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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005720
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005720
|accession_numbers=CAGE;DRX008495;DRR009367;DRZ000792;DRZ002177;DRZ012142;DRZ013527
|accession_numbers_RNASeq=sRNA-Seq;DRX037005;DRR041371;DRZ007013
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.88!74.26!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.82!79.99!FOXF1;;chr4:81118647..81118666,+!p1@PRDM8!1.65!56.65!PRDM8;;chr10:28034739..28034756,-!p1@MKX!1.57!36.58!MKX;;chr7:27239703..27239715,-!p1@HOXA13!1.53!32.76!HOXA13;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!148.78!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!1.39!101.83!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!1.38!38.63!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.58!PRRX1;;chr7:27224842..27224872,-!p1@HOXA11!1.31!19.52!HOXA11;;chr11:46299539..46299620,+!p2@CREB3L1!1.26!28.80!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.66!PITX1;;chr7:27224795..27224840,-!p2@HOXA11!1.25!16.65!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.56!PRRX1;;chr5:92919100..92919135,+!p3@NR2F1!1.21!18.43!NR2F1;;chr8:99956662..99956684,+!p1@OSR2!1.15!20.20!OSR2;;chr9:77112244..77112262,+!p1@RORB!1.15!14.88!RORB;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.42!GATA2;;chr17:1959369..1959388,+!p2@HIC1!1.12!32.49!HIC1;;chr2:176969228..176969260,+!p1@HOXD11!1.11!12.01!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.11!11.74!FOXL2;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.60!PITX1;;chr10:63809106..63809127,+!p1@ARID5B!1.09!151.65!ARID5B;;chr13:72441315..72441454,-!p1@DACH1!1.06!21.29!DACH1;;chr2:19558373..19558392,-!p1@OSR1!1.05!28.26!OSR1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.10!PRRX2;;chr15:96874012..96874042,+!p2@NR2F2!1.04!90.09!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!1.04!10.92!NR2F1;;chr15:96874145..96874166,+!p7@NR2F2!1.03!18.84!NR2F2;;chr9:132427972..132428056,+!p1@PRRX2!1.02!12.56!PRRX2;;chr1:170633058..170633084,+!p5@PRRX1!1.02!9.42!PRRX1;;chr19:45260775..45260838,+!p5@BCL3!0.99!11.60!BCL3;;chr1:170633262..170633285,+!p3@PRRX1!0.99!9.96!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!0.99!9.55!NR2F1;;chr3:128206762..128206781,-!p2@GATA2!0.97!52.83!GATA2;;chr1:170632959..170632987,+!p4@PRRX1!0.97!9.28!PRRX1;;chr15:96869255..96869291,+!p6@NR2F2!0.96!15.01!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.95!13.92!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.88!NFIX;;chr5:92919068..92919082,+!p5@NR2F1!0.95!9.55!NR2F1;;chr3:138665760..138665772,-!p3@FOXL2!0.92!7.37!FOXL2;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.23!KDM5D;;chr17:59477233..59477263,+!p1@TBX2!0.91!22.93!TBX2;;chr15:96874927..96874938,+!p8@NR2F2!0.89!15.01!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.89!9.28!NR2F2;;chr13:72441074..72441172,-!p2@DACH1!0.89!6.69!DACH1;;chr5:321810..321877,+!p1@AHRR!0.88!21.70!AHRR;;chr10:63853436..63853442,+!p4@ARID5B!0.87!36.04!ARID5B;;chr15:42749722..42749739,-!p2@ZFP106!0.87!11.74!ZFP106;;chr15:96869165..96869183,+!p20@NR2F2!0.87!6.42!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.86!36.45!ARID5B;;chr6:34204921..34204939,+!p3@HMGA1!0.85!195.19!HMGA1;;chr3:25469724..25469773,+!p1@RARB!0.85!9.01!RARB;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.87!ZFY;;chr15:67430381..67430396,+!p21@SMAD3!0.83!5.73!SMAD3;;chr2:66662281..66662308,+!p1@MEIS1!0.82!20.75!MEIS1;;chr15:96869222..96869251,+!p18@NR2F2!0.82!6.69!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.60!SMAD3;;chr14:61116183..61116208,-!p1@SIX1!0.81!21.98!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.83!DRAP1;;chr3:25470156..25470227,+!p2@RARB!0.81!5.46!RARB;;chr10:63809090..63809097,+!p7@ARID5B!0.80!7.64!ARID5B;;chr7:28220198..28220269,-!p2@JAZF1!0.79!50.37!JAZF1;;chr3:69788576..69788648,+!p1@MITF!0.79!30.03!MITF;;chr2:176969179..176969226,+!p2@HOXD11!0.79!5.19!HOXD11;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.78!5.46!GLIS1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.26!ETV1;;chr17:1958388..1958404,+!p1@HIC1!0.76!33.58!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.76!24.16!HMGA2;;chr10:63809134..63809145,+!p6@ARID5B!0.76!11.88!ARID5B;;chr3:141150883..141150961,+!p6@ZBTB38!0.76!4.78!ZBTB38;;chr12:115121962..115121987,-!p1@TBX3!0.75!42.59!TBX3;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.64!HOXA7;;chr7:27239740..27239759,-!p2@HOXA13!0.75!4.64!HOXA13;;chr10:63661437..63661465,+!p2@ARID5B!0.74!95.69!ARID5B;;chr10:63853479..63853496,+!p21@ARID5B!0.74!4.50!ARID5B;;chr7:27192185..27192209,-!p1@HOXA3!0.74!4.50!HOXA3;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.50!PRRX1;;chr3:138665774..138665786,-!p5@FOXL2!0.74!4.50!FOXL2;;chr15:96873984..96873999,+!p3@NR2F2!0.73!35.76!NR2F2;;chr10:63809077..63809089,+!p5@ARID5B!0.73!10.10!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.15!TWIST2;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.42!NR2F2;;chr11:46299186..46299195,+!p3@CREB3L1!0.72!4.78!CREB3L1;;chr3:138665969..138665993,-!p2@FOXL2!0.72!4.23!FOXL2;;chr5:50679228..50679288,+!p1@ISL1!0.71!4.09!ISL1;;chr1:170632250..170632277,+!p7@PRRX1!0.71!4.09!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.70!101.69!AEBP1;;chr5:92918894..92918912,+!p2@NR2F1!0.70!14.61!NR2F1;;chr5:92920456..92920488,+!p9@NR2F1!0.70!4.78!NR2F1;;chr7:27205136..27205164,-!p1@HOXA9!0.70!3.96!HOXA9;;chr2:46524537..46524553,+!p1@EPAS1!0.69!440.08!EPAS1;;chr1:164528445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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg38.nobarcode.ctss.bed.gz
|id=FF:11257-116F6
|id=FF:11257-116F6
|is_a=EFO:0002091;;FF:0000183
|is_a=EFO:0002091;;FF:0000183
|is_obsolete=
|is_obsolete=
|library_id=CNhs11920
|library_id_phase_based=2:CNhs11920
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11257
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GTCCGC.11257
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11257
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GTCCGC.11257
|name=Smooth Muscle Cells - Prostate, donor1
|name=Smooth Muscle Cells - Prostate, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11920,LSID842,release011,COMPLETED
|profile_hcage=CNhs11920,LSID842,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
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Line 59: Line 82:
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|sample_cell_catalog=CC-2587
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|sample_cell_line=
Line 81: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:1.68626769188;MYBL2:1.45426480339;HSF1,2:1.36818441142;ESR1:1.3582147588;KLF4:1.2653990987;ZNF238:1.15811818011;GZF1:0.974978658488;ZNF384:0.971348359735;TEAD1:0.960800741505;ALX4:0.887324045361;SRF:0.867981698893;LHX3,4:0.854174031139;IKZF1:0.832782970661;EN1,2:0.742418876402;PATZ1:0.737581515778;FOXL1:0.712090791681;NKX2-2,8:0.682917620912;PRDM1:0.682188257748;GFI1B:0.676015723574;SPZ1:0.66241337534;UFEwm:0.656684077132;CRX:0.630386929707;EBF1:0.627494867174;T:0.623691628232;CDC5L:0.618760019941;MZF1:0.615468582898;TBX4,5:0.597883396697;MYB:0.596485213034;TEF:0.582978445423;GTF2I:0.568425340703;GATA4:0.558381657884;TLX1..3_NFIC{dimer}:0.557923517757;TFAP4:0.555379656435;GFI1:0.549874680588;NR3C1:0.507164213493;NHLH1,2:0.503427485193;NKX3-1:0.497585217246;YY1:0.494026405253;AIRE:0.489549233652;TFCP2:0.484106533373;ELK1,4_GABP{A,B1}:0.481392609834;TP53:0.469743239211;MAZ:0.459449523923;HMX1:0.440852476696;ZIC1..3:0.413686902131;SMAD1..7,9:0.412275808747;NFE2L2:0.404861963277;GTF2A1,2:0.403358978756;PAX1,9:0.375260969354;NR5A1,2:0.372215217011;ZNF148:0.367301446655;HAND1,2:0.364397736956;ATF6:0.357057519646;HMGA1,2:0.353192626874;RXR{A,B,G}:0.33398567106;NKX6-1,2:0.319574619815;GLI1..3:0.317538973219;NRF1:0.313232434442;PBX1:0.300405215698;PPARG:0.299683347062;HLF:0.293922631351;XCPE1{core}:0.290370723069;NFATC1..3:0.281301813479;SOX17:0.275007674343;FOXD3:0.274514208274;MYFfamily:0.266139096575;DBP:0.264154722147;FOX{I1,J2}:0.26184663066;E2F1..5:0.258624117863;NFIX:0.257484857967;HOX{A5,B5}:0.252384602643;XBP1:0.250009257494;TBP:0.237289296736;ZNF143:0.236703094268;POU5F1:0.235378654939;RFX1:0.225694755758;PRRX1,2:0.198067536831;MAFB:0.19763810879;SOX5:0.189044812905;PAX5:0.185344012956;RREB1:0.171125506549;MTE{core}:0.147490824353;TOPORS:0.147324253532;TFAP2{A,C}:0.134309578885;ZNF423:0.128501602195;IRF1,2:0.123041565461;NFY{A,B,C}:0.122995506422;NANOG{mouse}:0.121234157067;NR1H4:0.118913825409;ZBTB6:0.117579562251;HOX{A4,D4}:0.117123699217;HES1:0.11259694848;LEF1_TCF7_TCF7L1,2:0.107261856266;AHR_ARNT_ARNT2:0.0805496315573;MED-1{core}:0.0728382857961;HNF4A_NR2F1,2:0.0726270502001;PDX1:0.0689351638732;PAX3,7:0.0621190689563;ADNP_IRX_SIX_ZHX:0.0582713951848;SP1:0.0557496899202;NKX3-2:0.0540889320837;EVI1:0.0447257894122;TFDP1:0.034674138519;NR6A1:0.0245362394749;CEBPA,B_DDIT3:0.000314974176245;DMAP1_NCOR{1,2}_SMARC:-0.000950076378334;TFAP2B:-0.00426749493377;NFE2L1:-0.0110020269773;NFE2:-0.0377799387329;RXRA_VDR{dimer}:-0.0410698547952;SREBF1,2:-0.0474189317547;PAX6:-0.0517258351206;PAX4:-0.0603333701517;STAT1,3:-0.0649137863741;BACH2:-0.0691632720023;HNF1A:-0.0827907969728;TLX2:-0.0919568965526;RBPJ:-0.0947335340024;FOXQ1:-0.0961528995756;ZFP161:-0.108365127113;ELF1,2,4:-0.114376861274;POU3F1..4:-0.118976321155;FOXO1,3,4:-0.121169313721;FOS_FOS{B,L1}_JUN{B,D}:-0.134755152869;HIC1:-0.140423116298;IRF7:-0.142910084828;ALX1:-0.159463276866;HOXA9_MEIS1:-0.162664947811;STAT2,4,6:-0.178969723115;NKX2-3_NKX2-5:-0.189214703527;EGR1..3:-0.190148304403;HIF1A:-0.196039602025;ATF2:-0.198520382479;ARID5B:-0.199755897326;MEF2{A,B,C,D}:-0.210596544042;MTF1:-0.220069399476;bHLH_family:-0.229931842934;TGIF1:-0.24005772425;FOXP1:-0.247772586267;RFX2..5_RFXANK_RFXAP:-0.258995078308;GCM1,2:-0.259138668525;ONECUT1,2:-0.269866859154;FOX{D1,D2}:-0.299904378339;FOXM1:-0.307536410685;NFKB1_REL_RELA:-0.310956775167;PAX8:-0.327491491459;FOSL2:-0.327969210203;RUNX1..3:-0.339654244643;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.350219414689;FOXN1:-0.364099861533;REST:-0.38453601627;NFIL3:-0.384845513744;SOX2:-0.388108077061;STAT5{A,B}:-0.393697320293;ESRRA:-0.410051422852;NKX2-1,4:-0.411150204439;SPI1:-0.432433753747;BREu{core}:-0.439547563394;CDX1,2,4:-0.44059068745;BPTF:-0.448636766669;JUN:-0.462444466351;FOX{F1,F2,J1}:-0.487099169042;SPIB:-0.490820253447;SOX{8,9,10}:-0.503410146148;AR:-0.505511532124;ETS1,2:-0.505918269362;OCT4_SOX2{dimer}:-0.510841571101;CREB1:-0.512662843973;ATF5_CREB3:-0.524840708633;LMO2:-0.532856359492;SNAI1..3:-0.534323253086;EP300:-0.536542697081;GATA6:-0.53814746127;RORA:-0.555765724668;CUX2:-0.572835618207;POU1F1:-0.599271852582;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.614790718482;FOXA2:-0.650191943926;ATF4:-0.656029955705;HOX{A6,A7,B6,B7}:-0.675284863338;PAX2:-0.692313354042;MYOD1:-0.713959475939;HBP1_HMGB_SSRP1_UBTF:-0.716150917279;NANOG:-0.828774536511;ZEB1:-0.884433594195;FOXP3:-0.925131987526;VSX1,2:-0.972767150284;POU6F1:-0.98707747662;PITX1..3:-0.992015498024;ZBTB16:-1.02821624361;POU2F1..3:-1.03341494263;IKZF2:-1.33846470873
|top_motifs=TAL1_TCF{3,4,12}:1.68626769188;MYBL2:1.45426480339;HSF1,2:1.36818441142;ESR1:1.3582147588;KLF4:1.2653990987;ZNF238:1.15811818011;GZF1:0.974978658488;ZNF384:0.971348359735;TEAD1:0.960800741505;ALX4:0.887324045361;SRF:0.867981698893;LHX3,4:0.854174031139;IKZF1:0.832782970661;EN1,2:0.742418876402;PATZ1:0.737581515778;FOXL1:0.712090791681;NKX2-2,8:0.682917620912;PRDM1:0.682188257748;GFI1B:0.676015723574;SPZ1:0.66241337534;UFEwm:0.656684077132;CRX:0.630386929707;EBF1:0.627494867174;T:0.623691628232;CDC5L:0.618760019941;MZF1:0.615468582898;TBX4,5:0.597883396697;MYB:0.596485213034;TEF:0.582978445423;GTF2I:0.568425340703;GATA4:0.558381657884;TLX1..3_NFIC{dimer}:0.557923517757;TFAP4:0.555379656435;GFI1:0.549874680588;NR3C1:0.507164213493;NHLH1,2:0.503427485193;NKX3-1:0.497585217246;YY1:0.494026405253;AIRE:0.489549233652;TFCP2:0.484106533373;ELK1,4_GABP{A,B1}:0.481392609834;TP53:0.469743239211;MAZ:0.459449523923;HMX1:0.440852476696;ZIC1..3:0.413686902131;SMAD1..7,9:0.412275808747;NFE2L2:0.404861963277;GTF2A1,2:0.403358978756;PAX1,9:0.375260969354;NR5A1,2:0.372215217011;ZNF148:0.367301446655;HAND1,2:0.364397736956;ATF6:0.357057519646;HMGA1,2:0.353192626874;RXR{A,B,G}:0.33398567106;NKX6-1,2:0.319574619815;GLI1..3:0.317538973219;NRF1:0.313232434442;PBX1:0.300405215698;PPARG:0.299683347062;HLF:0.293922631351;XCPE1{core}:0.290370723069;NFATC1..3:0.281301813479;SOX17:0.275007674343;FOXD3:0.274514208274;MYFfamily:0.266139096575;DBP:0.264154722147;FOX{I1,J2}:0.26184663066;E2F1..5:0.258624117863;NFIX:0.257484857967;HOX{A5,B5}:0.252384602643;XBP1:0.250009257494;TBP:0.237289296736;ZNF143:0.236703094268;POU5F1:0.235378654939;RFX1:0.225694755758;PRRX1,2:0.198067536831;MAFB:0.19763810879;SOX5:0.189044812905;PAX5:0.185344012956;RREB1:0.171125506549;MTE{core}:0.147490824353;TOPORS:0.147324253532;TFAP2{A,C}:0.134309578885;ZNF423:0.128501602195;IRF1,2:0.123041565461;NFY{A,B,C}:0.122995506422;NANOG{mouse}:0.121234157067;NR1H4:0.118913825409;ZBTB6:0.117579562251;HOX{A4,D4}:0.117123699217;HES1:0.11259694848;LEF1_TCF7_TCF7L1,2:0.107261856266;AHR_ARNT_ARNT2:0.0805496315573;MED-1{core}:0.0728382857961;HNF4A_NR2F1,2:0.0726270502001;PDX1:0.0689351638732;PAX3,7:0.0621190689563;ADNP_IRX_SIX_ZHX:0.0582713951848;SP1:0.0557496899202;NKX3-2:0.0540889320837;EVI1:0.0447257894122;TFDP1:0.034674138519;NR6A1:0.0245362394749;CEBPA,B_DDIT3:0.000314974176245;DMAP1_NCOR{1,2}_SMARC:-0.000950076378334;TFAP2B:-0.00426749493377;NFE2L1:-0.0110020269773;NFE2:-0.0377799387329;RXRA_VDR{dimer}:-0.0410698547952;SREBF1,2:-0.0474189317547;PAX6:-0.0517258351206;PAX4:-0.0603333701517;STAT1,3:-0.0649137863741;BACH2:-0.0691632720023;HNF1A:-0.0827907969728;TLX2:-0.0919568965526;RBPJ:-0.0947335340024;FOXQ1:-0.0961528995756;ZFP161:-0.108365127113;ELF1,2,4:-0.114376861274;POU3F1..4:-0.118976321155;FOXO1,3,4:-0.121169313721;FOS_FOS{B,L1}_JUN{B,D}:-0.134755152869;HIC1:-0.140423116298;IRF7:-0.142910084828;ALX1:-0.159463276866;HOXA9_MEIS1:-0.162664947811;STAT2,4,6:-0.178969723115;NKX2-3_NKX2-5:-0.189214703527;EGR1..3:-0.190148304403;HIF1A:-0.196039602025;ATF2:-0.198520382479;ARID5B:-0.199755897326;MEF2{A,B,C,D}:-0.210596544042;MTF1:-0.220069399476;bHLH_family:-0.229931842934;TGIF1:-0.24005772425;FOXP1:-0.247772586267;RFX2..5_RFXANK_RFXAP:-0.258995078308;GCM1,2:-0.259138668525;ONECUT1,2:-0.269866859154;FOX{D1,D2}:-0.299904378339;FOXM1:-0.307536410685;NFKB1_REL_RELA:-0.310956775167;PAX8:-0.327491491459;FOSL2:-0.327969210203;RUNX1..3:-0.339654244643;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.350219414689;FOXN1:-0.364099861533;REST:-0.38453601627;NFIL3:-0.384845513744;SOX2:-0.388108077061;STAT5{A,B}:-0.393697320293;ESRRA:-0.410051422852;NKX2-1,4:-0.411150204439;SPI1:-0.432433753747;BREu{core}:-0.439547563394;CDX1,2,4:-0.44059068745;BPTF:-0.448636766669;JUN:-0.462444466351;FOX{F1,F2,J1}:-0.487099169042;SPIB:-0.490820253447;SOX{8,9,10}:-0.503410146148;AR:-0.505511532124;ETS1,2:-0.505918269362;OCT4_SOX2{dimer}:-0.510841571101;CREB1:-0.512662843973;ATF5_CREB3:-0.524840708633;LMO2:-0.532856359492;SNAI1..3:-0.534323253086;EP300:-0.536542697081;GATA6:-0.53814746127;RORA:-0.555765724668;CUX2:-0.572835618207;POU1F1:-0.599271852582;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.614790718482;FOXA2:-0.650191943926;ATF4:-0.656029955705;HOX{A6,A7,B6,B7}:-0.675284863338;PAX2:-0.692313354042;MYOD1:-0.713959475939;HBP1_HMGB_SSRP1_UBTF:-0.716150917279;NANOG:-0.828774536511;ZEB1:-0.884433594195;FOXP3:-0.925131987526;VSX1,2:-0.972767150284;POU6F1:-0.98707747662;PITX1..3:-0.992015498024;ZBTB16:-1.02821624361;POU2F1..3:-1.03341494263;IKZF2:-1.33846470873
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11257-116F6;search_select_hide=table117:FF:11257-116F6
}}
}}

Latest revision as of 16:28, 3 June 2020

Name:Smooth Muscle Cells - Prostate, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11920
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage40 years old adult
sexmale
age40
cell typesmooth muscle cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005720
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11920 CAGE DRX008495 DRR009367
Accession ID Hg19

Library idBAMCTSS
CNhs11920 DRZ000792 DRZ002177
Accession ID Hg38

Library idBAMCTSS
CNhs11920 DRZ012142 DRZ013527
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005720
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GTCCGC sRNA-Seq DRX037005 DRR041371
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GTCCGC DRZ007013


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0721
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.226
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.165
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.291
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0813
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.198
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.105
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.398
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.292
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.301
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.111
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.226
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.105
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0526
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.141
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.033
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0556
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.291
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.174
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.149
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.464
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.232
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11920

Jaspar motifP-value
MA0002.20.00104
MA0003.10.373
MA0004.10.0159
MA0006.10.516
MA0007.10.883
MA0009.10.696
MA0014.10.312
MA0017.10.314
MA0018.27.20534e-5
MA0019.10.986
MA0024.10.507
MA0025.10.0555
MA0027.10.681
MA0028.10.0777
MA0029.10.735
MA0030.10.587
MA0031.10.518
MA0035.20.437
MA0038.10.11
MA0039.20.148
MA0040.10.347
MA0041.10.879
MA0042.10.919
MA0043.10.0165
MA0046.10.803
MA0047.20.242
MA0048.10.226
MA0050.10.284
MA0051.10.518
MA0052.10.259
MA0055.10.618
MA0057.10.234
MA0058.10.00655
MA0059.10.0293
MA0060.10.581
MA0061.10.0548
MA0062.20.281
MA0065.20.13
MA0066.10.749
MA0067.10.0108
MA0068.10.0817
MA0069.10.138
MA0070.10.283
MA0071.10.952
MA0072.10.837
MA0073.10.251
MA0074.10.471
MA0076.10.133
MA0077.10.38
MA0078.10.303
MA0079.20.417
MA0080.22.77414e-9
MA0081.10.01
MA0083.10.00507
MA0084.10.0939
MA0087.10.775
MA0088.10.53
MA0090.10.00174
MA0091.10.00754
MA0092.10.871
MA0093.10.0315
MA0099.20.0106
MA0100.10.464
MA0101.10.0401
MA0102.20.399
MA0103.14.92025e-4
MA0104.24.28323e-4
MA0105.10.395
MA0106.10.507
MA0107.10.0237
MA0108.20.13
MA0111.10.244
MA0112.20.561
MA0113.10.954
MA0114.10.448
MA0115.10.199
MA0116.10.411
MA0117.10.408
MA0119.10.693
MA0122.10.25
MA0124.10.944
MA0125.10.177
MA0131.10.524
MA0135.10.812
MA0136.14.94691e-10
MA0137.20.602
MA0138.20.131
MA0139.10.517
MA0140.10.689
MA0141.10.273
MA0142.10.0113
MA0143.10.412
MA0144.10.938
MA0145.10.878
MA0146.10.207
MA0147.10.00204
MA0148.10.319
MA0149.10.27
MA0150.10.0111
MA0152.10.0366
MA0153.10.885
MA0154.10.873
MA0155.10.894
MA0156.18.92765e-5
MA0157.10.259
MA0159.10.543
MA0160.10.0977
MA0162.10.0852
MA0163.10.0788
MA0164.10.557
MA0258.10.114
MA0259.10.314



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11920

Novel motifP-value
10.243
100.828
1000.65
1010.367
1020.194
1030.673
1040.889
1050.537
1060.0469
1070.968
1080.74
1090.73
110.698
1100.42
1110.0976
1120.783
1130.189
1140.112
1150.628
1160.764
1170.827
1180.521
1190.427
120.35
1200.588
1210.983
1220.0287
1230.00781
1240.976
1250.132
1260.688
1270.943
1280.24
1290.194
130.452
1300.0537
1310.586
1320.224
1330.818
1340.182
1350.641
1360.696
1370.111
1380.172
1390.0403
140.18
1400.367
1410.226
1420.826
1430.482
1440.824
1450.272
1460.381
1470.173
1480.771
1490.223
150.0356
1500.917
1510.354
1520.432
1530.685
1540.181
1550.0521
1560.597
1570.413
1580.0498
1590.594
160.929
1600.694
1610.316
1620.689
1630.979
1640.643
1650.14
1660.135
1670.516
1680.972
1690.178
170.688
180.741
190.0322
20.248
200.431
210.378
220.308
230.757
240.601
250.327
260.272
270.641
280.222
290.881
30.739
300.225
310.85
325.77066e-6
331
340.896
350.435
360.166
370.696
380.171
390.478
40.0328
400.568
410.0401
420.479
430.314
440.581
450.938
460.605
470.437
480.429
490.113
50.292
500.417
510.952
520.5
530.29
540.923
550.768
560.667
570.365
580.237
590.638
60.355
600.127
610.954
620.405
630.693
640.445
650.535
660.531
670.728
680.821
690.754
70.167
700.0284
710.872
720.523
730.265
740.734
750.873
760.228
770.468
780.025
790.138
80.862
800.617
810.191
820.627
830.132
840.955
850.144
860.877
870.568
880.652
890.615
90.698
900.318
910.635
920.596
930.519
940.62
950.688
960.215
970.517
980.0524
990.0275



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11920


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
1000487 (smooth muscle cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000183 (human smooth muscle cell of prostate sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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