FF:11256-116F5: Difference between revisions

Latest revision as of 16:28, 3 June 2020

Name:	Small Airway Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10884
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	19 years old adult
sex	female
age	19
cell type	pneumocyte
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005878

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10884		CAGE		DRX008464		DRR009336

Accession ID Hg19

Library id		BAM		CTSS
CNhs10884		DRZ000761		DRZ002146

Accession ID Hg38

Library id		BAM		CTSS
CNhs10884		DRZ012111		DRZ013496

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10047		download		download		download		download

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005878

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10007.GTAGAG		sRNA-Seq		DRX037102		DRR041468

Accession ID Hg19

Library id		BAM		CTSS
SRhi10007.GTAGAG		DRZ007110

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0229
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.351
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.299
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0664
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0708
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0653
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.124
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0351
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.366
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0842
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.051
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.371
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0066
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.799
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.529
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.323
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.424
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.539
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10884

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.435
MA0003.1	MA0003.1	0.636
MA0004.1	MA0004.1	0.108
MA0006.1	MA0006.1	0.0307
MA0007.1	MA0007.1	0.596
MA0009.1	MA0009.1	0.339
MA0014.1	MA0014.1	0.185
MA0017.1	MA0017.1	0.905
MA0018.2	MA0018.2	6.63592e-4
MA0019.1	MA0019.1	0.33
MA0024.1	MA0024.1	7.89445e-7
MA0025.1	MA0025.1	0.589
MA0027.1	MA0027.1	0.689
MA0028.1	MA0028.1	0.017
MA0029.1	MA0029.1	0.288
MA0030.1	MA0030.1	0.601
MA0031.1	MA0031.1	0.577
MA0035.2	MA0035.2	0.713
MA0038.1	MA0038.1	0.00182
MA0039.2	MA0039.2	0.00497
MA0040.1	MA0040.1	0.166
MA0041.1	MA0041.1	0.661
MA0042.1	MA0042.1	0.501
MA0043.1	MA0043.1	0.901
MA0046.1	MA0046.1	0.894
MA0047.2	MA0047.2	0.0316
MA0048.1	MA0048.1	0.938
MA0050.1	MA0050.1	3.84718e-8
MA0051.1	MA0051.1	1.81847e-4
MA0052.1	MA0052.1	0.00334
MA0055.1	MA0055.1	0.154
MA0057.1	MA0057.1	0.0423
MA0058.1	MA0058.1	0.0296
MA0059.1	MA0059.1	0.752
MA0060.1	MA0060.1	1.35903e-9
MA0061.1	MA0061.1	0.613
MA0062.2	MA0062.2	0.269
MA0065.2	MA0065.2	0.0884
MA0066.1	MA0066.1	0.212
MA0067.1	MA0067.1	0.0555
MA0068.1	MA0068.1	0.00727
MA0069.1	MA0069.1	0.183
MA0070.1	MA0070.1	0.424
MA0071.1	MA0071.1	0.244
MA0072.1	MA0072.1	0.469
MA0073.1	MA0073.1	0.714
MA0074.1	MA0074.1	0.76
MA0076.1	MA0076.1	0.205
MA0077.1	MA0077.1	0.954
MA0078.1	MA0078.1	0.862
MA0079.2	MA0079.2	0.376
MA0080.2	MA0080.2	0.00145
MA0081.1	MA0081.1	0.166
MA0083.1	MA0083.1	0.0446
MA0084.1	MA0084.1	0.219
MA0087.1	MA0087.1	0.652
MA0088.1	MA0088.1	0.795
MA0090.1	MA0090.1	0.00184
MA0091.1	MA0091.1	0.305
MA0092.1	MA0092.1	0.89
MA0093.1	MA0093.1	0.0689
MA0099.2	MA0099.2	5.20806e-5
MA0100.1	MA0100.1	0.12
MA0101.1	MA0101.1	0.224
MA0102.2	MA0102.2	0.508
MA0103.1	MA0103.1	2.10649e-8
MA0104.2	MA0104.2	0.338
MA0105.1	MA0105.1	0.731
MA0106.1	MA0106.1	9.7644e-12
MA0107.1	MA0107.1	0.269
MA0108.2	MA0108.2	0.0329
MA0111.1	MA0111.1	0.709
MA0112.2	MA0112.2	0.0945
MA0113.1	MA0113.1	0.714
MA0114.1	MA0114.1	0.661
MA0115.1	MA0115.1	0.628
MA0116.1	MA0116.1	0.201
MA0117.1	MA0117.1	0.63
MA0119.1	MA0119.1	0.447
MA0122.1	MA0122.1	0.734
MA0124.1	MA0124.1	0.75
MA0125.1	MA0125.1	0.13
MA0131.1	MA0131.1	0.65
MA0135.1	MA0135.1	0.431
MA0136.1	MA0136.1	0.0589
MA0137.2	MA0137.2	0.144
MA0138.2	MA0138.2	0.632
MA0139.1	MA0139.1	0.24
MA0140.1	MA0140.1	0.467
MA0141.1	MA0141.1	0.94
MA0142.1	MA0142.1	0.701
MA0143.1	MA0143.1	0.556
MA0144.1	MA0144.1	0.947
MA0145.1	MA0145.1	0.0076
MA0146.1	MA0146.1	0.212
MA0147.1	MA0147.1	0.535
MA0148.1	MA0148.1	0.00649
MA0149.1	MA0149.1	0.12
MA0150.1	MA0150.1	0.855
MA0152.1	MA0152.1	0.553
MA0153.1	MA0153.1	0.296
MA0154.1	MA0154.1	0.55
MA0155.1	MA0155.1	0.656
MA0156.1	MA0156.1	0.359
MA0157.1	MA0157.1	0.221
MA0159.1	MA0159.1	0.0128
MA0160.1	MA0160.1	0.621
MA0162.1	MA0162.1	0.142
MA0163.1	MA0163.1	0.606
MA0164.1	MA0164.1	0.636
MA0258.1	MA0258.1	0.816
MA0259.1	MA0259.1	0.673

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10884

Novel motif	Logo	P-value
1	1	0.538
10	10	0.736
100	100	0.771
101	101	0.217
102	102	0.397
103	103	0.035
104	104	0.912
105	105	0.764
106	106	0.0372
107	107	0.123
108	108	0.195
109	109	0.00188
11	11	0.399
110	110	0.28
111	111	0.167
112	112	0.143
113	113	0.564
114	114	0.107
115	115	0.379
116	116	0.987
117	117	0.243
118	118	0.801
119	119	0.394
12	12	0.415
120	120	0.00998
121	121	0.411
122	122	0.453
123	123	0.282
124	124	0.0637
125	125	0.131
126	126	0.708
127	127	0.339
128	128	0.631
129	129	0.187
13	13	0.0542
130	130	0.0603
131	131	0.722
132	132	0.164
133	133	7.46865e-4
134	134	0.318
135	135	0.912
136	136	0.01
137	137	0.056
138	138	0.572
139	139	0.0729
14	14	0.822
140	140	0.323
141	141	0.549
142	142	0.548
143	143	0.58
144	144	0.235
145	145	0.945
146	146	0.123
147	147	0.116
148	148	0.685
149	149	0.345
15	15	0.877
150	150	0.282
151	151	0.336
152	152	0.00483
153	153	0.331
154	154	0.982
155	155	0.814
156	156	0.969
157	157	0.814
158	158	0.195
159	159	0.561
16	16	0.00261
160	160	0.689
161	161	0.898
162	162	0.635
163	163	0.898
164	164	0.191
165	165	0.946
166	166	0.36
167	167	0.718
168	168	0.595
169	169	0.0778
17	17	0.376
18	18	0.221
19	19	0.746
2	2	0.23
20	20	0.801
21	21	0.293
22	22	0.648
23	23	0.237
24	24	0.00914
25	25	0.994
26	26	0.939
27	27	0.545
28	28	0.713
29	29	0.137
3	3	0.414
30	30	0.272
31	31	0.743
32	32	0.795
33	33	0.0557
34	34	0.265
35	35	0.371
36	36	0.679
37	37	0.0823
38	38	0.608
39	39	0.283
4	4	0.825
40	40	0.164
41	41	0.14
42	42	0.609
43	43	0.526
44	44	0.231
45	45	0.265
46	46	0.644
47	47	0.248
48	48	0.131
49	49	0.452
5	5	0.936
50	50	0.593
51	51	0.836
52	52	0.28
53	53	0.162
54	54	0.755
55	55	0.206
56	56	0.538
57	57	0.52
58	58	0.645
59	59	0.273
6	6	0.441
60	60	0.192
61	61	0.703
62	62	0.657
63	63	0.177
64	64	0.663
65	65	0.669
66	66	0.898
67	67	0.395
68	68	0.133
69	69	0.517
7	7	0.592
70	70	0.00206
71	71	0.214
72	72	0.435
73	73	0.00148
74	74	0.0918
75	75	0.152
76	76	0.659
77	77	0.04
78	78	0.0304
79	79	0.996
8	8	0.37
80	80	0.72
81	81	0.538
82	82	0.588
83	83	0.642
84	84	0.556
85	85	0.248
86	86	0.878
87	87	0.00721
88	88	0.793
89	89	0.0438
9	9	0.397
90	90	0.989
91	91	0.589
92	92	0.515
93	93	0.461
94	94	0.775
95	95	0.0462
96	96	0.552
97	97	0.892
98	98	0.359
99	99	0.238

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10884

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000166 human small airway epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11256-116F5
+|DRA_sample_Accession=CAGE@SAMD00005878
-|name=Small Airway Epithelial Cells, donor1
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005878
-|sample_id=11256
+|HumanCAGEScanFiles=NCig10047;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.NCig10047.11256-116F5.hg19.GCTATA.pairs.bed.gz
-|rna_tube_id=116F5
+|accession_numbers=CAGE;DRX008464;DRR009336;DRZ000761;DRZ002146;DRZ012111;DRZ013496
-|rna_box=116
+|accession_numbers_RNASeq=sRNA-Seq;DRX037102;DRR041468;DRZ007110
-|rna_position=F5
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
-|sample_cell_lot=lot:4F0715
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
-|sample_cell_catalog=CC-2547
-|sample_company=Lonza
-|rna_lot_number=
-|rna_catalog_number=N/A
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=19 years old adult
-|sample_tissue=lung
-|sample_donor(cell lot)=
-|sample_sex=female
-|sample_age=19
-|sample_ethnicity=C
-|rna_rin=10
-|rna_od260/230=2.11
-|rna_od260/280=2.026666667
-|sample_cell_type=pneumocyte
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=35.45666667
-|rna_concentration=1.611666667
-|sample_note=
-|profile_hcage=CNhs10884,LSID703,release008,COMPLETED
-|profile_cagescan=NCig10047,,,
-|profile_srnaseq=SRhi10007,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000548,CL:0002076,CL:0002321,CL:0002368,CL:0002371
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000065,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001004,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0005423
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000166
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
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 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 44: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor1.CNhs10884.11256-116F5.hg38.nobarcode.ctss.bed.gz
+|id=FF:11256-116F5
+|is_a=EFO:0002091;;FF:0000166
+|is_obsolete=
+|library_id=CNhs10884
+|library_id_phase_based=2:CNhs10884
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11256
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTAGAG.11256
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11256
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTAGAG.11256
+|name=Small Airway Epithelial Cells, donor1
+|namespace=FANTOM5
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+|profile_hcage=CNhs10884,LSID703,release008,COMPLETED
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+|rna_catalog_number=N/A
+|rna_concentration=1.611666667
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
+|rna_lot_number=
+|rna_od260/230=2.11
+|rna_od260/280=2.026666667
+|rna_position=F5
+|rna_rin=10
+|rna_sample_type=total RNA
+|rna_tube_id=116F5
+|rna_weight_ug=35.45666667
+|rnaseq_library_id=SRhi10007.GTAGAG
+|sample_age=19
+|sample_category=primary cells
+|sample_cell_catalog=CC-2547
+|sample_cell_line=
+|sample_cell_lot=lot:4F0715
+|sample_cell_type=pneumocyte
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Lonza
+|sample_description=
+|sample_dev_stage=19 years old adult
+|sample_disease=
+|sample_donor(cell lot)=
+|sample_ethnicity=C
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.26030985196063e-226!GO:0005737;cytoplasm;8.09041869121688e-201!GO:0043226;organelle;3.81591885985963e-169!GO:0043229;intracellular organelle;1.21916694723262e-168!GO:0043231;intracellular membrane-bound organelle;7.21727271147333e-157!GO:0043227;membrane-bound organelle;1.28903563045069e-156!GO:0044444;cytoplasmic part;8.60303269632151e-135!GO:0044422;organelle part;6.25660896343208e-125!GO:0044446;intracellular organelle part;1.54297171981269e-123!GO:0032991;macromolecular complex;7.03114716873802e-86!GO:0030529;ribonucleoprotein complex;6.75058370605535e-80!GO:0044238;primary metabolic process;3.7772662044885e-77!GO:0044237;cellular metabolic process;1.99735406394613e-76!GO:0005515;protein binding;1.03849770086417e-71!GO:0043170;macromolecule metabolic process;1.73137834345433e-68!GO:0043233;organelle lumen;7.45220601640133e-64!GO:0031974;membrane-enclosed lumen;7.45220601640133e-64!GO:0005739;mitochondrion;3.52002739903704e-61!GO:0003723;RNA binding;8.48975725627499e-59!GO:0044428;nuclear part;3.45400708227974e-56!GO:0019538;protein metabolic process;4.91223104688019e-56!GO:0031090;organelle membrane;1.12189894091561e-54!GO:0006412;translation;2.24678043295055e-50!GO:0005840;ribosome;4.69306544411524e-50!GO:0033036;macromolecule localization;9.74377302729535e-50!GO:0015031;protein transport;9.74377302729535e-50!GO:0044267;cellular protein metabolic process;5.05917325408667e-49!GO:0044260;cellular macromolecule metabolic process;6.51678065652645e-49!GO:0005634;nucleus;7.88942998191098e-49!GO:0045184;establishment of protein localization;5.28221162953139e-47!GO:0008104;protein localization;1.38858435948374e-46!GO:0009058;biosynthetic process;3.09188661240584e-46!GO:0003735;structural constituent of ribosome;1.12452465803208e-43!GO:0006396;RNA processing;4.58416821680381e-43!GO:0044249;cellular biosynthetic process;1.10515764575376e-42!GO:0044429;mitochondrial part;2.23937412325826e-42!GO:0016043;cellular component organization and biogenesis;2.59193623759042e-42!GO:0043234;protein complex;4.04199013433447e-42!GO:0005829;cytosol;4.27769032581099e-42!GO:0009059;macromolecule biosynthetic process;6.88657158998013e-41!GO:0033279;ribosomal subunit;9.3623919244305e-38!GO:0046907;intracellular transport;1.09577691335995e-37!GO:0031981;nuclear lumen;2.82314478750158e-36!GO:0031967;organelle envelope;4.08391253739134e-36!GO:0031975;envelope;9.86727234760406e-36!GO:0043283;biopolymer metabolic process;2.21682542346838e-33!GO:0016071;mRNA metabolic process;5.79208846027988e-33!GO:0006886;intracellular protein transport;1.1581099524062e-32!GO:0010467;gene expression;5.80270953619506e-32!GO:0008380;RNA splicing;3.25211465781233e-31!GO:0065003;macromolecular complex assembly;7.0502178071355e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.55717470067016e-28!GO:0006397;mRNA processing;1.99040116336347e-28!GO:0043228;non-membrane-bound organelle;4.64710431739205e-28!GO:0043232;intracellular non-membrane-bound organelle;4.64710431739205e-28!GO:0005740;mitochondrial envelope;3.63566943129197e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.66978416583646e-27!GO:0022607;cellular component assembly;2.10553259539875e-26!GO:0031966;mitochondrial membrane;3.55727475266659e-25!GO:0012505;endomembrane system;1.48747000280896e-24!GO:0051649;establishment of cellular localization;1.48747000280896e-24!GO:0051641;cellular localization;1.60375098308382e-24!GO:0006996;organelle organization and biogenesis;7.70302209683454e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.5293007249697e-23!GO:0019866;organelle inner membrane;2.90264739654172e-23!GO:0044445;cytosolic part;7.60437640868338e-23!GO:0005681;spliceosome;1.91000899378629e-22!GO:0005743;mitochondrial inner membrane;4.56114533147722e-22!GO:0005783;endoplasmic reticulum;7.09097332772318e-22!GO:0006457;protein folding;7.56794840989978e-22!GO:0005654;nucleoplasm;1.88461394959494e-21!GO:0006119;oxidative phosphorylation;9.05482462204659e-21!GO:0016874;ligase activity;1.01986123163046e-19!GO:0005794;Golgi apparatus;1.75937454010101e-19!GO:0015935;small ribosomal subunit;2.0363663726987e-19!GO:0015934;large ribosomal subunit;3.07873374574148e-19!GO:0048770;pigment granule;4.46054941301796e-19!GO:0042470;melanosome;4.46054941301796e-19!GO:0044455;mitochondrial membrane part;4.61894689958274e-19!GO:0044432;endoplasmic reticulum part;1.63546679864925e-18!GO:0031980;mitochondrial lumen;3.34186832280593e-18!GO:0005759;mitochondrial matrix;3.34186832280593e-18!GO:0006512;ubiquitin cycle;4.51774322990194e-18!GO:0043285;biopolymer catabolic process;6.5727173126675e-18!GO:0022618;protein-RNA complex assembly;1.99678841170424e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.30833843280224e-17!GO:0044451;nucleoplasm part;2.99933355315982e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.67243578215864e-17!GO:0005730;nucleolus;3.70054141044067e-17!GO:0016462;pyrophosphatase activity;3.93981621640082e-17!GO:0019941;modification-dependent protein catabolic process;4.39474375718976e-17!GO:0043632;modification-dependent macromolecule catabolic process;4.39474375718976e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.66808841298544e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.72041659608669e-17!GO:0044257;cellular protein catabolic process;6.07904051041698e-17!GO:0044265;cellular macromolecule catabolic process;6.6205918030256e-17!GO:0006605;protein targeting;7.78626657763697e-17!GO:0030163;protein catabolic process;1.03378898414072e-16!GO:0009057;macromolecule catabolic process;1.82550550435198e-16!GO:0000166;nucleotide binding;2.88668772062103e-16!GO:0017111;nucleoside-triphosphatase activity;3.1973320912953e-16!GO:0051186;cofactor metabolic process;5.41055089144446e-16!GO:0012501;programmed cell death;1.30121521712148e-15!GO:0006915;apoptosis;2.57324383986714e-15!GO:0005761;mitochondrial ribosome;4.6295053900637e-15!GO:0000313;organellar ribosome;4.6295053900637e-15!GO:0048193;Golgi vesicle transport;7.18960900082493e-15!GO:0051082;unfolded protein binding;1.1963842515331e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.46497273913595e-14!GO:0008135;translation factor activity, nucleic acid binding;1.49929972210761e-14!GO:0043412;biopolymer modification;2.62563748511831e-14!GO:0044248;cellular catabolic process;2.91392141008729e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.83168304599564e-14!GO:0008134;transcription factor binding;4.27235112520795e-14!GO:0005746;mitochondrial respiratory chain;4.83692387313487e-14!GO:0016192;vesicle-mediated transport;6.32322349404275e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.34923476747046e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.68748917181327e-14!GO:0006732;coenzyme metabolic process;8.84598010483529e-14!GO:0008219;cell death;9.05145232694853e-14!GO:0016265;death;9.05145232694853e-14!GO:0005789;endoplasmic reticulum membrane;1.09888200870448e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26353951943745e-13!GO:0006464;protein modification process;2.86862166843476e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.87285502998139e-13!GO:0003954;NADH dehydrogenase activity;2.87285502998139e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.87285502998139e-13!GO:0006259;DNA metabolic process;2.14417250282464e-12!GO:0042254;ribosome biogenesis and assembly;4.05185708195289e-12!GO:0016070;RNA metabolic process;6.00954726396145e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.06805510540207e-11!GO:0042773;ATP synthesis coupled electron transport;1.06805510540207e-11!GO:0003743;translation initiation factor activity;1.10142230118375e-11!GO:0006413;translational initiation;1.16166095402186e-11!GO:0009055;electron carrier activity;1.17522402157961e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.40567315548142e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.57206544715964e-11!GO:0045271;respiratory chain complex I;1.57206544715964e-11!GO:0005747;mitochondrial respiratory chain complex I;1.57206544715964e-11!GO:0003676;nucleic acid binding;1.86822882811762e-11!GO:0032553;ribonucleotide binding;2.00483428269071e-11!GO:0032555;purine ribonucleotide binding;2.00483428269071e-11!GO:0017076;purine nucleotide binding;2.30657727972789e-11!GO:0006461;protein complex assembly;2.84112343108897e-11!GO:0008565;protein transporter activity;3.31967701663763e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.884310403465e-11!GO:0043687;post-translational protein modification;5.57000974877321e-11!GO:0006446;regulation of translational initiation;6.1167027748155e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.78011053991488e-11!GO:0043067;regulation of programmed cell death;9.99659231404132e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.05553045636297e-10!GO:0000375;RNA splicing, via transesterification reactions;1.05553045636297e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.05553045636297e-10!GO:0042981;regulation of apoptosis;1.0627303531275e-10!GO:0008639;small protein conjugating enzyme activity;3.95749809089716e-10!GO:0006913;nucleocytoplasmic transport;4.05124824143118e-10!GO:0019787;small conjugating protein ligase activity;4.28706006835392e-10!GO:0009056;catabolic process;5.16267140597846e-10!GO:0005793;ER-Golgi intermediate compartment;5.45702025699536e-10!GO:0009259;ribonucleotide metabolic process;6.62369072865818e-10!GO:0004842;ubiquitin-protein ligase activity;6.93727115397231e-10!GO:0005635;nuclear envelope;6.95639300115786e-10!GO:0051246;regulation of protein metabolic process;7.63999067361362e-10!GO:0051169;nuclear transport;9.05776291925547e-10!GO:0006163;purine nucleotide metabolic process;9.19237349744914e-10!GO:0007005;mitochondrion organization and biogenesis;1.19364991274488e-09!GO:0005768;endosome;1.33413881384473e-09!GO:0007049;cell cycle;1.34320420931557e-09!GO:0044431;Golgi apparatus part;1.7029479257219e-09!GO:0048475;coated membrane;2.0292121622434e-09!GO:0030117;membrane coat;2.0292121622434e-09!GO:0009150;purine ribonucleotide metabolic process;2.36892299994637e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.4114101449994e-09!GO:0016604;nuclear body;2.61192269112245e-09!GO:0009141;nucleoside triphosphate metabolic process;3.06465411709025e-09!GO:0051188;cofactor biosynthetic process;3.4179540428569e-09!GO:0006399;tRNA metabolic process;4.16768806771991e-09!GO:0006164;purine nucleotide biosynthetic process;4.19773930590847e-09!GO:0030120;vesicle coat;4.28072507261454e-09!GO:0030662;coated vesicle membrane;4.28072507261454e-09!GO:0016881;acid-amino acid ligase activity;4.35973749570179e-09!GO:0003924;GTPase activity;4.35973749570179e-09!GO:0031965;nuclear membrane;4.86142959904583e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.39897977740393e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.84319276718678e-09!GO:0009260;ribonucleotide biosynthetic process;7.82208302673301e-09!GO:0009142;nucleoside triphosphate biosynthetic process;8.37551422109816e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.37551422109816e-09!GO:0048523;negative regulation of cellular process;8.53363359712329e-09!GO:0003712;transcription cofactor activity;8.9124358475961e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.04111636029531e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.2528459735495e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.2528459735495e-08!GO:0017038;protein import;1.48605078677316e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.56670907865632e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.56670907865632e-08!GO:0016607;nuclear speck;2.38890197686741e-08!GO:0015986;ATP synthesis coupled proton transport;2.46878350388461e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.46878350388461e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.74726534032837e-08!GO:0044453;nuclear membrane part;3.73731888227821e-08!GO:0006974;response to DNA damage stimulus;4.08812990774886e-08!GO:0009108;coenzyme biosynthetic process;4.87385143693443e-08!GO:0005524;ATP binding;5.60771656695474e-08!GO:0043069;negative regulation of programmed cell death;5.91710131540772e-08!GO:0032559;adenyl ribonucleotide binding;8.16316956858097e-08!GO:0000139;Golgi membrane;8.48896267065003e-08!GO:0030554;adenyl nucleotide binding;1.12407916416362e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.38900402636464e-07!GO:0019829;cation-transporting ATPase activity;1.46259389042304e-07!GO:0043066;negative regulation of apoptosis;1.47754467548544e-07!GO:0065002;intracellular protein transport across a membrane;1.53616039703792e-07!GO:0031988;membrane-bound vesicle;1.55405853101841e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.55407638614336e-07!GO:0048519;negative regulation of biological process;1.75891832582636e-07!GO:0006364;rRNA processing;2.07133895394047e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.21562175254122e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.21562175254122e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.21562175254122e-07!GO:0016072;rRNA metabolic process;2.32157627743007e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.36998348990486e-07!GO:0046034;ATP metabolic process;3.40890656002329e-07!GO:0006366;transcription from RNA polymerase II promoter;3.6426626890493e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.64523791226081e-07!GO:0006754;ATP biosynthetic process;3.7640963213172e-07!GO:0006753;nucleoside phosphate metabolic process;3.7640963213172e-07!GO:0043038;amino acid activation;3.83403675323274e-07!GO:0006418;tRNA aminoacylation for protein translation;3.83403675323274e-07!GO:0043039;tRNA aminoacylation;3.83403675323274e-07!GO:0006752;group transfer coenzyme metabolic process;3.88513542787072e-07!GO:0005643;nuclear pore;4.49205054018678e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.55724659980286e-07!GO:0006916;anti-apoptosis;4.9577668031633e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.97054162981061e-07!GO:0005525;GTP binding;4.99878091525657e-07!GO:0000074;regulation of progression through cell cycle;5.23701161102935e-07!GO:0051726;regulation of cell cycle;6.68803430400775e-07!GO:0032446;protein modification by small protein conjugation;7.34108168890636e-07!GO:0016491;oxidoreductase activity;7.34108168890636e-07!GO:0005773;vacuole;7.71057737103288e-07!GO:0016887;ATPase activity;1.02267501800848e-06!GO:0016567;protein ubiquitination;1.05558116683643e-06!GO:0009060;aerobic respiration;1.22263468426618e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.28473575699582e-06!GO:0031982;vesicle;1.30990492330161e-06!GO:0042623;ATPase activity, coupled;1.87828215897183e-06!GO:0031410;cytoplasmic vesicle;2.02723408145096e-06!GO:0050657;nucleic acid transport;2.14071841252416e-06!GO:0051236;establishment of RNA localization;2.14071841252416e-06!GO:0050658;RNA transport;2.14071841252416e-06!GO:0022402;cell cycle process;2.20155957676256e-06!GO:0005770;late endosome;2.44913427576435e-06!GO:0006403;RNA localization;2.53790408777301e-06!GO:0045333;cellular respiration;2.55221433140673e-06!GO:0009117;nucleotide metabolic process;3.05876066843649e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.25969467977391e-06!GO:0006281;DNA repair;3.38689748388727e-06!GO:0005788;endoplasmic reticulum lumen;3.38689748388727e-06!GO:0050794;regulation of cellular process;3.53099141477989e-06!GO:0005798;Golgi-associated vesicle;3.66061000305366e-06!GO:0031252;leading edge;4.34849578185148e-06!GO:0004386;helicase activity;4.77979670448658e-06!GO:0045454;cell redox homeostasis;5.04724016515226e-06!GO:0006613;cotranslational protein targeting to membrane;5.05160258277611e-06!GO:0016740;transferase activity;5.10110918455707e-06!GO:0051170;nuclear import;5.27548945923518e-06!GO:0044440;endosomal part;5.32258196553716e-06!GO:0010008;endosome membrane;5.32258196553716e-06!GO:0000323;lytic vacuole;6.34216340003363e-06!GO:0005764;lysosome;6.34216340003363e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.76778859348297e-06!GO:0008026;ATP-dependent helicase activity;7.77685295591907e-06!GO:0016787;hydrolase activity;8.39734800983745e-06!GO:0032561;guanyl ribonucleotide binding;9.16658746865473e-06!GO:0019001;guanyl nucleotide binding;9.16658746865473e-06!GO:0045259;proton-transporting ATP synthase complex;9.37462230343568e-06!GO:0016853;isomerase activity;1.05353216894721e-05!GO:0009719;response to endogenous stimulus;1.09160371576017e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.10590546874545e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.19196075490079e-05!GO:0046930;pore complex;1.19653412736439e-05!GO:0006606;protein import into nucleus;1.2199443959852e-05!GO:0051187;cofactor catabolic process;1.43510673821177e-05!GO:0016859;cis-trans isomerase activity;1.64008394994113e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.67085983656946e-05!GO:0006099;tricarboxylic acid cycle;1.72429457069275e-05!GO:0046356;acetyl-CoA catabolic process;1.72429457069275e-05!GO:0008654;phospholipid biosynthetic process;1.75927603089316e-05!GO:0043623;cellular protein complex assembly;1.79018364550572e-05!GO:0009109;coenzyme catabolic process;2.30731153939941e-05!GO:0006323;DNA packaging;2.78671299272238e-05!GO:0048522;positive regulation of cellular process;3.53877642018264e-05!GO:0006084;acetyl-CoA metabolic process;3.96526942935419e-05!GO:0003724;RNA helicase activity;4.01126508120801e-05!GO:0004298;threonine endopeptidase activity;4.13076187223244e-05!GO:0005762;mitochondrial large ribosomal subunit;4.20066004962893e-05!GO:0000315;organellar large ribosomal subunit;4.20066004962893e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.31372885453617e-05!GO:0030118;clathrin coat;4.79654161429243e-05!GO:0009967;positive regulation of signal transduction;5.24508341348449e-05!GO:0006839;mitochondrial transport;5.46602730586284e-05!GO:0043021;ribonucleoprotein binding;5.56334422915401e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.56334422915401e-05!GO:0045786;negative regulation of progression through cell cycle;5.61929910329968e-05!GO:0051028;mRNA transport;5.69509466443295e-05!GO:0000245;spliceosome assembly;5.73952960103617e-05!GO:0000278;mitotic cell cycle;5.89183077586905e-05!GO:0030867;rough endoplasmic reticulum membrane;5.94836969199539e-05!GO:0006793;phosphorus metabolic process;5.98815498887507e-05!GO:0006796;phosphate metabolic process;5.98815498887507e-05!GO:0006612;protein targeting to membrane;6.87945615304598e-05!GO:0000314;organellar small ribosomal subunit;7.14293123451674e-05!GO:0005763;mitochondrial small ribosomal subunit;7.14293123451674e-05!GO:0003714;transcription corepressor activity;8.07776804073113e-05!GO:0005905;coated pit;8.14071673205029e-05!GO:0005769;early endosome;8.45391953832925e-05!GO:0051276;chromosome organization and biogenesis;8.62301553105413e-05!GO:0016779;nucleotidyltransferase activity;8.69752749801169e-05!GO:0005667;transcription factor complex;8.97363052456971e-05!GO:0051427;hormone receptor binding;0.000102111984019299!GO:0043566;structure-specific DNA binding;0.000120206343405524!GO:0048471;perinuclear region of cytoplasm;0.000120206343405524!GO:0031968;organelle outer membrane;0.000126075066271183!GO:0007243;protein kinase cascade;0.000130169683545614!GO:0000151;ubiquitin ligase complex;0.000135657833408299!GO:0065004;protein-DNA complex assembly;0.000138305903049176!GO:0019867;outer membrane;0.000153370081272747!GO:0005741;mitochondrial outer membrane;0.000161836006044287!GO:0042802;identical protein binding;0.000174966102059284!GO:0003697;single-stranded DNA binding;0.000181324835136959!GO:0006091;generation of precursor metabolites and energy;0.000187457267465732!GO:0035257;nuclear hormone receptor binding;0.000193683131044526!GO:0030036;actin cytoskeleton organization and biogenesis;0.000205458891827291!GO:0033116;ER-Golgi intermediate compartment membrane;0.000219523629011332!GO:0006626;protein targeting to mitochondrion;0.000231372625761188!GO:0043065;positive regulation of apoptosis;0.000250377348649018!GO:0051789;response to protein stimulus;0.000275520137148314!GO:0006986;response to unfolded protein;0.000275520137148314!GO:0003713;transcription coactivator activity;0.000276705233710267!GO:0007264;small GTPase mediated signal transduction;0.0002787518063142!GO:0005048;signal sequence binding;0.00030508121838001!GO:0016044;membrane organization and biogenesis;0.000317447829281176!GO:0008092;cytoskeletal protein binding;0.000329706289104619!GO:0016564;transcription repressor activity;0.000329706289104619!GO:0005885;Arp2/3 protein complex;0.000329706289104619!GO:0043068;positive regulation of programmed cell death;0.000348902103155868!GO:0004576;oligosaccharyl transferase activity;0.000357401364462208!GO:0008250;oligosaccharyl transferase complex;0.00038350046106347!GO:0030658;transport vesicle membrane;0.000419391186399972!GO:0001726;ruffle;0.000444575328043353!GO:0030119;AP-type membrane coat adaptor complex;0.000464327553491527!GO:0007006;mitochondrial membrane organization and biogenesis;0.000472824227680106!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000482217477200503!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000482687981220861!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000494514867252825!GO:0006979;response to oxidative stress;0.000502320133611905!GO:0065009;regulation of a molecular function;0.000522570594575521!GO:0031324;negative regulation of cellular metabolic process;0.000546288763292253!GO:0016310;phosphorylation;0.000589481568690462!GO:0003899;DNA-directed RNA polymerase activity;0.000684950927007188!GO:0050789;regulation of biological process;0.000731480373937725!GO:0006891;intra-Golgi vesicle-mediated transport;0.000764960355736053!GO:0030663;COPI coated vesicle membrane;0.000771355235279621!GO:0030126;COPI vesicle coat;0.000771355235279621!GO:0030131;clathrin adaptor complex;0.000798000880238249!GO:0031072;heat shock protein binding;0.000849428822666019!GO:0005791;rough endoplasmic reticulum;0.000883017165377103!GO:0030132;clathrin coat of coated pit;0.000895070737163471!GO:0030133;transport vesicle;0.000921728058687742!GO:0008632;apoptotic program;0.000923344726406812!GO:0043681;protein import into mitochondrion;0.00093426709270252!GO:0051920;peroxiredoxin activity;0.000936082902329932!GO:0016568;chromatin modification;0.000938328103456343!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000951682570151281!GO:0018196;peptidyl-asparagine modification;0.000954920461278802!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000954920461278802!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000992355190738546!GO:0046489;phosphoinositide biosynthetic process;0.00100149524020212!GO:0051168;nuclear export;0.0010322692324797!GO:0016197;endosome transport;0.00105609962914259!GO:0030660;Golgi-associated vesicle membrane;0.00105855270600345!GO:0030029;actin filament-based process;0.00106724689845515!GO:0048468;cell development;0.00111043830824651!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00111395935418406!GO:0009165;nucleotide biosynthetic process;0.00112099839628118!GO:0006333;chromatin assembly or disassembly;0.00112601513412063!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00115757075565475!GO:0048500;signal recognition particle;0.00116500823329183!GO:0008186;RNA-dependent ATPase activity;0.00121411200951787!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00124440296322317!GO:0046474;glycerophospholipid biosynthetic process;0.00126307654823518!GO:0030176;integral to endoplasmic reticulum membrane;0.0013201500727131!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00136615901195679!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00140701160933322!GO:0009892;negative regulation of metabolic process;0.001469968517613!GO:0019899;enzyme binding;0.00148252063310353!GO:0030659;cytoplasmic vesicle membrane;0.00149305359806007!GO:0005813;centrosome;0.00166738213700979!GO:0048518;positive regulation of biological process;0.00172997497467026!GO:0016563;transcription activator activity;0.00173968018110423!GO:0006417;regulation of translation;0.00177419412639674!GO:0015630;microtubule cytoskeleton;0.00178038069789656!GO:0019843;rRNA binding;0.00178713586473492!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00179757774487961!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00179757774487961!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00179757774487961!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00184048401720889!GO:0030125;clathrin vesicle coat;0.00186692770897861!GO:0030665;clathrin coated vesicle membrane;0.00186692770897861!GO:0051098;regulation of binding;0.00193444766478121!GO:0051252;regulation of RNA metabolic process;0.00200386846305723!GO:0030137;COPI-coated vesicle;0.00206880843238972!GO:0030880;RNA polymerase complex;0.00217270233422855!GO:0016281;eukaryotic translation initiation factor 4F complex;0.002245741567353!GO:0000049;tRNA binding;0.0023386793384818!GO:0000785;chromatin;0.00278254759025469!GO:0006414;translational elongation;0.00279677286638045!GO:0006383;transcription from RNA polymerase III promoter;0.00283282166616681!GO:0006402;mRNA catabolic process;0.00283942533553027!GO:0008033;tRNA processing;0.00290747203764506!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00295335961998808!GO:0015980;energy derivation by oxidation of organic compounds;0.00296835190590565!GO:0046483;heterocycle metabolic process;0.00304291915978895!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00304291915978895!GO:0045047;protein targeting to ER;0.00304291915978895!GO:0006917;induction of apoptosis;0.00307067743183802!GO:0004004;ATP-dependent RNA helicase activity;0.003167835504058!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00351048815073641!GO:0003729;mRNA binding;0.0035398887280448!GO:0008610;lipid biosynthetic process;0.00356675587694203!GO:0045045;secretory pathway;0.00370723608149646!GO:0051128;regulation of cellular component organization and biogenesis;0.00375748031176647!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00379525751842729!GO:0015399;primary active transmembrane transporter activity;0.00379525751842729!GO:0044433;cytoplasmic vesicle part;0.00381638707433591!GO:0030031;cell projection biogenesis;0.00386728746411762!GO:0050662;coenzyme binding;0.00425199302513886!GO:0051101;regulation of DNA binding;0.00429971030041856!GO:0012502;induction of programmed cell death;0.00430334336129345!GO:0006650;glycerophospholipid metabolic process;0.00434036070099426!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00437091274301339!GO:0000428;DNA-directed RNA polymerase complex;0.00437091274301339!GO:0030384;phosphoinositide metabolic process;0.00445526460216166!GO:0046467;membrane lipid biosynthetic process;0.00445526460216166!GO:0005815;microtubule organizing center;0.00446426258288013!GO:0008139;nuclear localization sequence binding;0.00449166410906811!GO:0006260;DNA replication;0.00449166410906811!GO:0007050;cell cycle arrest;0.00449812417135326!GO:0016363;nuclear matrix;0.00477223098119507!GO:0003690;double-stranded DNA binding;0.00478325055592177!GO:0043488;regulation of mRNA stability;0.00481274593992748!GO:0043487;regulation of RNA stability;0.00481274593992748!GO:0030521;androgen receptor signaling pathway;0.00495060651777235!GO:0008312;7S RNA binding;0.00496821082819452!GO:0035258;steroid hormone receptor binding;0.00536256334854155!GO:0030833;regulation of actin filament polymerization;0.00542007326187568!GO:0008637;apoptotic mitochondrial changes;0.00543607138030294!GO:0048144;fibroblast proliferation;0.00546996538774086!GO:0048145;regulation of fibroblast proliferation;0.00546996538774086!GO:0030134;ER to Golgi transport vesicle;0.00548052898597511!GO:0015992;proton transport;0.0055706613975701!GO:0051087;chaperone binding;0.00563472175500094!GO:0007010;cytoskeleton organization and biogenesis;0.00599784608855137!GO:0000059;protein import into nucleus, docking;0.00611911429337582!GO:0016272;prefoldin complex;0.00626801515171486!GO:0000087;M phase of mitotic cell cycle;0.00635881496622515!GO:0005694;chromosome;0.00658675781054567!GO:0030503;regulation of cell redox homeostasis;0.00663485066116721!GO:0006818;hydrogen transport;0.00665688360970357!GO:0048146;positive regulation of fibroblast proliferation;0.00667065393295884!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00673262972270681!GO:0003711;transcription elongation regulator activity;0.0067627780771291!GO:0016126;sterol biosynthetic process;0.00700763599318094!GO:0005684;U2-dependent spliceosome;0.00708512964254196!GO:0006082;organic acid metabolic process;0.00710390251190867!GO:0019752;carboxylic acid metabolic process;0.00711639274466268!GO:0012506;vesicle membrane;0.00714258051630236!GO:0016251;general RNA polymerase II transcription factor activity;0.00719767405207322!GO:0044452;nucleolar part;0.00779347652134642!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00790121493687007!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00809065865944442!GO:0008361;regulation of cell size;0.00820778367783456!GO:0045893;positive regulation of transcription, DNA-dependent;0.00834475072692028!GO:0006497;protein amino acid lipidation;0.00840494271960874!GO:0007067;mitosis;0.00850432865810169!GO:0031326;regulation of cellular biosynthetic process;0.00852584765051946!GO:0017166;vinculin binding;0.00852584765051946!GO:0009889;regulation of biosynthetic process;0.00855449244394569!GO:0006950;response to stress;0.00861589556045021!GO:0051287;NAD binding;0.00878615068556357!GO:0006334;nucleosome assembly;0.00885446604751592!GO:0030127;COPII vesicle coat;0.00889706022527537!GO:0012507;ER to Golgi transport vesicle membrane;0.00889706022527537!GO:0043022;ribosome binding;0.00908553910888288!GO:0006506;GPI anchor biosynthetic process;0.00921762603804644!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00923920300675846!GO:0032984;macromolecular complex disassembly;0.0097241104722054!GO:0016481;negative regulation of transcription;0.00983162145419497!GO:0030027;lamellipodium;0.00997937720323149!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0102053188148171!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.010249027255641!GO:0006401;RNA catabolic process;0.0103255587316943!GO:0008243;plasminogen activator activity;0.0103263915598395!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0103655036102398!GO:0008234;cysteine-type peptidase activity;0.0104247996799997!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.010656546601989!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.010656546601989!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0107136336061248!GO:0006749;glutathione metabolic process;0.0107904098886847!GO:0032940;secretion by cell;0.0109518336213285!GO:0015631;tubulin binding;0.0110292071880197!GO:0005869;dynactin complex;0.0113333475195824!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0115721789641356!GO:0048487;beta-tubulin binding;0.0115943231898349!GO:0006505;GPI anchor metabolic process;0.0117069933478179!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0117784490256144!GO:0042158;lipoprotein biosynthetic process;0.0121621445989727!GO:0006509;membrane protein ectodomain proteolysis;0.0124109632525423!GO:0033619;membrane protein proteolysis;0.0124109632525423!GO:0006352;transcription initiation;0.0124702255653407!GO:0031902;late endosome membrane;0.0125267658824813!GO:0030032;lamellipodium biogenesis;0.0126950188104711!GO:0016049;cell growth;0.0127156367598888!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0127914548304275!GO:0005774;vacuolar membrane;0.0129350946283505!GO:0050681;androgen receptor binding;0.0130074400750574!GO:0008652;amino acid biosynthetic process;0.0131839797738311!GO:0006984;ER-nuclear signaling pathway;0.013210851263144!GO:0000096;sulfur amino acid metabolic process;0.0135052132950181!GO:0006354;RNA elongation;0.0138888996807322!GO:0005149;interleukin-1 receptor binding;0.01413100408739!GO:0019222;regulation of metabolic process;0.0144022352442226!GO:0048037;cofactor binding;0.0146598727242006!GO:0007034;vacuolar transport;0.0151697918553396!GO:0043624;cellular protein complex disassembly;0.0152320743560957!GO:0000209;protein polyubiquitination;0.016646049530322!GO:0022406;membrane docking;0.0170801185484338!GO:0048278;vesicle docking;0.0170801185484338!GO:0006611;protein export from nucleus;0.0170801185484338!GO:0003746;translation elongation factor activity;0.0172460171737027!GO:0031497;chromatin assembly;0.0175677366450528!GO:0043241;protein complex disassembly;0.0178428549589705!GO:0045941;positive regulation of transcription;0.0178644719649118!GO:0006595;polyamine metabolic process;0.018315036519565!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0190362808086381!GO:0008601;protein phosphatase type 2A regulator activity;0.0198635493887035!GO:0044427;chromosomal part;0.0199542416871539!GO:0051540;metal cluster binding;0.0200039612187468!GO:0051536;iron-sulfur cluster binding;0.0200039612187468!GO:0032507;maintenance of cellular protein localization;0.020122463469675!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0203864776082894!GO:0008180;signalosome;0.0203864776082894!GO:0030041;actin filament polymerization;0.0204671583897758!GO:0050790;regulation of catalytic activity;0.0205895279634462!GO:0005832;chaperonin-containing T-complex;0.0209598657809282!GO:0006118;electron transport;0.0211496269266836!GO:0001558;regulation of cell growth;0.0212695749671058!GO:0001836;release of cytochrome c from mitochondria;0.0214105004959243!GO:0022411;cellular component disassembly;0.0215591256887901!GO:0030433;ER-associated protein catabolic process;0.0215885979850584!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0215885979850584!GO:0022890;inorganic cation transmembrane transporter activity;0.0217468587365602!GO:0031529;ruffle organization and biogenesis;0.0218210202763149!GO:0022403;cell cycle phase;0.0220781460641642!GO:0016791;phosphoric monoester hydrolase activity;0.0223470748023617!GO:0006892;post-Golgi vesicle-mediated transport;0.0224211432065922!GO:0030145;manganese ion binding;0.0227240864128478!GO:0005758;mitochondrial intermembrane space;0.023385323953477!GO:0051329;interphase of mitotic cell cycle;0.0234959640292886!GO:0046822;regulation of nucleocytoplasmic transport;0.0238424053429675!GO:0006904;vesicle docking during exocytosis;0.0238424053429675!GO:0031625;ubiquitin protein ligase binding;0.0243195128402256!GO:0000159;protein phosphatase type 2A complex;0.024404568538295!GO:0030518;steroid hormone receptor signaling pathway;0.0244990745423287!GO:0031901;early endosome membrane;0.0248415994822206!GO:0000339;RNA cap binding;0.0248880938501489!GO:0005856;cytoskeleton;0.0252588914407892!GO:0006289;nucleotide-excision repair;0.0261246228071173!GO:0008287;protein serine/threonine phosphatase complex;0.0267668391455171!GO:0006695;cholesterol biosynthetic process;0.0272295413504188!GO:0005862;muscle thin filament tropomyosin;0.0273778591526611!GO:0009116;nucleoside metabolic process;0.0274410169657085!GO:0008097;5S rRNA binding;0.0275544755238284!GO:0035035;histone acetyltransferase binding;0.0280520458413243!GO:0043492;ATPase activity, coupled to movement of substances;0.0280754095864054!GO:0048660;regulation of smooth muscle cell proliferation;0.0292246394359479!GO:0051301;cell division;0.0297293052302319!GO:0044437;vacuolar part;0.0300608043364777!GO:0043284;biopolymer biosynthetic process;0.0303570048502563!GO:0003756;protein disulfide isomerase activity;0.0305533338262336!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0305533338262336!GO:0003684;damaged DNA binding;0.0312617769555519!GO:0006643;membrane lipid metabolic process;0.0319517867861766!GO:0065007;biological regulation;0.0320457447326633!GO:0031970;organelle envelope lumen;0.0332031610685232!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0344538049081735!GO:0008426;protein kinase C inhibitor activity;0.0344881607181628!GO:0051336;regulation of hydrolase activity;0.0363617165037972!GO:0043433;negative regulation of transcription factor activity;0.0374016012295648!GO:0031371;ubiquitin conjugating enzyme complex;0.0375915873736454!GO:0005765;lysosomal membrane;0.0375915873736454!GO:0008629;induction of apoptosis by intracellular signals;0.0395563159728506!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0396362248429119!GO:0006520;amino acid metabolic process;0.0399617672465155!GO:0033130;acetylcholine receptor binding;0.040045516613564!GO:0051325;interphase;0.0400547470503928!GO:0004680;casein kinase activity;0.0400547470503928!GO:0008320;protein transmembrane transporter activity;0.0400547470503928!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0402083129299032!GO:0022884;macromolecule transmembrane transporter activity;0.0403616190193735!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0403616190193735!GO:0045334;clathrin-coated endocytic vesicle;0.0403616190193735!GO:0051651;maintenance of cellular localization;0.0404316480894108!GO:0007004;telomere maintenance via telomerase;0.0409292097838463!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0410026700438218!GO:0006405;RNA export from nucleus;0.0410151059449062!GO:0031418;L-ascorbic acid binding;0.0411523475783017!GO:0007040;lysosome organization and biogenesis;0.0413601819832013!GO:0005669;transcription factor TFIID complex;0.0415083641353927!GO:0030984;kininogen binding;0.0415227689711929!GO:0004213;cathepsin B activity;0.0415227689711929!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0416205553272646!GO:0051272;positive regulation of cell motility;0.0416622343466696!GO:0040017;positive regulation of locomotion;0.0416622343466696!GO:0008538;proteasome activator activity;0.0416622343466696!GO:0009112;nucleobase metabolic process;0.0416622343466696!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0422449014433098!GO:0033043;regulation of organelle organization and biogenesis;0.0422449014433098!GO:0006767;water-soluble vitamin metabolic process;0.0425239859949125!GO:0007032;endosome organization and biogenesis;0.0426291031923578!GO:0030911;TPR domain binding;0.042860017014713!GO:0006144;purine base metabolic process;0.0431864036022986!GO:0030100;regulation of endocytosis;0.0431995768894315!GO:0046519;sphingoid metabolic process;0.0435293724473826!GO:0004721;phosphoprotein phosphatase activity;0.0435826300126531!GO:0004674;protein serine/threonine kinase activity;0.0441437577670503!GO:0043281;regulation of caspase activity;0.0446521943821663!GO:0005784;translocon complex;0.0448192535223221!GO:0004722;protein serine/threonine phosphatase activity;0.0449426020544586!GO:0006740;NADPH regeneration;0.0450249254842642!GO:0006098;pentose-phosphate shunt;0.0450249254842642!GO:0016408;C-acyltransferase activity;0.0452616275122985!GO:0044255;cellular lipid metabolic process;0.0453989514857823!GO:0006518;peptide metabolic process;0.045934682776156!GO:0005637;nuclear inner membrane;0.0460051665837704!GO:0044262;cellular carbohydrate metabolic process;0.0465356201940793!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0465356201940793!GO:0015002;heme-copper terminal oxidase activity;0.0465356201940793!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0465356201940793!GO:0004129;cytochrome-c oxidase activity;0.0465356201940793!GO:0046983;protein dimerization activity;0.0465356201940793!GO:0031272;regulation of pseudopodium formation;0.0465356201940793!GO:0031269;pseudopodium formation;0.0465356201940793!GO:0031344;regulation of cell projection organization and biogenesis;0.0465356201940793!GO:0031268;pseudopodium organization and biogenesis;0.0465356201940793!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0465356201940793!GO:0031274;positive regulation of pseudopodium formation;0.0465356201940793!GO:0000287;magnesium ion binding;0.0468898437781439!GO:0051052;regulation of DNA metabolic process;0.0471830659817596!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0471830659817596!GO:0010257;NADH dehydrogenase complex assembly;0.0471830659817596!GO:0033108;mitochondrial respiratory chain complex assembly;0.0471830659817596!GO:0030140;trans-Golgi network transport vesicle;0.0475845762196026!GO:0007021;tubulin folding;0.0478931819722529!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0479062626812879!GO:0006607;NLS-bearing substrate import into nucleus;0.0480811963833853!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0482024739777743!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0482024739777743!GO:0051059;NF-kappaB binding;0.0484260955811896!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0485809841969823!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.048663823629255!GO:0012510;trans-Golgi network transport vesicle membrane;0.048663823629255!GO:0006733;oxidoreduction coenzyme metabolic process;0.0488760419627128!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0490218172903435!GO:0031301;integral to organelle membrane;0.0493310893079387!GO:0007041;lysosomal transport;0.0493310893079387!GO:0000082;G1/S transition of mitotic cell cycle;0.0493310893079387!GO:0045792;negative regulation of cell size;0.0493839866648916!GO:0007030;Golgi organization and biogenesis;0.0495479032721969!GO:0016311;dephosphorylation;0.0497652370100301!GO:0048661;positive regulation of smooth muscle cell proliferation;0.0497995154302081!GO:0004197;cysteine-type endopeptidase activity;0.0499543027683361
+|sample_id=11256
+|sample_note=
+|sample_sex=female
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=lung
+|top_motifs=TBX4,5:2.57567062192;TP53:2.26545298905;ZEB1:2.02721516287;TEF:1.98432170019;PPARG:1.94285274747;HIF1A:1.69518714745;SNAI1..3:1.60160122063;VSX1,2:1.27717533249;MYOD1:1.24804721494;NKX2-2,8:1.19346155503;ONECUT1,2:1.17518335877;HOX{A4,D4}:0.968922153354;ADNP_IRX_SIX_ZHX:0.96275527045;TEAD1:0.95378758598;NKX3-2:0.924467226586;TFCP2:0.89681759554;HAND1,2:0.851417772994;UFEwm:0.838301735272;PAX4:0.826130776781;PAX1,9:0.820681185295;T:0.815486075552;ARID5B:0.77263668612;FOXQ1:0.742454837232;ELK1,4_GABP{A,B1}:0.728844461636;NKX2-1,4:0.705151552246;HSF1,2:0.701476262146;TLX2:0.657444671195;NKX2-3_NKX2-5:0.638713638237;HLF:0.622978564914;SPZ1:0.611429482649;CRX:0.601345761447;ZNF148:0.59086170358;LMO2:0.582496962764;CEBPA,B_DDIT3:0.578137852563;IKZF1:0.56823058149;FOS_FOS{B,L1}_JUN{B,D}:0.499788444643;TBP:0.492646439258;GLI1..3:0.460888474948;FOSL2:0.457452061061;XCPE1{core}:0.44913690296;SOX17:0.448119848038;SP1:0.421165267517;bHLH_family:0.420767608522;FOXM1:0.420263187189;BACH2:0.339361994371;MTF1:0.337381863538;KLF4:0.33077484453;FOXN1:0.319190283862;FOXL1:0.316710875494;ESR1:0.297470012536;EVI1:0.253446805782;LHX3,4:0.222480992585;STAT5{A,B}:0.206599816926;PDX1:0.172652138112;PAX5:0.168855834747;TFAP2{A,C}:0.160721942302;NR6A1:0.152521611356;NKX3-1:0.147464921591;CDC5L:0.144805549179;NR5A1,2:0.140293529235;HMX1:0.139126820326;HMGA1,2:0.129158869537;NFIL3:0.12472042446;ZBTB6:0.122562197236;MAFB:0.0821821668727;PAX2:0.0806434747503;EP300:0.0759453788246;ZNF238:0.0588294499704;NFE2:0.0460920448165;RBPJ:0.0404975253404;EBF1:0.0371564349485;ATF4:0.0310203567542;MAZ:0.0297483950387;ALX4:0.0176842116075;PAX6:0.0156406053124;ELF1,2,4:0.0113508979592;POU6F1:0.00603596207525;REST:-0.00201286053028;AR:-0.0155689504753;FOXO1,3,4:-0.0204642334099;MYBL2:-0.0382584870213;ZIC1..3:-0.0509616891608;NFIX:-0.053935020148;NR1H4:-0.0546335215609;SMAD1..7,9:-0.0572210444739;TFAP4:-0.0629215665427;ZNF143:-0.0837384145903;NHLH1,2:-0.0881795502337;HNF1A:-0.105394221152;PAX8:-0.105972211353;NFKB1_REL_RELA:-0.108347422848;FOX{F1,F2,J1}:-0.115604303192;TLX1..3_NFIC{dimer}:-0.120228651563;ZBTB16:-0.128418903927;GZF1:-0.137516990536;AIRE:-0.139390980682;ZNF423:-0.140880000598;EN1,2:-0.158320681435;IRF7:-0.165564467154;POU3F1..4:-0.169405721617;GFI1B:-0.195522881323;NRF1:-0.205547469845;POU2F1..3:-0.209262857761;RXR{A,B,G}:-0.209955784575;STAT2,4,6:-0.218557898888;YY1:-0.242082785142;SOX2:-0.262878616002;HOX{A5,B5}:-0.2768712306;NANOG:-0.279297889597;STAT1,3:-0.279455739901;LEF1_TCF7_TCF7L1,2:-0.292510259779;GTF2A1,2:-0.297694385146;ATF6:-0.303774400354;FOX{I1,J2}:-0.306810135868;MED-1{core}:-0.319089767493;HOX{A6,A7,B6,B7}:-0.321857421414;RXRA_VDR{dimer}:-0.329047361535;ETS1,2:-0.337707140282;FOXP3:-0.337797557874;POU1F1:-0.341044076889;ATF5_CREB3:-0.348117905497;HIC1:-0.364657964291;SPI1:-0.365632303175;HNF4A_NR2F1,2:-0.368604999058;TOPORS:-0.378389273268;TFAP2B:-0.381812952233;HES1:-0.390395903919;GTF2I:-0.394281573078;OCT4_SOX2{dimer}:-0.408553282611;GATA6:-0.411899733946;NR3C1:-0.417390259456;NKX6-1,2:-0.419543457987;MYB:-0.42805229423;NFE2L2:-0.438475085852;MYFfamily:-0.459695886429;NFE2L1:-0.461753181336;AHR_ARNT_ARNT2:-0.463229770238;JUN:-0.481084330334;CDX1,2,4:-0.491677244109;RREB1:-0.497013386796;ZFP161:-0.500545655491;SPIB:-0.507228317312;MTE{core}:-0.523469362342;ZNF384:-0.528750222377;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.536863013253;CREB1:-0.543865496871;RFX1:-0.549620930579;ALX1:-0.594162741592;GCM1,2:-0.61427588819;PRDM1:-0.615849799574;RORA:-0.627013327378;RFX2..5_RFXANK_RFXAP:-0.627822313274;RUNX1..3:-0.628144752719;FOXA2:-0.628622129184;EGR1..3:-0.632138847641;ATF2:-0.642002502124;PITX1..3:-0.653200182958;ESRRA:-0.658971229405;POU5F1:-0.68240169846;NANOG{mouse}:-0.695276280385;PRRX1,2:-0.714833850847;DBP:-0.718166154093;SRF:-0.722862627536;HOXA9_MEIS1:-0.727158340648;MEF2{A,B,C,D}:-0.746389728806;FOX{D1,D2}:-0.784316542616;PBX1:-0.791372419047;PATZ1:-0.794489354376;TFDP1:-0.79820749074;BPTF:-0.827898904999;GFI1:-0.845638809371;CUX2:-0.852460279804;IRF1,2:-0.898252152296;E2F1..5:-0.923450633802;NFATC1..3:-0.923720824314;NFY{A,B,C}:-0.929248862475;FOXP1:-0.935611456099;DMAP1_NCOR{1,2}_SMARC:-0.962434802066;SREBF1,2:-0.974142691251;HBP1_HMGB_SSRP1_UBTF:-0.980501850108;IKZF2:-0.981986446008;MZF1:-1.02055847125;SOX{8,9,10}:-1.02270900006;TGIF1:-1.02736806599;TAL1_TCF{3,4,12}:-1.05712725252;GATA4:-1.11050415725;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.1186697119;XBP1:-1.16512637296;BREu{core}:-1.23928871479;FOXD3:-1.33312042038;PAX3,7:-1.45023696828;SOX5:-1.4980414842
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11256-116F5;search_select_hide=table117:FF:11256-116F5
 }}

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FF:11256-116F5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0