FF:11278-116H9: Difference between revisions

Latest revision as of 16:30, 3 June 2020

Name:	Placental Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11079
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	placenta
dev stage	fetus
sex	unknown
age	NA
cell type	placental epithelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2628
catalog number	CA230-R10f
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005640

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11079		CAGE		DRX008404		DRR009276

Accession ID Hg19

Library id		BAM		CTSS
CNhs11079		DRZ000701		DRZ002086

Accession ID Hg38

Library id		BAM		CTSS
CNhs11079		DRZ012051		DRZ013436

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10049		download		download		download		download

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005640

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.CCGTCC		sRNA-Seq		DRX037046		DRR041412

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.CCGTCC		DRZ007054

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.22
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0972
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.318
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.637
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.176
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.762
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0664
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.666
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0722
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.115
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.694
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.174
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.674
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.103
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.264
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.115
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.345
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0782
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.115
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0.115
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.115
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11079

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.244
MA0003.1	MA0003.1	0.466
MA0004.1	MA0004.1	0.0523
MA0006.1	MA0006.1	0.118
MA0007.1	MA0007.1	0.0263
MA0009.1	MA0009.1	0.653
MA0014.1	MA0014.1	0.302
MA0017.1	MA0017.1	0.7
MA0018.2	MA0018.2	0.0103
MA0019.1	MA0019.1	0.00104
MA0024.1	MA0024.1	0.14
MA0025.1	MA0025.1	0.285
MA0027.1	MA0027.1	0.806
MA0028.1	MA0028.1	1.89992e-6
MA0029.1	MA0029.1	0.178
MA0030.1	MA0030.1	0.191
MA0031.1	MA0031.1	0.0786
MA0035.2	MA0035.2	0.0353
MA0038.1	MA0038.1	5.55625e-4
MA0039.2	MA0039.2	0.00494
MA0040.1	MA0040.1	0.921
MA0041.1	MA0041.1	0.405
MA0042.1	MA0042.1	0.716
MA0043.1	MA0043.1	0.747
MA0046.1	MA0046.1	0.326
MA0047.2	MA0047.2	0.813
MA0048.1	MA0048.1	0.536
MA0050.1	MA0050.1	4.24999e-10
MA0051.1	MA0051.1	6.39631e-6
MA0052.1	MA0052.1	0.329
MA0055.1	MA0055.1	2.80064e-5
MA0057.1	MA0057.1	0.77
MA0058.1	MA0058.1	0.0189
MA0059.1	MA0059.1	0.219
MA0060.1	MA0060.1	1.06498e-7
MA0061.1	MA0061.1	0.948
MA0062.2	MA0062.2	2.52653e-7
MA0065.2	MA0065.2	0.0698
MA0066.1	MA0066.1	0.206
MA0067.1	MA0067.1	0.727
MA0068.1	MA0068.1	0.875
MA0069.1	MA0069.1	0.918
MA0070.1	MA0070.1	0.0312
MA0071.1	MA0071.1	0.828
MA0072.1	MA0072.1	0.0675
MA0073.1	MA0073.1	0.697
MA0074.1	MA0074.1	0.481
MA0076.1	MA0076.1	1.15119e-7
MA0077.1	MA0077.1	0.92
MA0078.1	MA0078.1	0.782
MA0079.2	MA0079.2	0.32
MA0080.2	MA0080.2	3.63497e-8
MA0081.1	MA0081.1	0.272
MA0083.1	MA0083.1	0.595
MA0084.1	MA0084.1	0.383
MA0087.1	MA0087.1	0.724
MA0088.1	MA0088.1	0.17
MA0090.1	MA0090.1	0.00105
MA0091.1	MA0091.1	0.799
MA0092.1	MA0092.1	0.39
MA0093.1	MA0093.1	0.0589
MA0099.2	MA0099.2	2.21451e-10
MA0100.1	MA0100.1	0.284
MA0101.1	MA0101.1	0.285
MA0102.2	MA0102.2	0.00125
MA0103.1	MA0103.1	0.00143
MA0104.2	MA0104.2	0.702
MA0105.1	MA0105.1	0.773
MA0106.1	MA0106.1	0.0607
MA0107.1	MA0107.1	0.237
MA0108.2	MA0108.2	5.35537e-15
MA0111.1	MA0111.1	0.822
MA0112.2	MA0112.2	0.175
MA0113.1	MA0113.1	0.0254
MA0114.1	MA0114.1	0.285
MA0115.1	MA0115.1	0.621
MA0116.1	MA0116.1	0.641
MA0117.1	MA0117.1	0.654
MA0119.1	MA0119.1	0.787
MA0122.1	MA0122.1	0.592
MA0124.1	MA0124.1	0.143
MA0125.1	MA0125.1	0.0985
MA0131.1	MA0131.1	0.914
MA0135.1	MA0135.1	0.14
MA0136.1	MA0136.1	0.0452
MA0137.2	MA0137.2	0.513
MA0138.2	MA0138.2	0.603
MA0139.1	MA0139.1	0.983
MA0140.1	MA0140.1	0.835
MA0141.1	MA0141.1	0.395
MA0142.1	MA0142.1	0.902
MA0143.1	MA0143.1	0.26
MA0144.1	MA0144.1	0.963
MA0145.1	MA0145.1	0.215
MA0146.1	MA0146.1	0.0253
MA0147.1	MA0147.1	0.533
MA0148.1	MA0148.1	0.763
MA0149.1	MA0149.1	0.386
MA0150.1	MA0150.1	0.652
MA0152.1	MA0152.1	0.931
MA0153.1	MA0153.1	0.503
MA0154.1	MA0154.1	0.389
MA0155.1	MA0155.1	0.403
MA0156.1	MA0156.1	0.484
MA0157.1	MA0157.1	0.0472
MA0159.1	MA0159.1	0.171
MA0160.1	MA0160.1	0.179
MA0162.1	MA0162.1	0.0955
MA0163.1	MA0163.1	0.0946
MA0164.1	MA0164.1	0.295
MA0258.1	MA0258.1	0.64
MA0259.1	MA0259.1	0.697

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11079

Novel motif	Logo	P-value
1	1	0.828
10	10	0.886
100	100	0.145
101	101	0.0839
102	102	0.127
103	103	0.397
104	104	0.48
105	105	0.109
106	106	0.228
107	107	0.909
108	108	0.807
109	109	4.62919e-5
11	11	0.437
110	110	0.119
111	111	0.572
112	112	0.847
113	113	0.775
114	114	0.665
115	115	0.428
116	116	0.31
117	117	0.0501
118	118	0.13
119	119	0.396
12	12	0.465
120	120	0.128
121	121	0.158
122	122	0.00235
123	123	0.0128
124	124	0.21
125	125	0.68
126	126	0.445
127	127	0.756
128	128	0.552
129	129	0.292
13	13	0.00778
130	130	0.23
131	131	0.148
132	132	0.964
133	133	0.139
134	134	0.17
135	135	0.568
136	136	0.012
137	137	0.062
138	138	0.0962
139	139	0.565
14	14	0.892
140	140	0.912
141	141	0.506
142	142	0.162
143	143	0.818
144	144	0.967
145	145	0.877
146	146	0.26
147	147	0.709
148	148	0.00769
149	149	0.552
15	15	0.86
150	150	0.297
151	151	0.482
152	152	0.0315
153	153	0.0355
154	154	0.235
155	155	0.0655
156	156	0.0149
157	157	0.281
158	158	0.656
159	159	0.964
16	16	0.245
160	160	0.15
161	161	0.0679
162	162	0.901
163	163	0.767
164	164	0.312
165	165	0.702
166	166	0.114
167	167	0.432
168	168	0.963
169	169	0.0805
17	17	0.169
18	18	0.834
19	19	0.743
2	2	0.251
20	20	0.113
21	21	0.569
22	22	0.0774
23	23	0.198
24	24	0.264
25	25	0.736
26	26	0.272
27	27	0.405
28	28	0.94
29	29	0.0243
3	3	0.877
30	30	0.091
31	31	0.476
32	32	0.542
33	33	0.0857
34	34	0.849
35	35	0.16
36	36	0.448
37	37	0.128
38	38	0.463
39	39	0.242
4	4	0.511
40	40	6.82331e-4
41	41	0.769
42	42	0.943
43	43	0.738
44	44	0.97
45	45	0.141
46	46	0.897
47	47	0.542
48	48	0.218
49	49	0.893
5	5	0.415
50	50	0.365
51	51	0.561
52	52	0.72
53	53	0.27
54	54	0.961
55	55	0.49
56	56	0.723
57	57	0.625
58	58	0.575
59	59	0.133
6	6	0.898
60	60	0.699
61	61	0.389
62	62	0.299
63	63	0.824
64	64	0.406
65	65	0.644
66	66	0.0315
67	67	0.328
68	68	0.306
69	69	0.0073
7	7	0.244
70	70	0.79
71	71	0.64
72	72	0.533
73	73	0.0039
74	74	0.0241
75	75	0.0985
76	76	0.938
77	77	0.0634
78	78	0.117
79	79	0.853
8	8	0.974
80	80	0.819
81	81	0.123
82	82	0.857
83	83	0.826
84	84	0.366
85	85	0.997
86	86	0.884
87	87	0.017
88	88	0.372
89	89	0.0917
9	9	0.719
90	90	0.155
91	91	0.463
92	92	0.0896
93	93	0.987
94	94	0.993
95	95	0.00153
96	96	0.678
97	97	0.442
98	98	0.912
99	99	0.0946

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11079

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000136 human placental epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11278-116H9
+|DRA_sample_Accession=CAGE@SAMD00005640
-|name=Placental Epithelial Cells, donor1
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005640
-|sample_id=11278
+|HumanCAGEScanFiles=NCig10049;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Placental%2520Epithelial%2520Cells%252c%2520donor1.NCig10049.11278-116H9.hg19.GCTATA.pairs.bed.gz
-|rna_tube_id=116H9
+|accession_numbers=CAGE;DRX008404;DRR009276;DRZ000701;DRZ002086;DRZ012051;DRZ013436
-|rna_box=116
+|accession_numbers_RNASeq=sRNA-Seq;DRX037046;DRR041412;DRZ007054
-|rna_position=H9
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474
-|sample_cell_lot=N/A
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577
-|sample_cell_catalog=N/A
-|sample_company=Cell Applications
-|rna_lot_number=2628
-|rna_catalog_number=CA230-R10f
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=fetus
-|sample_tissue=placenta
-|sample_donor(cell lot)=
-|sample_sex=unknown
-|sample_age=
-|sample_ethnicity=
-|rna_rin=
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=placental epithelial cell
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
-|rna_weight_ug=10
-|rna_concentration=1
-|sample_note=
-|profile_hcage=CNhs11079,LSID724,release008,COMPLETED
-|profile_cagescan=NCig10049,,,
-|profile_srnaseq=SRhi10004,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000255,CL:0000349,CL:0000548,CL:0002371,CL:0002577
-|ancestors_in_anatomy_facet=
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000136
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
+|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.92!826.63!HAND1;;chr17:7493405..7493419,-!p1@SOX15!2.18!149.44!SOX15;;chr2:19558373..19558392,-!p1@OSR1!1.80!165.51!OSR1;;chr10:8096772..8096787,+!p2@GATA3!1.70!57.90!GATA3;;chr19:46806868..46806883,+!p3@HIF3A!1.69!47.59!HIF3A;;chr1:201979743..201979762,+!p1@ELF3!1.66!44.26!ELF3;;chr19:45579725..45579743,-!p1@ZNF296!1.65!188.55!ZNF296;;chr3:111314186..111314204,-!p1@ZBED2!1.64!42.74!ZBED2;;chr1:38512457..38512474,-!p1@POU3F1!1.63!45.47!POU3F1;;chr1:209979467..209979494,-!p1@IRF6!1.58!40.92!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.22!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.50!30.92!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.49!36.38!GATA3;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.49!HIF3A;;chr11:65554563..65554576,+!p2@OVOL1!1.44!26.68!OVOL1;;chr20:39317868..39317884,-!p1@MAFB!1.40!272.81!MAFB;;chr6:391743..391759,+!p1@IRF4!1.38!22.73!IRF4;;chr5:2751762..2751784,-!p1@IRX2!1.32!20.01!IRX2;;chr4:188916918..188916942,+!p1@ZFP42!1.30!18.79!ZFP42;;chr8:49833978..49833996,-!p1@SNAI2!1.25!335.26!SNAI2;;chr9:110252035..110252057,-!p1@KLF4!1.21!241.59!KLF4;;chr8:49833948..49833973,-!p2@SNAI2!1.21!95.49!SNAI2;;chr4:174451370..174451387,-!p1@HAND2!1.21!15.16!HAND2;;chr17:38256822..38256851,-!p1@NR1D1!1.20!116.10!NR1D1;;chr5:3595961..3595975,+!p3@IRX1!1.19!14.55!IRX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.18!17.88!TFAP2C;;chr16:31076332..31076388,-!p3@ZNF668!1.17!13.64!ZNF668;;chr16:67881588..67881612,-!p2@CENPT!1.16!18.49!CENPT;;chr6:10415276..10415341,-!p2@TFAP2A!1.15!16.07!TFAP2A;;chr5:3595934..3595957,+!p2@IRX1!1.14!12.73!IRX1;;chr4:174450089..174450153,-!p2@HAND2!1.14!12.73!HAND2;;chr10:8095593..8095625,+!p3@GATA3!1.12!14.25!GATA3;;chr11:65554528..65554546,+!p1@OVOL1!1.11!11.82!OVOL1;;chr5:3595977..3595999,+!p1@IRX1!1.11!11.82!IRX1;;chr8:102504979..102505010,+!p2@GRHL2!1.11!11.82!GRHL2;;chr17:45928521..45928539,-!p1@SP6!1.10!11.52!SP6;;chr20:18038521..18038571,-!p1@OVOL2!1.06!10.61!OVOL2;;chr8:102504690..102504704,+!p3@GRHL2!1.06!10.61!GRHL2;;chr18:77155922..77155939,+!p1@NFATC1!1.05!28.19!NFATC1;;chr3:111314230..111314241,-!p2@ZBED2!1.04!10.00!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.03!16.37!MSX2;;chr1:935398..935465,-!p2@HES4!1.02!19.70!HES4;;chr6:85473156..85473210,-!p2@TBX18!1.02!11.52!TBX18;;chr19:17356189..17356221,-!p2@NR2F6!1.00!14.85!NR2F6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.00!9.09!PEG3;;chr6:10412600..10412637,-!p1@TFAP2A!0.99!14.85!TFAP2A;;chr1:212782094..212782109,+!p1@ATF3!0.98!236.44!ATF3;;chr19:46800289..46800327,+!p2@HIF3A!0.98!8.49!HIF3A;;chr2:46524897..46524911,+!p2@EPAS1!0.97!23.95!EPAS1;;chr2:231084820..231084836,-!p5@SP110!0.97!9.70!SP110;;chr1:209979411..209979433,-!p2@IRF6!0.96!8.18!IRF6;;chr11:47236584..47236679,+!p1@DDB2!0.95!89.12!DDB2;;chr6:19837592..19837621,+!p1@ID4!0.95!50.02!ID4;;chr5:153857819..153857824,-!p3@HAND1!0.95!7.88!HAND1;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.88!IRX2;;chr1:6479968..6479986,-!p1@HES2!0.95!7.88!HES2;;chr22:38598086..38598105,+!p1@MAFF!0.93!83.97!MAFF;;chr11:46299539..46299620,+!p2@CREB3L1!0.93!13.03!CREB3L1;;chr5:174151612..174151633,+!p2@MSX2!0.92!7.28!MSX2;;chr1:59249732..59249749,-!p2@JUN!0.90!88.21!JUN;;chr16:29818199..29818216,+!p11@MAZ!0.90!11.52!MAZ;;chr19:45971246..45971265,+!p1@FOSB!0.88!129.44!FOSB;;chr11:46722560..46722595,+!p1@ZNF408!0.88!36.38!ZNF408;;chr13:73633131..73633149,+!p1@KLF5!0.87!73.05!KLF5;;chr14:75988771..75988826,+!p1@BATF!0.87!8.79!BATF;;chr1:26496459..26496470,+!p2@ZNF593!0.86!12.43!ZNF593;;chr16:67867749..67867852,-!p1@CENPT!0.85!147.62!CENPT;;chr3:39195037..39195069,-!p2@CSRNP1!0.84!39.10!CSRNP1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.76!TFAP2A;;chrX:106960285..106960299,-!p1@TSC22D3!0.82!164.30!TSC22D3;;chr2:239148671..239148686,-!p1@HES6!0.79!20.61!HES6;;chr11:113930291..113930339,+!p2@ZBTB16!0.79!8.79!ZBTB16;;chr3:39195139..39195150,-!p3@CSRNP1!0.77!6.37!CSRNP1;;chr17:38256590..38256599,-!p8@NR1D1!0.77!4.85!NR1D1;;chr1:59249707..59249727,-!p1@JUN!0.75!218.55!JUN;;chr3:39195075..39195088,-!p1@CSRNP1!0.75!31.83!CSRNP1;;chr11:113930425..113930471,+!p1@ZBTB16!0.75!6.97!ZBTB16;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.71!MYBL2;;chr9:110250697..110250738,-!p2@KLF4!0.74!5.46!KLF4;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.55!KDM5D;;chr12:132628963..132629027,+!p1@NOC4L!0.73!70.93!NOC4L;;chr3:52001426..52001447,-!p3@PCBP4!0.73!13.34!PCBP4;;chrY:2803415..2803468,+!p1@ZFY!0.72!4.24!ZFY;;chr17:48072574..48072597,-!p1@DLX3!0.72!4.24!DLX3;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.24!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!0.72!4.24!ELF3;;chr1:26496382..26496457,+!p1@ZNF593!0.71!283.12!ZNF593;;chr11:46299199..46299233,+!p1@CREB3L1!0.71!23.64!CREB3L1;;chr20:42295745..42295765,+!p1@MYBL2!0.69!72.45!MYBL2;;chr16:29818160..29818188,+!p6@MAZ!0.69!20.61!MAZ;;chr20:32274150..32274166,-!p2@E2F1!0.69!7.88!E2F1;;chr8:28243813..28243839,-!p4@ZNF395!0.69!7.58!ZNF395;;chr5:3596206..3596210,+!p4@IRX1!0.69!3.94!IRX1;;chr2:16080659..16080685,+!p1@MYCN!0.69!3.94!MYCN;;chr20:18038486..18038520,-!p2@OVOL2!0.69!3.94!OVOL2;;chr19:57946684..57946723,+!p1@ZNF749!0.68!48.20!ZNF749;;chr11:615942..615957,-!p1@IRF7!0.68!41.23!IRF7;;chr12:57914286..57914304,-!p1@DDIT3!0.67!155.81!DDIT3;;chr19:53289995..53290050,-!p1@ZNF600!0.67!16.98!ZNF600;;chr16:29818132..29818144,+!p12@MAZ!0.67!8.18!MAZ;;chr17:38256799..38256815,-!p3@NR1D1!0.67!7.28!NR1D1;;chr6:10412392..10412409,-!p4@TFAP2A!0.67!4.24!TFAP2A;;chr2:5832508..5832524,+!p1@SOX11!0.67!3.64!SOX11;;chr22:21356345..21356367,-!p3@THAP7!0.66!5.15!THAP7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.65!288.58!TAX1BP3;;chr20:32274179..32274213,-!p1@E2F1!0.65!26.98!E2F1;;chr16:30537839..30537929,-!p1@ZNF768!0.65!25.16!ZNF768;;chr18:3452133..3452150,+!p19@TGIF1!0.65!3.94!TGIF1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.64!35.16!PPP1R13L;;chr1:161015676..161015694,-!p3@USF1!0.64!14.85!USF1;;chr17:45928443..45928473,-!p2@SP6!0.64!3.33!SP6;;chr4:299227..299272,-!p1@ZNF732!0.64!3.33!ZNF732;;chr19:42759266..42759290,-!p1@ERF!0.63!122.77!ERF;;chr3:52001448..52001478,-!p2@PCBP4!0.63!53.65!PCBP4;;chr19:42580274..42580375,+!p1@ZNF574!0.63!44.56!ZNF574;;chr22:21356378..21356422,-!p2@THAP7!0.63!34.25!THAP7;;chr19:1592714..1592762,-!p1@MBD3!0.63!28.80!MBD3;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.64!GATA2;;chr9:35732561..35732587,+!p3@CREB3!0.63!16.07!CREB3;;chr6:12012536..12012554,+!p4@HIVEP1!0.63!8.79!HIVEP1;;chr8:23540441..23540466,-!p1@NKX3-1!0.63!7.28!NKX3-1;;chr7:148892653..148892729,+!p1@ZNF282!0.62!54.56!ZNF282;;chr9:35732592..35732640,+!p1@CREB3!0.62!49.41!CREB3;;chr18:3449720..3449749,+!p2@TGIF1!0.62!7.58!TGIF1;;chr20:2673383..2673441,+!p1@EBF4!0.62!5.46!EBF4;;chr11:65667846..65667868,-!p1@FOSL1!0.61!98.52!FOSL1;;chr19:56632858..56632903,-!p2@ZNF787!0.61!8.49!ZNF787;;chrX:107018969..107019024,-!p6@TSC22D3!0.61!4.55!TSC22D3;;chr19:46806885..46806888,+!p11@HIF3A!0.61!3.03!HIF3A;;chr16:67881647..67881663,-!p3@CENPT!0.61!3.03!CENPT;;chr10:8097321..8097348,+!p4@GATA3!0.61!3.03!GATA3;;chr7:101460882..101460923,+!p5@CUX1!0.61!3.03!CUX1;;chr19:56632592..56632670,-!p1@ZNF787!0.60!81.84!ZNF787;;chr22:38597987..38598021,+!p2@MAFF!0.59!21.52!MAFF;;chr8:145159324..145159333,+!p5@MAF1!0.59!6.67!MAF1;;chr16:29817789..29817838,+!p2@MAZ!0.58!46.98!MAZ;;chr6:33422343..33422394,+!p1@ZBTB9!0.58!23.04!ZBTB9;;chr10:77161533..77161546,-!p2@ZNF503!0.58!13.34!ZNF503;;chr9:35732514..35732530,+!p5@CREB3!0.58!4.24!CREB3;;chr9:110251836..110251887,-!p4@KLF4!0.58!3.94!KLF4;;chr5:16465902..16465917,-!p1@ZNF622!0.57!80.94!ZNF622;;chr19:50169013..50169062,-!p2@IRF3!0.57!19.10!IRF3;;chr6:85474299..85474324,-!p1@TBX18!0.57!5.46!TBX18;;chr6:31515311..31515330,+!p3@NFKBIL1!0.57!4.24!NFKBIL1;;chr19:58400344..58400364,-!p2@ZNF814!0.57!4.24!ZNF814;;chr6:10419768..10419819,-!p6@TFAP2A!0.57!2.73!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!0.57!2.73!SOX17;;chr11:125034640..125034655,+!p1@PKNOX2!0.57!2.73!PKNOX2;;chr16:67881534..67881549,-!p4@CENPT!0.57!2.73!CENPT;;chr1:149858461..149858479,+!p1@BOLA1!0.56!1309.21!BOLA1;;chr17:7492684..7492778,-!p2@SOX15!0.56!6.37!SOX15;;chr10:48355030..48355090,+!p1@ZNF488!0.56!3.64!ZNF488;;chr8:145669791..145669834,-!p1@TONSL!0.55!8.79!TONSL;;chr1:8939265..8939367,-!p5@ENO1!0.55!6.06!ENO1;;chr16:3185051..3185068,+!p3@ZNF213!0.55!4.55!ZNF213;;chr6:126240356..126240379,+!p7@NCOA7!0.55!3.33!NCOA7;;chr3:71631382..71631413,-!p20@FOXP1!0.55!3.03!FOXP1;;chrX:48900871..48900890,-!p1@TFE3!0.54!163.08!TFE3;;chr16:29817841..29817865,+!p1@MAZ!0.54!68.20!MAZ;;chr9:35732647..35732678,+!p2@CREB3!0.54!16.98!CREB3;;chr19:12175535..12175554,+!p1@ZNF844!0.54!16.67!ZNF844;;chr2:27357446..27357475,-!p2@PREB!0.54!10.31!PREB;;chr11:47270436..47270464,+!p2@NR1H3!0.54!6.06!NR1H3;;chr8:145159277..145159282,+!p7@MAF1!0.54!4.24!MAF1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.54!3.33!L3MBTL4;;chr17:46620898..46620927,-!p9@HOXB2!0.54!3.03!HOXB2;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.67!DRAP1;;chr12:72056773..72056796,+!p3@THAP2!0.53!3.33!THAP2;;chr8:28243785..28243799,-!p6@ZNF395!0.53!3.03!ZNF395;;chr6:10412576..10412599,-!p5@TFAP2A!0.53!2.43!TFAP2A;;chr6:28048343..28048354,+!p1@ZNF165!0.53!2.43!ZNF165;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.43!MAFK;;chr18:76739816..76739822,+!p1@SALL3!0.53!2.43!SALL3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.53!2.43!TFCP2L1;;chr10:135121763..135121783,+!p5@ZNF511!0.53!2.43!ZNF511;;chr14:37131058..37131139,+!p1@PAX9!0.53!2.43!PAX9;;chr7:4815238..4815327,+!p1@KIAA0415!0.52!66.38!AP5Z1;;chr19:59031131..59031193,-!p1@ZBTB45!0.52!39.41!ZBTB45;;chr8:145159357..145159373,+!p3@MAF1!0.52!37.59!MAF1;;chr17:61920280..61920343,-!p2@SMARCD2!0.52!29.10!SMARCD2;;chr9:130186653..130186734,+!p1@ZNF79!0.52!21.52!ZNF79;;chr1:204042233..204042249,+!p1@SOX13!0.52!18.49!SOX13;;chr14:69262789..69262822,-!p2@ZFP36L1!0.52!7.28!ZFP36L1;;chr16:3185024..3185045,+!p2@ZNF213!0.52!4.85!ZNF213;;chr19:50169064..50169121,-!p1@IRF3!0.51!41.53!IRF3;;chr22:30162924..30163005,-!p1@ZMAT5!0.51!36.07!ZMAT5;;chr6:44233252..44233296,-!p1@NFKBIE!0.51!28.80!NFKBIE;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 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 43: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor1.CNhs11079.11278-116H9.hg38.nobarcode.ctss.bed.gz
+|id=FF:11278-116H9
+|is_a=EFO:0002091;;FF:0000136
+|is_obsolete=
+|library_id=CNhs11079
+|library_id_phase_based=2:CNhs11079
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11278
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.CCGTCC.11278
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11278
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.CCGTCC.11278
+|name=Placental Epithelial Cells, donor1
+|namespace=FANTOM5
+|part_of=
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+|profile_hcage=CNhs11079,LSID724,release008,COMPLETED
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+|rna_lot_number=2628
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+|rna_position=H9
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+|rna_tube_id=116H9
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+|rnaseq_library_id=SRhi10004.CCGTCC
+|sample_age=
+|sample_category=primary cells
+|sample_cell_catalog=N/A
+|sample_cell_line=
+|sample_cell_lot=N/A
+|sample_cell_type=placental epithelial cell
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Cell Applications
+|sample_description=
+|sample_dev_stage=fetus
+|sample_disease=
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+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.31880679148445e-251!GO:0043226;organelle;2.76560871079591e-205!GO:0043229;intracellular organelle;1.10420256216197e-204!GO:0043231;intracellular membrane-bound organelle;7.64495827496832e-199!GO:0043227;membrane-bound organelle;1.77036047695266e-198!GO:0005737;cytoplasm;2.29911726774268e-178!GO:0044422;organelle part;1.5086040642793e-144!GO:0044446;intracellular organelle part;2.70116876604989e-143!GO:0044444;cytoplasmic part;7.18442840763761e-125!GO:0032991;macromolecular complex;1.12714022669159e-102!GO:0044238;primary metabolic process;3.07123400125347e-95!GO:0044237;cellular metabolic process;6.85062084767737e-95!GO:0030529;ribonucleoprotein complex;2.36756293673358e-94!GO:0043170;macromolecule metabolic process;4.45745038892422e-90!GO:0005634;nucleus;7.60354695434868e-85!GO:0043233;organelle lumen;2.77816835656375e-73!GO:0031974;membrane-enclosed lumen;2.77816835656375e-73!GO:0005739;mitochondrion;4.35171136901287e-73!GO:0044428;nuclear part;2.38115714630238e-71!GO:0005515;protein binding;2.81059217636845e-71!GO:0003723;RNA binding;6.76697807488493e-68!GO:0005840;ribosome;1.24904478832184e-58!GO:0043283;biopolymer metabolic process;4.61774517593599e-56!GO:0006412;translation;6.62504807796582e-55!GO:0006396;RNA processing;1.23786090954392e-54!GO:0003735;structural constituent of ribosome;3.08551006091458e-52!GO:0043234;protein complex;3.56900141141694e-50!GO:0010467;gene expression;1.55947377324579e-49!GO:0019538;protein metabolic process;2.8791168116e-48!GO:0044429;mitochondrial part;5.18420260423385e-47!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.89279855715896e-47!GO:0031090;organelle membrane;8.8018718596988e-46!GO:0031981;nuclear lumen;2.34412403975046e-44!GO:0033279;ribosomal subunit;1.65452509542363e-43!GO:0044267;cellular protein metabolic process;3.98899199801731e-42!GO:0009058;biosynthetic process;4.20596950944803e-42!GO:0044260;cellular macromolecule metabolic process;6.77529799696233e-42!GO:0016043;cellular component organization and biogenesis;7.22817767403118e-42!GO:0044249;cellular biosynthetic process;1.66398164184299e-41!GO:0009059;macromolecule biosynthetic process;9.81809762614207e-40!GO:0033036;macromolecule localization;2.72026249887089e-39!GO:0043228;non-membrane-bound organelle;3.56734897784931e-39!GO:0043232;intracellular non-membrane-bound organelle;3.56734897784931e-39!GO:0015031;protein transport;7.89973891650552e-39!GO:0016071;mRNA metabolic process;1.63932935905203e-38!GO:0031967;organelle envelope;1.77695007742928e-38!GO:0031975;envelope;4.20988404348341e-38!GO:0005829;cytosol;4.92433891276015e-37!GO:0008104;protein localization;3.02641794019401e-36!GO:0008380;RNA splicing;3.44556954271522e-36!GO:0045184;establishment of protein localization;6.1289485153738e-36!GO:0006397;mRNA processing;3.86420963809776e-34!GO:0065003;macromolecular complex assembly;2.68835855405115e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.08639722803053e-31!GO:0006996;organelle organization and biogenesis;1.22349163119111e-31!GO:0022607;cellular component assembly;7.65127015569875e-31!GO:0005740;mitochondrial envelope;6.92881902535083e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.78497031804933e-30!GO:0046907;intracellular transport;3.53135747295848e-29!GO:0006259;DNA metabolic process;6.04700279956113e-29!GO:0003676;nucleic acid binding;6.87809527832807e-29!GO:0019866;organelle inner membrane;1.63855556461109e-28!GO:0031966;mitochondrial membrane;6.24623454926945e-28!GO:0005681;spliceosome;1.98027766649834e-27!GO:0005743;mitochondrial inner membrane;1.29921053535779e-26!GO:0006886;intracellular protein transport;1.94174014318287e-26!GO:0044445;cytosolic part;5.70977879547644e-25!GO:0005654;nucleoplasm;6.45144357266499e-25!GO:0016070;RNA metabolic process;1.01868650756959e-23!GO:0015935;small ribosomal subunit;3.68787146992204e-23!GO:0006119;oxidative phosphorylation;1.5542707561137e-22!GO:0044455;mitochondrial membrane part;3.53223795272145e-22!GO:0007049;cell cycle;1.4098956514497e-21!GO:0015934;large ribosomal subunit;1.42974445837754e-21!GO:0005730;nucleolus;3.07049531663806e-21!GO:0044451;nucleoplasm part;6.99425732577775e-21!GO:0031980;mitochondrial lumen;1.21122762776212e-20!GO:0005759;mitochondrial matrix;1.21122762776212e-20!GO:0016874;ligase activity;7.88076504689271e-20!GO:0006512;ubiquitin cycle;1.37744965697306e-18!GO:0006457;protein folding;1.42977217806476e-18!GO:0005746;mitochondrial respiratory chain;2.94225812709465e-18!GO:0051649;establishment of cellular localization;4.80868905886443e-18!GO:0051641;cellular localization;5.28147175481251e-18!GO:0005761;mitochondrial ribosome;9.79921724082577e-18!GO:0000313;organellar ribosome;9.79921724082577e-18!GO:0000166;nucleotide binding;1.28393282571888e-17!GO:0022402;cell cycle process;1.34623801015301e-17!GO:0016462;pyrophosphatase activity;6.29982145447509e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.31244563259457e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;8.78239440575799e-17!GO:0008134;transcription factor binding;8.78239440575799e-17!GO:0048770;pigment granule;2.91620385447556e-16!GO:0042470;melanosome;2.91620385447556e-16!GO:0022618;protein-RNA complex assembly;3.90219912356968e-16!GO:0042254;ribosome biogenesis and assembly;4.70333284011071e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.70333284011071e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.16983394202611e-16!GO:0017111;nucleoside-triphosphatase activity;7.16983394202611e-16!GO:0006974;response to DNA damage stimulus;9.95141896421244e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.41876358137871e-15!GO:0012505;endomembrane system;2.51280022623856e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.87505589517158e-15!GO:0003954;NADH dehydrogenase activity;2.87505589517158e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.87505589517158e-15!GO:0051186;cofactor metabolic process;2.97050563288079e-15!GO:0043285;biopolymer catabolic process;4.38510074003217e-15!GO:0000502;proteasome complex (sensu Eukaryota);6.89646869822111e-15!GO:0005783;endoplasmic reticulum;9.34584090073923e-15!GO:0000278;mitotic cell cycle;1.62120035147109e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.6778131562706e-14!GO:0044265;cellular macromolecule catabolic process;1.68644251197241e-14!GO:0043412;biopolymer modification;2.14833087225542e-14!GO:0006605;protein targeting;6.91075475243881e-14!GO:0009057;macromolecule catabolic process;9.39031231830272e-14!GO:0006399;tRNA metabolic process;1.06528080397854e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.20647654161477e-13!GO:0000375;RNA splicing, via transesterification reactions;1.20647654161477e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.20647654161477e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.32261711405902e-13!GO:0042773;ATP synthesis coupled electron transport;1.32261711405902e-13!GO:0008135;translation factor activity, nucleic acid binding;1.80279718946528e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.80809433894028e-13!GO:0045271;respiratory chain complex I;1.80809433894028e-13!GO:0005747;mitochondrial respiratory chain complex I;1.80809433894028e-13!GO:0051082;unfolded protein binding;2.68138232692626e-13!GO:0006281;DNA repair;2.87843038566328e-13!GO:0005694;chromosome;3.28329620942409e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;4.35747203373888e-13!GO:0019941;modification-dependent protein catabolic process;5.02050461935228e-13!GO:0043632;modification-dependent macromolecule catabolic process;5.02050461935228e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.30698779703593e-13!GO:0006511;ubiquitin-dependent protein catabolic process;7.1225297554869e-13!GO:0044257;cellular protein catabolic process;8.69084582265829e-13!GO:0030163;protein catabolic process;1.03402171422551e-12!GO:0006464;protein modification process;1.24347703542542e-12!GO:0032553;ribonucleotide binding;1.27481745558375e-12!GO:0032555;purine ribonucleotide binding;1.27481745558375e-12!GO:0044432;endoplasmic reticulum part;1.41588717978125e-12!GO:0044248;cellular catabolic process;1.91099360102387e-12!GO:0051276;chromosome organization and biogenesis;1.94228570614533e-12!GO:0006732;coenzyme metabolic process;2.28689830706271e-12!GO:0009719;response to endogenous stimulus;2.57738062894294e-12!GO:0044427;chromosomal part;3.15388391668078e-12!GO:0051726;regulation of cell cycle;6.29092866842286e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;6.39939685947717e-12!GO:0017076;purine nucleotide binding;6.96168550384643e-12!GO:0000074;regulation of progression through cell cycle;7.05097366845272e-12!GO:0016072;rRNA metabolic process;1.56112223316082e-11!GO:0006364;rRNA processing;1.65313439724362e-11!GO:0012501;programmed cell death;2.22589791689754e-11!GO:0065004;protein-DNA complex assembly;2.22589791689754e-11!GO:0006323;DNA packaging;2.27237190374179e-11!GO:0006915;apoptosis;2.36781698319728e-11!GO:0022403;cell cycle phase;2.38130288089482e-11!GO:0043687;post-translational protein modification;2.75781588122168e-11!GO:0016604;nuclear body;3.37425106025462e-11!GO:0005524;ATP binding;4.92761103436851e-11!GO:0005794;Golgi apparatus;8.25829616170717e-11!GO:0009055;electron carrier activity;8.43297581367847e-11!GO:0032559;adenyl ribonucleotide binding;8.7610824045011e-11!GO:0003743;translation initiation factor activity;2.15926832116001e-10!GO:0008639;small protein conjugating enzyme activity;2.28994999195656e-10!GO:0003712;transcription cofactor activity;2.56720623729142e-10!GO:0006333;chromatin assembly or disassembly;2.62734951774279e-10!GO:0006260;DNA replication;3.8442169675952e-10!GO:0007067;mitosis;4.25610414358835e-10!GO:0000087;M phase of mitotic cell cycle;4.98407744228751e-10!GO:0004842;ubiquitin-protein ligase activity;5.37674079020914e-10!GO:0008219;cell death;6.41760267733854e-10!GO:0016265;death;6.41760267733854e-10!GO:0031965;nuclear membrane;6.7973014533711e-10!GO:0030554;adenyl nucleotide binding;7.05245201596694e-10!GO:0006413;translational initiation;8.39484976483162e-10!GO:0019787;small conjugating protein ligase activity;9.33333280069135e-10!GO:0009259;ribonucleotide metabolic process;9.59267981078014e-10!GO:0006913;nucleocytoplasmic transport;1.04595975123143e-09!GO:0005635;nuclear envelope;1.12728642217547e-09!GO:0006446;regulation of translational initiation;1.14688375097555e-09!GO:0044453;nuclear membrane part;1.31769027737663e-09!GO:0008565;protein transporter activity;1.33185984584466e-09!GO:0016607;nuclear speck;1.40345866053999e-09!GO:0042623;ATPase activity, coupled;1.40345866053999e-09!GO:0000785;chromatin;1.42436911275472e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.47771366444413e-09!GO:0031497;chromatin assembly;1.75586608636677e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.75586608636677e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.75586608636677e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.75586608636677e-09!GO:0051169;nuclear transport;1.85925540914666e-09!GO:0016887;ATPase activity;1.99647773468291e-09!GO:0048193;Golgi vesicle transport;2.10373221606841e-09!GO:0006334;nucleosome assembly;2.63325372072559e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.97592673241125e-09!GO:0006163;purine nucleotide metabolic process;3.68784550748224e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.30062984842619e-09!GO:0065002;intracellular protein transport across a membrane;4.68086584514205e-09!GO:0006461;protein complex assembly;4.79599101691623e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.92090905277324e-09!GO:0006366;transcription from RNA polymerase II promoter;5.87029256312835e-09!GO:0043038;amino acid activation;5.94244771374317e-09!GO:0006418;tRNA aminoacylation for protein translation;5.94244771374317e-09!GO:0043039;tRNA aminoacylation;5.94244771374317e-09!GO:0050794;regulation of cellular process;6.11119526581497e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.53981848540502e-09!GO:0005768;endosome;7.79311480847687e-09!GO:0005789;endoplasmic reticulum membrane;7.79311480847687e-09!GO:0009150;purine ribonucleotide metabolic process;7.83157594037776e-09!GO:0007005;mitochondrion organization and biogenesis;1.08873599092848e-08!GO:0016881;acid-amino acid ligase activity;1.16188098837744e-08!GO:0009260;ribonucleotide biosynthetic process;1.2874711913375e-08!GO:0051188;cofactor biosynthetic process;1.70761921946577e-08!GO:0006164;purine nucleotide biosynthetic process;1.78652687989554e-08!GO:0017038;protein import;1.84745789775137e-08!GO:0004386;helicase activity;1.90687564677976e-08!GO:0015986;ATP synthesis coupled proton transport;2.3161318479892e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.3161318479892e-08!GO:0000279;M phase;2.3161318479892e-08!GO:0005643;nuclear pore;3.04304732759123e-08!GO:0016192;vesicle-mediated transport;3.04304732759123e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.74300020408117e-08!GO:0008026;ATP-dependent helicase activity;3.86109608609675e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.95774157740509e-08!GO:0042981;regulation of apoptosis;4.79004416115894e-08!GO:0009141;nucleoside triphosphate metabolic process;6.00377586115806e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.92401477529333e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.92401477529333e-08!GO:0043067;regulation of programmed cell death;6.92401477529333e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.20631080754711e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.20631080754711e-08!GO:0009060;aerobic respiration;9.03636546641521e-08!GO:0009056;catabolic process;9.54951819250735e-08!GO:0051301;cell division;1.11520510619314e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.27805991365237e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.27805991365237e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.36576440795336e-07!GO:0005793;ER-Golgi intermediate compartment;1.60647306728089e-07!GO:0048523;negative regulation of cellular process;2.1550703732902e-07!GO:0019829;cation-transporting ATPase activity;2.68439534933896e-07!GO:0016740;transferase activity;2.68439534933896e-07!GO:0046034;ATP metabolic process;2.76052705616208e-07!GO:0006916;anti-apoptosis;3.20540807528981e-07!GO:0050657;nucleic acid transport;3.62001022023326e-07!GO:0051236;establishment of RNA localization;3.62001022023326e-07!GO:0050658;RNA transport;3.62001022023326e-07!GO:0006754;ATP biosynthetic process;3.71099195202024e-07!GO:0006753;nucleoside phosphate metabolic process;3.71099195202024e-07!GO:0046930;pore complex;4.95606964622026e-07!GO:0048475;coated membrane;4.99149646320597e-07!GO:0030117;membrane coat;4.99149646320597e-07!GO:0045333;cellular respiration;5.97808896159042e-07!GO:0006403;RNA localization;6.03732259960302e-07!GO:0016779;nucleotidyltransferase activity;6.1985103149411e-07!GO:0032446;protein modification by small protein conjugation;6.63212903630708e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.84698700660671e-07!GO:0016567;protein ubiquitination;7.8502847489641e-07!GO:0009108;coenzyme biosynthetic process;9.3430879012308e-07!GO:0043069;negative regulation of programmed cell death;9.82054234388359e-07!GO:0043066;negative regulation of apoptosis;1.26755703799888e-06!GO:0005762;mitochondrial large ribosomal subunit;1.26762583835958e-06!GO:0000315;organellar large ribosomal subunit;1.26762583835958e-06!GO:0030120;vesicle coat;1.39822854983657e-06!GO:0030662;coated vesicle membrane;1.39822854983657e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.59502686843504e-06!GO:0009117;nucleotide metabolic process;1.66309577849252e-06!GO:0006752;group transfer coenzyme metabolic process;2.3898711989198e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.61040161853697e-06!GO:0044440;endosomal part;2.84636736952875e-06!GO:0010008;endosome membrane;2.84636736952875e-06!GO:0008033;tRNA processing;3.37201882927811e-06!GO:0051329;interphase of mitotic cell cycle;3.56401438304539e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.58271528198693e-06!GO:0045259;proton-transporting ATP synthase complex;3.60186355237654e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;3.89282336994378e-06!GO:0003697;single-stranded DNA binding;4.08268348095807e-06!GO:0003714;transcription corepressor activity;5.54454068720078e-06!GO:0043623;cellular protein complex assembly;5.62172739919221e-06!GO:0031324;negative regulation of cellular metabolic process;6.19696618940331e-06!GO:0006099;tricarboxylic acid cycle;6.20629181029871e-06!GO:0046356;acetyl-CoA catabolic process;6.20629181029871e-06!GO:0000314;organellar small ribosomal subunit;6.34449686191158e-06!GO:0005763;mitochondrial small ribosomal subunit;6.34449686191158e-06!GO:0050789;regulation of biological process;6.90960015907121e-06!GO:0016564;transcription repressor activity;7.43056350540489e-06!GO:0048519;negative regulation of biological process;7.43056350540489e-06!GO:0008654;phospholipid biosynthetic process;7.43056350540489e-06!GO:0000245;spliceosome assembly;7.48677183604796e-06!GO:0051325;interphase;7.92335044131656e-06!GO:0016568;chromatin modification;8.05126019423891e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.09764952244779e-06!GO:0016853;isomerase activity;8.5257372838646e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.70105667956758e-06!GO:0006084;acetyl-CoA metabolic process;9.70125629914941e-06!GO:0000786;nucleosome;1.24204056268138e-05!GO:0005788;endoplasmic reticulum lumen;1.25796193997315e-05!GO:0019222;regulation of metabolic process;1.36877808218149e-05!GO:0005667;transcription factor complex;1.41210215220192e-05!GO:0005770;late endosome;1.51851382828784e-05!GO:0051028;mRNA transport;1.52294792115156e-05!GO:0000151;ubiquitin ligase complex;1.67118996914588e-05!GO:0006793;phosphorus metabolic process;1.70700342358094e-05!GO:0006796;phosphate metabolic process;1.70700342358094e-05!GO:0043566;structure-specific DNA binding;1.70700342358094e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.89515737447106e-05!GO:0051246;regulation of protein metabolic process;1.94274679003409e-05!GO:0003899;DNA-directed RNA polymerase activity;2.13370877987273e-05!GO:0045786;negative regulation of progression through cell cycle;2.24565610840121e-05!GO:0016310;phosphorylation;2.31531081163718e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.32786474001201e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.61975555477725e-05!GO:0003724;RNA helicase activity;2.89776744956669e-05!GO:0016563;transcription activator activity;2.91171206592961e-05!GO:0003924;GTPase activity;3.20693423611405e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.24750208781458e-05!GO:0045454;cell redox homeostasis;3.30568651869811e-05!GO:0016859;cis-trans isomerase activity;3.30568651869811e-05!GO:0051170;nuclear import;3.42411333319761e-05!GO:0019843;rRNA binding;3.48793030510983e-05!GO:0003713;transcription coactivator activity;3.51848211401168e-05!GO:0065009;regulation of a molecular function;3.76995927858883e-05!GO:0046474;glycerophospholipid biosynthetic process;4.34964127366244e-05!GO:0051187;cofactor catabolic process;4.52795780917797e-05!GO:0004298;threonine endopeptidase activity;4.66982947425263e-05!GO:0009109;coenzyme catabolic process;4.8936204441603e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.01505698886328e-05!GO:0009892;negative regulation of metabolic process;5.41721799779702e-05!GO:0006606;protein import into nucleus;6.58995096450939e-05!GO:0005773;vacuole;6.71084830450409e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.39868490603466e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.88401204429832e-05!GO:0051789;response to protein stimulus;8.84509250948586e-05!GO:0006986;response to unfolded protein;8.84509250948586e-05!GO:0016023;cytoplasmic membrane-bound vesicle;8.9507919443654e-05!GO:0006091;generation of precursor metabolites and energy;9.38908617146577e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000115176100589195!GO:0046489;phosphoinositide biosynthetic process;0.00012484391346037!GO:0031988;membrane-bound vesicle;0.000125522203569311!GO:0044452;nucleolar part;0.000126420765863724!GO:0016491;oxidoreductase activity;0.000162778290599001!GO:0015630;microtubule cytoskeleton;0.000164656843942158!GO:0044431;Golgi apparatus part;0.000190007008901695!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000190007008901695!GO:0006626;protein targeting to mitochondrion;0.000224068949905253!GO:0019899;enzyme binding;0.000232281891440603!GO:0043021;ribonucleoprotein binding;0.000247246508333211!GO:0031982;vesicle;0.000258003004225164!GO:0043681;protein import into mitochondrion;0.000260837670953721!GO:0005798;Golgi-associated vesicle;0.00028291215768352!GO:0006650;glycerophospholipid metabolic process;0.000310965264256971!GO:0006261;DNA-dependent DNA replication;0.000339856835197585!GO:0031410;cytoplasmic vesicle;0.000344903428632685!GO:0006613;cotranslational protein targeting to membrane;0.000354866229467743!GO:0051427;hormone receptor binding;0.000395298952675869!GO:0048522;positive regulation of cellular process;0.00039696860442672!GO:0008186;RNA-dependent ATPase activity;0.000397610445122985!GO:0005525;GTP binding;0.00041280308740754!GO:0033116;ER-Golgi intermediate compartment membrane;0.000414874417035023!GO:0005769;early endosome;0.000442464364081586!GO:0007006;mitochondrial membrane organization and biogenesis;0.000468476719923878!GO:0008361;regulation of cell size;0.000485685407900856!GO:0051168;nuclear export;0.000486908005163088!GO:0031323;regulation of cellular metabolic process;0.000490420831679013!GO:0031252;leading edge;0.000490420831679013!GO:0030118;clathrin coat;0.000496218333955486!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000506065998055428!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000527254205591974!GO:0015980;energy derivation by oxidation of organic compounds;0.000550675020245308!GO:0006839;mitochondrial transport;0.000563534778127982!GO:0016787;hydrolase activity;0.0006008018525504!GO:0016481;negative regulation of transcription;0.000627388198334224!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000640624907243429!GO:0042802;identical protein binding;0.000695311132336051!GO:0003684;damaged DNA binding;0.000696855383573835!GO:0016049;cell growth;0.000716289684821873!GO:0000323;lytic vacuole;0.000756122177753252!GO:0005764;lysosome;0.000756122177753252!GO:0005813;centrosome;0.000761479702314143!GO:0008250;oligosaccharyl transferase complex;0.000764315883110247!GO:0006402;mRNA catabolic process;0.000764334435756709!GO:0035257;nuclear hormone receptor binding;0.000793809547851096!GO:0030384;phosphoinositide metabolic process;0.00092222696218831!GO:0004004;ATP-dependent RNA helicase activity;0.000942788228100624!GO:0016363;nuclear matrix;0.000963603795725561!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000964648359004175!GO:0001558;regulation of cell growth;0.000968701430046426!GO:0005819;spindle;0.000997941659927099!GO:0006414;translational elongation;0.00105204214408992!GO:0030867;rough endoplasmic reticulum membrane;0.00106952022206372!GO:0003729;mRNA binding;0.00111337989608586!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0011314742874014!GO:0006350;transcription;0.0012429552084892!GO:0006401;RNA catabolic process;0.00124606627216383!GO:0051920;peroxiredoxin activity;0.00126616039868162!GO:0009165;nucleotide biosynthetic process;0.00143733681549676!GO:0005048;signal sequence binding;0.00148099016841974!GO:0031902;late endosome membrane;0.00148540924829017!GO:0030119;AP-type membrane coat adaptor complex;0.00149220176100402!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00153658267448661!GO:0030880;RNA polymerase complex;0.00154629114175202!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157472908563024!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157472908563024!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157472908563024!GO:0007243;protein kinase cascade;0.0016117325174189!GO:0030132;clathrin coat of coated pit;0.00162959349822761!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00163245898716531!GO:0016741;transferase activity, transferring one-carbon groups;0.00163245898716531!GO:0030131;clathrin adaptor complex;0.00164334811824511!GO:0043488;regulation of mRNA stability;0.00164459531854495!GO:0043487;regulation of RNA stability;0.00164459531854495!GO:0008637;apoptotic mitochondrial changes;0.00173062663690806!GO:0005684;U2-dependent spliceosome;0.0017371766007117!GO:0004576;oligosaccharyl transferase activity;0.00178013866985703!GO:0006383;transcription from RNA polymerase III promoter;0.00178300910617501!GO:0031968;organelle outer membrane;0.00178789289593936!GO:0005741;mitochondrial outer membrane;0.00179373586416981!GO:0008168;methyltransferase activity;0.00180938871463989!GO:0006506;GPI anchor biosynthetic process;0.00182472161622799!GO:0051252;regulation of RNA metabolic process;0.00182472161622799!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00189585500792191!GO:0005815;microtubule organizing center;0.00197704471750211!GO:0000049;tRNA binding;0.00198387671546931!GO:0007088;regulation of mitosis;0.00212576355664603!GO:0019867;outer membrane;0.00225903836708398!GO:0006612;protein targeting to membrane;0.00232004456614924!GO:0004518;nuclease activity;0.00234757629959878!GO:0006352;transcription initiation;0.00234895032969821!GO:0050790;regulation of catalytic activity;0.00235749702526082!GO:0005905;coated pit;0.00237564494314179!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0023965216044905!GO:0032561;guanyl ribonucleotide binding;0.00248557606784941!GO:0019001;guanyl nucleotide binding;0.00248557606784941!GO:0048487;beta-tubulin binding;0.00263311484016697!GO:0005657;replication fork;0.00263311484016697!GO:0046467;membrane lipid biosynthetic process;0.00271860493816738!GO:0030176;integral to endoplasmic reticulum membrane;0.00296360221774677!GO:0004527;exonuclease activity;0.00317027878976273!GO:0043065;positive regulation of apoptosis;0.00324606047322619!GO:0006505;GPI anchor metabolic process;0.00333648588278987!GO:0030659;cytoplasmic vesicle membrane;0.00336399645439019!GO:0000139;Golgi membrane;0.00344700845790412!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00366313037841291!GO:0000428;DNA-directed RNA polymerase complex;0.00366313037841291!GO:0005774;vacuolar membrane;0.00379862346305078!GO:0018196;peptidyl-asparagine modification;0.00395899098636889!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00395899098636889!GO:0005885;Arp2/3 protein complex;0.00400088527131109!GO:0010468;regulation of gene expression;0.00400139692431677!GO:0043068;positive regulation of programmed cell death;0.00401608196288394!GO:0003746;translation elongation factor activity;0.00405898847825296!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0040599260592561!GO:0045892;negative regulation of transcription, DNA-dependent;0.0040599260592561!GO:0040008;regulation of growth;0.00412934101953879!GO:0006520;amino acid metabolic process;0.00416579336843074!GO:0006818;hydrogen transport;0.00418451667780298!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00430348198929082!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00430348198929082!GO:0006405;RNA export from nucleus;0.0044780388128896!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0044780388128896!GO:0015399;primary active transmembrane transporter activity;0.0044780388128896!GO:0003711;transcription elongation regulator activity;0.0045065407152962!GO:0015992;proton transport;0.00451350528812836!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00454436091171493!GO:0030663;COPI coated vesicle membrane;0.00499932853165804!GO:0030126;COPI vesicle coat;0.00499932853165804!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00513614289155482!GO:0015002;heme-copper terminal oxidase activity;0.00513614289155482!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00513614289155482!GO:0004129;cytochrome-c oxidase activity;0.00513614289155482!GO:0016126;sterol biosynthetic process;0.00514763751963794!GO:0048471;perinuclear region of cytoplasm;0.00540572333119464!GO:0006289;nucleotide-excision repair;0.00549386852791915!GO:0051087;chaperone binding;0.0057741853740332!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00586954796793572!GO:0065007;biological regulation;0.00605001424964409!GO:0048518;positive regulation of biological process;0.00625623967703347!GO:0030133;transport vesicle;0.00625915626018159!GO:0051101;regulation of DNA binding;0.00632238168865711!GO:0008094;DNA-dependent ATPase activity;0.00633560287709532!GO:0031072;heat shock protein binding;0.00635417946440176!GO:0040029;regulation of gene expression, epigenetic;0.00635945153711853!GO:0000059;protein import into nucleus, docking;0.00647259290887266!GO:0007264;small GTPase mediated signal transduction;0.00652482324096617!GO:0001836;release of cytochrome c from mitochondria;0.00658426698519365!GO:0006497;protein amino acid lipidation;0.0070948260874781!GO:0030137;COPI-coated vesicle;0.00739769477440178!GO:0051338;regulation of transferase activity;0.00760383464727411!GO:0017166;vinculin binding;0.0076176888016888!GO:0008180;signalosome;0.0078991128231028!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00797766675694238!GO:0030057;desmosome;0.00799069718746802!GO:0006082;organic acid metabolic process;0.00817000055622399!GO:0000178;exosome (RNase complex);0.00831831937299039!GO:0016272;prefoldin complex;0.0083190994961791!GO:0044433;cytoplasmic vesicle part;0.00840358678043045!GO:0051098;regulation of binding;0.0084433817974587!GO:0006595;polyamine metabolic process;0.00848785561499826!GO:0005637;nuclear inner membrane;0.00861693902906089!GO:0004177;aminopeptidase activity;0.00864904801272054!GO:0019752;carboxylic acid metabolic process;0.00870608424845186!GO:0043284;biopolymer biosynthetic process;0.00874511264128318!GO:0003678;DNA helicase activity;0.00883434463510172!GO:0044437;vacuolar part;0.00903173587487422!GO:0030125;clathrin vesicle coat;0.00904481537529724!GO:0030665;clathrin coated vesicle membrane;0.00904481537529724!GO:0005791;rough endoplasmic reticulum;0.00911554901341784!GO:0008632;apoptotic program;0.00925260853583388!GO:0032508;DNA duplex unwinding;0.00959730440647256!GO:0032392;DNA geometric change;0.00959730440647256!GO:0030036;actin cytoskeleton organization and biogenesis;0.00972247187753707!GO:0006979;response to oxidative stress;0.0100079966148726!GO:0030503;regulation of cell redox homeostasis;0.0102899283680169!GO:0030658;transport vesicle membrane;0.010791499948994!GO:0007051;spindle organization and biogenesis;0.0109748202478216!GO:0032774;RNA biosynthetic process;0.0111540307314448!GO:0048468;cell development;0.0112060935395503!GO:0000082;G1/S transition of mitotic cell cycle;0.0112060935395503!GO:0006351;transcription, DNA-dependent;0.0117099409787725!GO:0015631;tubulin binding;0.0118887818792019!GO:0007010;cytoskeleton organization and biogenesis;0.0122420012633581!GO:0005765;lysosomal membrane;0.0125940304456409!GO:0009967;positive regulation of signal transduction;0.012778277912839!GO:0000775;chromosome, pericentric region;0.012778277912839!GO:0045936;negative regulation of phosphate metabolic process;0.0131445707452773!GO:0007040;lysosome organization and biogenesis;0.013188072398538!GO:0000030;mannosyltransferase activity;0.0132060136596093!GO:0000075;cell cycle checkpoint;0.0132599589409582!GO:0048500;signal recognition particle;0.0136690915161138!GO:0031124;mRNA 3'-end processing;0.0140277069608897!GO:0043549;regulation of kinase activity;0.0142157847015653!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0143121994232551!GO:0008610;lipid biosynthetic process;0.0146423592034584!GO:0046426;negative regulation of JAK-STAT cascade;0.0146423592034584!GO:0006891;intra-Golgi vesicle-mediated transport;0.014661563802238!GO:0046483;heterocycle metabolic process;0.0147514150513275!GO:0005832;chaperonin-containing T-complex;0.0152481057989782!GO:0003682;chromatin binding;0.015350982365236!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0154976635230177!GO:0003690;double-stranded DNA binding;0.0155091062948255!GO:0000209;protein polyubiquitination;0.0161039960434716!GO:0009451;RNA modification;0.0163494773205964!GO:0042158;lipoprotein biosynthetic process;0.0178079810047642!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0181114226970397!GO:0006268;DNA unwinding during replication;0.018292603466185!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.018312575490224!GO:0001726;ruffle;0.0184616593258861!GO:0005869;dynactin complex;0.0184616593258861!GO:0032981;mitochondrial respiratory chain complex I assembly;0.018529749468914!GO:0010257;NADH dehydrogenase complex assembly;0.018529749468914!GO:0033108;mitochondrial respiratory chain complex assembly;0.018529749468914!GO:0032507;maintenance of cellular protein localization;0.018529749468914!GO:0035258;steroid hormone receptor binding;0.0187590637446623!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0187590637446623!GO:0044262;cellular carbohydrate metabolic process;0.0192946222443573!GO:0008139;nuclear localization sequence binding;0.0193429657900863!GO:0030521;androgen receptor signaling pathway;0.019444483801099!GO:0016584;nucleosome positioning;0.0195049049057064!GO:0006695;cholesterol biosynthetic process;0.0197218677181512!GO:0030660;Golgi-associated vesicle membrane;0.0198877566727755!GO:0043022;ribosome binding;0.0200232338117253!GO:0006644;phospholipid metabolic process;0.0201194031939549!GO:0006354;RNA elongation;0.0202927316411718!GO:0008286;insulin receptor signaling pathway;0.0203525042011914!GO:0006376;mRNA splice site selection;0.020531255011507!GO:0000389;nuclear mRNA 3'-splice site recognition;0.020531255011507!GO:0016044;membrane organization and biogenesis;0.0211346327974076!GO:0007050;cell cycle arrest;0.0211733717047246!GO:0007265;Ras protein signal transduction;0.0213262272045599!GO:0006643;membrane lipid metabolic process;0.0214356392978753!GO:0006740;NADPH regeneration;0.0216871109266467!GO:0006098;pentose-phosphate shunt;0.0216871109266467!GO:0006611;protein export from nucleus;0.0218123673429553!GO:0008022;protein C-terminus binding;0.0220676700260511!GO:0006519;amino acid and derivative metabolic process;0.0221720319539702!GO:0022890;inorganic cation transmembrane transporter activity;0.0224143341545189!GO:0045859;regulation of protein kinase activity;0.0224244785995224!GO:0006284;base-excision repair;0.0224244785995224!GO:0012506;vesicle membrane;0.0224873462063778!GO:0008312;7S RNA binding;0.0227220415752407!GO:0006509;membrane protein ectodomain proteolysis;0.0228790320136447!GO:0033619;membrane protein proteolysis;0.0228790320136447!GO:0009303;rRNA transcription;0.0233478287648177!GO:0045941;positive regulation of transcription;0.0234426878428953!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0234714365976012!GO:0016251;general RNA polymerase II transcription factor activity;0.0235462856859224!GO:0016197;endosome transport;0.0236397097008456!GO:0022884;macromolecule transmembrane transporter activity;0.0241137733064381!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0241137733064381!GO:0048144;fibroblast proliferation;0.0242580620794353!GO:0048145;regulation of fibroblast proliferation;0.0242580620794353!GO:0006778;porphyrin metabolic process;0.0242758904050181!GO:0033013;tetrapyrrole metabolic process;0.0242758904050181!GO:0006917;induction of apoptosis;0.0244672170184556!GO:0008320;protein transmembrane transporter activity;0.0247380124632075!GO:0031529;ruffle organization and biogenesis;0.0252615228489904!GO:0030145;manganese ion binding;0.0256354640992871!GO:0004549;tRNA-specific ribonuclease activity;0.0257765879785683!GO:0016408;C-acyltransferase activity;0.0260102955220964!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.026089983371666!GO:0006338;chromatin remodeling;0.0270445657007701!GO:0007033;vacuole organization and biogenesis;0.0273213139221322!GO:0000096;sulfur amino acid metabolic process;0.0274905098678403!GO:0051651;maintenance of cellular localization;0.0280961588056331!GO:0043433;negative regulation of transcription factor activity;0.0282149076697261!GO:0008629;induction of apoptosis by intracellular signals;0.0285859920439826!GO:0006417;regulation of translation;0.0288098489078555!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0288098489078555!GO:0030029;actin filament-based process;0.0294209470716591!GO:0005669;transcription factor TFIID complex;0.0302778936592857!GO:0051287;NAD binding;0.0312289275046866!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0312289275046866!GO:0012502;induction of programmed cell death;0.0312289275046866!GO:0051059;NF-kappaB binding;0.0312289275046866!GO:0000123;histone acetyltransferase complex;0.0315868753320185!GO:0007021;tubulin folding;0.0321102104564223!GO:0004860;protein kinase inhibitor activity;0.0321218107605519!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.032407673812871!GO:0045047;protein targeting to ER;0.032407673812871!GO:0042326;negative regulation of phosphorylation;0.0324337910271451!GO:0045893;positive regulation of transcription, DNA-dependent;0.0325175079334196!GO:0005680;anaphase-promoting complex;0.0328321886203808!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0329585149490706!GO:0004526;ribonuclease P activity;0.0332987399938084!GO:0006779;porphyrin biosynthetic process;0.033646858995574!GO:0033014;tetrapyrrole biosynthetic process;0.033646858995574!GO:0009116;nucleoside metabolic process;0.0337384845317556!GO:0035035;histone acetyltransferase binding;0.0341243437441563!GO:0007034;vacuolar transport;0.0346847199324012!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0347641240365511!GO:0008538;proteasome activator activity;0.0347641240365511!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0347641240365511!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0347641240365511!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0347641240365511!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0349045609610574!GO:0048146;positive regulation of fibroblast proliferation;0.0355817370370093!GO:0006458;'de novo' protein folding;0.0356831477397771!GO:0051084;'de novo' posttranslational protein folding;0.0356831477397771!GO:0030911;TPR domain binding;0.0365690106897056!GO:0000152;nuclear ubiquitin ligase complex;0.0371309608394274!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0372869350383005!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0372869350383005!GO:0006302;double-strand break repair;0.0375019584988268!GO:0031543;peptidyl-proline dioxygenase activity;0.0375519446720809!GO:0030833;regulation of actin filament polymerization;0.0379121595158241!GO:0045806;negative regulation of endocytosis;0.0379563181936925!GO:0008270;zinc ion binding;0.0382872450142761!GO:0006378;mRNA polyadenylation;0.0382872450142761!GO:0051539;4 iron, 4 sulfur cluster binding;0.0383123898489031!GO:0042168;heme metabolic process;0.0390030591907552!GO:0006360;transcription from RNA polymerase I promoter;0.0391855583248366!GO:0045449;regulation of transcription;0.0392906406993048!GO:0043414;biopolymer methylation;0.0399327874227816!GO:0043492;ATPase activity, coupled to movement of substances;0.0400764070453688!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0400764070453688!GO:0030508;thiol-disulfide exchange intermediate activity;0.0400815593998148!GO:0046983;protein dimerization activity;0.0403621040408807!GO:0016407;acetyltransferase activity;0.0407363207392397!GO:0050811;GABA receptor binding;0.0408191237098387!GO:0006984;ER-nuclear signaling pathway;0.0410762436719949!GO:0006310;DNA recombination;0.0416822813792008!GO:0035267;NuA4 histone acetyltransferase complex;0.0417649605067838!GO:0030027;lamellipodium;0.0422988355947211!GO:0051716;cellular response to stimulus;0.0435544182544581!GO:0030433;ER-associated protein catabolic process;0.0436473703432057!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0436473703432057!GO:0051052;regulation of DNA metabolic process;0.0436716402861372!GO:0045334;clathrin-coated endocytic vesicle;0.0442089386198604!GO:0005758;mitochondrial intermembrane space;0.04454852284823!GO:0003923;GPI-anchor transamidase activity;0.04454852284823!GO:0016255;attachment of GPI anchor to protein;0.04454852284823!GO:0042765;GPI-anchor transamidase complex;0.04454852284823!GO:0008426;protein kinase C inhibitor activity;0.04454852284823!GO:0050662;coenzyme binding;0.04454852284823!GO:0033239;negative regulation of amine metabolic process;0.04454852284823!GO:0045763;negative regulation of amino acid metabolic process;0.04454852284823!GO:0001933;negative regulation of protein amino acid phosphorylation;0.04454852284823!GO:0007346;regulation of progression through mitotic cell cycle;0.044557452372908!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0446108562601827!GO:0030128;clathrin coat of endocytic vesicle;0.0449504019253366!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0449504019253366!GO:0030122;AP-2 adaptor complex;0.0449504019253366!GO:0043154;negative regulation of caspase activity;0.0453786230905258!GO:0051540;metal cluster binding;0.0453786230905258!GO:0051536;iron-sulfur cluster binding;0.0453786230905258!GO:0043189;H4/H2A histone acetyltransferase complex;0.0453786230905258!GO:0031272;regulation of pseudopodium formation;0.0453786230905258!GO:0031269;pseudopodium formation;0.0453786230905258!GO:0031344;regulation of cell projection organization and biogenesis;0.0453786230905258!GO:0031268;pseudopodium organization and biogenesis;0.0453786230905258!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0453786230905258!GO:0031274;positive regulation of pseudopodium formation;0.0453786230905258!GO:0030134;ER to Golgi transport vesicle;0.0453962372940901!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0458581329527942!GO:0019798;procollagen-proline dioxygenase activity;0.0471107984030128!GO:0004532;exoribonuclease activity;0.0471315010745335!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0471315010745335!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0471871966575884!GO:0009112;nucleobase metabolic process;0.0471871966575884!GO:0031625;ubiquitin protein ligase binding;0.0473251549474451!GO:0051881;regulation of mitochondrial membrane potential;0.0474506236808771!GO:0000086;G2/M transition of mitotic cell cycle;0.0476706434351386!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0480870995804764!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0483557649896561!GO:0046966;thyroid hormone receptor binding;0.0487509671634956!GO:0050220;prostaglandin-E synthase activity;0.0492641766772685!GO:0008144;drug binding;0.0496043272652419
+|sample_id=11278
+|sample_note=
+|sample_sex=unknown
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=placenta
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11278-116H9;search_select_hide=table117:FF:11278-116H9
 }}

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FF:11278-116H9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0