FF:11285-116I7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005986 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005986 | ||
|accession_numbers=CAGE;DRX008480;DRR009352;DRZ000777;DRZ002162;DRZ012127;DRZ013512 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037196;DRR041562;DRZ007204 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0005396,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002596 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000171 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor1.CNhs11087.11285-116I7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor1.CNhs11087.11285-116I7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor1.CNhs11087.11285-116I7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor1.CNhs11087.11285-116I7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor1.CNhs11087.11285-116I7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11285-116I7 | |id=FF:11285-116I7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000171 | ||
|is_obsolete= | |||
|library_id=CNhs11087 | |||
|library_id_phase_based=2:CNhs11087 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11285 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTAGAG.11285 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11285 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTAGAG.11285 | |||
|name=Smooth Muscle Cells - Carotid, donor1 | |name=Smooth Muscle Cells - Carotid, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11087,LSID724,release008,COMPLETED | |profile_hcage=CNhs11087,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116I7 | |rna_tube_id=116I7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GTAGAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.6155308991828e-207!GO:0005737;cytoplasm;1.69322121195961e-181!GO:0043231;intracellular membrane-bound organelle;6.49083446966895e-158!GO:0043227;membrane-bound organelle;1.54521070822701e-157!GO:0043226;organelle;8.38970288058871e-157!GO:0043229;intracellular organelle;1.36169022417753e-156!GO:0044444;cytoplasmic part;9.91856918400854e-132!GO:0044422;organelle part;2.21778916593406e-122!GO:0044446;intracellular organelle part;3.82236833709545e-121!GO:0032991;macromolecular complex;1.97126637576666e-83!GO:0005515;protein binding;5.09303185355162e-79!GO:0030529;ribonucleoprotein complex;2.41939119257548e-75!GO:0044238;primary metabolic process;5.72715592866825e-75!GO:0044237;cellular metabolic process;1.75683978348837e-74!GO:0043170;macromolecule metabolic process;4.40699532376215e-69!GO:0043233;organelle lumen;4.69375738338475e-64!GO:0031974;membrane-enclosed lumen;4.69375738338475e-64!GO:0005739;mitochondrion;1.75693863227397e-61!GO:0044428;nuclear part;5.19519268887689e-58!GO:0003723;RNA binding;2.66860226836525e-55!GO:0005634;nucleus;3.76556253150109e-52!GO:0019538;protein metabolic process;1.72875620366825e-49!GO:0005840;ribosome;5.00839917830671e-49!GO:0031090;organelle membrane;1.27387013068738e-48!GO:0006412;translation;4.23226780362697e-46!GO:0044260;cellular macromolecule metabolic process;1.01022758310789e-44!GO:0044267;cellular protein metabolic process;8.76284533734376e-44!GO:0003735;structural constituent of ribosome;1.05341981696872e-43!GO:0016043;cellular component organization and biogenesis;5.7087739140411e-43!GO:0015031;protein transport;1.74092133881687e-42!GO:0043234;protein complex;1.1525285010302e-41!GO:0033036;macromolecule localization;1.23324147817782e-40!GO:0044429;mitochondrial part;2.07315353073206e-40!GO:0005829;cytosol;1.32201704475556e-39!GO:0009058;biosynthetic process;3.33137753653892e-39!GO:0045184;establishment of protein localization;3.81752229756504e-39!GO:0009059;macromolecule biosynthetic process;3.85929665455114e-38!GO:0008104;protein localization;4.34110806853314e-38!GO:0033279;ribosomal subunit;7.53420045547558e-38!GO:0006396;RNA processing;1.03606819618515e-37!GO:0044249;cellular biosynthetic process;2.21462684132148e-37!GO:0031981;nuclear lumen;9.58408186999267e-37!GO:0031967;organelle envelope;4.55874647142005e-35!GO:0031975;envelope;1.04049203650532e-34!GO:0043283;biopolymer metabolic process;1.13493909910598e-34!GO:0046907;intracellular transport;1.6804899463475e-31!GO:0016071;mRNA metabolic process;5.00607316006865e-30!GO:0010467;gene expression;8.428972337952e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.78177863910862e-29!GO:0006886;intracellular protein transport;1.71308698220738e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.51915173688319e-27!GO:0065003;macromolecular complex assembly;8.46505404275411e-27!GO:0006996;organelle organization and biogenesis;1.69852392031504e-26!GO:0005740;mitochondrial envelope;3.02907810390696e-26!GO:0008380;RNA splicing;8.65636379955887e-26!GO:0006397;mRNA processing;3.61272066363468e-25!GO:0031966;mitochondrial membrane;8.1902942629037e-25!GO:0022607;cellular component assembly;1.10444174172952e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.25345756282089e-24!GO:0043228;non-membrane-bound organelle;5.94922857320531e-24!GO:0043232;intracellular non-membrane-bound organelle;5.94922857320531e-24!GO:0019866;organelle inner membrane;8.60600031579596e-24!GO:0044445;cytosolic part;1.03858337944309e-22!GO:0005654;nucleoplasm;1.77631852431918e-22!GO:0005743;mitochondrial inner membrane;2.95134035365786e-22!GO:0005783;endoplasmic reticulum;9.71338387624427e-21!GO:0006259;DNA metabolic process;1.00113242351874e-20!GO:0006119;oxidative phosphorylation;1.05485905581779e-20!GO:0012505;endomembrane system;2.85629432115479e-20!GO:0000166;nucleotide binding;1.02124364730725e-19!GO:0005681;spliceosome;1.07672712730232e-19!GO:0015935;small ribosomal subunit;1.43853550509332e-19!GO:0015934;large ribosomal subunit;2.6242145270432e-19!GO:0051641;cellular localization;4.61562487252335e-19!GO:0051649;establishment of cellular localization;4.82201439692227e-19!GO:0016462;pyrophosphatase activity;5.61824246440341e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.43157655626124e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;9.61153886026763e-19!GO:0044455;mitochondrial membrane part;1.33541619042599e-18!GO:0017111;nucleoside-triphosphatase activity;3.53230480368828e-18!GO:0044451;nucleoplasm part;3.77705838095676e-18!GO:0031980;mitochondrial lumen;1.33545250482011e-17!GO:0005759;mitochondrial matrix;1.33545250482011e-17!GO:0044432;endoplasmic reticulum part;1.52826979257395e-17!GO:0048770;pigment granule;3.10958121581218e-17!GO:0042470;melanosome;3.10958121581218e-17!GO:0008134;transcription factor binding;3.53019387556981e-17!GO:0006457;protein folding;3.72281728061383e-17!GO:0005794;Golgi apparatus;4.52318187085909e-17!GO:0016874;ligase activity;3.92086569732393e-16!GO:0005746;mitochondrial respiratory chain;3.93100202851457e-16!GO:0007049;cell cycle;7.37193228803181e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.16766253428895e-15!GO:0005730;nucleolus;1.90144609569318e-15!GO:0051186;cofactor metabolic process;2.30445019481656e-15!GO:0006605;protein targeting;2.54628756807561e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.23620162881529e-15!GO:0017076;purine nucleotide binding;9.99482666366269e-15!GO:0032553;ribonucleotide binding;1.11552613754546e-14!GO:0032555;purine ribonucleotide binding;1.11552613754546e-14!GO:0044265;cellular macromolecule catabolic process;1.12578911909433e-14!GO:0006512;ubiquitin cycle;1.28584633815141e-14!GO:0022618;protein-RNA complex assembly;1.41422286241821e-14!GO:0043285;biopolymer catabolic process;2.14017424365745e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.14017424365745e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.84777276822534e-14!GO:0009057;macromolecule catabolic process;7.28481762507341e-14!GO:0050136;NADH dehydrogenase (quinone) activity;8.63345416649463e-14!GO:0003954;NADH dehydrogenase activity;8.63345416649463e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.63345416649463e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.44986668381681e-13!GO:0048193;Golgi vesicle transport;1.50502412394206e-13!GO:0044248;cellular catabolic process;1.67779621080763e-13!GO:0019941;modification-dependent protein catabolic process;2.89280450192748e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.89280450192748e-13!GO:0003676;nucleic acid binding;3.22480261642633e-13!GO:0044257;cellular protein catabolic process;4.54942527794847e-13!GO:0008135;translation factor activity, nucleic acid binding;5.05973583743968e-13!GO:0006511;ubiquitin-dependent protein catabolic process;5.41120628758002e-13!GO:0043412;biopolymer modification;5.58918768347829e-13!GO:0005524;ATP binding;9.52807924857439e-13!GO:0051082;unfolded protein binding;1.07183593355171e-12!GO:0016192;vesicle-mediated transport;1.68828406213684e-12!GO:0030163;protein catabolic process;2.27827936111701e-12!GO:0005761;mitochondrial ribosome;2.91337670420295e-12!GO:0000313;organellar ribosome;2.91337670420295e-12!GO:0032559;adenyl ribonucleotide binding;2.95416528725437e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.25338471300633e-12!GO:0042773;ATP synthesis coupled electron transport;3.25338471300633e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.45431585311218e-12!GO:0045271;respiratory chain complex I;3.45431585311218e-12!GO:0005747;mitochondrial respiratory chain complex I;3.45431585311218e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.59931361641543e-12!GO:0030554;adenyl nucleotide binding;3.63121911769504e-12!GO:0005793;ER-Golgi intermediate compartment;5.14970553676585e-12!GO:0006732;coenzyme metabolic process;7.59086727258633e-12!GO:0022402;cell cycle process;8.13843947854094e-12!GO:0006464;protein modification process;8.38509700663995e-12!GO:0005789;endoplasmic reticulum membrane;9.18162645703387e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.15746026127397e-11!GO:0003712;transcription cofactor activity;1.20260783801605e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.78001876219977e-11!GO:0016070;RNA metabolic process;5.80722769472525e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;7.32395591111944e-11!GO:0000375;RNA splicing, via transesterification reactions;7.32395591111944e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.32395591111944e-11!GO:0000278;mitotic cell cycle;7.55083621970112e-11!GO:0042254;ribosome biogenesis and assembly;1.56824581955885e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.94615454532535e-10!GO:0006913;nucleocytoplasmic transport;2.60779964639619e-10!GO:0051276;chromosome organization and biogenesis;5.76920639240773e-10!GO:0051169;nuclear transport;6.71234021854753e-10!GO:0006163;purine nucleotide metabolic process;7.30609425777236e-10!GO:0006323;DNA packaging;8.68498401720701e-10!GO:0003743;translation initiation factor activity;8.68498401720701e-10!GO:0043687;post-translational protein modification;8.68498401720701e-10!GO:0016887;ATPase activity;9.05502799424174e-10!GO:0009259;ribonucleotide metabolic process;9.89396461456564e-10!GO:0005635;nuclear envelope;1.06641064722023e-09!GO:0048523;negative regulation of cellular process;1.17505680470887e-09!GO:0009055;electron carrier activity;1.77211157741286e-09!GO:0009150;purine ribonucleotide metabolic process;2.20130435719368e-09!GO:0012501;programmed cell death;2.82595881098904e-09!GO:0042623;ATPase activity, coupled;3.25911476776817e-09!GO:0031965;nuclear membrane;3.58541454965432e-09!GO:0006164;purine nucleotide biosynthetic process;3.75836002843195e-09!GO:0006413;translational initiation;3.86276197415329e-09!GO:0006974;response to DNA damage stimulus;3.87612276257725e-09!GO:0016491;oxidoreductase activity;5.78734858802001e-09!GO:0006915;apoptosis;5.9146542586072e-09!GO:0016604;nuclear body;6.12320959821413e-09!GO:0017038;protein import;7.21612000159575e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.41517582983119e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.98299151581864e-09!GO:0006399;tRNA metabolic process;7.98299151581864e-09!GO:0044453;nuclear membrane part;1.00878135483596e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.10174836883637e-08!GO:0030120;vesicle coat;1.1891362349746e-08!GO:0030662;coated vesicle membrane;1.1891362349746e-08!GO:0009260;ribonucleotide biosynthetic process;1.47655993388792e-08!GO:0006446;regulation of translational initiation;1.56969019429754e-08!GO:0065004;protein-DNA complex assembly;1.65176915581674e-08!GO:0005788;endoplasmic reticulum lumen;1.67019610804178e-08!GO:0008219;cell death;1.98262377637075e-08!GO:0016265;death;1.98262377637075e-08!GO:0008639;small protein conjugating enzyme activity;2.05017163776431e-08!GO:0009060;aerobic respiration;2.559669943593e-08!GO:0009056;catabolic process;2.77090561143004e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.19669864829452e-08!GO:0048519;negative regulation of biological process;4.1449089334658e-08!GO:0004842;ubiquitin-protein ligase activity;4.23021504856309e-08!GO:0006366;transcription from RNA polymerase II promoter;4.32024991408918e-08!GO:0051726;regulation of cell cycle;4.46913917358234e-08!GO:0008565;protein transporter activity;4.53872539867893e-08!GO:0044431;Golgi apparatus part;4.6868298683693e-08!GO:0048475;coated membrane;5.20091550490916e-08!GO:0030117;membrane coat;5.20091550490916e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.5869049526055e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.28587638888092e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.68011320340072e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.68011320340072e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.68011320340072e-08!GO:0045333;cellular respiration;7.5341017416527e-08!GO:0000074;regulation of progression through cell cycle;7.67442871513419e-08!GO:0015986;ATP synthesis coupled proton transport;8.22632523594013e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.22632523594013e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.395432295737e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.395432295737e-08!GO:0009141;nucleoside triphosphate metabolic process;9.11890434761621e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.7024944155913e-08!GO:0009719;response to endogenous stimulus;9.7024944155913e-08!GO:0019787;small conjugating protein ligase activity;1.10331549855503e-07!GO:0005694;chromosome;1.18470876348122e-07!GO:0043038;amino acid activation;1.61537735121035e-07!GO:0006418;tRNA aminoacylation for protein translation;1.61537735121035e-07!GO:0043039;tRNA aminoacylation;1.61537735121035e-07!GO:0051188;cofactor biosynthetic process;1.7246792372363e-07!GO:0006333;chromatin assembly or disassembly;1.73072330407619e-07!GO:0016740;transferase activity;1.74772531577984e-07!GO:0006260;DNA replication;2.089591965194e-07!GO:0009117;nucleotide metabolic process;2.23050580794882e-07!GO:0046034;ATP metabolic process;2.33834334946876e-07!GO:0004386;helicase activity;2.61321633478566e-07!GO:0006281;DNA repair;2.78956402142531e-07!GO:0003924;GTPase activity;2.89615659743003e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.16761593207503e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.16761593207503e-07!GO:0016881;acid-amino acid ligase activity;4.25782195869303e-07!GO:0019829;cation-transporting ATPase activity;4.35697732711136e-07!GO:0006364;rRNA processing;4.37204162934392e-07!GO:0005768;endosome;4.74130115616603e-07!GO:0006461;protein complex assembly;4.93379902354247e-07!GO:0044427;chromosomal part;6.1016901799378e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.33230433290926e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.33230433290926e-07!GO:0008026;ATP-dependent helicase activity;7.09869260720179e-07!GO:0065002;intracellular protein transport across a membrane;7.43903427313214e-07!GO:0005643;nuclear pore;7.70229738445741e-07!GO:0016607;nuclear speck;8.54159179497317e-07!GO:0007067;mitosis;8.65855091019938e-07!GO:0016072;rRNA metabolic process;8.66620212512087e-07!GO:0000087;M phase of mitotic cell cycle;8.89761846479603e-07!GO:0006334;nucleosome assembly;9.07020300191329e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.83814724539933e-07!GO:0051187;cofactor catabolic process;1.0384776937066e-06!GO:0050794;regulation of cellular process;1.08500912309093e-06!GO:0042981;regulation of apoptosis;1.12888473786308e-06!GO:0031497;chromatin assembly;1.13618595265161e-06!GO:0043067;regulation of programmed cell death;1.15976287843562e-06!GO:0006099;tricarboxylic acid cycle;1.2497947474814e-06!GO:0046356;acetyl-CoA catabolic process;1.2497947474814e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.2497947474814e-06!GO:0022403;cell cycle phase;1.3593081064645e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.41216913890421e-06!GO:0006754;ATP biosynthetic process;1.52458967377455e-06!GO:0006753;nucleoside phosphate metabolic process;1.52458967377455e-06!GO:0051246;regulation of protein metabolic process;1.55294846859999e-06!GO:0016563;transcription activator activity;1.58693757067781e-06!GO:0044440;endosomal part;1.61737775974485e-06!GO:0010008;endosome membrane;1.61737775974485e-06!GO:0000785;chromatin;1.68540760568958e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.83143309110016e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.88942865934035e-06!GO:0016787;hydrolase activity;1.94836619385306e-06!GO:0003713;transcription coactivator activity;2.11254454024964e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.28194513013312e-06!GO:0006793;phosphorus metabolic process;2.38663610805617e-06!GO:0006796;phosphate metabolic process;2.38663610805617e-06!GO:0031988;membrane-bound vesicle;2.72400682316461e-06!GO:0031252;leading edge;2.90802574136859e-06!GO:0005798;Golgi-associated vesicle;2.93326770524552e-06!GO:0009109;coenzyme catabolic process;2.9430598941331e-06!GO:0006084;acetyl-CoA metabolic process;3.51596475065009e-06!GO:0043069;negative regulation of programmed cell death;3.82289005329238e-06!GO:0016568;chromatin modification;3.86816168182231e-06!GO:0016310;phosphorylation;4.11056697920892e-06!GO:0051170;nuclear import;4.35134800234661e-06!GO:0005667;transcription factor complex;4.93914978563194e-06!GO:0000139;Golgi membrane;5.33240660249007e-06!GO:0043066;negative regulation of apoptosis;5.36849411427059e-06!GO:0031324;negative regulation of cellular metabolic process;5.45182439185354e-06!GO:0046930;pore complex;5.80005777829161e-06!GO:0006606;protein import into nucleus;5.84117203675408e-06!GO:0009108;coenzyme biosynthetic process;6.53620037075626e-06!GO:0001558;regulation of cell growth;6.57740345750937e-06!GO:0008361;regulation of cell size;6.57740345750937e-06!GO:0003714;transcription corepressor activity;6.88438542506113e-06!GO:0006916;anti-apoptosis;6.90748009523974e-06!GO:0016049;cell growth;6.92292471099492e-06!GO:0003697;single-stranded DNA binding;7.0655656460953e-06!GO:0045259;proton-transporting ATP synthase complex;7.36971911586353e-06!GO:0043566;structure-specific DNA binding;7.48845244642336e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.60387107410632e-06!GO:0045786;negative regulation of progression through cell cycle;8.30573232627138e-06!GO:0005773;vacuole;9.21170780058295e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.0436930244467e-05!GO:0016564;transcription repressor activity;1.07030412103953e-05!GO:0004298;threonine endopeptidase activity;1.16859879225935e-05!GO:0051301;cell division;1.30224656598326e-05!GO:0000151;ubiquitin ligase complex;1.31424244273128e-05!GO:0005905;coated pit;1.32697971614439e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.41658237423576e-05!GO:0048522;positive regulation of cellular process;1.48550167960102e-05!GO:0031410;cytoplasmic vesicle;1.51162798883333e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.54292851588316e-05!GO:0031982;vesicle;1.60898206792768e-05!GO:0006752;group transfer coenzyme metabolic process;2.26877784412275e-05!GO:0006091;generation of precursor metabolites and energy;2.28997072428214e-05!GO:0006403;RNA localization;2.3571444571956e-05!GO:0016779;nucleotidyltransferase activity;2.3844582543343e-05!GO:0050657;nucleic acid transport;2.53608193230967e-05!GO:0051236;establishment of RNA localization;2.53608193230967e-05!GO:0050658;RNA transport;2.53608193230967e-05!GO:0000245;spliceosome assembly;2.90692554764027e-05!GO:0019843;rRNA binding;3.21093207541239e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.24369145568297e-05!GO:0030867;rough endoplasmic reticulum membrane;3.50211837936559e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.99419965986331e-05!GO:0015630;microtubule cytoskeleton;4.67943694338246e-05!GO:0016567;protein ubiquitination;4.67943694338246e-05!GO:0032446;protein modification by small protein conjugation;4.68329664005044e-05!GO:0005048;signal sequence binding;4.9153211354957e-05!GO:0005770;late endosome;5.13266701641284e-05!GO:0005762;mitochondrial large ribosomal subunit;5.29322674098457e-05!GO:0000315;organellar large ribosomal subunit;5.29322674098457e-05!GO:0000323;lytic vacuole;5.35785893813352e-05!GO:0005764;lysosome;5.35785893813352e-05!GO:0009892;negative regulation of metabolic process;5.4171347791585e-05!GO:0006613;cotranslational protein targeting to membrane;6.35282656572496e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.62126709234061e-05!GO:0003724;RNA helicase activity;7.32673661656986e-05!GO:0008654;phospholipid biosynthetic process;7.42739828288566e-05!GO:0007005;mitochondrion organization and biogenesis;7.8683580207221e-05!GO:0016853;isomerase activity;8.0309820743111e-05!GO:0005525;GTP binding;8.11664267444806e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000115978307030414!GO:0033116;ER-Golgi intermediate compartment membrane;0.000122425612691157!GO:0051789;response to protein stimulus;0.00012316514711216!GO:0006986;response to unfolded protein;0.00012316514711216!GO:0000786;nucleosome;0.000132787167526118!GO:0045454;cell redox homeostasis;0.000140389690705804!GO:0051329;interphase of mitotic cell cycle;0.000144424225308135!GO:0031968;organelle outer membrane;0.000147130746796438!GO:0005769;early endosome;0.000168190530178122!GO:0019867;outer membrane;0.000177371017276044!GO:0019899;enzyme binding;0.000192352185716978!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000207266436906257!GO:0050789;regulation of biological process;0.000235288794591854!GO:0000279;M phase;0.000246254568804531!GO:0030133;transport vesicle;0.000277599103708254!GO:0030663;COPI coated vesicle membrane;0.000302507072348759!GO:0030126;COPI vesicle coat;0.000302507072348759!GO:0030029;actin filament-based process;0.000304564818389664!GO:0051427;hormone receptor binding;0.000311141774859261!GO:0032561;guanyl ribonucleotide binding;0.000318867030811051!GO:0019001;guanyl nucleotide binding;0.000318867030811051!GO:0009165;nucleotide biosynthetic process;0.000347489239796504!GO:0016481;negative regulation of transcription;0.000347489239796504!GO:0005813;centrosome;0.000358973668255221!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000367826794690137!GO:0006414;translational elongation;0.000371321468448315!GO:0044262;cellular carbohydrate metabolic process;0.000408483910381839!GO:0043284;biopolymer biosynthetic process;0.000417273202537771!GO:0040008;regulation of growth;0.000417747425118103!GO:0016859;cis-trans isomerase activity;0.000419097827124718!GO:0008250;oligosaccharyl transferase complex;0.00046014610013675!GO:0005741;mitochondrial outer membrane;0.000471375733495282!GO:0006612;protein targeting to membrane;0.000476523763011553!GO:0051028;mRNA transport;0.000522280584316479!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000537810292400012!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000537870124143068!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000543876752323628!GO:0030137;COPI-coated vesicle;0.000557857570548526!GO:0005815;microtubule organizing center;0.000570007027608457!GO:0007264;small GTPase mediated signal transduction;0.000608693852707825!GO:0035257;nuclear hormone receptor binding;0.000625323303865448!GO:0043623;cellular protein complex assembly;0.000646205799127787!GO:0004576;oligosaccharyl transferase activity;0.000649332867641733!GO:0051325;interphase;0.000657564695365876!GO:0005885;Arp2/3 protein complex;0.000697682099922753!GO:0003899;DNA-directed RNA polymerase activity;0.000712489936694909!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000716135044123241!GO:0046474;glycerophospholipid biosynthetic process;0.000721434167776213!GO:0045941;positive regulation of transcription;0.00073838846212946!GO:0008186;RNA-dependent ATPase activity;0.00074855099209445!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000749134738504729!GO:0043021;ribonucleoprotein binding;0.000773911767020094!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000822133843281137!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000842347451673036!GO:0051920;peroxiredoxin activity;0.000918018126916652!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000935762640328032!GO:0030132;clathrin coat of coated pit;0.000969441173697711!GO:0048518;positive regulation of biological process;0.0010886357806986!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00114780007773357!GO:0030176;integral to endoplasmic reticulum membrane;0.00131080127301628!GO:0000314;organellar small ribosomal subunit;0.00131080127301628!GO:0005763;mitochondrial small ribosomal subunit;0.00131080127301628!GO:0065009;regulation of a molecular function;0.00135553654117033!GO:0030027;lamellipodium;0.00141088233396836!GO:0007243;protein kinase cascade;0.00147347229186671!GO:0051168;nuclear export;0.00151410805899859!GO:0043681;protein import into mitochondrion;0.00158454288873782!GO:0030118;clathrin coat;0.00167933049659754!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00175415144032855!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00191993994459278!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00191993994459278!GO:0004004;ATP-dependent RNA helicase activity;0.00192351619569233!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00196007628652302!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00196007628652302!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00196007628652302!GO:0030658;transport vesicle membrane;0.00201384988215068!GO:0018196;peptidyl-asparagine modification;0.00210339532006947!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00210339532006947!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0021342459496938!GO:0015399;primary active transmembrane transporter activity;0.0021342459496938!GO:0006082;organic acid metabolic process;0.0022286318803116!GO:0005819;spindle;0.00242761856889833!GO:0019752;carboxylic acid metabolic process;0.00244507525030264!GO:0030134;ER to Golgi transport vesicle;0.00251962243258939!GO:0045893;positive regulation of transcription, DNA-dependent;0.00253367853478054!GO:0046489;phosphoinositide biosynthetic process;0.00253367853478054!GO:0005791;rough endoplasmic reticulum;0.00257328162483891!GO:0008047;enzyme activator activity;0.00261574012099268!GO:0007050;cell cycle arrest;0.00271756851757948!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00276750605147961!GO:0016044;membrane organization and biogenesis;0.00278949054651782!GO:0007010;cytoskeleton organization and biogenesis;0.00279530766921179!GO:0051252;regulation of RNA metabolic process;0.00281477414753321!GO:0006891;intra-Golgi vesicle-mediated transport;0.00299460693658296!GO:0030659;cytoplasmic vesicle membrane;0.00307790271157308!GO:0046483;heterocycle metabolic process;0.00314176896895826!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00336511170123061!GO:0004177;aminopeptidase activity;0.00342982934733855!GO:0045792;negative regulation of cell size;0.00348366231355461!GO:0017166;vinculin binding;0.00381152860735451!GO:0048487;beta-tubulin binding;0.00389867598749685!GO:0030308;negative regulation of cell growth;0.00413110732222562!GO:0003729;mRNA binding;0.00420988275424191!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00421969950346173!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00426718931903846!GO:0007006;mitochondrial membrane organization and biogenesis;0.00433367387865872!GO:0004674;protein serine/threonine kinase activity;0.0043688968431494!GO:0006950;response to stress;0.00459953547215879!GO:0030127;COPII vesicle coat;0.00471483102282827!GO:0012507;ER to Golgi transport vesicle membrane;0.00471483102282827!GO:0008243;plasminogen activator activity;0.00472956912468303!GO:0006740;NADPH regeneration;0.00480304906412547!GO:0006098;pentose-phosphate shunt;0.00480304906412547!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00481690813231379!GO:0043488;regulation of mRNA stability;0.00491138208208873!GO:0043487;regulation of RNA stability;0.00491138208208873!GO:0006626;protein targeting to mitochondrion;0.00504350089643522!GO:0006509;membrane protein ectodomain proteolysis;0.00508397702845067!GO:0033619;membrane protein proteolysis;0.00508397702845067!GO:0050662;coenzyme binding;0.00516512968831433!GO:0015631;tubulin binding;0.00534382645334413!GO:0003746;translation elongation factor activity;0.00556139975266055!GO:0030660;Golgi-associated vesicle membrane;0.0056932291384503!GO:0030041;actin filament polymerization;0.00569575890192431!GO:0008033;tRNA processing;0.00584505965954593!GO:0008139;nuclear localization sequence binding;0.00603390302486908!GO:0008154;actin polymerization and/or depolymerization;0.00607696722416805!GO:0006261;DNA-dependent DNA replication;0.00632811674507275!GO:0016363;nuclear matrix;0.00646109124479759!GO:0006595;polyamine metabolic process;0.00663058427483806!GO:0044433;cytoplasmic vesicle part;0.0071688156550076!GO:0006497;protein amino acid lipidation;0.00734168691876546!GO:0005096;GTPase activator activity;0.00740937949360977!GO:0030521;androgen receptor signaling pathway;0.00758454484922449!GO:0031072;heat shock protein binding;0.00758454484922449!GO:0008092;cytoskeletal protein binding;0.00758454484922449!GO:0009112;nucleobase metabolic process;0.00791272454106067!GO:0031418;L-ascorbic acid binding;0.00799134962880143!GO:0031543;peptidyl-proline dioxygenase activity;0.00807253016067722!GO:0006402;mRNA catabolic process;0.00817614824895076!GO:0046467;membrane lipid biosynthetic process;0.0083787963535355!GO:0043492;ATPase activity, coupled to movement of substances;0.00864943779100375!GO:0008632;apoptotic program;0.00882877778230274!GO:0030119;AP-type membrane coat adaptor complex;0.00888421237614744!GO:0022408;negative regulation of cell-cell adhesion;0.00894443747200558!GO:0000049;tRNA binding;0.00895256493770164!GO:0006979;response to oxidative stress;0.00895493174645689!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00907929205236118!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00908391379805244!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00908391379805244!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00910427521482604!GO:0000082;G1/S transition of mitotic cell cycle;0.00922617979235343!GO:0001953;negative regulation of cell-matrix adhesion;0.00923443291100251!GO:0051539;4 iron, 4 sulfur cluster binding;0.0092736166302743!GO:0042802;identical protein binding;0.00967836562918575!GO:0048500;signal recognition particle;0.0097083182074385!GO:0003711;transcription elongation regulator activity;0.00998392027842626!GO:0048471;perinuclear region of cytoplasm;0.00998392027842626!GO:0003690;double-stranded DNA binding;0.0100644473713369!GO:0065007;biological regulation;0.0100985272728124!GO:0006520;amino acid metabolic process;0.0102431381213914!GO:0030125;clathrin vesicle coat;0.0103680416683861!GO:0030665;clathrin coated vesicle membrane;0.0103680416683861!GO:0044452;nucleolar part;0.0106005077786802!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0107118728086998!GO:0006007;glucose catabolic process;0.0109010517884096!GO:0051087;chaperone binding;0.0109692979146831!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0109692979146831!GO:0005869;dynactin complex;0.0109841138751921!GO:0009967;positive regulation of signal transduction;0.0112326349960864!GO:0008180;signalosome;0.0114717652598329!GO:0030131;clathrin adaptor complex;0.0120483518752547!GO:0045892;negative regulation of transcription, DNA-dependent;0.0120560182621086!GO:0030145;manganese ion binding;0.0121096979578912!GO:0030880;RNA polymerase complex;0.0122950742798033!GO:0006401;RNA catabolic process;0.0123036896323561!GO:0001726;ruffle;0.0123838623471119!GO:0042158;lipoprotein biosynthetic process;0.0124079287486984!GO:0005657;replication fork;0.0124918000150934!GO:0000059;protein import into nucleus, docking;0.0125259119894028!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0125962677557166!GO:0015002;heme-copper terminal oxidase activity;0.0125962677557166!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0125962677557166!GO:0004129;cytochrome-c oxidase activity;0.0125962677557166!GO:0016301;kinase activity;0.0126058817832596!GO:0006289;nucleotide-excision repair;0.0127201641278178!GO:0003684;damaged DNA binding;0.0128411578665453!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0130991990678893!GO:0006352;transcription initiation;0.0132636638966999!GO:0007040;lysosome organization and biogenesis;0.0142916974212181!GO:0015992;proton transport;0.0145389772844331!GO:0003678;DNA helicase activity;0.0146278076472385!GO:0043433;negative regulation of transcription factor activity;0.0146741187158327!GO:0031124;mRNA 3'-end processing;0.0146741187158327!GO:0019798;procollagen-proline dioxygenase activity;0.0148697583013519!GO:0051287;NAD binding;0.0150517173006891!GO:0006778;porphyrin metabolic process;0.0150517173006891!GO:0033013;tetrapyrrole metabolic process;0.0150517173006891!GO:0005862;muscle thin filament tropomyosin;0.0150742685906089!GO:0006383;transcription from RNA polymerase III promoter;0.0153830798954439!GO:0031902;late endosome membrane;0.0156897985883753!GO:0005684;U2-dependent spliceosome;0.0156897985883753!GO:0045926;negative regulation of growth;0.016033664793608!GO:0006650;glycerophospholipid metabolic process;0.0164242050318484!GO:0006818;hydrogen transport;0.0164679098238375!GO:0031272;regulation of pseudopodium formation;0.0165307500328212!GO:0031269;pseudopodium formation;0.0165307500328212!GO:0031344;regulation of cell projection organization and biogenesis;0.0165307500328212!GO:0031268;pseudopodium organization and biogenesis;0.0165307500328212!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0165307500328212!GO:0031274;positive regulation of pseudopodium formation;0.0165307500328212!GO:0005774;vacuolar membrane;0.017038628886015!GO:0031901;early endosome membrane;0.0170723159207815!GO:0051059;NF-kappaB binding;0.0176315095309861!GO:0006611;protein export from nucleus;0.0177366896200596!GO:0031625;ubiquitin protein ligase binding;0.0177580078879242!GO:0019206;nucleoside kinase activity;0.0177978482130335!GO:0035035;histone acetyltransferase binding;0.0179213351613966!GO:0033673;negative regulation of kinase activity;0.0179213351613966!GO:0006469;negative regulation of protein kinase activity;0.0179213351613966!GO:0042168;heme metabolic process;0.0179616234393604!GO:0008610;lipid biosynthetic process;0.017987960276571!GO:0012506;vesicle membrane;0.0180637954745091!GO:0045045;secretory pathway;0.0181365708563858!GO:0006354;RNA elongation;0.0182174442998786!GO:0031529;ruffle organization and biogenesis;0.0186939160398537!GO:0007033;vacuole organization and biogenesis;0.0186939160398537!GO:0008094;DNA-dependent ATPase activity;0.0187350079971962!GO:0005832;chaperonin-containing T-complex;0.0188664593674824!GO:0035258;steroid hormone receptor binding;0.0189524871475099!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0191043709708048!GO:0000096;sulfur amino acid metabolic process;0.0196113024349399!GO:0008312;7S RNA binding;0.0197554696752616!GO:0007265;Ras protein signal transduction;0.0201936534047378!GO:0006607;NLS-bearing substrate import into nucleus;0.0204065334221064!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0207474190661989!GO:0045047;protein targeting to ER;0.0207474190661989!GO:0051101;regulation of DNA binding;0.0208361005802813!GO:0007051;spindle organization and biogenesis;0.021052293017862!GO:0005637;nuclear inner membrane;0.0214078037421944!GO:0051128;regulation of cellular component organization and biogenesis;0.0227934654191775!GO:0006118;electron transport;0.0230107269654977!GO:0016408;C-acyltransferase activity;0.0235411583912474!GO:0032507;maintenance of cellular protein localization;0.0236582381154619!GO:0043022;ribosome binding;0.0236702264547753!GO:0022890;inorganic cation transmembrane transporter activity;0.0238340914586751!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0238378915138708!GO:0006506;GPI anchor biosynthetic process;0.0238858061456671!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0238858061456671!GO:0000428;DNA-directed RNA polymerase complex;0.0238858061456671!GO:0022415;viral reproductive process;0.0240197066593414!GO:0051348;negative regulation of transferase activity;0.0243986840412512!GO:0048468;cell development;0.0245518236566837!GO:0006338;chromatin remodeling;0.0251753258953127!GO:0048037;cofactor binding;0.0252023307835724!GO:0031301;integral to organelle membrane;0.0255379411364647!GO:0009303;rRNA transcription;0.0257806501817722!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0264202628324829!GO:0051540;metal cluster binding;0.0264957743662603!GO:0051536;iron-sulfur cluster binding;0.0264957743662603!GO:0006897;endocytosis;0.0269146121333405!GO:0010324;membrane invagination;0.0269146121333405!GO:0008538;proteasome activator activity;0.0271781381941506!GO:0019222;regulation of metabolic process;0.0272090769179238!GO:0016741;transferase activity, transferring one-carbon groups;0.0272434557595844!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0273459385012732!GO:0004784;superoxide dismutase activity;0.0273459385012732!GO:0006405;RNA export from nucleus;0.0276709531762288!GO:0030384;phosphoinositide metabolic process;0.0278036813864161!GO:0006839;mitochondrial transport;0.0283250146372671!GO:0008168;methyltransferase activity;0.028862412938514!GO:0003756;protein disulfide isomerase activity;0.0295986403565691!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0295986403565691!GO:0050790;regulation of catalytic activity;0.0297793458022653!GO:0005874;microtubule;0.0298583207663032!GO:0006505;GPI anchor metabolic process;0.0299950053682437!GO:0001872;zymosan binding;0.0307756027539418!GO:0001878;response to yeast;0.0307756027539418!GO:0006376;mRNA splice site selection;0.0309404283659816!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0309404283659816!GO:0000030;mannosyltransferase activity;0.0317384189065802!GO:0003682;chromatin binding;0.0317384189065802!GO:0045334;clathrin-coated endocytic vesicle;0.0318286385816364!GO:0008022;protein C-terminus binding;0.0318360127506447!GO:0001952;regulation of cell-matrix adhesion;0.0318360127506447!GO:0030032;lamellipodium biogenesis;0.0318803851553649!GO:0006892;post-Golgi vesicle-mediated transport;0.0321484523581744!GO:0016584;nucleosome positioning;0.032181654670919!GO:0030128;clathrin coat of endocytic vesicle;0.0322800659021281!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0322800659021281!GO:0030122;AP-2 adaptor complex;0.0322800659021281!GO:0006739;NADP metabolic process;0.0325129832993563!GO:0005586;collagen type III;0.03251440292735!GO:0051098;regulation of binding;0.03251440292735!GO:0008652;amino acid biosynthetic process;0.0327965433827108!GO:0007021;tubulin folding;0.03303672309726!GO:0016197;endosome transport;0.0331428378544801!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0334729472057283!GO:0030433;ER-associated protein catabolic process;0.0342875975726159!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0342875975726159!GO:0008629;induction of apoptosis by intracellular signals;0.0343452948457569!GO:0044437;vacuolar part;0.0348152886583021!GO:0006378;mRNA polyadenylation;0.0351706803177419!GO:0019318;hexose metabolic process;0.0352812047865047!GO:0030518;steroid hormone receptor signaling pathway;0.0362265450788062!GO:0043407;negative regulation of MAP kinase activity;0.0364374960381822!GO:0006635;fatty acid beta-oxidation;0.0366091829153492!GO:0000084;S phase of mitotic cell cycle;0.0371355580930987!GO:0048144;fibroblast proliferation;0.037695793561829!GO:0048145;regulation of fibroblast proliferation;0.037695793561829!GO:0043189;H4/H2A histone acetyltransferase complex;0.0381715321123967!GO:0050811;GABA receptor binding;0.0382503287609345!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0382503287609345!GO:0001527;microfibril;0.0382503287609345!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0384850577113033!GO:0001666;response to hypoxia;0.0386780743167861!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0392836198656013!GO:0035267;NuA4 histone acetyltransferase complex;0.0394673972342314!GO:0007242;intracellular signaling cascade;0.0397422874883613!GO:0005100;Rho GTPase activator activity;0.0403015303368585!GO:0005765;lysosomal membrane;0.0403400568181146!GO:0007346;regulation of progression through mitotic cell cycle;0.0406253995899267!GO:0046870;cadmium ion binding;0.0408926937132689!GO:0030833;regulation of actin filament polymerization;0.0409683676285345!GO:0051270;regulation of cell motility;0.0409683676285345!GO:0005996;monosaccharide metabolic process;0.0412852382394938!GO:0006002;fructose 6-phosphate metabolic process;0.0417417664526947!GO:0000118;histone deacetylase complex;0.0418569209286714!GO:0018193;peptidyl-amino acid modification;0.0421408140443933!GO:0030911;TPR domain binding;0.0422923674348262!GO:0009119;ribonucleoside metabolic process;0.0426207769525014!GO:0046822;regulation of nucleocytoplasmic transport;0.0427557744104022!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0427937874435337!GO:0051651;maintenance of cellular localization;0.0430378820503859!GO:0032508;DNA duplex unwinding;0.0430764913452465!GO:0032392;DNA geometric change;0.0430764913452465!GO:0030508;thiol-disulfide exchange intermediate activity;0.0431263745359505!GO:0032906;transforming growth factor-beta2 production;0.0431263745359505!GO:0032909;regulation of transforming growth factor-beta2 production;0.0431263745359505!GO:0006779;porphyrin biosynthetic process;0.0437862387512837!GO:0033014;tetrapyrrole biosynthetic process;0.0437862387512837!GO:0009893;positive regulation of metabolic process;0.0438767390795265!GO:0046519;sphingoid metabolic process;0.0438767390795265!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.04420427452011!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0442549414483832!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0445040216432788!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0445040216432788!GO:0046426;negative regulation of JAK-STAT cascade;0.0447424639266044!GO:0005784;translocon complex;0.045648482060435!GO:0050681;androgen receptor binding;0.0456923639186832!GO:0006144;purine base metabolic process;0.0458353841270976!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0458353841270976!GO:0010257;NADH dehydrogenase complex assembly;0.0458353841270976!GO:0033108;mitochondrial respiratory chain complex assembly;0.0458353841270976!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0462893404520396!GO:0045185;maintenance of protein localization;0.0482364327946474!GO:0051235;maintenance of localization;0.0482364327946474!GO:0000075;cell cycle checkpoint;0.0482364327946474!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0482479086748674!GO:0006807;nitrogen compound metabolic process;0.048501183798631!GO:0000123;histone acetyltransferase complex;0.0488846046579561!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0497311323632929 | |||
|sample_id=11285 | |sample_id=11285 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=carotid artery | |sample_tissue=carotid artery | ||
|top_motifs=GTF2A1,2:1.68618812167;ZNF238:1.4358384422;NFE2L1:1.35254632068;GZF1:1.2264715041;GLI1..3:1.20170416652;TLX1..3_NFIC{dimer}:1.16016550468;HIF1A:1.07574254346;IKZF1:1.07495708304;TFAP4:0.969689327549;CRX:0.959198975896;HES1:0.942868114378;HAND1,2:0.929240555066;MYBL2:0.919451723164;ALX4:0.872470587276;EBF1:0.871145772021;XCPE1{core}:0.860130293304;PATZ1:0.854464484019;ZNF148:0.850815788065;TEAD1:0.794260643141;TAL1_TCF{3,4,12}:0.788713962911;TBX4,5:0.765842562037;MTF1:0.72510595567;GFI1B:0.715862851202;PBX1:0.711481328825;ZIC1..3:0.704994015961;ZNF423:0.692343781053;LHX3,4:0.654354054451;TFAP2B:0.649087542907;ZBTB6:0.647615631273;POU3F1..4:0.645938248218;TFCP2:0.625242724992;GTF2I:0.624106816504;NANOG{mouse}:0.623498189553;HOX{A5,B5}:0.62030619294;AHR_ARNT_ARNT2:0.611708018655;PAX5:0.578330153858;SRF:0.55893654191;POU2F1..3:0.558395860791;FOS_FOS{B,L1}_JUN{B,D}:0.518277610985;TFAP2{A,C}:0.503781738733;NANOG:0.50339047801;NFE2L2:0.503294674558;TBP:0.480044668893;PRDM1:0.476668528892;HIC1:0.47584171706;NFATC1..3:0.473791146428;NKX2-2,8:0.471130753371;HMX1:0.467491399187;TP53:0.456894095084;NFIX:0.454997797754;BACH2:0.448813396373;YY1:0.43903945662;EGR1..3:0.431148776896;MTE{core}:0.418042296253;ESR1:0.416790786119;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.398489938713;bHLH_family:0.398146548545;STAT2,4,6:0.386636946664;RXR{A,B,G}:0.383442734425;EN1,2:0.374490362192;MYFfamily:0.372000270323;MZF1:0.369241918026;GCM1,2:0.368127649824;RREB1:0.366143953858;GFI1:0.352613847968;ONECUT1,2:0.352120275307;SOX17:0.342729401195;NR1H4:0.319961843031;ATF6:0.3119512466;KLF4:0.289417810175;HLF:0.287125544275;MAZ:0.286436168567;PPARG:0.28083356203;HSF1,2:0.27210862691;STAT5{A,B}:0.252049157816;SPZ1:0.251394206745;NR5A1,2:0.24248105868;AR:0.239596692295;SP1:0.236961573251;FOSL2:0.23463220602;MED-1{core}:0.226222865923;VSX1,2:0.217202457688;NR3C1:0.198530718467;CEBPA,B_DDIT3:0.193885230089;ADNP_IRX_SIX_ZHX:0.171206370654;PRRX1,2:0.152367433137;NFE2:0.146168057858;SOX{8,9,10}:0.13875431452;ESRRA:0.136659259584;LEF1_TCF7_TCF7L1,2:0.118578032812;NKX6-1,2:0.116119088708;HNF1A:0.112270607794;NHLH1,2:0.0995410092266;TLX2:0.0812580562272;TFDP1:0.0755650397765;FOX{I1,J2}:0.0677078535535;PAX3,7:0.0544177872206;RFX1:0.0540753022066;RXRA_VDR{dimer}:0.0270018667857;ELK1,4_GABP{A,B1}:0.0218393614721;XBP1:0.0118540554674;PAX1,9:0.00593304420847;GATA4:-0.0113893695899;ZNF143:-0.0211061845042;ZFP161:-0.0329331623418;MAFB:-0.033330939816;FOXL1:-0.034147814216;E2F1..5:-0.0406263691828;CDC5L:-0.0423321759582;SMAD1..7,9:-0.0732116822621;UFEwm:-0.086489868024;POU5F1:-0.0896057047745;REST:-0.0960668492113;EP300:-0.0965396043563;MEF2{A,B,C,D}:-0.116139744273;ZNF384:-0.121473734871;EVI1:-0.125325626569;POU6F1:-0.126803543798;NRF1:-0.151424140076;MYB:-0.152508707199;HBP1_HMGB_SSRP1_UBTF:-0.155916754942;NFKB1_REL_RELA:-0.15676681761;NKX3-1:-0.172666945599;NKX3-2:-0.176709140759;HOX{A4,D4}:-0.187248720097;PAX8:-0.191693078752;PAX6:-0.191981698814;HNF4A_NR2F1,2:-0.201473911464;RUNX1..3:-0.229199714409;TOPORS:-0.237653185408;FOXO1,3,4:-0.241443595864;POU1F1:-0.26425172135;JUN:-0.282211795691;ATF2:-0.283119101239;ELF1,2,4:-0.292239879996;IRF1,2:-0.294718285049;STAT1,3:-0.301915802876;GATA6:-0.31008312061;CREB1:-0.323337171759;FOXM1:-0.324900423653;ETS1,2:-0.35029130252;SOX2:-0.359122009668;DMAP1_NCOR{1,2}_SMARC:-0.391251376025;TGIF1:-0.40411518141;NFY{A,B,C}:-0.40417501709;NFIL3:-0.412677568401;SPIB:-0.414872093991;NR6A1:-0.446169134545;PAX2:-0.459218784636;HOXA9_MEIS1:-0.474510878033;SOX5:-0.477508811135;IRF7:-0.479045806133;BPTF:-0.479723223155;HOX{A6,A7,B6,B7}:-0.481377649504;SPI1:-0.52501145627;DBP:-0.552895478881;FOXQ1:-0.6712648178;ATF5_CREB3:-0.676381548734;FOX{D1,D2}:-0.677628270374;LMO2:-0.680505941141;ATF4:-0.685606401443;BREu{core}:-0.687578029977;RORA:-0.694048187319;FOXP3:-0.731290220257;CUX2:-0.731641885546;FOXD3:-0.742769409079;SREBF1,2:-0.754626324932;ALX1:-0.781586853458;FOXN1:-0.782756670006;NKX2-3_NKX2-5:-0.784436866644;ARID5B:-0.799890842329;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.806707112129;NKX2-1,4:-0.851457786128;FOXA2:-0.877159229341;RFX2..5_RFXANK_RFXAP:-0.889182644201;AIRE:-0.889644459057;PDX1:-0.890400661175;HMGA1,2:-0.937466425527;SNAI1..3:-0.945699409819;ZEB1:-0.946479240259;FOX{F1,F2,J1}:-1.01670080565;PAX4:-1.01685687724;TEF:-1.01760703613;OCT4_SOX2{dimer}:-1.04436863952;MYOD1:-1.1419747356;RBPJ:-1.18551686789;CDX1,2,4:-1.24853415385;PITX1..3:-1.27062414712;FOXP1:-1.33143505272;ZBTB16:-1.64574836118;T:-1.64775769849;IKZF2:-2.02824491428 | |top_motifs=GTF2A1,2:1.68618812167;ZNF238:1.4358384422;NFE2L1:1.35254632068;GZF1:1.2264715041;GLI1..3:1.20170416652;TLX1..3_NFIC{dimer}:1.16016550468;HIF1A:1.07574254346;IKZF1:1.07495708304;TFAP4:0.969689327549;CRX:0.959198975896;HES1:0.942868114378;HAND1,2:0.929240555066;MYBL2:0.919451723164;ALX4:0.872470587276;EBF1:0.871145772021;XCPE1{core}:0.860130293304;PATZ1:0.854464484019;ZNF148:0.850815788065;TEAD1:0.794260643141;TAL1_TCF{3,4,12}:0.788713962911;TBX4,5:0.765842562037;MTF1:0.72510595567;GFI1B:0.715862851202;PBX1:0.711481328825;ZIC1..3:0.704994015961;ZNF423:0.692343781053;LHX3,4:0.654354054451;TFAP2B:0.649087542907;ZBTB6:0.647615631273;POU3F1..4:0.645938248218;TFCP2:0.625242724992;GTF2I:0.624106816504;NANOG{mouse}:0.623498189553;HOX{A5,B5}:0.62030619294;AHR_ARNT_ARNT2:0.611708018655;PAX5:0.578330153858;SRF:0.55893654191;POU2F1..3:0.558395860791;FOS_FOS{B,L1}_JUN{B,D}:0.518277610985;TFAP2{A,C}:0.503781738733;NANOG:0.50339047801;NFE2L2:0.503294674558;TBP:0.480044668893;PRDM1:0.476668528892;HIC1:0.47584171706;NFATC1..3:0.473791146428;NKX2-2,8:0.471130753371;HMX1:0.467491399187;TP53:0.456894095084;NFIX:0.454997797754;BACH2:0.448813396373;YY1:0.43903945662;EGR1..3:0.431148776896;MTE{core}:0.418042296253;ESR1:0.416790786119;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.398489938713;bHLH_family:0.398146548545;STAT2,4,6:0.386636946664;RXR{A,B,G}:0.383442734425;EN1,2:0.374490362192;MYFfamily:0.372000270323;MZF1:0.369241918026;GCM1,2:0.368127649824;RREB1:0.366143953858;GFI1:0.352613847968;ONECUT1,2:0.352120275307;SOX17:0.342729401195;NR1H4:0.319961843031;ATF6:0.3119512466;KLF4:0.289417810175;HLF:0.287125544275;MAZ:0.286436168567;PPARG:0.28083356203;HSF1,2:0.27210862691;STAT5{A,B}:0.252049157816;SPZ1:0.251394206745;NR5A1,2:0.24248105868;AR:0.239596692295;SP1:0.236961573251;FOSL2:0.23463220602;MED-1{core}:0.226222865923;VSX1,2:0.217202457688;NR3C1:0.198530718467;CEBPA,B_DDIT3:0.193885230089;ADNP_IRX_SIX_ZHX:0.171206370654;PRRX1,2:0.152367433137;NFE2:0.146168057858;SOX{8,9,10}:0.13875431452;ESRRA:0.136659259584;LEF1_TCF7_TCF7L1,2:0.118578032812;NKX6-1,2:0.116119088708;HNF1A:0.112270607794;NHLH1,2:0.0995410092266;TLX2:0.0812580562272;TFDP1:0.0755650397765;FOX{I1,J2}:0.0677078535535;PAX3,7:0.0544177872206;RFX1:0.0540753022066;RXRA_VDR{dimer}:0.0270018667857;ELK1,4_GABP{A,B1}:0.0218393614721;XBP1:0.0118540554674;PAX1,9:0.00593304420847;GATA4:-0.0113893695899;ZNF143:-0.0211061845042;ZFP161:-0.0329331623418;MAFB:-0.033330939816;FOXL1:-0.034147814216;E2F1..5:-0.0406263691828;CDC5L:-0.0423321759582;SMAD1..7,9:-0.0732116822621;UFEwm:-0.086489868024;POU5F1:-0.0896057047745;REST:-0.0960668492113;EP300:-0.0965396043563;MEF2{A,B,C,D}:-0.116139744273;ZNF384:-0.121473734871;EVI1:-0.125325626569;POU6F1:-0.126803543798;NRF1:-0.151424140076;MYB:-0.152508707199;HBP1_HMGB_SSRP1_UBTF:-0.155916754942;NFKB1_REL_RELA:-0.15676681761;NKX3-1:-0.172666945599;NKX3-2:-0.176709140759;HOX{A4,D4}:-0.187248720097;PAX8:-0.191693078752;PAX6:-0.191981698814;HNF4A_NR2F1,2:-0.201473911464;RUNX1..3:-0.229199714409;TOPORS:-0.237653185408;FOXO1,3,4:-0.241443595864;POU1F1:-0.26425172135;JUN:-0.282211795691;ATF2:-0.283119101239;ELF1,2,4:-0.292239879996;IRF1,2:-0.294718285049;STAT1,3:-0.301915802876;GATA6:-0.31008312061;CREB1:-0.323337171759;FOXM1:-0.324900423653;ETS1,2:-0.35029130252;SOX2:-0.359122009668;DMAP1_NCOR{1,2}_SMARC:-0.391251376025;TGIF1:-0.40411518141;NFY{A,B,C}:-0.40417501709;NFIL3:-0.412677568401;SPIB:-0.414872093991;NR6A1:-0.446169134545;PAX2:-0.459218784636;HOXA9_MEIS1:-0.474510878033;SOX5:-0.477508811135;IRF7:-0.479045806133;BPTF:-0.479723223155;HOX{A6,A7,B6,B7}:-0.481377649504;SPI1:-0.52501145627;DBP:-0.552895478881;FOXQ1:-0.6712648178;ATF5_CREB3:-0.676381548734;FOX{D1,D2}:-0.677628270374;LMO2:-0.680505941141;ATF4:-0.685606401443;BREu{core}:-0.687578029977;RORA:-0.694048187319;FOXP3:-0.731290220257;CUX2:-0.731641885546;FOXD3:-0.742769409079;SREBF1,2:-0.754626324932;ALX1:-0.781586853458;FOXN1:-0.782756670006;NKX2-3_NKX2-5:-0.784436866644;ARID5B:-0.799890842329;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.806707112129;NKX2-1,4:-0.851457786128;FOXA2:-0.877159229341;RFX2..5_RFXANK_RFXAP:-0.889182644201;AIRE:-0.889644459057;PDX1:-0.890400661175;HMGA1,2:-0.937466425527;SNAI1..3:-0.945699409819;ZEB1:-0.946479240259;FOX{F1,F2,J1}:-1.01670080565;PAX4:-1.01685687724;TEF:-1.01760703613;OCT4_SOX2{dimer}:-1.04436863952;MYOD1:-1.1419747356;RBPJ:-1.18551686789;CDX1,2,4:-1.24853415385;PITX1..3:-1.27062414712;FOXP1:-1.33143505272;ZBTB16:-1.64574836118;T:-1.64775769849;IKZF2:-2.02824491428 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11285-116I7;search_select_hide=table117:FF:11285-116I7 | |||
}} | }} | ||
Latest revision as of 16:30, 3 June 2020
| Name: | Smooth Muscle Cells - Carotid, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11087 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11087
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11087
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.131 |
| 10 | 10 | 0.0811 |
| 100 | 100 | 0.327 |
| 101 | 101 | 0.0949 |
| 102 | 102 | 0.15 |
| 103 | 103 | 0.884 |
| 104 | 104 | 0.236 |
| 105 | 105 | 0.734 |
| 106 | 106 | 0.757 |
| 107 | 107 | 0.284 |
| 108 | 108 | 0.465 |
| 109 | 109 | 0.665 |
| 11 | 11 | 0.816 |
| 110 | 110 | 0.607 |
| 111 | 111 | 0.0026 |
| 112 | 112 | 0.361 |
| 113 | 113 | 0.0086 |
| 114 | 114 | 0.491 |
| 115 | 115 | 0.906 |
| 116 | 116 | 0.0623 |
| 117 | 117 | 0.435 |
| 118 | 118 | 0.25 |
| 119 | 119 | 0.084 |
| 12 | 12 | 0.437 |
| 120 | 120 | 0.977 |
| 121 | 121 | 0.695 |
| 122 | 122 | 0.846 |
| 123 | 123 | 0.00349 |
| 124 | 124 | 0.857 |
| 125 | 125 | 0.498 |
| 126 | 126 | 0.549 |
| 127 | 127 | 0.656 |
| 128 | 128 | 0.856 |
| 129 | 129 | 0.403 |
| 13 | 13 | 0.147 |
| 130 | 130 | 0.0241 |
| 131 | 131 | 0.382 |
| 132 | 132 | 0.64 |
| 133 | 133 | 0.152 |
| 134 | 134 | 0.267 |
| 135 | 135 | 0.832 |
| 136 | 136 | 0.413 |
| 137 | 137 | 0.122 |
| 138 | 138 | 0.273 |
| 139 | 139 | 0.445 |
| 14 | 14 | 0.63 |
| 140 | 140 | 0.0289 |
| 141 | 141 | 0.0481 |
| 142 | 142 | 0.916 |
| 143 | 143 | 0.373 |
| 144 | 144 | 0.447 |
| 145 | 145 | 0.487 |
| 146 | 146 | 0.143 |
| 147 | 147 | 0.226 |
| 148 | 148 | 0.0273 |
| 149 | 149 | 0.156 |
| 15 | 15 | 0.477 |
| 150 | 150 | 0.412 |
| 151 | 151 | 0.801 |
| 152 | 152 | 0.0541 |
| 153 | 153 | 0.527 |
| 154 | 154 | 0.536 |
| 155 | 155 | 0.0712 |
| 156 | 156 | 0.769 |
| 157 | 157 | 0.493 |
| 158 | 158 | 0.00139 |
| 159 | 159 | 0.299 |
| 16 | 16 | 0.627 |
| 160 | 160 | 0.625 |
| 161 | 161 | 0.867 |
| 162 | 162 | 0.809 |
| 163 | 163 | 0.963 |
| 164 | 164 | 0.824 |
| 165 | 165 | 0.53 |
| 166 | 166 | 0.66 |
| 167 | 167 | 0.155 |
| 168 | 168 | 0.598 |
| 169 | 169 | 0.215 |
| 17 | 17 | 0.795 |
| 18 | 18 | 0.405 |
| 19 | 19 | 0.253 |
| 2 | 2 | 0.135 |
| 20 | 20 | 0.221 |
| 21 | 21 | 0.589 |
| 22 | 22 | 0.237 |
| 23 | 23 | 0.865 |
| 24 | 24 | 0.511 |
| 25 | 25 | 0.0786 |
| 26 | 26 | 0.561 |
| 27 | 27 | 0.691 |
| 28 | 28 | 0.0473 |
| 29 | 29 | 0.731 |
| 3 | 3 | 0.495 |
| 30 | 30 | 0.0685 |
| 31 | 31 | 0.863 |
| 32 | 32 | 0.00107 |
| 33 | 33 | 0.954 |
| 34 | 34 | 0.261 |
| 35 | 35 | 0.713 |
| 36 | 36 | 0.139 |
| 37 | 37 | 0.878 |
| 38 | 38 | 0.43 |
| 39 | 39 | 0.281 |
| 4 | 4 | 0.61 |
| 40 | 40 | 0.452 |
| 41 | 41 | 0.476 |
| 42 | 42 | 0.772 |
| 43 | 43 | 0.797 |
| 44 | 44 | 0.297 |
| 45 | 45 | 0.329 |
| 46 | 46 | 0.857 |
| 47 | 47 | 0.731 |
| 48 | 48 | 0.832 |
| 49 | 49 | 0.131 |
| 5 | 5 | 0.841 |
| 50 | 50 | 0.371 |
| 51 | 51 | 0.944 |
| 52 | 52 | 0.96 |
| 53 | 53 | 0.187 |
| 54 | 54 | 0.976 |
| 55 | 55 | 0.588 |
| 56 | 56 | 0.69 |
| 57 | 57 | 0.627 |
| 58 | 58 | 0.176 |
| 59 | 59 | 0.232 |
| 6 | 6 | 0.635 |
| 60 | 60 | 0.498 |
| 61 | 61 | 0.384 |
| 62 | 62 | 0.208 |
| 63 | 63 | 0.868 |
| 64 | 64 | 0.722 |
| 65 | 65 | 0.726 |
| 66 | 66 | 0.804 |
| 67 | 67 | 0.776 |
| 68 | 68 | 0.0538 |
| 69 | 69 | 0.642 |
| 7 | 7 | 0.187 |
| 70 | 70 | 0.983 |
| 71 | 71 | 0.523 |
| 72 | 72 | 0.523 |
| 73 | 73 | 0.03 |
| 74 | 74 | 0.836 |
| 75 | 75 | 0.988 |
| 76 | 76 | 0.476 |
| 77 | 77 | 0.126 |
| 78 | 78 | 0.0796 |
| 79 | 79 | 0.196 |
| 8 | 8 | 0.763 |
| 80 | 80 | 0.584 |
| 81 | 81 | 0.401 |
| 82 | 82 | 0.485 |
| 83 | 83 | 0.576 |
| 84 | 84 | 0.718 |
| 85 | 85 | 0.929 |
| 86 | 86 | 0.919 |
| 87 | 87 | 0.0294 |
| 88 | 88 | 0.125 |
| 89 | 89 | 0.248 |
| 9 | 9 | 0.154 |
| 90 | 90 | 0.13 |
| 91 | 91 | 0.965 |
| 92 | 92 | 0.858 |
| 93 | 93 | 0.485 |
| 94 | 94 | 0.451 |
| 95 | 95 | 0.928 |
| 96 | 96 | 0.196 |
| 97 | 97 | 0.611 |
| 98 | 98 | 0.444 |
| 99 | 99 | 0.00564 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11087
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000171 human smooth muscle cell of the carotid artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002596 (smooth muscle cell of the carotid artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005396 (carotid artery segment)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000171 (human smooth muscle cell of the carotid artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
