Personal tools

FF:11268-116G8: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005836
|DRA_sample_Accession=CAGE@SAMD00005836
|accession_numbers=CAGE;DRX008243;DRR009115;DRZ000540;DRZ001925
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005836
|accession_numbers=CAGE;DRX008243;DRR009115;DRZ000540;DRZ001925;DRZ011890;DRZ013275
|accession_numbers_RNASeq=sRNA-Seq;DRX037205;DRR041571;DRZ007213
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
Line 42: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor1.CNhs12498.11268-116G8.hg38.nobarcode.ctss.bed.gz
|id=FF:11268-116G8
|id=FF:11268-116G8
|is_a=EFO:0002091;;FF:0000059
|is_a=EFO:0002091;;FF:0000059
Line 47: Line 54:
|library_id=CNhs12498
|library_id=CNhs12498
|library_id_phase_based=2:CNhs12498
|library_id_phase_based=2:CNhs12498
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11268
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TGACCA.11268
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11268
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TGACCA.11268
|name=Fibroblast - Cardiac, donor1
|name=Fibroblast - Cardiac, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 54: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.03299516705659,0,0.362529138108376,0.405287514971519,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539060578942455,0,0,0.096656598571488,0,0,0.228655496721894,0,0,0.377951574727979,0,0,0,0,0,0,0,0,0,0,0,0,0.249877808595661,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0971187613767046,0,0.229621031747347,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157668923714332,0,0,0,0.0350049909071819,0.108748232455077,0,0,0,0,-0.0980353512377064,0.0248294956940808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.275145864991027,0.438860830804405,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.03299516705659,0,0.362529138108376,0.405287514971519,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539060578942455,0,0,0.096656598571488,0,0,0.228655496721894,0,0,0.377951574727979,0,0,0,0,0,0,0,0,0,0,0,0,0.249877808595661,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0971187613767046,0,0.229621031747347,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157668923714332,0,0,0,0.0350049909071819,0.108748232455077,0,0,0,0,-0.0980353512377064,0.0248294956940808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.275145864991027,0.438860830804405,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.0368219457548326,0.284948942311015,0,0,0.0770382715098945,0,0.326613392989952,0,0,0,0,0,0,0.193313197142976,0.452050765051878,0,0.276200841400637,0,0,0,0,0.060837319034889,-0.305472230898407,0,-0.0776014625780215,0.124968936065608,0,0,0,0,0.395896760462063,0,-0.120879483793741,-0.0827201683234173,0.105001804887145,0.409369674069061,-0.055712496781182,0,0,0,0.245485662221486,0.444526164225943,0,0,0.321068541465055,0.26149877465627,0,0,1.10417482115339,0,0.143645482797316,0.324469510654102,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0.253395174167295,-0.326988596678969,0,0,0,0,-0.0194646959722761,0,0,-0.179972958813591,-0.022320758689484,0,-0.184985231579725,0,-0.302389727009913,0.141241606085801,0.039490012426303,0.144417715215889,0.179211543618813,0.00333147759312874,0,0.266894004253968,-0.0470626800469367,-0.0334870140807072,0.0517366677122657,0.0329863689076098,0.23980334404027,-0.128847024512629,0,0,0,0.0548457953397659,0,-0.0318298484848079,-0.0616506296422864,0.0849921284260165,0.19401464499748,0.0340421788774845,0.0601166614018445,0.224356542328031,0.47137563605017,-0.264123255753619,0.0645419974754187,0.614614512840023,0,0,0,-0.0342550885053706,0.0340774754698728,0.204163409398516,0,0.0269307026958603,0.124968936065608,0.096656598571488,0.14604788165262,-0.00637544092660836,0.326613392989952,0,0.113606358419471,0,0,0,0,0.193313197142976,0.237083001108878,-0.0285839785233254,0.0937578314344071,0,0.0134224916252933,0,0.0934515252053855,0,-0.517331280408174,0.0287273900776974,-0.104760955218316,-0.0295958815106487,0,0.0222089332098447,0.30206994811971,0.0800993401138421,0.217496464910153,-0.0584468268118252,-0.403858540785779,-0.51506745460735,0.0350049909071819,-0.360475779955739,0.0690055005495626,0.105186364667688,0,0.0900524419419708,0.17586675860539,-0.00524823138078298,0.00745923737886151,0,0.135417983879788,0,-0.42545813248773,0,-0.140756181599796,0.241041459642704,-0.439289374580686,-0.109061059193507,0,-0.105379729024981,1.29055656506224,0,0.0542290198179715,0,0.193313197142976,0.278097001499848,0.157668923714332,-0.0183372307216131,0.0543237404637814,0,0.276352907166143,0,0,0.244173251526441,0.0911373552255632,0,0.049315916488468,0.0306883560884941,-0.175751956360807,0.312493011399553,0,0,0.301217728269711,0,0,0.249436826408884,0.0830090200658504,0.0201079463432569,-0.253326341486756,0,0.307979424268177,0,0,-0.177527765965176,0,0.0651406106981675,0,0,0.254436061820641,0,0,0,0.510908164506841,0.00134792073320033,0,0,0,0,0,0,0,-0.279165145745741,-0.161520133073472,0,0.236685502188871,0,0,0,0,0,0.0639070819266314,0,0.998731817067823,0.650235573224997,0.0059545716497855,-0.12301741567642,0.096656598571488,0,0,0,0.110889990436477,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.266367432079183,0,0,0,0.0496589913881615,0,0,0,0,-0.100408422211085,0,0,-0.0517595413819371,0,0.108671719295276,0.24503151344311,0,-0.19989903285749,0.462779886153439,0.335528445498214,0,0,0.1671169530446,0,0.096656598571488,-0.0623471291728966,-0.0619471435440757,0,-0.0209247759461169,0,0,0,0,0,0,0.214149572434732,0,0,0,0,0,0,0,0,0,0,0,-0.00263299833098496,-0.0922240566585104,0.0224585290166962,0,0,0,0,0,0,-0.0241060230789031,-0.13600460823762,0,0,0,0,0,0,0,0,0.168465330638648,0,0,0.326613392989952,0,0,0.229621031747347,0,0,0,0,0.382110945108552,0,0,0.362529138108376,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.217443845454699,0,0,0,0,0,0,0,0.545156284371105,0,0.428464084834487,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.03299516705659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559383207783581,0,0.201780025522023,0.0843260978894026,0,0,0.310792640309862,0,0,0,0,0,0,0.065316174542961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0.193313197142976,0,0,0.228655496721894,0,0,-0.0920328098005262,0,0,0,0,0.193313197142976,0,-0.0737447982394659,0.589892594261123,-0.00203722406263257,0,0,0.193313197142976,0.256503068506276,0,0,0.109617202710785,0,0.259836005571051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539060578942455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0.096656598571488,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0.113294728874338,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0.234462403351496,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.34408745260446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304860847711202,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.63989127030189,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257297556218336,0,0,0.3955694722282,0,0,0,0,0,0,0,0,0,0,0,0,0.265293213839826,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.1428768290184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263720589139978,0.438860830804405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.099269993853978,0.096656598571488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199593163827591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.0706172001459752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0.326613392989952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0.377951574727979,0,0,0,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12828029403099,0,0,-0.0422874684771159,0,0.339223979554777,0.176306503339703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0406819038524064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0.149024309232578,0.34213526054506,0,0.193313197142976,0.524346488791146,0,0,0.193313197142976,0,0,0.018320302052677,0.355342144208165,0.428464084834487,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0331909038349251,0,0.193313197142976,0,-0.0568589461625992,0.0571377573953827,0,-0.185523057207448,0,0,-0.236654352495081,0,0,0,-0.0959594073735869
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.0368219457548326,0.284948942311015,0,0,0.0770382715098945,0,0.326613392989952,0,0,0,0,0,0,0.193313197142976,0.452050765051878,0,0.276200841400637,0,0,0,0,0.060837319034889,-0.305472230898407,0,-0.0776014625780215,0.124968936065608,0,0,0,0,0.395896760462063,0,-0.120879483793741,-0.0827201683234173,0.105001804887145,0.409369674069061,-0.055712496781182,0,0,0,0.245485662221486,0.444526164225943,0,0,0.321068541465055,0.26149877465627,0,0,1.10417482115339,0,0.143645482797316,0.324469510654102,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0.253395174167295,-0.326988596678969,0,0,0,0,-0.0194646959722761,0,0,-0.179972958813591,-0.022320758689484,0,-0.184985231579725,0,-0.302389727009913,0.141241606085801,0.039490012426303,0.144417715215889,0.179211543618813,0.00333147759312874,0,0.266894004253968,-0.0470626800469367,-0.0334870140807072,0.0517366677122657,0.0329863689076098,0.23980334404027,-0.128847024512629,0,0,0,0.0548457953397659,0,-0.0318298484848079,-0.0616506296422864,0.0849921284260165,0.19401464499748,0.0340421788774845,0.0601166614018445,0.224356542328031,0.47137563605017,-0.264123255753619,0.0645419974754187,0.614614512840023,0,0,0,-0.0342550885053706,0.0340774754698728,0.204163409398516,0,0.0269307026958603,0.124968936065608,0.096656598571488,0.14604788165262,-0.00637544092660836,0.326613392989952,0,0.113606358419471,0,0,0,0,0.193313197142976,0.237083001108878,-0.0285839785233254,0.0937578314344071,0,0.0134224916252933,0,0.0934515252053855,0,-0.517331280408174,0.0287273900776974,-0.104760955218316,-0.0295958815106487,0,0.0222089332098447,0.30206994811971,0.0800993401138421,0.217496464910153,-0.0584468268118252,-0.403858540785779,-0.51506745460735,0.0350049909071819,-0.360475779955739,0.0690055005495626,0.105186364667688,0,0.0900524419419708,0.17586675860539,-0.00524823138078298,0.00745923737886151,0,0.135417983879788,0,-0.42545813248773,0,-0.140756181599796,0.241041459642704,-0.439289374580686,-0.109061059193507,0,-0.105379729024981,1.29055656506224,0,0.0542290198179715,0,0.193313197142976,0.278097001499848,0.157668923714332,-0.0183372307216131,0.0543237404637814,0,0.276352907166143,0,0,0.244173251526441,0.0911373552255632,0,0.049315916488468,0.0306883560884941,-0.175751956360807,0.312493011399553,0,0,0.301217728269711,0,0,0.249436826408884,0.0830090200658504,0.0201079463432569,-0.253326341486756,0,0.307979424268177,0,0,-0.177527765965176,0,0.0651406106981675,0,0,0.254436061820641,0,0,0,0.510908164506841,0.00134792073320033,0,0,0,0,0,0,0,-0.279165145745741,-0.161520133073472,0,0.236685502188871,0,0,0,0,0,0.0639070819266314,0,0.998731817067823,0.650235573224997,0.0059545716497855,-0.12301741567642,0.096656598571488,0,0,0,0.110889990436477,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.266367432079183,0,0,0,0.0496589913881615,0,0,0,0,-0.100408422211085,0,0,-0.0517595413819371,0,0.108671719295276,0.24503151344311,0,-0.19989903285749,0.462779886153439,0.335528445498214,0,0,0.1671169530446,0,0.096656598571488,-0.0623471291728966,-0.0619471435440757,0,-0.0209247759461169,0,0,0,0,0,0,0.214149572434732,0,0,0,0,0,0,0,0,0,0,0,-0.00263299833098496,-0.0922240566585104,0.0224585290166962,0,0,0,0,0,0,-0.0241060230789031,-0.13600460823762,0,0,0,0,0,0,0,0,0.168465330638648,0,0,0.326613392989952,0,0,0.229621031747347,0,0,0,0,0.382110945108552,0,0,0.362529138108376,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.217443845454699,0,0,0,0,0,0,0,0.545156284371105,0,0.428464084834487,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.03299516705659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559383207783581,0,0.201780025522023,0.0843260978894026,0,0,0.310792640309862,0,0,0,0,0,0,0.065316174542961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0.193313197142976,0,0,0.228655496721894,0,0,-0.0920328098005262,0,0,0,0,0.193313197142976,0,-0.0737447982394659,0.589892594261123,-0.00203722406263257,0,0,0.193313197142976,0.256503068506276,0,0,0.109617202710785,0,0.259836005571051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539060578942455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0.096656598571488,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0.113294728874338,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0.234462403351496,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.34408745260446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304860847711202,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.63989127030189,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257297556218336,0,0,0.3955694722282,0,0,0,0,0,0,0,0,0,0,0,0,0.265293213839826,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.1428768290184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263720589139978,0.438860830804405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.099269993853978,0.096656598571488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199593163827591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.0706172001459752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0.326613392989952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0.096656598571488,0,0,0,0,0,0,0,0,0,0.377951574727979,0,0,0,0,0,0,0,0,0,0,0,0.193313197142976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12828029403099,0,0,-0.0422874684771159,0,0.339223979554777,0.176306503339703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0406819038524064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0.149024309232578,0.34213526054506,0,0.193313197142976,0.524346488791146,0,0,0.193313197142976,0,0,0.018320302052677,0.355342144208165,0.428464084834487,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0331909038349251,0,0.193313197142976,0,-0.0568589461625992,0.0571377573953827,0,-0.185523057207448,0,0,-0.236654352495081,0,0,0,-0.0959594073735869
Line 69: Line 82:
|rna_tube_id=116G8
|rna_tube_id=116G8
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.TGACCA
|sample_age=embryo 22week
|sample_age=embryo 22week
|sample_category=primary cells
|sample_category=primary cells
Line 92: Line 106:
|top_motifs=HOX{A5,B5}:1.7152184001;XBP1:1.48662197063;GTF2A1,2:1.4678860414;IKZF1:1.44848067223;NR3C1:1.40738796944;TEAD1:1.35090992626;HIF1A:1.30668004245;SRF:1.28165382793;GLI1..3:1.26131497575;NFE2L1:1.1300272652;ZIC1..3:1.07901975553;TBP:1.07437420906;ALX4:1.04868768607;HMX1:1.0380284994;GFI1B:1.02753633675;UFEwm:1.02176606425;TAL1_TCF{3,4,12}:0.992190517886;LHX3,4:0.960673994543;TLX1..3_NFIC{dimer}:0.937717246642;RXRA_VDR{dimer}:0.899688263545;SMAD1..7,9:0.894378066316;TFAP4:0.84397899064;HAND1,2:0.820533599703;XCPE1{core}:0.801627343876;GCM1,2:0.78169407207;EBF1:0.780326907516;ZBTB6:0.746672365649;PAX5:0.71106438162;TBX4,5:0.707257829881;ZNF148:0.704053317259;NKX3-2:0.651904582492;FOXM1:0.613430258268;MAZ:0.613259199424;MYBL2:0.609051999156;GTF2I:0.608092082793;EN1,2:0.593466983666;ONECUT1,2:0.593004049979;TP53:0.575420395183;KLF4:0.569877710874;STAT5{A,B}:0.569140295725;SOX17:0.560100811377;TFAP2B:0.559715414604;NKX3-1:0.554375484997;PATZ1:0.552729287914;PPARG:0.533536915512;ZNF238:0.528682234476;MEF2{A,B,C,D}:0.505184252756;AR:0.484352550483;EVI1:0.464364310587;RXR{A,B,G}:0.438641481018;NR5A1,2:0.435169756742;TFCP2:0.429799040433;ESR1:0.409578796733;ADNP_IRX_SIX_ZHX:0.398055806056;TOPORS:0.396094384142;MTE{core}:0.391540550025;HIC1:0.387090726768;POU3F1..4:0.382806422787;bHLH_family:0.381967459361;NKX2-1,4:0.374123872913;HES1:0.370162142645;ZNF423:0.354297919028;GFI1:0.345677273492;NR6A1:0.331388139249;ESRRA:0.319676083461;NANOG{mouse}:0.308221537639;NFIX:0.305866275174;GATA6:0.298843928497;STAT2,4,6:0.276232784459;MAFB:0.275200363326;EGR1..3:0.26848435053;REST:0.254470196212;NFE2L2:0.254015250197;ZNF384:0.222254434367;GATA4:0.216349650598;NFATC1..3:0.214971367897;SP1:0.202512811551;SPZ1:0.188254908943;TFAP2{A,C}:0.166264623586;LEF1_TCF7_TCF7L1,2:0.152033116034;HLF:0.110214596062;HOXA9_MEIS1:0.107103696645;SOX2:0.104299485816;RREB1:0.0847933618451;BACH2:0.0561670485502;PRDM1:0.0525325661929;HSF1,2:0.0337912150219;PAX8:0.0206057895084;FOS_FOS{B,L1}_JUN{B,D}:0.0190071299158;NHLH1,2:0.00593544540036;MZF1:-0.00993744796577;LMO2:-0.020086730413;ZNF143:-0.032112652036;MYFfamily:-0.0431466105905;HMGA1,2:-0.0499386420462;MTF1:-0.0628595657875;ATF6:-0.0706715856149;HNF1A:-0.0776751492289;GZF1:-0.0801542567699;POU2F1..3:-0.0983620561554;FOXL1:-0.0985689336974;PAX6:-0.110863343526;CDC5L:-0.122346357575;TFDP1:-0.127402178928;ATF2:-0.129559251795;AIRE:-0.131151354512;VSX1,2:-0.138244992343;CRX:-0.146114343565;NANOG:-0.153663332692;HNF4A_NR2F1,2:-0.160058811711;ELK1,4_GABP{A,B1}:-0.164613948396;SOX{8,9,10}:-0.168853822033;NKX2-2,8:-0.187115290797;FOSL2:-0.190718368048;TEF:-0.199712054531;EP300:-0.20451775117;E2F1..5:-0.209705022014;PAX1,9:-0.239933656135;PAX3,7:-0.247154494458;JUN:-0.247702178774;POU5F1:-0.249051887284;AHR_ARNT_ARNT2:-0.255189656529;POU1F1:-0.267285614848;HOX{A4,D4}:-0.267346799762;CEBPA,B_DDIT3:-0.274700880997;ARID5B:-0.280889594647;SNAI1..3:-0.290507460547;MYOD1:-0.299321578615;NFY{A,B,C}:-0.302416648971;PAX2:-0.32054151921;MYB:-0.333061800453;NRF1:-0.335376991057;PBX1:-0.358560879039;RUNX1..3:-0.377299250246;RFX1:-0.37980207342;NFE2:-0.383244007206;NFKB1_REL_RELA:-0.389929198332;ZFP161:-0.408541150193;YY1:-0.418719785017;SOX5:-0.422075451201;PRRX1,2:-0.429404992978;NKX6-1,2:-0.464470667891;SREBF1,2:-0.472907661767;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479506070391;NFIL3:-0.489482768935;MED-1{core}:-0.507336459245;ALX1:-0.512252809208;PDX1:-0.524288128392;ZEB1:-0.529479540509;FOXA2:-0.540106776097;ELF1,2,4:-0.546224295096;TGIF1:-0.550961820815;ETS1,2:-0.55564749741;IRF1,2:-0.564675255004;NR1H4:-0.609079599559;CUX2:-0.61291424777;TLX2:-0.617329554968;NKX2-3_NKX2-5:-0.625752378756;HBP1_HMGB_SSRP1_UBTF:-0.653942843861;SPIB:-0.656254693953;ATF4:-0.656520947208;OCT4_SOX2{dimer}:-0.658745164708;BPTF:-0.675630537039;RORA:-0.682007791759;SPI1:-0.695436917266;DBP:-0.720512794444;CDX1,2,4:-0.731512869526;ATF5_CREB3:-0.735960261604;FOX{D1,D2}:-0.768454383396;BREu{core}:-0.77439329525;FOX{F1,F2,J1}:-0.821648156933;POU6F1:-0.826489139515;IRF7:-0.855928003798;FOXQ1:-0.876556869786;FOXP3:-0.903804096167;FOXO1,3,4:-0.943340089679;FOX{I1,J2}:-0.979298326931;IKZF2:-0.986188668853;CREB1:-1.01659363897;HOX{A6,A7,B6,B7}:-1.06916758417;STAT1,3:-1.07174538847;DMAP1_NCOR{1,2}_SMARC:-1.16169862589;FOXP1:-1.19157882274;T:-1.22563209356;PAX4:-1.24731738362;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29517131638;RBPJ:-1.3734445448;PITX1..3:-1.3915867758;ZBTB16:-1.42728170112;FOXN1:-1.47042411851;RFX2..5_RFXANK_RFXAP:-1.59530913331;FOXD3:-1.69593013024
|top_motifs=HOX{A5,B5}:1.7152184001;XBP1:1.48662197063;GTF2A1,2:1.4678860414;IKZF1:1.44848067223;NR3C1:1.40738796944;TEAD1:1.35090992626;HIF1A:1.30668004245;SRF:1.28165382793;GLI1..3:1.26131497575;NFE2L1:1.1300272652;ZIC1..3:1.07901975553;TBP:1.07437420906;ALX4:1.04868768607;HMX1:1.0380284994;GFI1B:1.02753633675;UFEwm:1.02176606425;TAL1_TCF{3,4,12}:0.992190517886;LHX3,4:0.960673994543;TLX1..3_NFIC{dimer}:0.937717246642;RXRA_VDR{dimer}:0.899688263545;SMAD1..7,9:0.894378066316;TFAP4:0.84397899064;HAND1,2:0.820533599703;XCPE1{core}:0.801627343876;GCM1,2:0.78169407207;EBF1:0.780326907516;ZBTB6:0.746672365649;PAX5:0.71106438162;TBX4,5:0.707257829881;ZNF148:0.704053317259;NKX3-2:0.651904582492;FOXM1:0.613430258268;MAZ:0.613259199424;MYBL2:0.609051999156;GTF2I:0.608092082793;EN1,2:0.593466983666;ONECUT1,2:0.593004049979;TP53:0.575420395183;KLF4:0.569877710874;STAT5{A,B}:0.569140295725;SOX17:0.560100811377;TFAP2B:0.559715414604;NKX3-1:0.554375484997;PATZ1:0.552729287914;PPARG:0.533536915512;ZNF238:0.528682234476;MEF2{A,B,C,D}:0.505184252756;AR:0.484352550483;EVI1:0.464364310587;RXR{A,B,G}:0.438641481018;NR5A1,2:0.435169756742;TFCP2:0.429799040433;ESR1:0.409578796733;ADNP_IRX_SIX_ZHX:0.398055806056;TOPORS:0.396094384142;MTE{core}:0.391540550025;HIC1:0.387090726768;POU3F1..4:0.382806422787;bHLH_family:0.381967459361;NKX2-1,4:0.374123872913;HES1:0.370162142645;ZNF423:0.354297919028;GFI1:0.345677273492;NR6A1:0.331388139249;ESRRA:0.319676083461;NANOG{mouse}:0.308221537639;NFIX:0.305866275174;GATA6:0.298843928497;STAT2,4,6:0.276232784459;MAFB:0.275200363326;EGR1..3:0.26848435053;REST:0.254470196212;NFE2L2:0.254015250197;ZNF384:0.222254434367;GATA4:0.216349650598;NFATC1..3:0.214971367897;SP1:0.202512811551;SPZ1:0.188254908943;TFAP2{A,C}:0.166264623586;LEF1_TCF7_TCF7L1,2:0.152033116034;HLF:0.110214596062;HOXA9_MEIS1:0.107103696645;SOX2:0.104299485816;RREB1:0.0847933618451;BACH2:0.0561670485502;PRDM1:0.0525325661929;HSF1,2:0.0337912150219;PAX8:0.0206057895084;FOS_FOS{B,L1}_JUN{B,D}:0.0190071299158;NHLH1,2:0.00593544540036;MZF1:-0.00993744796577;LMO2:-0.020086730413;ZNF143:-0.032112652036;MYFfamily:-0.0431466105905;HMGA1,2:-0.0499386420462;MTF1:-0.0628595657875;ATF6:-0.0706715856149;HNF1A:-0.0776751492289;GZF1:-0.0801542567699;POU2F1..3:-0.0983620561554;FOXL1:-0.0985689336974;PAX6:-0.110863343526;CDC5L:-0.122346357575;TFDP1:-0.127402178928;ATF2:-0.129559251795;AIRE:-0.131151354512;VSX1,2:-0.138244992343;CRX:-0.146114343565;NANOG:-0.153663332692;HNF4A_NR2F1,2:-0.160058811711;ELK1,4_GABP{A,B1}:-0.164613948396;SOX{8,9,10}:-0.168853822033;NKX2-2,8:-0.187115290797;FOSL2:-0.190718368048;TEF:-0.199712054531;EP300:-0.20451775117;E2F1..5:-0.209705022014;PAX1,9:-0.239933656135;PAX3,7:-0.247154494458;JUN:-0.247702178774;POU5F1:-0.249051887284;AHR_ARNT_ARNT2:-0.255189656529;POU1F1:-0.267285614848;HOX{A4,D4}:-0.267346799762;CEBPA,B_DDIT3:-0.274700880997;ARID5B:-0.280889594647;SNAI1..3:-0.290507460547;MYOD1:-0.299321578615;NFY{A,B,C}:-0.302416648971;PAX2:-0.32054151921;MYB:-0.333061800453;NRF1:-0.335376991057;PBX1:-0.358560879039;RUNX1..3:-0.377299250246;RFX1:-0.37980207342;NFE2:-0.383244007206;NFKB1_REL_RELA:-0.389929198332;ZFP161:-0.408541150193;YY1:-0.418719785017;SOX5:-0.422075451201;PRRX1,2:-0.429404992978;NKX6-1,2:-0.464470667891;SREBF1,2:-0.472907661767;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479506070391;NFIL3:-0.489482768935;MED-1{core}:-0.507336459245;ALX1:-0.512252809208;PDX1:-0.524288128392;ZEB1:-0.529479540509;FOXA2:-0.540106776097;ELF1,2,4:-0.546224295096;TGIF1:-0.550961820815;ETS1,2:-0.55564749741;IRF1,2:-0.564675255004;NR1H4:-0.609079599559;CUX2:-0.61291424777;TLX2:-0.617329554968;NKX2-3_NKX2-5:-0.625752378756;HBP1_HMGB_SSRP1_UBTF:-0.653942843861;SPIB:-0.656254693953;ATF4:-0.656520947208;OCT4_SOX2{dimer}:-0.658745164708;BPTF:-0.675630537039;RORA:-0.682007791759;SPI1:-0.695436917266;DBP:-0.720512794444;CDX1,2,4:-0.731512869526;ATF5_CREB3:-0.735960261604;FOX{D1,D2}:-0.768454383396;BREu{core}:-0.77439329525;FOX{F1,F2,J1}:-0.821648156933;POU6F1:-0.826489139515;IRF7:-0.855928003798;FOXQ1:-0.876556869786;FOXP3:-0.903804096167;FOXO1,3,4:-0.943340089679;FOX{I1,J2}:-0.979298326931;IKZF2:-0.986188668853;CREB1:-1.01659363897;HOX{A6,A7,B6,B7}:-1.06916758417;STAT1,3:-1.07174538847;DMAP1_NCOR{1,2}_SMARC:-1.16169862589;FOXP1:-1.19157882274;T:-1.22563209356;PAX4:-1.24731738362;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29517131638;RBPJ:-1.3734445448;PITX1..3:-1.3915867758;ZBTB16:-1.42728170112;FOXN1:-1.47042411851;RFX2..5_RFXANK_RFXAP:-1.59530913331;FOXD3:-1.69593013024
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11268-116G8;search_select_hide=table117:FF:11268-116G8
}}
}}

Latest revision as of 16:29, 3 June 2020

Name:Fibroblast - Cardiac, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12498
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stage22 weeks old fetus
sexmale
ageembryo 22week
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1592
catalog numberCA306-R10f
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005836
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12498 CAGE DRX008243 DRR009115
Accession ID Hg19

Library idBAMCTSS
CNhs12498 DRZ000540 DRZ001925
Accession ID Hg38

Library idBAMCTSS
CNhs12498 DRZ011890 DRZ013275
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005836
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.TGACCA sRNA-Seq DRX037205 DRR041571
Accession ID Hg19

Library idBAMCTSS
SRhi10013.TGACCA DRZ007213


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.327
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00599
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.18
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.231
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.327
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.297
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.352
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.193
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.193
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.286
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.193
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0196
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0979
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.116
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.511
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.327
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.511
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.511
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.554
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.64
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12498

Jaspar motifP-value
MA0002.20.128
MA0003.10.484
MA0004.10.498
MA0006.10.116
MA0007.10.42
MA0009.10.232
MA0014.10.402
MA0017.10.904
MA0018.25.37713e-5
MA0019.10.262
MA0024.10.0178
MA0025.10.0634
MA0027.10.475
MA0028.10.00897
MA0029.10.0355
MA0030.10.354
MA0031.10.0202
MA0035.20.414
MA0038.10.353
MA0039.20.933
MA0040.10.808
MA0041.10.339
MA0042.10.632
MA0043.13.45333e-5
MA0046.10.278
MA0047.20.297
MA0048.10.626
MA0050.11.07886e-6
MA0051.10.00499
MA0052.10.482
MA0055.10.831
MA0057.10.112
MA0058.10.175
MA0059.10.811
MA0060.10.118
MA0061.10.0361
MA0062.21.26894e-7
MA0065.20.446
MA0066.10.63
MA0067.10.0137
MA0068.10.854
MA0069.10.619
MA0070.10.816
MA0071.10.649
MA0072.10.396
MA0073.10.871
MA0074.10.577
MA0076.12.94022e-4
MA0077.10.837
MA0078.10.266
MA0079.20.348
MA0080.22.00488e-9
MA0081.16.63092e-4
MA0083.13.2595e-5
MA0084.10.777
MA0087.10.922
MA0088.10.593
MA0090.13.63992e-5
MA0091.10.0433
MA0092.10.169
MA0093.10.456
MA0099.20.427
MA0100.10.0454
MA0101.10.0184
MA0102.20.0171
MA0103.10.264
MA0104.20.115
MA0105.10.0839
MA0106.10.161
MA0107.10.0148
MA0108.24.78383e-11
MA0111.10.261
MA0112.20.148
MA0113.10.592
MA0114.10.298
MA0115.10.0302
MA0116.10.702
MA0117.10.325
MA0119.10.167
MA0122.10.973
MA0124.10.0843
MA0125.10.41
MA0131.10.155
MA0135.10.211
MA0136.15.47247e-9
MA0137.20.447
MA0138.20.467
MA0139.10.979
MA0140.10.429
MA0141.10.472
MA0142.10.857
MA0143.10.916
MA0144.10.757
MA0145.10.215
MA0146.10.748
MA0147.10.264
MA0148.10.444
MA0149.10.961
MA0150.10.11
MA0152.10.214
MA0153.10.272
MA0154.10.634
MA0155.10.196
MA0156.15.89231e-7
MA0157.10.0701
MA0159.10.57
MA0160.10.271
MA0162.10.0533
MA0163.10.9
MA0164.10.881
MA0258.10.579
MA0259.10.903



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12498

Novel motifP-value
10.586
100.0411
1000.861
1010.077
1020.703
1030.448
1040.642
1050.735
1060.318
1070.0356
1080.224
1090.675
110.595
1100.672
1110.148
1120.681
1130.271
1140.948
1150.0218
1160.0413
1170.12
1180.881
1190.801
120.73
1200.372
1210.951
1220.654
1236.13859e-4
1240.242
1250.317
1260.446
1270.938
1280.271
1290.317
130.771
1300.678
1310.249
1320.385
1330.609
1340.665
1350.474
1360.892
1370.00978
1380.167
1390.542
140.356
1400.989
1410.563
1420.707
1430.552
1440.912
1450.533
1460.341
1470.211
1480.0804
1490.0191
150.735
1500.248
1510.973
1520.0655
1530.643
1540.207
1550.162
1560.35
1570.135
1580.0117
1590.847
160.0711
1600.0316
1610.425
1620.787
1630.989
1640.565
1650.353
1660.158
1670.371
1680.985
1690.0631
170.544
180.55
190.0298
20.158
200.301
210.777
220.275
230.434
240.734
250.317
260.593
270.501
280.0959
290.891
30.652
300.127
310.231
321.33199e-11
330.604
340.379
350.537
360.0576
370.996
380.705
390.251
40.843
400.923
410.8
420.479
430.922
440.229
450.516
460.718
470.906
480.791
490.721
50.75
500.901
510.893
520.402
530.138
540.81
550.829
560.983
570.954
580.157
590.0833
60.599
600.989
610.639
620.442
630.594
640.995
650.471
660.663
670.619
680.716
690.12
70.515
700.721
710.651
720.891
730.0437
740.662
750.579
760.152
770.0123
780.374
790.0105
80.184
800.584
810.799
820.375
830.598
840.586
850.271
860.791
870.109
880.324
890.0547
90.645
900.00869
910.642
920.976
930.511
940.923
950.896
960.706
970.714
980.774
990.00748



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12498


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11268-116G8&oldid=4576322"