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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000925,UBERON:0006598,UBERON:0002532,UBERON:0000065,UBERON:0001004,UBERON:0006595
|DRA_sample_Accession=CAGE@SAMD00005878
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002368,CL:0000223
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005878
|HumanCAGEScanFiles=NCig10047;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008464;DRR009336;DRZ000761;DRZ002146;DRZ012111;DRZ013496
|accession_numbers_RNASeq=sRNA-Seq;DRX037102;DRR041468;DRZ007110
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000166
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.32!210.08!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.09!135.20!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.04!107.60!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.02!104.63!SOX15;;chr1:6479968..6479986,-!p1@HES2!1.97!93.06!HES2;;chr3:189507432..189507459,+!p1@TP63!1.94!86.11!TP63;;chr17:7492684..7492778,-!p2@SOX15!1.66!91.73!SOX15;;chr6:10415276..10415341,-!p2@TFAP2A!1.62!48.76!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!61.49!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.54!38.18!BNC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.47!43.64!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.41!27.93!ZNF385A;;chr6:34524093..34524135,-!p1@SPDEF!1.41!24.79!SPDEF;;chr6:34524049..34524089,-!p2@SPDEF!1.34!20.99!SPDEF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.33!ZBED1;;chr17:80797886..80797906,-!p1@ZNF750!1.30!18.84!ZNF750;;chr11:34642656..34642667,+!p2@EHF!1.28!18.18!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.27!17.69!ZBED2;;chr13:73633131..73633149,+!p1@KLF5!1.25!176.36!KLF5;;chr5:134369905..134369972,-!p1@PITX1!1.24!25.29!PITX1;;chr11:34645791..34645836,+!p3@EHF!1.24!16.53!EHF;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.37!SOX7;;chr6:34524025..34524045,-!p3@SPDEF!1.21!15.04!SPDEF;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.71!IRX2;;chr2:46524897..46524911,+!p2@EPAS1!1.18!39.01!EPAS1;;chr14:62162285..62162296,+!p3@HIF1A!1.15!67.44!HIF1A;;chr14:37131058..37131139,+!p1@PAX9!1.15!13.06!PAX9;;chr12:66218836..66218888,+!p1@HMGA2!1.14!118.01!HMGA2;;chr8:102504651..102504683,+!p1@GRHL2!1.12!12.23!GRHL2;;chr6:126240380..126240430,+!p2@NCOA7!1.10!30.08!NCOA7;;chr1:209979375..209979386,-!p4@IRF6!1.08!11.07!IRF6;;chr20:22564895..22564910,-!p1@FOXA2!1.06!10.41!FOXA2;;chr6:126102292..126102329,+!p3@NCOA7!1.05!33.72!NCOA7;;chr14:37051798..37051831,-!p1@NKX2-8!1.05!10.25!NKX2-8;;chr1:158979872..158979898,+!p3@IFI16!1.02!29.42!IFI16;;chr19:9811347..9811351,-!p1@ZNF812!1.01!9.26!ZNF812;;chr20:22565185..22565223,-!p3@FOXA2!0.99!8.76!FOXA2;;chr14:62162258..62162269,+!p2@HIF1A!0.98!84.13!HIF1A;;chr19:45908292..45908374,-!p1@PPP1R13L!0.97!76.20!PPP1R13L;;chr6:1312325..1312340,+!p1@FOXQ1!0.96!13.39!FOXQ1;;chr8:49833948..49833973,-!p2@SNAI2!0.95!51.90!SNAI2;;chr6:10412576..10412599,-!p5@TFAP2A!0.94!7.77!TFAP2A;;chr1:158979792..158979814,+!p2@IFI16!0.92!72.56!IFI16;;chr4:57547454..57547469,-!p1@HOPX!0.91!7.11!HOPX;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.78!IRX2;;chr2:10091815..10091864,+!p1@GRHL1!0.87!8.76!GRHL1;;chr5:134369879..134369898,-!p2@PITX1!0.87!6.45!PITX1;;chr12:66218255..66218304,+!p3@HMGA2!0.86!17.52!HMGA2;;chr1:209979449..209979460,-!p3@IRF6!0.86!6.28!IRF6;;chr13:73636252..73636307,+!p2@KLF5!0.85!7.11!KLF5;;chr6:10415484..10415508,-!p3@TFAP2A!0.83!5.78!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!0.82!27.44!HMGA2;;chr16:79634624..79634642,-!p1@MAF!0.82!23.64!MAF;;chr6:106546808..106546833,+!p3@PRDM1!0.82!7.27!PRDM1;;chr2:70142232..70142251,+!p1@MXD1!0.81!33.22!MXD1;;chr1:158979851..158979865,+!p5@IFI16!0.81!12.73!IFI16;;chr22:19748231..19748317,+!p1@TBX1!0.81!5.45!TBX1;;chr12:57914286..57914304,-!p1@DDIT3!0.79!205.45!DDIT3;;chr3:189507460..189507471,+!p3@TP63!0.79!5.12!TP63;;chr8:49833978..49833996,-!p1@SNAI2!0.78!113.05!SNAI2;;chr12:27485762..27485776,+!p3@ARNTL2!0.78!14.38!ARNTL2;;chr15:83953373..83953386,-!p2@BNC1!0.78!4.96!BNC1;;chr3:138665969..138665993,-!p2@FOXL2!0.78!4.96!FOXL2;;chr14:38064429..38064486,-!p1@FOXA1!0.76!4.79!FOXA1;;chr1:201979703..201979721,+!p2@ELF3!0.76!4.79!ELF3;;chr1:201979743..201979762,+!p1@ELF3!0.76!4.79!ELF3;;chr1:24645921..24645973,+!p2@GRHL3!0.76!4.79!GRHL3;;chr16:86612320..86612394,+!p1@FOXL1!0.75!4.63!FOXL1;;chr13:41593425..41593480,-!p1@ELF1!0.74!31.57!ELF1;;chr6:10413188..10413249,-!p7@TFAP2A!0.74!4.46!TFAP2A;;chr3:138665937..138665968,-!p1@FOXL2!0.74!4.46!FOXL2;;chr2:208030647..208030689,-!p1@KLF7!0.73!40.99!KLF7;;chr6:10412392..10412409,-!p4@TFAP2A!0.73!5.12!TFAP2A;;chr2:46524878..46524891,+!p3@EPAS1!0.72!7.93!EPAS1;;chr12:66218923..66218934,+!p14@HMGA2!0.72!4.30!HMGA2;;chr13:73636516..73636532,+!p3@KLF5!0.71!4.79!KLF5;;chr6:126102339..126102351,+!p12@NCOA7!0.71!4.13!NCOA7;;chr15:101069113..101069169,-!p1@CERS3!0.71!4.13!CERS3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.70!3.97!TFCP2L1;;chr1:24645832..24645853,+!p1@GRHL3!0.68!3.80!GRHL3;;chr2:178129358..178129403,-!p5@NFE2L2!0.67!16.69!NFE2L2;;chr21:36260343..36260402,-!p6@RUNX1!0.67!6.28!RUNX1;;chr1:24646263..24646277,+!p4@GRHL3!0.67!3.64!GRHL3;;chr17:7492504..7492520,-!p3@SOX15!0.67!3.64!SOX15;;chr2:178128149..178128198,-!p2@NFE2L2!0.65!21.65!NFE2L2;;chr12:80084737..80084763,-!p3@PAWR!0.65!14.71!PAWR;;chr12:27485889..27485900,+!p4@ARNTL2!0.65!4.30!ARNTL2;;chr13:73636621..73636647,+!p4@KLF5!0.65!3.47!KLF5;;chr1:8938709..8938720,-!p3@ENO1!0.64!193.22!ENO1;;chr21:40177892..40177903,+!p2@ETS2!0.64!15.37!ETS2;;chr17:41622925..41622976,-!p3@ETV4!0.64!5.45!ETV4;;chr19:33865009..33865090,+!p3@CEBPG!0.63!4.63!CEBPG;;chr12:66218904..66218913,+!p11@HMGA2!0.63!3.31!HMGA2;;chr6:12610225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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg38.nobarcode.ctss.bed.gz
|id=FF:11256-116F5
|id=FF:11256-116F5
|is_a=EFO:0002091;;FF:0000002;;FF:0000166;;FF:0000210
|is_a=EFO:0002091;;FF:0000166
|is_obsolete=
|library_id=CNhs10884
|library_id_phase_based=2:CNhs10884
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11256
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTAGAG.11256
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11256
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTAGAG.11256
|name=Small Airway Epithelial Cells, donor1
|name=Small Airway Epithelial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 66:
|profile_cagescan=NCig10047,,,
|profile_cagescan=NCig10047,,,
|profile_hcage=CNhs10884,LSID703,release008,COMPLETED
|profile_hcage=CNhs10884,LSID703,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10007,,,
|profile_srnaseq=SRhi10007,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_box=116
|rna_catalog_number=N/A
|rna_catalog_number=N/A
Line 56: Line 83:
|rna_tube_id=116F5
|rna_tube_id=116F5
|rna_weight_ug=35.45666667
|rna_weight_ug=35.45666667
|rnaseq_library_id=SRhi10007.GTAGAG
|sample_age=19
|sample_age=19
|sample_category=primary cells
|sample_cell_catalog=CC-2547
|sample_cell_catalog=CC-2547
|sample_cell_line=
|sample_cell_line=
Line 69: Line 98:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.26030985196063e-226!GO:0005737;cytoplasm;8.09041869121688e-201!GO:0043226;organelle;3.81591885985963e-169!GO:0043229;intracellular organelle;1.21916694723262e-168!GO:0043231;intracellular membrane-bound organelle;7.21727271147333e-157!GO:0043227;membrane-bound organelle;1.28903563045069e-156!GO:0044444;cytoplasmic part;8.60303269632151e-135!GO:0044422;organelle part;6.25660896343208e-125!GO:0044446;intracellular organelle part;1.54297171981269e-123!GO:0032991;macromolecular complex;7.03114716873802e-86!GO:0030529;ribonucleoprotein complex;6.75058370605535e-80!GO:0044238;primary metabolic process;3.7772662044885e-77!GO:0044237;cellular metabolic process;1.99735406394613e-76!GO:0005515;protein binding;1.03849770086417e-71!GO:0043170;macromolecule metabolic process;1.73137834345433e-68!GO:0043233;organelle lumen;7.45220601640133e-64!GO:0031974;membrane-enclosed lumen;7.45220601640133e-64!GO:0005739;mitochondrion;3.52002739903704e-61!GO:0003723;RNA binding;8.48975725627499e-59!GO:0044428;nuclear part;3.45400708227974e-56!GO:0019538;protein metabolic process;4.91223104688019e-56!GO:0031090;organelle membrane;1.12189894091561e-54!GO:0006412;translation;2.24678043295055e-50!GO:0005840;ribosome;4.69306544411524e-50!GO:0033036;macromolecule localization;9.74377302729535e-50!GO:0015031;protein transport;9.74377302729535e-50!GO:0044267;cellular protein metabolic process;5.05917325408667e-49!GO:0044260;cellular macromolecule metabolic process;6.51678065652645e-49!GO:0005634;nucleus;7.88942998191098e-49!GO:0045184;establishment of protein localization;5.28221162953139e-47!GO:0008104;protein localization;1.38858435948374e-46!GO:0009058;biosynthetic process;3.09188661240584e-46!GO:0003735;structural constituent of ribosome;1.12452465803208e-43!GO:0006396;RNA processing;4.58416821680381e-43!GO:0044249;cellular biosynthetic process;1.10515764575376e-42!GO:0044429;mitochondrial part;2.23937412325826e-42!GO:0016043;cellular component organization and biogenesis;2.59193623759042e-42!GO:0043234;protein complex;4.04199013433447e-42!GO:0005829;cytosol;4.27769032581099e-42!GO:0009059;macromolecule biosynthetic process;6.88657158998013e-41!GO:0033279;ribosomal subunit;9.3623919244305e-38!GO:0046907;intracellular transport;1.09577691335995e-37!GO:0031981;nuclear lumen;2.82314478750158e-36!GO:0031967;organelle envelope;4.08391253739134e-36!GO:0031975;envelope;9.86727234760406e-36!GO:0043283;biopolymer metabolic process;2.21682542346838e-33!GO:0016071;mRNA metabolic process;5.79208846027988e-33!GO:0006886;intracellular protein transport;1.1581099524062e-32!GO:0010467;gene expression;5.80270953619506e-32!GO:0008380;RNA splicing;3.25211465781233e-31!GO:0065003;macromolecular complex assembly;7.0502178071355e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.55717470067016e-28!GO:0006397;mRNA processing;1.99040116336347e-28!GO:0043228;non-membrane-bound organelle;4.64710431739205e-28!GO:0043232;intracellular non-membrane-bound organelle;4.64710431739205e-28!GO:0005740;mitochondrial envelope;3.63566943129197e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.66978416583646e-27!GO:0022607;cellular component assembly;2.10553259539875e-26!GO:0031966;mitochondrial membrane;3.55727475266659e-25!GO:0012505;endomembrane system;1.48747000280896e-24!GO:0051649;establishment of cellular localization;1.48747000280896e-24!GO:0051641;cellular localization;1.60375098308382e-24!GO:0006996;organelle organization and biogenesis;7.70302209683454e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.5293007249697e-23!GO:0019866;organelle inner membrane;2.90264739654172e-23!GO:0044445;cytosolic part;7.60437640868338e-23!GO:0005681;spliceosome;1.91000899378629e-22!GO:0005743;mitochondrial inner membrane;4.56114533147722e-22!GO:0005783;endoplasmic reticulum;7.09097332772318e-22!GO:0006457;protein folding;7.56794840989978e-22!GO:0005654;nucleoplasm;1.88461394959494e-21!GO:0006119;oxidative phosphorylation;9.05482462204659e-21!GO:0016874;ligase activity;1.01986123163046e-19!GO:0005794;Golgi apparatus;1.75937454010101e-19!GO:0015935;small ribosomal subunit;2.0363663726987e-19!GO:0015934;large ribosomal subunit;3.07873374574148e-19!GO:0048770;pigment granule;4.46054941301796e-19!GO:0042470;melanosome;4.46054941301796e-19!GO:0044455;mitochondrial membrane part;4.61894689958274e-19!GO:0044432;endoplasmic reticulum part;1.63546679864925e-18!GO:0031980;mitochondrial lumen;3.34186832280593e-18!GO:0005759;mitochondrial matrix;3.34186832280593e-18!GO:0006512;ubiquitin cycle;4.51774322990194e-18!GO:0043285;biopolymer catabolic process;6.5727173126675e-18!GO:0022618;protein-RNA complex assembly;1.99678841170424e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.30833843280224e-17!GO:0044451;nucleoplasm part;2.99933355315982e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.67243578215864e-17!GO:0005730;nucleolus;3.70054141044067e-17!GO:0016462;pyrophosphatase activity;3.93981621640082e-17!GO:0019941;modification-dependent protein catabolic process;4.39474375718976e-17!GO:0043632;modification-dependent macromolecule catabolic process;4.39474375718976e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.66808841298544e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.72041659608669e-17!GO:0044257;cellular protein catabolic process;6.07904051041698e-17!GO:0044265;cellular macromolecule catabolic process;6.6205918030256e-17!GO:0006605;protein targeting;7.78626657763697e-17!GO:0030163;protein catabolic process;1.03378898414072e-16!GO:0009057;macromolecule catabolic process;1.82550550435198e-16!GO:0000166;nucleotide binding;2.88668772062103e-16!GO:0017111;nucleoside-triphosphatase activity;3.1973320912953e-16!GO:0051186;cofactor metabolic process;5.41055089144446e-16!GO:0012501;programmed cell death;1.30121521712148e-15!GO:0006915;apoptosis;2.57324383986714e-15!GO:0005761;mitochondrial ribosome;4.6295053900637e-15!GO:0000313;organellar ribosome;4.6295053900637e-15!GO:0048193;Golgi vesicle transport;7.18960900082493e-15!GO:0051082;unfolded protein binding;1.1963842515331e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.46497273913595e-14!GO:0008135;translation factor activity, nucleic acid binding;1.49929972210761e-14!GO:0043412;biopolymer modification;2.62563748511831e-14!GO:0044248;cellular catabolic process;2.91392141008729e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.83168304599564e-14!GO:0008134;transcription factor binding;4.27235112520795e-14!GO:0005746;mitochondrial respiratory chain;4.83692387313487e-14!GO:0016192;vesicle-mediated transport;6.32322349404275e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.34923476747046e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.68748917181327e-14!GO:0006732;coenzyme metabolic process;8.84598010483529e-14!GO:0008219;cell death;9.05145232694853e-14!GO:0016265;death;9.05145232694853e-14!GO:0005789;endoplasmic reticulum membrane;1.09888200870448e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26353951943745e-13!GO:0006464;protein modification process;2.86862166843476e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.87285502998139e-13!GO:0003954;NADH dehydrogenase activity;2.87285502998139e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.87285502998139e-13!GO:0006259;DNA metabolic process;2.14417250282464e-12!GO:0042254;ribosome biogenesis and assembly;4.05185708195289e-12!GO:0016070;RNA metabolic process;6.00954726396145e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.06805510540207e-11!GO:0042773;ATP synthesis coupled electron transport;1.06805510540207e-11!GO:0003743;translation initiation factor activity;1.10142230118375e-11!GO:0006413;translational initiation;1.16166095402186e-11!GO:0009055;electron carrier activity;1.17522402157961e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.40567315548142e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.57206544715964e-11!GO:0045271;respiratory chain complex I;1.57206544715964e-11!GO:0005747;mitochondrial respiratory chain complex I;1.57206544715964e-11!GO:0003676;nucleic acid binding;1.86822882811762e-11!GO:0032553;ribonucleotide binding;2.00483428269071e-11!GO:0032555;purine ribonucleotide binding;2.00483428269071e-11!GO:0017076;purine nucleotide binding;2.30657727972789e-11!GO:0006461;protein complex assembly;2.84112343108897e-11!GO:0008565;protein transporter activity;3.31967701663763e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.884310403465e-11!GO:0043687;post-translational protein modification;5.57000974877321e-11!GO:0006446;regulation of translational initiation;6.1167027748155e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.78011053991488e-11!GO:0043067;regulation of programmed cell death;9.99659231404132e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.05553045636297e-10!GO:0000375;RNA splicing, via transesterification reactions;1.05553045636297e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.05553045636297e-10!GO:0042981;regulation of apoptosis;1.0627303531275e-10!GO:0008639;small protein conjugating enzyme activity;3.95749809089716e-10!GO:0006913;nucleocytoplasmic transport;4.05124824143118e-10!GO:0019787;small conjugating protein ligase activity;4.28706006835392e-10!GO:0009056;catabolic process;5.16267140597846e-10!GO:0005793;ER-Golgi intermediate compartment;5.45702025699536e-10!GO:0009259;ribonucleotide metabolic process;6.62369072865818e-10!GO:0004842;ubiquitin-protein ligase activity;6.93727115397231e-10!GO:0005635;nuclear envelope;6.95639300115786e-10!GO:0051246;regulation of protein metabolic process;7.63999067361362e-10!GO:0051169;nuclear transport;9.05776291925547e-10!GO:0006163;purine nucleotide metabolic process;9.19237349744914e-10!GO:0007005;mitochondrion organization and biogenesis;1.19364991274488e-09!GO:0005768;endosome;1.33413881384473e-09!GO:0007049;cell cycle;1.34320420931557e-09!GO:0044431;Golgi apparatus part;1.7029479257219e-09!GO:0048475;coated membrane;2.0292121622434e-09!GO:0030117;membrane coat;2.0292121622434e-09!GO:0009150;purine ribonucleotide metabolic process;2.36892299994637e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.4114101449994e-09!GO:0016604;nuclear body;2.61192269112245e-09!GO:0009141;nucleoside triphosphate metabolic process;3.06465411709025e-09!GO:0051188;cofactor biosynthetic process;3.4179540428569e-09!GO:0006399;tRNA metabolic process;4.16768806771991e-09!GO:0006164;purine nucleotide biosynthetic process;4.19773930590847e-09!GO:0030120;vesicle coat;4.28072507261454e-09!GO:0030662;coated vesicle membrane;4.28072507261454e-09!GO:0016881;acid-amino acid ligase activity;4.35973749570179e-09!GO:0003924;GTPase activity;4.35973749570179e-09!GO:0031965;nuclear membrane;4.86142959904583e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.39897977740393e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.84319276718678e-09!GO:0009260;ribonucleotide biosynthetic process;7.82208302673301e-09!GO:0009142;nucleoside triphosphate biosynthetic process;8.37551422109816e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.37551422109816e-09!GO:0048523;negative regulation of cellular process;8.53363359712329e-09!GO:0003712;transcription cofactor activity;8.9124358475961e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.04111636029531e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.2528459735495e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.2528459735495e-08!GO:0017038;protein import;1.48605078677316e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.56670907865632e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.56670907865632e-08!GO:0016607;nuclear speck;2.38890197686741e-08!GO:0015986;ATP synthesis coupled proton transport;2.46878350388461e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.46878350388461e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.74726534032837e-08!GO:0044453;nuclear membrane part;3.73731888227821e-08!GO:0006974;response to DNA damage stimulus;4.08812990774886e-08!GO:0009108;coenzyme biosynthetic process;4.87385143693443e-08!GO:0005524;ATP binding;5.60771656695474e-08!GO:0043069;negative regulation of programmed cell death;5.91710131540772e-08!GO:0032559;adenyl ribonucleotide binding;8.16316956858097e-08!GO:0000139;Golgi membrane;8.48896267065003e-08!GO:0030554;adenyl nucleotide binding;1.12407916416362e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.38900402636464e-07!GO:0019829;cation-transporting ATPase activity;1.46259389042304e-07!GO:0043066;negative regulation of apoptosis;1.47754467548544e-07!GO:0065002;intracellular protein transport across a membrane;1.53616039703792e-07!GO:0031988;membrane-bound vesicle;1.55405853101841e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.55407638614336e-07!GO:0048519;negative regulation of biological process;1.75891832582636e-07!GO:0006364;rRNA processing;2.07133895394047e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.21562175254122e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.21562175254122e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.21562175254122e-07!GO:0016072;rRNA metabolic process;2.32157627743007e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.36998348990486e-07!GO:0046034;ATP metabolic process;3.40890656002329e-07!GO:0006366;transcription from RNA polymerase II promoter;3.6426626890493e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.64523791226081e-07!GO:0006754;ATP biosynthetic process;3.7640963213172e-07!GO:0006753;nucleoside phosphate metabolic process;3.7640963213172e-07!GO:0043038;amino acid activation;3.83403675323274e-07!GO:0006418;tRNA aminoacylation for protein translation;3.83403675323274e-07!GO:0043039;tRNA aminoacylation;3.83403675323274e-07!GO:0006752;group transfer coenzyme metabolic process;3.88513542787072e-07!GO:0005643;nuclear pore;4.49205054018678e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.55724659980286e-07!GO:0006916;anti-apoptosis;4.9577668031633e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.97054162981061e-07!GO:0005525;GTP binding;4.99878091525657e-07!GO:0000074;regulation of progression through cell cycle;5.23701161102935e-07!GO:0051726;regulation of cell cycle;6.68803430400775e-07!GO:0032446;protein modification by small protein conjugation;7.34108168890636e-07!GO:0016491;oxidoreductase activity;7.34108168890636e-07!GO:0005773;vacuole;7.71057737103288e-07!GO:0016887;ATPase activity;1.02267501800848e-06!GO:0016567;protein ubiquitination;1.05558116683643e-06!GO:0009060;aerobic respiration;1.22263468426618e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.28473575699582e-06!GO:0031982;vesicle;1.30990492330161e-06!GO:0042623;ATPase activity, coupled;1.87828215897183e-06!GO:0031410;cytoplasmic vesicle;2.02723408145096e-06!GO:0050657;nucleic acid transport;2.14071841252416e-06!GO:0051236;establishment of RNA localization;2.14071841252416e-06!GO:0050658;RNA transport;2.14071841252416e-06!GO:0022402;cell cycle process;2.20155957676256e-06!GO:0005770;late endosome;2.44913427576435e-06!GO:0006403;RNA localization;2.53790408777301e-06!GO:0045333;cellular respiration;2.55221433140673e-06!GO:0009117;nucleotide metabolic process;3.05876066843649e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.25969467977391e-06!GO:0006281;DNA repair;3.38689748388727e-06!GO:0005788;endoplasmic reticulum lumen;3.38689748388727e-06!GO:0050794;regulation of cellular process;3.53099141477989e-06!GO:0005798;Golgi-associated vesicle;3.66061000305366e-06!GO:0031252;leading edge;4.34849578185148e-06!GO:0004386;helicase activity;4.77979670448658e-06!GO:0045454;cell redox homeostasis;5.04724016515226e-06!GO:0006613;cotranslational protein targeting to membrane;5.05160258277611e-06!GO:0016740;transferase activity;5.10110918455707e-06!GO:0051170;nuclear import;5.27548945923518e-06!GO:0044440;endosomal part;5.32258196553716e-06!GO:0010008;endosome membrane;5.32258196553716e-06!GO:0000323;lytic vacuole;6.34216340003363e-06!GO:0005764;lysosome;6.34216340003363e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.76778859348297e-06!GO:0008026;ATP-dependent helicase activity;7.77685295591907e-06!GO:0016787;hydrolase activity;8.39734800983745e-06!GO:0032561;guanyl ribonucleotide binding;9.16658746865473e-06!GO:0019001;guanyl nucleotide binding;9.16658746865473e-06!GO:0045259;proton-transporting ATP synthase complex;9.37462230343568e-06!GO:0016853;isomerase activity;1.05353216894721e-05!GO:0009719;response to endogenous stimulus;1.09160371576017e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.10590546874545e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.19196075490079e-05!GO:0046930;pore complex;1.19653412736439e-05!GO:0006606;protein import into nucleus;1.2199443959852e-05!GO:0051187;cofactor catabolic process;1.43510673821177e-05!GO:0016859;cis-trans isomerase activity;1.64008394994113e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.67085983656946e-05!GO:0006099;tricarboxylic acid cycle;1.72429457069275e-05!GO:0046356;acetyl-CoA catabolic process;1.72429457069275e-05!GO:0008654;phospholipid biosynthetic process;1.75927603089316e-05!GO:0043623;cellular protein complex assembly;1.79018364550572e-05!GO:0009109;coenzyme catabolic process;2.30731153939941e-05!GO:0006323;DNA packaging;2.78671299272238e-05!GO:0048522;positive regulation of cellular process;3.53877642018264e-05!GO:0006084;acetyl-CoA metabolic process;3.96526942935419e-05!GO:0003724;RNA helicase activity;4.01126508120801e-05!GO:0004298;threonine endopeptidase activity;4.13076187223244e-05!GO:0005762;mitochondrial large ribosomal subunit;4.20066004962893e-05!GO:0000315;organellar large ribosomal subunit;4.20066004962893e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.31372885453617e-05!GO:0030118;clathrin coat;4.79654161429243e-05!GO:0009967;positive regulation of signal transduction;5.24508341348449e-05!GO:0006839;mitochondrial transport;5.46602730586284e-05!GO:0043021;ribonucleoprotein binding;5.56334422915401e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.56334422915401e-05!GO:0045786;negative regulation of progression through cell cycle;5.61929910329968e-05!GO:0051028;mRNA transport;5.69509466443295e-05!GO:0000245;spliceosome assembly;5.73952960103617e-05!GO:0000278;mitotic cell cycle;5.89183077586905e-05!GO:0030867;rough endoplasmic reticulum membrane;5.94836969199539e-05!GO:0006793;phosphorus metabolic process;5.98815498887507e-05!GO:0006796;phosphate metabolic process;5.98815498887507e-05!GO:0006612;protein targeting to membrane;6.87945615304598e-05!GO:0000314;organellar small ribosomal subunit;7.14293123451674e-05!GO:0005763;mitochondrial small ribosomal subunit;7.14293123451674e-05!GO:0003714;transcription corepressor activity;8.07776804073113e-05!GO:0005905;coated pit;8.14071673205029e-05!GO:0005769;early endosome;8.45391953832925e-05!GO:0051276;chromosome organization and biogenesis;8.62301553105413e-05!GO:0016779;nucleotidyltransferase activity;8.69752749801169e-05!GO:0005667;transcription factor complex;8.97363052456971e-05!GO:0051427;hormone receptor binding;0.000102111984019299!GO:0043566;structure-specific DNA binding;0.000120206343405524!GO:0048471;perinuclear region of cytoplasm;0.000120206343405524!GO:0031968;organelle outer membrane;0.000126075066271183!GO:0007243;protein kinase cascade;0.000130169683545614!GO:0000151;ubiquitin ligase complex;0.000135657833408299!GO:0065004;protein-DNA complex assembly;0.000138305903049176!GO:0019867;outer membrane;0.000153370081272747!GO:0005741;mitochondrial outer membrane;0.000161836006044287!GO:0042802;identical protein binding;0.000174966102059284!GO:0003697;single-stranded DNA binding;0.000181324835136959!GO:0006091;generation of precursor metabolites and energy;0.000187457267465732!GO:0035257;nuclear hormone receptor binding;0.000193683131044526!GO:0030036;actin cytoskeleton organization and biogenesis;0.000205458891827291!GO:0033116;ER-Golgi intermediate compartment membrane;0.000219523629011332!GO:0006626;protein targeting to mitochondrion;0.000231372625761188!GO:0043065;positive regulation of apoptosis;0.000250377348649018!GO:0051789;response to protein stimulus;0.000275520137148314!GO:0006986;response to unfolded protein;0.000275520137148314!GO:0003713;transcription coactivator activity;0.000276705233710267!GO:0007264;small GTPase mediated signal transduction;0.0002787518063142!GO:0005048;signal sequence binding;0.00030508121838001!GO:0016044;membrane organization and biogenesis;0.000317447829281176!GO:0008092;cytoskeletal protein binding;0.000329706289104619!GO:0016564;transcription repressor activity;0.000329706289104619!GO:0005885;Arp2/3 protein complex;0.000329706289104619!GO:0043068;positive regulation of programmed cell death;0.000348902103155868!GO:0004576;oligosaccharyl transferase activity;0.000357401364462208!GO:0008250;oligosaccharyl transferase complex;0.00038350046106347!GO:0030658;transport vesicle membrane;0.000419391186399972!GO:0001726;ruffle;0.000444575328043353!GO:0030119;AP-type membrane coat adaptor complex;0.000464327553491527!GO:0007006;mitochondrial membrane organization and biogenesis;0.000472824227680106!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000482217477200503!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000482687981220861!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000494514867252825!GO:0006979;response to oxidative stress;0.000502320133611905!GO:0065009;regulation of a molecular function;0.000522570594575521!GO:0031324;negative regulation of cellular metabolic process;0.000546288763292253!GO:0016310;phosphorylation;0.000589481568690462!GO:0003899;DNA-directed RNA polymerase activity;0.000684950927007188!GO:0050789;regulation of biological process;0.000731480373937725!GO:0006891;intra-Golgi vesicle-mediated transport;0.000764960355736053!GO:0030663;COPI coated vesicle membrane;0.000771355235279621!GO:0030126;COPI vesicle coat;0.000771355235279621!GO:0030131;clathrin adaptor complex;0.000798000880238249!GO:0031072;heat shock protein binding;0.000849428822666019!GO:0005791;rough endoplasmic reticulum;0.000883017165377103!GO:0030132;clathrin coat of coated pit;0.000895070737163471!GO:0030133;transport vesicle;0.000921728058687742!GO:0008632;apoptotic program;0.000923344726406812!GO:0043681;protein import into mitochondrion;0.00093426709270252!GO:0051920;peroxiredoxin activity;0.000936082902329932!GO:0016568;chromatin modification;0.000938328103456343!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000951682570151281!GO:0018196;peptidyl-asparagine modification;0.000954920461278802!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000954920461278802!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000992355190738546!GO:0046489;phosphoinositide biosynthetic process;0.00100149524020212!GO:0051168;nuclear export;0.0010322692324797!GO:0016197;endosome transport;0.00105609962914259!GO:0030660;Golgi-associated vesicle membrane;0.00105855270600345!GO:0030029;actin filament-based process;0.00106724689845515!GO:0048468;cell development;0.00111043830824651!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00111395935418406!GO:0009165;nucleotide biosynthetic process;0.00112099839628118!GO:0006333;chromatin assembly or disassembly;0.00112601513412063!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00115757075565475!GO:0048500;signal recognition particle;0.00116500823329183!GO:0008186;RNA-dependent ATPase activity;0.00121411200951787!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00124440296322317!GO:0046474;glycerophospholipid biosynthetic process;0.00126307654823518!GO:0030176;integral to endoplasmic reticulum membrane;0.0013201500727131!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00136615901195679!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00140701160933322!GO:0009892;negative regulation of metabolic process;0.001469968517613!GO:0019899;enzyme binding;0.00148252063310353!GO:0030659;cytoplasmic vesicle membrane;0.00149305359806007!GO:0005813;centrosome;0.00166738213700979!GO:0048518;positive regulation of biological process;0.00172997497467026!GO:0016563;transcription activator activity;0.00173968018110423!GO:0006417;regulation of translation;0.00177419412639674!GO:0015630;microtubule cytoskeleton;0.00178038069789656!GO:0019843;rRNA binding;0.00178713586473492!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00179757774487961!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00179757774487961!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00179757774487961!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00184048401720889!GO:0030125;clathrin vesicle coat;0.00186692770897861!GO:0030665;clathrin coated vesicle membrane;0.00186692770897861!GO:0051098;regulation of binding;0.00193444766478121!GO:0051252;regulation of RNA metabolic process;0.00200386846305723!GO:0030137;COPI-coated vesicle;0.00206880843238972!GO:0030880;RNA polymerase complex;0.00217270233422855!GO:0016281;eukaryotic translation initiation factor 4F complex;0.002245741567353!GO:0000049;tRNA binding;0.0023386793384818!GO:0000785;chromatin;0.00278254759025469!GO:0006414;translational elongation;0.00279677286638045!GO:0006383;transcription from RNA polymerase III promoter;0.00283282166616681!GO:0006402;mRNA catabolic process;0.00283942533553027!GO:0008033;tRNA processing;0.00290747203764506!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00295335961998808!GO:0015980;energy derivation by oxidation of organic compounds;0.00296835190590565!GO:0046483;heterocycle metabolic process;0.00304291915978895!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00304291915978895!GO:0045047;protein targeting to ER;0.00304291915978895!GO:0006917;induction of apoptosis;0.00307067743183802!GO:0004004;ATP-dependent RNA helicase activity;0.003167835504058!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00351048815073641!GO:0003729;mRNA binding;0.0035398887280448!GO:0008610;lipid biosynthetic process;0.00356675587694203!GO:0045045;secretory pathway;0.00370723608149646!GO:0051128;regulation of cellular component organization and biogenesis;0.00375748031176647!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00379525751842729!GO:0015399;primary active transmembrane transporter activity;0.00379525751842729!GO:0044433;cytoplasmic vesicle part;0.00381638707433591!GO:0030031;cell projection biogenesis;0.00386728746411762!GO:0050662;coenzyme binding;0.00425199302513886!GO:0051101;regulation of DNA binding;0.00429971030041856!GO:0012502;induction of programmed cell death;0.00430334336129345!GO:0006650;glycerophospholipid metabolic process;0.00434036070099426!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00437091274301339!GO:0000428;DNA-directed RNA polymerase complex;0.00437091274301339!GO:0030384;phosphoinositide metabolic process;0.00445526460216166!GO:0046467;membrane lipid biosynthetic process;0.00445526460216166!GO:0005815;microtubule organizing center;0.00446426258288013!GO:0008139;nuclear localization sequence binding;0.00449166410906811!GO:0006260;DNA replication;0.00449166410906811!GO:0007050;cell cycle arrest;0.00449812417135326!GO:0016363;nuclear matrix;0.00477223098119507!GO:0003690;double-stranded DNA binding;0.00478325055592177!GO:0043488;regulation of mRNA stability;0.00481274593992748!GO:0043487;regulation of RNA stability;0.00481274593992748!GO:0030521;androgen receptor signaling pathway;0.00495060651777235!GO:0008312;7S RNA binding;0.00496821082819452!GO:0035258;steroid hormone receptor binding;0.00536256334854155!GO:0030833;regulation of actin filament polymerization;0.00542007326187568!GO:0008637;apoptotic mitochondrial changes;0.00543607138030294!GO:0048144;fibroblast proliferation;0.00546996538774086!GO:0048145;regulation of fibroblast proliferation;0.00546996538774086!GO:0030134;ER to Golgi transport vesicle;0.00548052898597511!GO:0015992;proton transport;0.0055706613975701!GO:0051087;chaperone binding;0.00563472175500094!GO:0007010;cytoskeleton organization and biogenesis;0.00599784608855137!GO:0000059;protein import into nucleus, docking;0.00611911429337582!GO:0016272;prefoldin complex;0.00626801515171486!GO:0000087;M phase of mitotic cell cycle;0.00635881496622515!GO:0005694;chromosome;0.00658675781054567!GO:0030503;regulation of cell redox homeostasis;0.00663485066116721!GO:0006818;hydrogen transport;0.00665688360970357!GO:0048146;positive regulation of fibroblast proliferation;0.00667065393295884!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00673262972270681!GO:0003711;transcription elongation regulator activity;0.0067627780771291!GO:0016126;sterol biosynthetic process;0.00700763599318094!GO:0005684;U2-dependent spliceosome;0.00708512964254196!GO:0006082;organic acid metabolic process;0.00710390251190867!GO:0019752;carboxylic acid metabolic process;0.00711639274466268!GO:0012506;vesicle membrane;0.00714258051630236!GO:0016251;general RNA polymerase II transcription factor activity;0.00719767405207322!GO:0044452;nucleolar part;0.00779347652134642!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00790121493687007!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00809065865944442!GO:0008361;regulation of cell size;0.00820778367783456!GO:0045893;positive regulation of transcription, DNA-dependent;0.00834475072692028!GO:0006497;protein amino acid lipidation;0.00840494271960874!GO:0007067;mitosis;0.00850432865810169!GO:0031326;regulation of cellular biosynthetic process;0.00852584765051946!GO:0017166;vinculin binding;0.00852584765051946!GO:0009889;regulation of biosynthetic process;0.00855449244394569!GO:0006950;response to stress;0.00861589556045021!GO:0051287;NAD binding;0.00878615068556357!GO:0006334;nucleosome assembly;0.00885446604751592!GO:0030127;COPII vesicle coat;0.00889706022527537!GO:0012507;ER to Golgi transport vesicle membrane;0.00889706022527537!GO:0043022;ribosome binding;0.00908553910888288!GO:0006506;GPI anchor biosynthetic process;0.00921762603804644!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00923920300675846!GO:0032984;macromolecular complex disassembly;0.0097241104722054!GO:0016481;negative regulation of transcription;0.00983162145419497!GO:0030027;lamellipodium;0.00997937720323149!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0102053188148171!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.010249027255641!GO:0006401;RNA catabolic process;0.0103255587316943!GO:0008243;plasminogen activator activity;0.0103263915598395!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0103655036102398!GO:0008234;cysteine-type peptidase activity;0.0104247996799997!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.010656546601989!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.010656546601989!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0107136336061248!GO:0006749;glutathione metabolic process;0.0107904098886847!GO:0032940;secretion by cell;0.0109518336213285!GO:0015631;tubulin binding;0.0110292071880197!GO:0005869;dynactin complex;0.0113333475195824!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0115721789641356!GO:0048487;beta-tubulin binding;0.0115943231898349!GO:0006505;GPI anchor metabolic process;0.0117069933478179!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0117784490256144!GO:0042158;lipoprotein biosynthetic process;0.0121621445989727!GO:0006509;membrane protein ectodomain proteolysis;0.0124109632525423!GO:0033619;membrane protein proteolysis;0.0124109632525423!GO:0006352;transcription initiation;0.0124702255653407!GO:0031902;late endosome membrane;0.0125267658824813!GO:0030032;lamellipodium biogenesis;0.0126950188104711!GO:0016049;cell growth;0.0127156367598888!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0127914548304275!GO:0005774;vacuolar membrane;0.0129350946283505!GO:0050681;androgen receptor binding;0.0130074400750574!GO:0008652;amino acid biosynthetic process;0.0131839797738311!GO:0006984;ER-nuclear signaling pathway;0.013210851263144!GO:0000096;sulfur amino acid metabolic process;0.0135052132950181!GO:0006354;RNA elongation;0.0138888996807322!GO:0005149;interleukin-1 receptor binding;0.01413100408739!GO:0019222;regulation of metabolic process;0.0144022352442226!GO:0048037;cofactor binding;0.0146598727242006!GO:0007034;vacuolar transport;0.0151697918553396!GO:0043624;cellular protein complex disassembly;0.0152320743560957!GO:0000209;protein polyubiquitination;0.016646049530322!GO:0022406;membrane docking;0.0170801185484338!GO:0048278;vesicle docking;0.0170801185484338!GO:0006611;protein export from nucleus;0.0170801185484338!GO:0003746;translation elongation factor activity;0.0172460171737027!GO:0031497;chromatin assembly;0.0175677366450528!GO:0043241;protein complex disassembly;0.0178428549589705!GO:0045941;positive regulation of transcription;0.0178644719649118!GO:0006595;polyamine metabolic process;0.018315036519565!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0190362808086381!GO:0008601;protein phosphatase type 2A regulator activity;0.0198635493887035!GO:0044427;chromosomal part;0.0199542416871539!GO:0051540;metal cluster binding;0.0200039612187468!GO:0051536;iron-sulfur cluster binding;0.0200039612187468!GO:0032507;maintenance of cellular protein localization;0.020122463469675!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0203864776082894!GO:0008180;signalosome;0.0203864776082894!GO:0030041;actin filament polymerization;0.0204671583897758!GO:0050790;regulation of catalytic activity;0.0205895279634462!GO:0005832;chaperonin-containing T-complex;0.0209598657809282!GO:0006118;electron transport;0.0211496269266836!GO:0001558;regulation of cell growth;0.0212695749671058!GO:0001836;release of cytochrome c from mitochondria;0.0214105004959243!GO:0022411;cellular component disassembly;0.0215591256887901!GO:0030433;ER-associated protein catabolic process;0.0215885979850584!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0215885979850584!GO:0022890;inorganic cation transmembrane transporter activity;0.0217468587365602!GO:0031529;ruffle organization and biogenesis;0.0218210202763149!GO:0022403;cell cycle phase;0.0220781460641642!GO:0016791;phosphoric monoester hydrolase activity;0.0223470748023617!GO:0006892;post-Golgi vesicle-mediated transport;0.0224211432065922!GO:0030145;manganese ion binding;0.0227240864128478!GO:0005758;mitochondrial intermembrane space;0.023385323953477!GO:0051329;interphase of mitotic cell cycle;0.0234959640292886!GO:0046822;regulation of nucleocytoplasmic transport;0.0238424053429675!GO:0006904;vesicle docking during exocytosis;0.0238424053429675!GO:0031625;ubiquitin protein ligase binding;0.0243195128402256!GO:0000159;protein phosphatase type 2A complex;0.024404568538295!GO:0030518;steroid hormone receptor signaling pathway;0.0244990745423287!GO:0031901;early endosome membrane;0.0248415994822206!GO:0000339;RNA cap binding;0.0248880938501489!GO:0005856;cytoskeleton;0.0252588914407892!GO:0006289;nucleotide-excision repair;0.0261246228071173!GO:0008287;protein serine/threonine phosphatase complex;0.0267668391455171!GO:0006695;cholesterol biosynthetic process;0.0272295413504188!GO:0005862;muscle thin filament tropomyosin;0.0273778591526611!GO:0009116;nucleoside metabolic process;0.0274410169657085!GO:0008097;5S rRNA binding;0.0275544755238284!GO:0035035;histone acetyltransferase binding;0.0280520458413243!GO:0043492;ATPase activity, coupled to movement of substances;0.0280754095864054!GO:0048660;regulation of smooth muscle cell proliferation;0.0292246394359479!GO:0051301;cell division;0.0297293052302319!GO:0044437;vacuolar part;0.0300608043364777!GO:0043284;biopolymer biosynthetic process;0.0303570048502563!GO:0003756;protein disulfide isomerase activity;0.0305533338262336!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0305533338262336!GO:0003684;damaged DNA binding;0.0312617769555519!GO:0006643;membrane lipid metabolic process;0.0319517867861766!GO:0065007;biological regulation;0.0320457447326633!GO:0031970;organelle envelope lumen;0.0332031610685232!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0344538049081735!GO:0008426;protein kinase C inhibitor activity;0.0344881607181628!GO:0051336;regulation of hydrolase activity;0.0363617165037972!GO:0043433;negative regulation of transcription factor activity;0.0374016012295648!GO:0031371;ubiquitin conjugating enzyme complex;0.0375915873736454!GO:0005765;lysosomal membrane;0.0375915873736454!GO:0008629;induction of apoptosis by intracellular signals;0.0395563159728506!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0396362248429119!GO:0006520;amino acid metabolic process;0.0399617672465155!GO:0033130;acetylcholine receptor binding;0.040045516613564!GO:0051325;interphase;0.0400547470503928!GO:0004680;casein kinase activity;0.0400547470503928!GO:0008320;protein transmembrane transporter activity;0.0400547470503928!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0402083129299032!GO:0022884;macromolecule transmembrane transporter activity;0.0403616190193735!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0403616190193735!GO:0045334;clathrin-coated endocytic vesicle;0.0403616190193735!GO:0051651;maintenance of cellular localization;0.0404316480894108!GO:0007004;telomere maintenance via telomerase;0.0409292097838463!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0410026700438218!GO:0006405;RNA export from nucleus;0.0410151059449062!GO:0031418;L-ascorbic acid binding;0.0411523475783017!GO:0007040;lysosome organization and biogenesis;0.0413601819832013!GO:0005669;transcription factor TFIID complex;0.0415083641353927!GO:0030984;kininogen binding;0.0415227689711929!GO:0004213;cathepsin B activity;0.0415227689711929!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0416205553272646!GO:0051272;positive regulation of cell motility;0.0416622343466696!GO:0040017;positive regulation of locomotion;0.0416622343466696!GO:0008538;proteasome activator activity;0.0416622343466696!GO:0009112;nucleobase metabolic process;0.0416622343466696!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0422449014433098!GO:0033043;regulation of organelle organization and biogenesis;0.0422449014433098!GO:0006767;water-soluble vitamin metabolic process;0.0425239859949125!GO:0007032;endosome organization and biogenesis;0.0426291031923578!GO:0030911;TPR domain binding;0.042860017014713!GO:0006144;purine base metabolic process;0.0431864036022986!GO:0030100;regulation of endocytosis;0.0431995768894315!GO:0046519;sphingoid metabolic process;0.0435293724473826!GO:0004721;phosphoprotein phosphatase activity;0.0435826300126531!GO:0004674;protein serine/threonine kinase activity;0.0441437577670503!GO:0043281;regulation of caspase activity;0.0446521943821663!GO:0005784;translocon complex;0.0448192535223221!GO:0004722;protein serine/threonine phosphatase activity;0.0449426020544586!GO:0006740;NADPH regeneration;0.0450249254842642!GO:0006098;pentose-phosphate shunt;0.0450249254842642!GO:0016408;C-acyltransferase activity;0.0452616275122985!GO:0044255;cellular lipid metabolic process;0.0453989514857823!GO:0006518;peptide metabolic process;0.045934682776156!GO:0005637;nuclear inner membrane;0.0460051665837704!GO:0044262;cellular carbohydrate metabolic process;0.0465356201940793!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0465356201940793!GO:0015002;heme-copper terminal oxidase activity;0.0465356201940793!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0465356201940793!GO:0004129;cytochrome-c oxidase activity;0.0465356201940793!GO:0046983;protein dimerization activity;0.0465356201940793!GO:0031272;regulation of pseudopodium formation;0.0465356201940793!GO:0031269;pseudopodium formation;0.0465356201940793!GO:0031344;regulation of cell projection organization and biogenesis;0.0465356201940793!GO:0031268;pseudopodium organization and biogenesis;0.0465356201940793!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0465356201940793!GO:0031274;positive regulation of pseudopodium formation;0.0465356201940793!GO:0000287;magnesium ion binding;0.0468898437781439!GO:0051052;regulation of DNA metabolic process;0.0471830659817596!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0471830659817596!GO:0010257;NADH dehydrogenase complex assembly;0.0471830659817596!GO:0033108;mitochondrial respiratory chain complex assembly;0.0471830659817596!GO:0030140;trans-Golgi network transport vesicle;0.0475845762196026!GO:0007021;tubulin folding;0.0478931819722529!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0479062626812879!GO:0006607;NLS-bearing substrate import into nucleus;0.0480811963833853!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0482024739777743!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0482024739777743!GO:0051059;NF-kappaB binding;0.0484260955811896!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0485809841969823!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.048663823629255!GO:0012510;trans-Golgi network transport vesicle membrane;0.048663823629255!GO:0006733;oxidoreduction coenzyme metabolic process;0.0488760419627128!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0490218172903435!GO:0031301;integral to organelle membrane;0.0493310893079387!GO:0007041;lysosomal transport;0.0493310893079387!GO:0000082;G1/S transition of mitotic cell cycle;0.0493310893079387!GO:0045792;negative regulation of cell size;0.0493839866648916!GO:0007030;Golgi organization and biogenesis;0.0495479032721969!GO:0016311;dephosphorylation;0.0497652370100301!GO:0048661;positive regulation of smooth muscle cell proliferation;0.0497995154302081!GO:0004197;cysteine-type endopeptidase activity;0.0499543027683361
|sample_id=11256
|sample_id=11256
|sample_note=
|sample_note=
Line 76: Line 106:
|sample_tissue=lung
|sample_tissue=lung
|top_motifs=TBX4,5:2.57567062192;TP53:2.26545298905;ZEB1:2.02721516287;TEF:1.98432170019;PPARG:1.94285274747;HIF1A:1.69518714745;SNAI1..3:1.60160122063;VSX1,2:1.27717533249;MYOD1:1.24804721494;NKX2-2,8:1.19346155503;ONECUT1,2:1.17518335877;HOX{A4,D4}:0.968922153354;ADNP_IRX_SIX_ZHX:0.96275527045;TEAD1:0.95378758598;NKX3-2:0.924467226586;TFCP2:0.89681759554;HAND1,2:0.851417772994;UFEwm:0.838301735272;PAX4:0.826130776781;PAX1,9:0.820681185295;T:0.815486075552;ARID5B:0.77263668612;FOXQ1:0.742454837232;ELK1,4_GABP{A,B1}:0.728844461636;NKX2-1,4:0.705151552246;HSF1,2:0.701476262146;TLX2:0.657444671195;NKX2-3_NKX2-5:0.638713638237;HLF:0.622978564914;SPZ1:0.611429482649;CRX:0.601345761447;ZNF148:0.59086170358;LMO2:0.582496962764;CEBPA,B_DDIT3:0.578137852563;IKZF1:0.56823058149;FOS_FOS{B,L1}_JUN{B,D}:0.499788444643;TBP:0.492646439258;GLI1..3:0.460888474948;FOSL2:0.457452061061;XCPE1{core}:0.44913690296;SOX17:0.448119848038;SP1:0.421165267517;bHLH_family:0.420767608522;FOXM1:0.420263187189;BACH2:0.339361994371;MTF1:0.337381863538;KLF4:0.33077484453;FOXN1:0.319190283862;FOXL1:0.316710875494;ESR1:0.297470012536;EVI1:0.253446805782;LHX3,4:0.222480992585;STAT5{A,B}:0.206599816926;PDX1:0.172652138112;PAX5:0.168855834747;TFAP2{A,C}:0.160721942302;NR6A1:0.152521611356;NKX3-1:0.147464921591;CDC5L:0.144805549179;NR5A1,2:0.140293529235;HMX1:0.139126820326;HMGA1,2:0.129158869537;NFIL3:0.12472042446;ZBTB6:0.122562197236;MAFB:0.0821821668727;PAX2:0.0806434747503;EP300:0.0759453788246;ZNF238:0.0588294499704;NFE2:0.0460920448165;RBPJ:0.0404975253404;EBF1:0.0371564349485;ATF4:0.0310203567542;MAZ:0.0297483950387;ALX4:0.0176842116075;PAX6:0.0156406053124;ELF1,2,4:0.0113508979592;POU6F1:0.00603596207525;REST:-0.00201286053028;AR:-0.0155689504753;FOXO1,3,4:-0.0204642334099;MYBL2:-0.0382584870213;ZIC1..3:-0.0509616891608;NFIX:-0.053935020148;NR1H4:-0.0546335215609;SMAD1..7,9:-0.0572210444739;TFAP4:-0.0629215665427;ZNF143:-0.0837384145903;NHLH1,2:-0.0881795502337;HNF1A:-0.105394221152;PAX8:-0.105972211353;NFKB1_REL_RELA:-0.108347422848;FOX{F1,F2,J1}:-0.115604303192;TLX1..3_NFIC{dimer}:-0.120228651563;ZBTB16:-0.128418903927;GZF1:-0.137516990536;AIRE:-0.139390980682;ZNF423:-0.140880000598;EN1,2:-0.158320681435;IRF7:-0.165564467154;POU3F1..4:-0.169405721617;GFI1B:-0.195522881323;NRF1:-0.205547469845;POU2F1..3:-0.209262857761;RXR{A,B,G}:-0.209955784575;STAT2,4,6:-0.218557898888;YY1:-0.242082785142;SOX2:-0.262878616002;HOX{A5,B5}:-0.2768712306;NANOG:-0.279297889597;STAT1,3:-0.279455739901;LEF1_TCF7_TCF7L1,2:-0.292510259779;GTF2A1,2:-0.297694385146;ATF6:-0.303774400354;FOX{I1,J2}:-0.306810135868;MED-1{core}:-0.319089767493;HOX{A6,A7,B6,B7}:-0.321857421414;RXRA_VDR{dimer}:-0.329047361535;ETS1,2:-0.337707140282;FOXP3:-0.337797557874;POU1F1:-0.341044076889;ATF5_CREB3:-0.348117905497;HIC1:-0.364657964291;SPI1:-0.365632303175;HNF4A_NR2F1,2:-0.368604999058;TOPORS:-0.378389273268;TFAP2B:-0.381812952233;HES1:-0.390395903919;GTF2I:-0.394281573078;OCT4_SOX2{dimer}:-0.408553282611;GATA6:-0.411899733946;NR3C1:-0.417390259456;NKX6-1,2:-0.419543457987;MYB:-0.42805229423;NFE2L2:-0.438475085852;MYFfamily:-0.459695886429;NFE2L1:-0.461753181336;AHR_ARNT_ARNT2:-0.463229770238;JUN:-0.481084330334;CDX1,2,4:-0.491677244109;RREB1:-0.497013386796;ZFP161:-0.500545655491;SPIB:-0.507228317312;MTE{core}:-0.523469362342;ZNF384:-0.528750222377;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.536863013253;CREB1:-0.543865496871;RFX1:-0.549620930579;ALX1:-0.594162741592;GCM1,2:-0.61427588819;PRDM1:-0.615849799574;RORA:-0.627013327378;RFX2..5_RFXANK_RFXAP:-0.627822313274;RUNX1..3:-0.628144752719;FOXA2:-0.628622129184;EGR1..3:-0.632138847641;ATF2:-0.642002502124;PITX1..3:-0.653200182958;ESRRA:-0.658971229405;POU5F1:-0.68240169846;NANOG{mouse}:-0.695276280385;PRRX1,2:-0.714833850847;DBP:-0.718166154093;SRF:-0.722862627536;HOXA9_MEIS1:-0.727158340648;MEF2{A,B,C,D}:-0.746389728806;FOX{D1,D2}:-0.784316542616;PBX1:-0.791372419047;PATZ1:-0.794489354376;TFDP1:-0.79820749074;BPTF:-0.827898904999;GFI1:-0.845638809371;CUX2:-0.852460279804;IRF1,2:-0.898252152296;E2F1..5:-0.923450633802;NFATC1..3:-0.923720824314;NFY{A,B,C}:-0.929248862475;FOXP1:-0.935611456099;DMAP1_NCOR{1,2}_SMARC:-0.962434802066;SREBF1,2:-0.974142691251;HBP1_HMGB_SSRP1_UBTF:-0.980501850108;IKZF2:-0.981986446008;MZF1:-1.02055847125;SOX{8,9,10}:-1.02270900006;TGIF1:-1.02736806599;TAL1_TCF{3,4,12}:-1.05712725252;GATA4:-1.11050415725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.1186697119;XBP1:-1.16512637296;BREu{core}:-1.23928871479;FOXD3:-1.33312042038;PAX3,7:-1.45023696828;SOX5:-1.4980414842
|top_motifs=TBX4,5:2.57567062192;TP53:2.26545298905;ZEB1:2.02721516287;TEF:1.98432170019;PPARG:1.94285274747;HIF1A:1.69518714745;SNAI1..3:1.60160122063;VSX1,2:1.27717533249;MYOD1:1.24804721494;NKX2-2,8:1.19346155503;ONECUT1,2:1.17518335877;HOX{A4,D4}:0.968922153354;ADNP_IRX_SIX_ZHX:0.96275527045;TEAD1:0.95378758598;NKX3-2:0.924467226586;TFCP2:0.89681759554;HAND1,2:0.851417772994;UFEwm:0.838301735272;PAX4:0.826130776781;PAX1,9:0.820681185295;T:0.815486075552;ARID5B:0.77263668612;FOXQ1:0.742454837232;ELK1,4_GABP{A,B1}:0.728844461636;NKX2-1,4:0.705151552246;HSF1,2:0.701476262146;TLX2:0.657444671195;NKX2-3_NKX2-5:0.638713638237;HLF:0.622978564914;SPZ1:0.611429482649;CRX:0.601345761447;ZNF148:0.59086170358;LMO2:0.582496962764;CEBPA,B_DDIT3:0.578137852563;IKZF1:0.56823058149;FOS_FOS{B,L1}_JUN{B,D}:0.499788444643;TBP:0.492646439258;GLI1..3:0.460888474948;FOSL2:0.457452061061;XCPE1{core}:0.44913690296;SOX17:0.448119848038;SP1:0.421165267517;bHLH_family:0.420767608522;FOXM1:0.420263187189;BACH2:0.339361994371;MTF1:0.337381863538;KLF4:0.33077484453;FOXN1:0.319190283862;FOXL1:0.316710875494;ESR1:0.297470012536;EVI1:0.253446805782;LHX3,4:0.222480992585;STAT5{A,B}:0.206599816926;PDX1:0.172652138112;PAX5:0.168855834747;TFAP2{A,C}:0.160721942302;NR6A1:0.152521611356;NKX3-1:0.147464921591;CDC5L:0.144805549179;NR5A1,2:0.140293529235;HMX1:0.139126820326;HMGA1,2:0.129158869537;NFIL3:0.12472042446;ZBTB6:0.122562197236;MAFB:0.0821821668727;PAX2:0.0806434747503;EP300:0.0759453788246;ZNF238:0.0588294499704;NFE2:0.0460920448165;RBPJ:0.0404975253404;EBF1:0.0371564349485;ATF4:0.0310203567542;MAZ:0.0297483950387;ALX4:0.0176842116075;PAX6:0.0156406053124;ELF1,2,4:0.0113508979592;POU6F1:0.00603596207525;REST:-0.00201286053028;AR:-0.0155689504753;FOXO1,3,4:-0.0204642334099;MYBL2:-0.0382584870213;ZIC1..3:-0.0509616891608;NFIX:-0.053935020148;NR1H4:-0.0546335215609;SMAD1..7,9:-0.0572210444739;TFAP4:-0.0629215665427;ZNF143:-0.0837384145903;NHLH1,2:-0.0881795502337;HNF1A:-0.105394221152;PAX8:-0.105972211353;NFKB1_REL_RELA:-0.108347422848;FOX{F1,F2,J1}:-0.115604303192;TLX1..3_NFIC{dimer}:-0.120228651563;ZBTB16:-0.128418903927;GZF1:-0.137516990536;AIRE:-0.139390980682;ZNF423:-0.140880000598;EN1,2:-0.158320681435;IRF7:-0.165564467154;POU3F1..4:-0.169405721617;GFI1B:-0.195522881323;NRF1:-0.205547469845;POU2F1..3:-0.209262857761;RXR{A,B,G}:-0.209955784575;STAT2,4,6:-0.218557898888;YY1:-0.242082785142;SOX2:-0.262878616002;HOX{A5,B5}:-0.2768712306;NANOG:-0.279297889597;STAT1,3:-0.279455739901;LEF1_TCF7_TCF7L1,2:-0.292510259779;GTF2A1,2:-0.297694385146;ATF6:-0.303774400354;FOX{I1,J2}:-0.306810135868;MED-1{core}:-0.319089767493;HOX{A6,A7,B6,B7}:-0.321857421414;RXRA_VDR{dimer}:-0.329047361535;ETS1,2:-0.337707140282;FOXP3:-0.337797557874;POU1F1:-0.341044076889;ATF5_CREB3:-0.348117905497;HIC1:-0.364657964291;SPI1:-0.365632303175;HNF4A_NR2F1,2:-0.368604999058;TOPORS:-0.378389273268;TFAP2B:-0.381812952233;HES1:-0.390395903919;GTF2I:-0.394281573078;OCT4_SOX2{dimer}:-0.408553282611;GATA6:-0.411899733946;NR3C1:-0.417390259456;NKX6-1,2:-0.419543457987;MYB:-0.42805229423;NFE2L2:-0.438475085852;MYFfamily:-0.459695886429;NFE2L1:-0.461753181336;AHR_ARNT_ARNT2:-0.463229770238;JUN:-0.481084330334;CDX1,2,4:-0.491677244109;RREB1:-0.497013386796;ZFP161:-0.500545655491;SPIB:-0.507228317312;MTE{core}:-0.523469362342;ZNF384:-0.528750222377;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.536863013253;CREB1:-0.543865496871;RFX1:-0.549620930579;ALX1:-0.594162741592;GCM1,2:-0.61427588819;PRDM1:-0.615849799574;RORA:-0.627013327378;RFX2..5_RFXANK_RFXAP:-0.627822313274;RUNX1..3:-0.628144752719;FOXA2:-0.628622129184;EGR1..3:-0.632138847641;ATF2:-0.642002502124;PITX1..3:-0.653200182958;ESRRA:-0.658971229405;POU5F1:-0.68240169846;NANOG{mouse}:-0.695276280385;PRRX1,2:-0.714833850847;DBP:-0.718166154093;SRF:-0.722862627536;HOXA9_MEIS1:-0.727158340648;MEF2{A,B,C,D}:-0.746389728806;FOX{D1,D2}:-0.784316542616;PBX1:-0.791372419047;PATZ1:-0.794489354376;TFDP1:-0.79820749074;BPTF:-0.827898904999;GFI1:-0.845638809371;CUX2:-0.852460279804;IRF1,2:-0.898252152296;E2F1..5:-0.923450633802;NFATC1..3:-0.923720824314;NFY{A,B,C}:-0.929248862475;FOXP1:-0.935611456099;DMAP1_NCOR{1,2}_SMARC:-0.962434802066;SREBF1,2:-0.974142691251;HBP1_HMGB_SSRP1_UBTF:-0.980501850108;IKZF2:-0.981986446008;MZF1:-1.02055847125;SOX{8,9,10}:-1.02270900006;TGIF1:-1.02736806599;TAL1_TCF{3,4,12}:-1.05712725252;GATA4:-1.11050415725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.1186697119;XBP1:-1.16512637296;BREu{core}:-1.23928871479;FOXD3:-1.33312042038;PAX3,7:-1.45023696828;SOX5:-1.4980414842
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11256-116F5;search_select_hide=table117:FF:11256-116F5
}}
}}

Latest revision as of 16:28, 3 June 2020

Name:Small Airway Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10884
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage19 years old adult
sexfemale
age19
cell typepneumocyte
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005878
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10884 CAGE DRX008464 DRR009336
Accession ID Hg19

Library idBAMCTSS
CNhs10884 DRZ000761 DRZ002146
Accession ID Hg38

Library idBAMCTSS
CNhs10884 DRZ012111 DRZ013496
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10047downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005878
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GTAGAG sRNA-Seq DRX037102 DRR041468
Accession ID Hg19

Library idBAMCTSS
SRhi10007.GTAGAG DRZ007110


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0229
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.351
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.299
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0664
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0708
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0653
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.124
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0351
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.366
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0842
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.051
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.371
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0066
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.799
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.529
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.323
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.424
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.539
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10884

Jaspar motifP-value
MA0002.20.435
MA0003.10.636
MA0004.10.108
MA0006.10.0307
MA0007.10.596
MA0009.10.339
MA0014.10.185
MA0017.10.905
MA0018.26.63592e-4
MA0019.10.33
MA0024.17.89445e-7
MA0025.10.589
MA0027.10.689
MA0028.10.017
MA0029.10.288
MA0030.10.601
MA0031.10.577
MA0035.20.713
MA0038.10.00182
MA0039.20.00497
MA0040.10.166
MA0041.10.661
MA0042.10.501
MA0043.10.901
MA0046.10.894
MA0047.20.0316
MA0048.10.938
MA0050.13.84718e-8
MA0051.11.81847e-4
MA0052.10.00334
MA0055.10.154
MA0057.10.0423
MA0058.10.0296
MA0059.10.752
MA0060.11.35903e-9
MA0061.10.613
MA0062.20.269
MA0065.20.0884
MA0066.10.212
MA0067.10.0555
MA0068.10.00727
MA0069.10.183
MA0070.10.424
MA0071.10.244
MA0072.10.469
MA0073.10.714
MA0074.10.76
MA0076.10.205
MA0077.10.954
MA0078.10.862
MA0079.20.376
MA0080.20.00145
MA0081.10.166
MA0083.10.0446
MA0084.10.219
MA0087.10.652
MA0088.10.795
MA0090.10.00184
MA0091.10.305
MA0092.10.89
MA0093.10.0689
MA0099.25.20806e-5
MA0100.10.12
MA0101.10.224
MA0102.20.508
MA0103.12.10649e-8
MA0104.20.338
MA0105.10.731
MA0106.19.7644e-12
MA0107.10.269
MA0108.20.0329
MA0111.10.709
MA0112.20.0945
MA0113.10.714
MA0114.10.661
MA0115.10.628
MA0116.10.201
MA0117.10.63
MA0119.10.447
MA0122.10.734
MA0124.10.75
MA0125.10.13
MA0131.10.65
MA0135.10.431
MA0136.10.0589
MA0137.20.144
MA0138.20.632
MA0139.10.24
MA0140.10.467
MA0141.10.94
MA0142.10.701
MA0143.10.556
MA0144.10.947
MA0145.10.0076
MA0146.10.212
MA0147.10.535
MA0148.10.00649
MA0149.10.12
MA0150.10.855
MA0152.10.553
MA0153.10.296
MA0154.10.55
MA0155.10.656
MA0156.10.359
MA0157.10.221
MA0159.10.0128
MA0160.10.621
MA0162.10.142
MA0163.10.606
MA0164.10.636
MA0258.10.816
MA0259.10.673



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10884

Novel motifP-value
10.538
100.736
1000.771
1010.217
1020.397
1030.035
1040.912
1050.764
1060.0372
1070.123
1080.195
1090.00188
110.399
1100.28
1110.167
1120.143
1130.564
1140.107
1150.379
1160.987
1170.243
1180.801
1190.394
120.415
1200.00998
1210.411
1220.453
1230.282
1240.0637
1250.131
1260.708
1270.339
1280.631
1290.187
130.0542
1300.0603
1310.722
1320.164
1337.46865e-4
1340.318
1350.912
1360.01
1370.056
1380.572
1390.0729
140.822
1400.323
1410.549
1420.548
1430.58
1440.235
1450.945
1460.123
1470.116
1480.685
1490.345
150.877
1500.282
1510.336
1520.00483
1530.331
1540.982
1550.814
1560.969
1570.814
1580.195
1590.561
160.00261
1600.689
1610.898
1620.635
1630.898
1640.191
1650.946
1660.36
1670.718
1680.595
1690.0778
170.376
180.221
190.746
20.23
200.801
210.293
220.648
230.237
240.00914
250.994
260.939
270.545
280.713
290.137
30.414
300.272
310.743
320.795
330.0557
340.265
350.371
360.679
370.0823
380.608
390.283
40.825
400.164
410.14
420.609
430.526
440.231
450.265
460.644
470.248
480.131
490.452
50.936
500.593
510.836
520.28
530.162
540.755
550.206
560.538
570.52
580.645
590.273
60.441
600.192
610.703
620.657
630.177
640.663
650.669
660.898
670.395
680.133
690.517
70.592
700.00206
710.214
720.435
730.00148
740.0918
750.152
760.659
770.04
780.0304
790.996
80.37
800.72
810.538
820.588
830.642
840.556
850.248
860.878
870.00721
880.793
890.0438
90.397
900.989
910.589
920.515
930.461
940.775
950.0462
960.552
970.892
980.359
990.238



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10884


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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