU1F1:-0.510734869495;TP53:-0.572225248498;MYFfamily:-0.575432609327;HMGA1,2:-0.57556494568;SPI1:-0.609068925283;DMAP1_NCOR{1,2}_SMARC:-0.611496118189;PAX8:-0.6168376728;PRDM1:-0.629466089874;MAFB:-0.633180153539;TLX2:-0.635168981778;GTF2A1,2:-0.63736190212;SPIB:-0.640128742299;NFE2L2:-0.645924309137;DBP:-0.648859325709;NR1H4:-0.662259272483;POU3F1..4:-0.671970468756;ZIC1..3:-0.678640118192;IRF7:-0.723744788208;FOXL1:-0.729176688954;TFAP4:-0.739044119393;NFIX:-0.753961510331;MEF2{A,B,C,D}:-0.75591626176;FOXP3:-0.758767119086;RUNX1..3:-0.763958761654;GTF2I:-0.777049966679;AR:-0.786452572625;PRRX1,2:-0.797951825449;ZNF238:-0.807496769643;ZBTB16:-0.810320063348;MZF1:-0.829269428989;RFX1:-0.838420812573;AHR_ARNT_ARNT2:-0.844858588898;ZNF423:-0.858109527112;RFX2..5_RFXANK_RFXAP:-0.874085967062;NKX6-1,2:-0.878775915277;GFI1B:-0.889272885655;HIF1A:-0.889744390366;ALX1:-0.890365244177;NANOG:-0.92591406991;IRF1,2:-0.93980073757;SRF:-0.940820329206;FOX{I1,J2}:-1.02045370568;ETS1,2:-1.02573467004;TAL1_TCF{3,4,12}:-1.03755115681;NKX2-2,8:-1.0462370962;GLI1..3:-1.07929505369;CREB1:-1.10508369141;BPTF:-1.10557098669;POU5F1:-1.11190676481;GATA4:-1.15606557493;NANOG{mouse}:-1.16316997889;NKX2-1,4:-1.17516328506;HBP1_HMGB_SSRP1_UBTF:-1.23718270211;EP300:-1.25675778408;NKX3-1:-1.26107397046;TLX1..3_NFIC{dimer}:-1.2702434675;GZF1:-1.32175316946;HMX1:-1.3290236583;TGIF1:-1.35175474157;NFE2L1:-1.46920208494;PAX6:-1.51853833501;SMAD1..7,9:-1.61754777451;GCM1,2:-1.71874788692;NFATC1..3:-1.78868700668 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11253-116F2;search_select_hide=table117:FF:11253-116F2 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Prostate Epithelial Cells (polarized), donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10882 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10882
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10882
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.357 |
| 10 | 10 | 0.3 |
| 100 | 100 | 0.249 |
| 101 | 101 | 0.448 |
| 102 | 102 | 0.606 |
| 103 | 103 | 0.726 |
| 104 | 104 | 0.673 |
| 105 | 105 | 0.782 |
| 106 | 106 | 0.0982 |
| 107 | 107 | 0.523 |
| 108 | 108 | 0.935 |
| 109 | 109 | 0.431 |
| 11 | 11 | 0.261 |
| 110 | 110 | 0.328 |
| 111 | 111 | 0.841 |
| 112 | 112 | 0.0957 |
| 113 | 113 | 0.0361 |
| 114 | 114 | 0.296 |
| 115 | 115 | 0.627 |
| 116 | 116 | 0.66 |
| 117 | 117 | 0.636 |
| 118 | 118 | 0.333 |
| 119 | 119 | 0.88 |
| 12 | 12 | 0.931 |
| 120 | 120 | 0.247 |
| 121 | 121 | 0.501 |
| 122 | 122 | 0.7 |
| 123 | 123 | 0.0708 |
| 124 | 124 | 0.871 |
| 125 | 125 | 0.0128 |
| 126 | 126 | 0.543 |
| 127 | 127 | 0.3 |
| 128 | 128 | 0.022 |
| 129 | 129 | 0.88 |
| 13 | 13 | 0.0354 |
| 130 | 130 | 0.591 |
| 131 | 131 | 0.058 |
| 132 | 132 | 0.872 |
| 133 | 133 | 0.147 |
| 134 | 134 | 0.0858 |
| 135 | 135 | 0.0666 |
| 136 | 136 | 0.0114 |
| 137 | 137 | 0.00993 |
| 138 | 138 | 0.0265 |
| 139 | 139 | 0.0799 |
| 14 | 14 | 0.243 |
| 140 | 140 | 0.992 |
| 141 | 141 | 0.996 |
| 142 | 142 | 0.736 |
| 143 | 143 | 0.0113 |
| 144 | 144 | 0.369 |
| 145 | 145 | 0.168 |
| 146 | 146 | 0.518 |
| 147 | 147 | 0.789 |
| 148 | 148 | 0.435 |
| 149 | 149 | 0.963 |
| 15 | 15 | 0.339 |
| 150 | 150 | 0.31 |
| 151 | 151 | 0.656 |
| 152 | 152 | 0.141 |
| 153 | 153 | 0.136 |
| 154 | 154 | 0.0624 |
| 155 | 155 | 0.0573 |
| 156 | 156 | 0.581 |
| 157 | 157 | 0.873 |
| 158 | 158 | 0.806 |
| 159 | 159 | 0.532 |
| 16 | 16 | 0.554 |
| 160 | 160 | 0.14 |
| 161 | 161 | 0.641 |
| 162 | 162 | 0.878 |
| 163 | 163 | 0.224 |
| 164 | 164 | 0.934 |
| 165 | 165 | 0.604 |
| 166 | 166 | 0.0723 |
| 167 | 167 | 0.87 |
| 168 | 168 | 0.506 |
| 169 | 169 | 0.462 |
| 17 | 17 | 0.729 |
| 18 | 18 | 0.0204 |
| 19 | 19 | 0.32 |
| 2 | 2 | 0.535 |
| 20 | 20 | 0.396 |
| 21 | 21 | 0.421 |
| 22 | 22 | 0.665 |
| 23 | 23 | 0.0195 |
| 24 | 24 | 0.827 |
| 25 | 25 | 0.782 |
| 26 | 26 | 0.794 |
| 27 | 27 | 0.489 |
| 28 | 28 | 0.711 |
| 29 | 29 | 0.504 |
| 3 | 3 | 0.302 |
| 30 | 30 | 0.682 |
| 31 | 31 | 0.796 |
| 32 | 32 | 0.154 |
| 33 | 33 | 0.908 |
| 34 | 34 | 0.442 |
| 35 | 35 | 0.249 |
| 36 | 36 | 0.893 |
| 37 | 37 | 0.597 |
| 38 | 38 | 0.954 |
| 39 | 39 | 0.415 |
| 4 | 4 | 0.784 |
| 40 | 40 | 0.0967 |
| 41 | 41 | 0.0134 |
| 42 | 42 | 0.413 |
| 43 | 43 | 0.14 |
| 44 | 44 | 0.184 |
| 45 | 45 | 0.62 |
| 46 | 46 | 0.434 |
| 47 | 47 | 0.944 |
| 48 | 48 | 0.796 |
| 49 | 49 | 0.197 |
| 5 | 5 | 0.21 |
| 50 | 50 | 0.623 |
| 51 | 51 | 0.985 |
| 52 | 52 | 0.711 |
| 53 | 53 | 0.332 |
| 54 | 54 | 0.994 |
| 55 | 55 | 0.207 |
| 56 | 56 | 0.872 |
| 57 | 57 | 0.343 |
| 58 | 58 | 0.457 |
| 59 | 59 | 0.246 |
| 6 | 6 | 0.492 |
| 60 | 60 | 0.263 |
| 61 | 61 | 0.22 |
| 62 | 62 | 0.233 |
| 63 | 63 | 0.409 |
| 64 | 64 | 0.643 |
| 65 | 65 | 0.148 |
| 66 | 66 | 0.0234 |
| 67 | 67 | 0.167 |
| 68 | 68 | 0.343 |
| 69 | 69 | 0.275 |
| 7 | 7 | 0.458 |
| 70 | 70 | 0.176 |
| 71 | 71 | 0.296 |
| 72 | 72 | 0.356 |
| 73 | 73 | 0.26 |
| 74 | 74 | 0.0392 |
| 75 | 75 | 0.518 |
| 76 | 76 | 0.747 |
| 77 | 77 | 0.928 |
| 78 | 78 | 0.0053 |
| 79 | 79 | 0.304 |
| 8 | 8 | 0.508 |
| 80 | 80 | 0.483 |
| 81 | 81 | 0.144 |
| 82 | 82 | 0.024 |
| 83 | 83 | 0.511 |
| 84 | 84 | 0.347 |
| 85 | 85 | 0.0687 |
| 86 | 86 | 0.358 |
| 87 | 87 | 0.216 |
| 88 | 88 | 0.894 |
| 89 | 89 | 0.358 |
| 9 | 9 | 0.0464 |
| 90 | 90 | 0.478 |
| 91 | 91 | 0.00673 |
| 92 | 92 | 0.102 |
| 93 | 93 | 0.702 |
| 94 | 94 | 0.0318 |
| 95 | 95 | 0.148 |
| 96 | 96 | 0.0297 |
| 97 | 97 | 0.904 |
| 98 | 98 | 0.468 |
| 99 | 99 | 0.487 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10882
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
