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{{f5samples
{{f5samples
|id=FF:11316-117D2
|DRA_sample_Accession=CAGE@SAMD00005749
|name=Astrocyte - cerebral cortex, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005749
|sample_id=11316
|accession_numbers=CAGE;DRX008116;DRR008988;DRZ000413;DRZ001798;DRZ011763;DRZ013148
|rna_tube_id=117D2
|accession_numbers_RNASeq=sRNA-Seq;DRX037077;DRR041443;DRZ007085
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
|rna_position=D2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=1091
|rna_catalog_number=SC1805
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=cerebral cortex
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=astrocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.609
|sample_note=
|profile_hcage=CNhs11960,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10006,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000030,CL:0000055,CL:0000095,CL:0000123,CL:0000125,CL:0000126,CL:0000127,CL:0000128,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000243,CL:0000255,CL:0000333,CL:0000339,CL:0000548,CL:0002319,CL:0002321,CL:0002371,CL:0002453,CL:0002605
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0000956,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001869,UBERON:0001890,UBERON:0001893,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000194
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002605;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=117
|rna_catalog_number=SC1805
|rna_concentration=0.609
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1091
|rna_od260/230=
|rna_od260/280=
|rna_position=D2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117D2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10006.CTTGTA
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=astrocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.82509716159605e-281!GO:0043226;organelle;1.5087950533737e-230!GO:0043229;intracellular organelle;3.15659567357195e-230!GO:0043231;intracellular membrane-bound organelle;2.5092907956113e-222!GO:0043227;membrane-bound organelle;3.91937461877963e-222!GO:0005737;cytoplasm;3.39474813672872e-188!GO:0044422;organelle part;4.51684325770417e-163!GO:0044446;intracellular organelle part;1.30096024666668e-161!GO:0044444;cytoplasmic part;7.55824649498682e-120!GO:0032991;macromolecular complex;1.81670901582048e-114!GO:0005634;nucleus;2.13743110460565e-108!GO:0044237;cellular metabolic process;6.56733589566627e-96!GO:0044238;primary metabolic process;1.16008995933884e-95!GO:0030529;ribonucleoprotein complex;3.2627503815479e-92!GO:0043170;macromolecule metabolic process;2.01459717015676e-90!GO:0005515;protein binding;1.34709432678435e-86!GO:0044428;nuclear part;2.90187381265445e-82!GO:0043233;organelle lumen;3.25544027226366e-75!GO:0031974;membrane-enclosed lumen;3.25544027226366e-75!GO:0003723;RNA binding;5.53071041773516e-75!GO:0016043;cellular component organization and biogenesis;9.93653755877848e-69!GO:0005739;mitochondrion;6.58633524503952e-65!GO:0043234;protein complex;1.26265035741098e-59!GO:0043283;biopolymer metabolic process;2.64872101449241e-59!GO:0005840;ribosome;8.06005853747028e-55!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.1358549644355e-52!GO:0043228;non-membrane-bound organelle;3.31712001341717e-50!GO:0043232;intracellular non-membrane-bound organelle;3.31712001341717e-50!GO:0006396;RNA processing;4.29852121975152e-50!GO:0010467;gene expression;1.19734326493532e-49!GO:0031090;organelle membrane;2.6261133111324e-48!GO:0006996;organelle organization and biogenesis;4.32316031423574e-48!GO:0003735;structural constituent of ribosome;8.41721860692048e-48!GO:0006412;translation;1.2761808552326e-47!GO:0031981;nuclear lumen;3.9921585220494e-47!GO:0033036;macromolecule localization;2.58939685357661e-45!GO:0044429;mitochondrial part;1.08285793425419e-44!GO:0015031;protein transport;5.19438615793373e-44!GO:0006259;DNA metabolic process;7.42973005729536e-44!GO:0031967;organelle envelope;7.80322238941367e-44!GO:0031975;envelope;1.59182495486907e-43!GO:0019538;protein metabolic process;2.87972149875103e-43!GO:0016071;mRNA metabolic process;6.6445253768276e-42!GO:0008104;protein localization;3.6172721534193e-41!GO:0033279;ribosomal subunit;6.69970540857016e-41!GO:0046907;intracellular transport;1.37204539698944e-40!GO:0045184;establishment of protein localization;6.32599937928632e-40!GO:0008380;RNA splicing;1.17867188204071e-39!GO:0007049;cell cycle;3.94620656275817e-39!GO:0044260;cellular macromolecule metabolic process;1.82484094463124e-38!GO:0044267;cellular protein metabolic process;3.13370416975821e-38!GO:0009058;biosynthetic process;8.74717116274825e-38!GO:0044249;cellular biosynthetic process;1.42721350357948e-36!GO:0065003;macromolecular complex assembly;1.71497489014164e-36!GO:0006397;mRNA processing;4.06662885307017e-36!GO:0009059;macromolecule biosynthetic process;7.41068464105294e-36!GO:0005829;cytosol;2.61817883343971e-35!GO:0003676;nucleic acid binding;9.11559101702035e-34!GO:0022607;cellular component assembly;6.60956148937674e-33!GO:0000278;mitotic cell cycle;2.59792530378471e-31!GO:0006886;intracellular protein transport;3.58575344462143e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49392406241854e-30!GO:0022402;cell cycle process;4.11228163907593e-30!GO:0005654;nucleoplasm;9.12764002451384e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.2829483947021e-29!GO:0005740;mitochondrial envelope;5.17230504474083e-29!GO:0019866;organelle inner membrane;2.24353090607942e-28!GO:0000166;nucleotide binding;4.36410917040356e-28!GO:0005681;spliceosome;9.00056831316213e-28!GO:0005694;chromosome;1.51086094775926e-27!GO:0031966;mitochondrial membrane;2.82889812456191e-27!GO:0051649;establishment of cellular localization;7.44429910284817e-27!GO:0051641;cellular localization;1.35732964171153e-26!GO:0005743;mitochondrial inner membrane;6.30037722510554e-26!GO:0044427;chromosomal part;8.0145207749892e-26!GO:0022403;cell cycle phase;2.17825982569006e-25!GO:0000087;M phase of mitotic cell cycle;3.32666449520983e-25!GO:0007067;mitosis;7.33133181394713e-25!GO:0016070;RNA metabolic process;3.14045493917684e-24!GO:0044451;nucleoplasm part;5.26788728092073e-24!GO:0044445;cytosolic part;1.04786300306226e-23!GO:0051276;chromosome organization and biogenesis;1.30368076675347e-23!GO:0051301;cell division;2.17399545633632e-23!GO:0006974;response to DNA damage stimulus;2.24376567994037e-23!GO:0016462;pyrophosphatase activity;1.77007106115538e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.44833193949914e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.60426839013658e-22!GO:0017111;nucleoside-triphosphatase activity;6.23479055120562e-22!GO:0006119;oxidative phosphorylation;1.16009302561899e-21!GO:0000279;M phase;2.04867153578261e-21!GO:0015934;large ribosomal subunit;3.92127331564913e-21!GO:0015935;small ribosomal subunit;7.56799421896989e-21!GO:0012505;endomembrane system;7.1372781339658e-20!GO:0044455;mitochondrial membrane part;1.08994729622198e-19!GO:0006281;DNA repair;1.29528722360671e-19!GO:0031980;mitochondrial lumen;2.53195901758455e-19!GO:0005759;mitochondrial matrix;2.53195901758455e-19!GO:0016874;ligase activity;2.77637167113204e-19!GO:0032553;ribonucleotide binding;3.01214362739802e-19!GO:0032555;purine ribonucleotide binding;3.01214362739802e-19!GO:0017076;purine nucleotide binding;1.46105545532213e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;3.1277218030843e-18!GO:0006260;DNA replication;3.40253840995616e-18!GO:0006512;ubiquitin cycle;3.54137252786703e-18!GO:0006457;protein folding;4.84326053639745e-18!GO:0022618;protein-RNA complex assembly;7.08427766206817e-18!GO:0006323;DNA packaging;1.93943611995431e-17!GO:0048770;pigment granule;5.31171991501143e-17!GO:0042470;melanosome;5.31171991501143e-17!GO:0005524;ATP binding;5.62322166004272e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.08476067282762e-16!GO:0005746;mitochondrial respiratory chain;1.16339595285135e-16!GO:0044265;cellular macromolecule catabolic process;1.3777968678404e-16!GO:0032559;adenyl ribonucleotide binding;1.46015002614472e-16!GO:0006605;protein targeting;1.69702262721897e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.85344388273175e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.3182936332064e-16!GO:0005730;nucleolus;2.64802644552622e-16!GO:0019941;modification-dependent protein catabolic process;3.57046749698122e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.57046749698122e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.00932862456446e-16!GO:0009719;response to endogenous stimulus;5.22286061317212e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.05289465359248e-16!GO:0044257;cellular protein catabolic process;7.75780544676758e-16!GO:0030554;adenyl nucleotide binding;9.66527677101412e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.43741120235974e-15!GO:0003954;NADH dehydrogenase activity;1.43741120235974e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.43741120235974e-15!GO:0015630;microtubule cytoskeleton;1.74039305373157e-15!GO:0031965;nuclear membrane;1.74192836118747e-15!GO:0005635;nuclear envelope;1.74192836118747e-15!GO:0008134;transcription factor binding;3.40606966518815e-15!GO:0005794;Golgi apparatus;5.44309263705069e-15!GO:0005761;mitochondrial ribosome;6.87832332675684e-15!GO:0000313;organellar ribosome;6.87832332675684e-15!GO:0008135;translation factor activity, nucleic acid binding;6.97970627884197e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.91822009391835e-15!GO:0043285;biopolymer catabolic process;8.00114271807781e-15!GO:0044453;nuclear membrane part;8.97283504870291e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.39618497807375e-14!GO:0000375;RNA splicing, via transesterification reactions;3.39618497807375e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.39618497807375e-14!GO:0051186;cofactor metabolic process;3.91406106888272e-14!GO:0009057;macromolecule catabolic process;4.98137593124025e-14!GO:0051726;regulation of cell cycle;9.42091262772433e-14!GO:0043412;biopolymer modification;1.18057891193962e-13!GO:0000074;regulation of progression through cell cycle;1.24475863221e-13!GO:0030163;protein catabolic process;1.49748239608848e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.76821108616181e-13!GO:0045271;respiratory chain complex I;1.76821108616181e-13!GO:0005747;mitochondrial respiratory chain complex I;1.76821108616181e-13!GO:0065004;protein-DNA complex assembly;1.82897945200127e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.86462732597604e-13!GO:0042773;ATP synthesis coupled electron transport;1.86462732597604e-13!GO:0000785;chromatin;2.29004454523293e-13!GO:0006913;nucleocytoplasmic transport;3.57929427443288e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.92186664627894e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.71427620486371e-13!GO:0044248;cellular catabolic process;5.73100782568444e-13!GO:0005783;endoplasmic reticulum;5.77871351836469e-13!GO:0006333;chromatin assembly or disassembly;6.36812110586021e-13!GO:0005643;nuclear pore;7.2726977922013e-13!GO:0050794;regulation of cellular process;1.09947992583426e-12!GO:0051169;nuclear transport;1.11115699827711e-12!GO:0051082;unfolded protein binding;1.80290929889524e-12!GO:0006464;protein modification process;2.8445216366933e-12!GO:0048193;Golgi vesicle transport;2.9796419758104e-12!GO:0016604;nuclear body;3.69919390214006e-12!GO:0042254;ribosome biogenesis and assembly;4.50498869933922e-12!GO:0044432;endoplasmic reticulum part;7.84628091895508e-12!GO:0016887;ATPase activity;8.09272616197051e-12!GO:0042623;ATPase activity, coupled;8.70985860415314e-12!GO:0003743;translation initiation factor activity;1.50530107975427e-11!GO:0006732;coenzyme metabolic process;1.50839586441088e-11!GO:0000775;chromosome, pericentric region;1.86319191844875e-11!GO:0006403;RNA localization;3.94415506481062e-11!GO:0006413;translational initiation;4.02549332065543e-11!GO:0043687;post-translational protein modification;4.42501506716563e-11!GO:0006334;nucleosome assembly;5.09654502155136e-11!GO:0050657;nucleic acid transport;7.98523209142956e-11!GO:0051236;establishment of RNA localization;7.98523209142956e-11!GO:0050658;RNA transport;7.98523209142956e-11!GO:0004386;helicase activity;1.32782003482156e-10!GO:0009055;electron carrier activity;1.57159413106105e-10!GO:0065002;intracellular protein transport across a membrane;1.69306071678456e-10!GO:0016192;vesicle-mediated transport;1.71896204049665e-10!GO:0005819;spindle;1.870345960305e-10!GO:0008639;small protein conjugating enzyme activity;3.16805676380308e-10!GO:0031497;chromatin assembly;3.50228686856503e-10!GO:0046930;pore complex;4.90350565671754e-10!GO:0016607;nuclear speck;5.69190198925251e-10!GO:0004842;ubiquitin-protein ligase activity;6.20161931123889e-10!GO:0008565;protein transporter activity;6.65977076912954e-10!GO:0006366;transcription from RNA polymerase II promoter;6.84411958283491e-10!GO:0006446;regulation of translational initiation;8.48984605921977e-10!GO:0017038;protein import;1.16182056253336e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.22794721224764e-09!GO:0019787;small conjugating protein ligase activity;1.37181769474647e-09!GO:0048523;negative regulation of cellular process;1.42302705591804e-09!GO:0006461;protein complex assembly;1.58569882055451e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.60426697921955e-09!GO:0009259;ribonucleotide metabolic process;2.22919127109365e-09!GO:0003712;transcription cofactor activity;2.38660168057494e-09!GO:0050789;regulation of biological process;2.44692817477205e-09!GO:0006163;purine nucleotide metabolic process;2.96400371680222e-09!GO:0006399;tRNA metabolic process;3.85951024181866e-09!GO:0051028;mRNA transport;4.73025605375742e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.91711329700441e-09!GO:0005793;ER-Golgi intermediate compartment;9.65507436034109e-09!GO:0007010;cytoskeleton organization and biogenesis;9.81243695491742e-09!GO:0009060;aerobic respiration;1.02086949354501e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.06212534605301e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.1407992487686e-08!GO:0016881;acid-amino acid ligase activity;1.18570077466635e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.18749665642538e-08!GO:0016568;chromatin modification;1.18749665642538e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.33616726825842e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.33616726825842e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.33616726825842e-08!GO:0003697;single-stranded DNA binding;1.35970638646887e-08!GO:0006164;purine nucleotide biosynthetic process;1.51904234692559e-08!GO:0009150;purine ribonucleotide metabolic process;1.74275297944024e-08!GO:0005789;endoplasmic reticulum membrane;1.86282339442497e-08!GO:0045333;cellular respiration;2.24117191861987e-08!GO:0008026;ATP-dependent helicase activity;2.2890166757093e-08!GO:0006364;rRNA processing;2.40652078850408e-08!GO:0006261;DNA-dependent DNA replication;2.90737972686315e-08!GO:0009260;ribonucleotide biosynthetic process;3.15147723534759e-08!GO:0043566;structure-specific DNA binding;3.3253915587073e-08!GO:0043038;amino acid activation;3.38196948772088e-08!GO:0006418;tRNA aminoacylation for protein translation;3.38196948772088e-08!GO:0043039;tRNA aminoacylation;3.38196948772088e-08!GO:0003924;GTPase activity;3.44377968558445e-08!GO:0012501;programmed cell death;3.65603004621799e-08!GO:0051329;interphase of mitotic cell cycle;3.9536978236849e-08!GO:0006915;apoptosis;5.44119302899066e-08!GO:0048519;negative regulation of biological process;5.65978281426981e-08!GO:0007051;spindle organization and biogenesis;6.05279308220977e-08!GO:0016072;rRNA metabolic process;6.89644958943874e-08!GO:0051325;interphase;8.4672867917213e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.14143950889688e-08!GO:0009141;nucleoside triphosphate metabolic process;1.11557944049946e-07!GO:0015986;ATP synthesis coupled proton transport;1.24189721953392e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.24189721953392e-07!GO:0051188;cofactor biosynthetic process;1.37990442758673e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.51902530881064e-07!GO:0005813;centrosome;1.67157649440247e-07!GO:0000075;cell cycle checkpoint;1.67157649440247e-07!GO:0005874;microtubule;1.99508356733398e-07!GO:0019829;cation-transporting ATPase activity;2.11564812069111e-07!GO:0031324;negative regulation of cellular metabolic process;2.36077426604976e-07!GO:0016740;transferase activity;2.45273910642421e-07!GO:0009056;catabolic process;2.47123590105648e-07!GO:0005667;transcription factor complex;2.5940181337654e-07!GO:0019222;regulation of metabolic process;2.68922990932919e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.72851073957174e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.72851073957174e-07!GO:0005815;microtubule organizing center;2.88566987774491e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.03075164731756e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.03075164731756e-07!GO:0006099;tricarboxylic acid cycle;3.05997959389248e-07!GO:0046356;acetyl-CoA catabolic process;3.05997959389248e-07!GO:0051170;nuclear import;3.25988246254489e-07!GO:0008219;cell death;3.34808678962768e-07!GO:0016265;death;3.34808678962768e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.51974067389694e-07!GO:0007005;mitochondrion organization and biogenesis;3.58524132474334e-07!GO:0031252;leading edge;3.77091089843823e-07!GO:0032446;protein modification by small protein conjugation;3.96659683515376e-07!GO:0048475;coated membrane;4.41807773662642e-07!GO:0030117;membrane coat;4.41807773662642e-07!GO:0044431;Golgi apparatus part;5.12217873288771e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.50551142588391e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.50551142588391e-07!GO:0006606;protein import into nucleus;5.95822527463167e-07!GO:0006084;acetyl-CoA metabolic process;6.50928857624671e-07!GO:0016567;protein ubiquitination;8.00029241262302e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.00029241262302e-07!GO:0000245;spliceosome assembly;8.27406432513778e-07!GO:0043623;cellular protein complex assembly;9.04495800814592e-07!GO:0009892;negative regulation of metabolic process;9.35482114141035e-07!GO:0046034;ATP metabolic process;1.13950661679273e-06!GO:0045259;proton-transporting ATP synthase complex;1.40876853511127e-06!GO:0008094;DNA-dependent ATPase activity;1.42265299177101e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.4704032940312e-06!GO:0005657;replication fork;1.4704032940312e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.47687582952011e-06!GO:0000776;kinetochore;1.53549843470525e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.74663066487091e-06!GO:0007059;chromosome segregation;1.92150274575081e-06!GO:0006754;ATP biosynthetic process;1.93780198373971e-06!GO:0006753;nucleoside phosphate metabolic process;1.93780198373971e-06!GO:0006793;phosphorus metabolic process;2.42186696544131e-06!GO:0006796;phosphate metabolic process;2.42186696544131e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.42891884548521e-06!GO:0045786;negative regulation of progression through cell cycle;2.45159717568237e-06!GO:0030120;vesicle coat;2.80980526440547e-06!GO:0030662;coated vesicle membrane;2.80980526440547e-06!GO:0009109;coenzyme catabolic process;2.84097213176627e-06!GO:0007017;microtubule-based process;3.35952540595087e-06!GO:0008092;cytoskeletal protein binding;3.79675333341094e-06!GO:0006752;group transfer coenzyme metabolic process;4.03317083908227e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.13887078340827e-06!GO:0051246;regulation of protein metabolic process;4.45151342702059e-06!GO:0051187;cofactor catabolic process;4.83018083296842e-06!GO:0016779;nucleotidyltransferase activity;5.09430193282247e-06!GO:0005768;endosome;5.11385948985826e-06!GO:0005762;mitochondrial large ribosomal subunit;5.15624651016012e-06!GO:0000315;organellar large ribosomal subunit;5.15624651016012e-06!GO:0009108;coenzyme biosynthetic process;5.35040464882271e-06!GO:0016363;nuclear matrix;5.9976101247608e-06!GO:0016310;phosphorylation;6.0280922720657e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.7148535404939e-06!GO:0000151;ubiquitin ligase complex;8.27128887832588e-06!GO:0015078;hydrogen ion transmembrane transporter activity;9.10463132863211e-06!GO:0009117;nucleotide metabolic process;9.45337656287239e-06!GO:0016481;negative regulation of transcription;9.56419750776758e-06!GO:0000786;nucleosome;1.23207118636893e-05!GO:0003724;RNA helicase activity;1.53300241401906e-05!GO:0004298;threonine endopeptidase activity;1.58252369975391e-05!GO:0006613;cotranslational protein targeting to membrane;1.59207452343614e-05!GO:0000139;Golgi membrane;1.70537200756883e-05!GO:0016564;transcription repressor activity;1.80502149976567e-05!GO:0008361;regulation of cell size;1.89519098442755e-05!GO:0051168;nuclear export;2.11268245275967e-05!GO:0016049;cell growth;2.19248812951292e-05!GO:0005525;GTP binding;2.3748890812592e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.3748890812592e-05!GO:0051427;hormone receptor binding;3.0752013629593e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.31141403208558e-05!GO:0031988;membrane-bound vesicle;3.60129422829451e-05!GO:0007093;mitotic cell cycle checkpoint;3.71786682383364e-05!GO:0031323;regulation of cellular metabolic process;3.77362044048244e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.41522205441635e-05!GO:0007088;regulation of mitosis;4.43113182761131e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.63271135800466e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;4.8147537105206e-05!GO:0003899;DNA-directed RNA polymerase activity;4.90276221084792e-05!GO:0005788;endoplasmic reticulum lumen;5.35544302810317e-05!GO:0043069;negative regulation of programmed cell death;5.39970828766734e-05!GO:0016853;isomerase activity;5.68514225302257e-05!GO:0016126;sterol biosynthetic process;5.82870017750293e-05!GO:0042981;regulation of apoptosis;6.13169041363344e-05!GO:0043067;regulation of programmed cell death;6.13370532295325e-05!GO:0003682;chromatin binding;6.33025454989524e-05!GO:0031982;vesicle;6.47087982244789e-05!GO:0035257;nuclear hormone receptor binding;6.85134293699981e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.86183900821395e-05!GO:0043066;negative regulation of apoptosis;7.04601869021593e-05!GO:0006350;transcription;8.24380040913986e-05!GO:0005798;Golgi-associated vesicle;8.40288503544807e-05!GO:0003714;transcription corepressor activity;8.70669828180188e-05!GO:0031410;cytoplasmic vesicle;8.9631067775716e-05!GO:0044440;endosomal part;9.38450455237059e-05!GO:0010008;endosome membrane;9.38450455237059e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.40512690439169e-05!GO:0015631;tubulin binding;9.61333969577081e-05!GO:0005905;coated pit;9.87444933614985e-05!GO:0019899;enzyme binding;9.88548473825873e-05!GO:0001558;regulation of cell growth;0.000106253969389514!GO:0006302;double-strand break repair;0.000116702634469898!GO:0006916;anti-apoptosis;0.000124546397283559!GO:0005770;late endosome;0.000126817346852388!GO:0003684;damaged DNA binding;0.000139935928929424!GO:0016859;cis-trans isomerase activity;0.000150774094418117!GO:0043021;ribonucleoprotein binding;0.000157256772337104!GO:0000059;protein import into nucleus, docking;0.000157256772337104!GO:0008654;phospholipid biosynthetic process;0.0001856910110139!GO:0016563;transcription activator activity;0.000192428218756985!GO:0019843;rRNA binding;0.000203629167820074!GO:0048471;perinuclear region of cytoplasm;0.000204354629205018!GO:0007052;mitotic spindle organization and biogenesis;0.000209999677894141!GO:0003713;transcription coactivator activity;0.000211805111121497!GO:0006414;translational elongation;0.000226062515383179!GO:0000314;organellar small ribosomal subunit;0.000227880037340733!GO:0005763;mitochondrial small ribosomal subunit;0.000227880037340733!GO:0030867;rough endoplasmic reticulum membrane;0.000232192113064357!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000233373173995885!GO:0006695;cholesterol biosynthetic process;0.00024374227073144!GO:0030029;actin filament-based process;0.000247715718421809!GO:0065007;biological regulation;0.000256324009375122!GO:0045454;cell redox homeostasis;0.00029249427208576!GO:0032561;guanyl ribonucleotide binding;0.000302403862631026!GO:0019001;guanyl nucleotide binding;0.000302403862631026!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000302669327877891!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000317076208225197!GO:0003690;double-stranded DNA binding;0.000324695899169863!GO:0003729;mRNA binding;0.000325449691405401!GO:0051052;regulation of DNA metabolic process;0.000385247011073968!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000408502888221023!GO:0000902;cell morphogenesis;0.000412274367224294!GO:0032989;cellular structure morphogenesis;0.000412274367224294!GO:0005876;spindle microtubule;0.000431301892867982!GO:0006626;protein targeting to mitochondrion;0.000449879021995246!GO:0005885;Arp2/3 protein complex;0.000498703026888002!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000519966031599513!GO:0010468;regulation of gene expression;0.000519966031599513!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000527336383511565!GO:0006310;DNA recombination;0.000564457562722625!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000585712589716932!GO:0008186;RNA-dependent ATPase activity;0.000589049050475877!GO:0004674;protein serine/threonine kinase activity;0.000619353394856469!GO:0016491;oxidoreductase activity;0.000632338521398618!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000658229516884002!GO:0000082;G1/S transition of mitotic cell cycle;0.000658792791780953!GO:0008250;oligosaccharyl transferase complex;0.000674074925888221!GO:0030027;lamellipodium;0.000775211907303539!GO:0051920;peroxiredoxin activity;0.000808128014571485!GO:0003678;DNA helicase activity;0.000834069710324155!GO:0016787;hydrolase activity;0.000846421677859118!GO:0006612;protein targeting to membrane;0.000871179441111697!GO:0004576;oligosaccharyl transferase activity;0.000873271605958458!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000873886511217967!GO:0005769;early endosome;0.000899370450608024!GO:0048468;cell development;0.000899375249883866!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000944126313110819!GO:0043681;protein import into mitochondrion;0.000974873825062303!GO:0005048;signal sequence binding;0.00101620165363611!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0010249999103287!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0010249999103287!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0010249999103287!GO:0031968;organelle outer membrane;0.0010517969594292!GO:0006839;mitochondrial transport;0.00106371902022729!GO:0006383;transcription from RNA polymerase III promoter;0.00126505986885281!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00132988999787377!GO:0001726;ruffle;0.00133024496863085!GO:0005741;mitochondrial outer membrane;0.00145511230330397!GO:0005637;nuclear inner membrane;0.00145777187024663!GO:0005875;microtubule associated complex;0.00153685544620675!GO:0006352;transcription initiation;0.00156769880569222!GO:0005684;U2-dependent spliceosome;0.00159409908564824!GO:0033116;ER-Golgi intermediate compartment membrane;0.00165639711020216!GO:0051252;regulation of RNA metabolic process;0.00165874135913043!GO:0004004;ATP-dependent RNA helicase activity;0.00167054580997978!GO:0006402;mRNA catabolic process;0.00168607508951061!GO:0030118;clathrin coat;0.00170764344160245!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00173105681461009!GO:0031072;heat shock protein binding;0.00178498379671675!GO:0019867;outer membrane;0.00189996413450002!GO:0000228;nuclear chromosome;0.00189996413450002!GO:0000910;cytokinesis;0.00204217719740191!GO:0016741;transferase activity, transferring one-carbon groups;0.00206913094175176!GO:0051789;response to protein stimulus;0.00210933679455775!GO:0006986;response to unfolded protein;0.00210933679455775!GO:0032774;RNA biosynthetic process;0.00212984144206423!GO:0032508;DNA duplex unwinding;0.00216283140988318!GO:0032392;DNA geometric change;0.00216283140988318!GO:0040008;regulation of growth;0.00226217645217455!GO:0018196;peptidyl-asparagine modification;0.00231964286971918!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00231964286971918!GO:0031124;mRNA 3'-end processing;0.00234795581455461!GO:0000792;heterochromatin;0.00236169365772413!GO:0006351;transcription, DNA-dependent;0.00259145324886862!GO:0051128;regulation of cellular component organization and biogenesis;0.00267908635824443!GO:0016044;membrane organization and biogenesis;0.00268123934825372!GO:0000922;spindle pole;0.00275839690101236!GO:0030521;androgen receptor signaling pathway;0.00287498275114319!GO:0048500;signal recognition particle;0.002915103920201!GO:0008168;methyltransferase activity;0.002915103920201!GO:0007006;mitochondrial membrane organization and biogenesis;0.002915103920201!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00295330524564985!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00295330524564985!GO:0006268;DNA unwinding during replication;0.00296945315186638!GO:0043624;cellular protein complex disassembly;0.00311970300980017!GO:0045892;negative regulation of transcription, DNA-dependent;0.00326872615736593!GO:0042802;identical protein binding;0.00340079761624543!GO:0009116;nucleoside metabolic process;0.00349728970218797!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00363636300631944!GO:0035258;steroid hormone receptor binding;0.00367912435629018!GO:0005791;rough endoplasmic reticulum;0.0037104401268445!GO:0008139;nuclear localization sequence binding;0.00388741775763896!GO:0000070;mitotic sister chromatid segregation;0.00404018295751644!GO:0030133;transport vesicle;0.0042312130015973!GO:0042393;histone binding;0.0042312130015973!GO:0032984;macromolecular complex disassembly;0.0042312130015973!GO:0000819;sister chromatid segregation;0.0042312130015973!GO:0008022;protein C-terminus binding;0.00423175900182621!GO:0043284;biopolymer biosynthetic process;0.00431840323137418!GO:0005856;cytoskeleton;0.00446036409553673!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00454956598156971!GO:0045893;positive regulation of transcription, DNA-dependent;0.00456234536070685!GO:0046474;glycerophospholipid biosynthetic process;0.00460196421821025!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00471755613505571!GO:0043488;regulation of mRNA stability;0.00479469735932405!GO:0043487;regulation of RNA stability;0.00479469735932405!GO:0048487;beta-tubulin binding;0.0048049580766777!GO:0003677;DNA binding;0.00492442113586961!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00492442113586961!GO:0015399;primary active transmembrane transporter activity;0.00492442113586961!GO:0006611;protein export from nucleus;0.00492442113586961!GO:0008312;7S RNA binding;0.00500565899342545!GO:0030658;transport vesicle membrane;0.00503457156179298!GO:0006338;chromatin remodeling;0.00533290951305204!GO:0030880;RNA polymerase complex;0.0053691690028848!GO:0017166;vinculin binding;0.0053766878120382!GO:0009165;nucleotide biosynthetic process;0.0053823560704218!GO:0044452;nucleolar part;0.0053823560704218!GO:0006595;polyamine metabolic process;0.0053823560704218!GO:0006275;regulation of DNA replication;0.00543357993504919!GO:0008180;signalosome;0.00554408235309794!GO:0030176;integral to endoplasmic reticulum membrane;0.0057597270634471!GO:0006284;base-excision repair;0.00586512338490288!GO:0000096;sulfur amino acid metabolic process;0.0061624081256702!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00645006652220621!GO:0006891;intra-Golgi vesicle-mediated transport;0.00651727048343981!GO:0043241;protein complex disassembly;0.00651727048343981!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00657444709465179!GO:0045047;protein targeting to ER;0.00657444709465179!GO:0007050;cell cycle arrest;0.00668529804271303!GO:0016197;endosome transport;0.00668529804271303!GO:0030663;COPI coated vesicle membrane;0.00673270068167441!GO:0030126;COPI vesicle coat;0.00673270068167441!GO:0006401;RNA catabolic process;0.00683679352636715!GO:0030119;AP-type membrane coat adaptor complex;0.00728137262997313!GO:0016251;general RNA polymerase II transcription factor activity;0.00730803965961773!GO:0008286;insulin receptor signaling pathway;0.00737830722383922!GO:0007346;regulation of progression through mitotic cell cycle;0.00741744747572633!GO:0008017;microtubule binding;0.00746594945108051!GO:0016584;nucleosome positioning;0.00760414513804246!GO:0006405;RNA export from nucleus;0.00766597768081353!GO:0045449;regulation of transcription;0.00797911649470367!GO:0044262;cellular carbohydrate metabolic process;0.00802209197432603!GO:0030134;ER to Golgi transport vesicle;0.00802209197432603!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00807216138229005!GO:0003746;translation elongation factor activity;0.00809862782662744!GO:0009112;nucleobase metabolic process;0.00843888985391994!GO:0048522;positive regulation of cellular process;0.00843888985391994!GO:0006091;generation of precursor metabolites and energy;0.00886219188226812!GO:0046483;heterocycle metabolic process;0.00892549181587852!GO:0043596;nuclear replication fork;0.00893095001569143!GO:0044454;nuclear chromosome part;0.0089337186200594!GO:0000209;protein polyubiquitination;0.00901016068334478!GO:0008033;tRNA processing;0.00925552105671477!GO:0045941;positive regulation of transcription;0.00934945145931653!GO:0030660;Golgi-associated vesicle membrane;0.00940122814134705!GO:0051087;chaperone binding;0.00940122814134705!GO:0005832;chaperonin-containing T-complex;0.00940122814134705!GO:0051287;NAD binding;0.00944292244465816!GO:0030137;COPI-coated vesicle;0.00955581832886574!GO:0007264;small GTPase mediated signal transduction;0.00995124870015192!GO:0030131;clathrin adaptor complex;0.0100092245016614!GO:0046467;membrane lipid biosynthetic process;0.0102075318996729!GO:0051539;4 iron, 4 sulfur cluster binding;0.0102732678266658!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0102951291244854!GO:0006289;nucleotide-excision repair;0.0102951291244854!GO:0015992;proton transport;0.0104847721526292!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0107614638950927!GO:0006818;hydrogen transport;0.0108707563752459!GO:0005869;dynactin complex;0.010900589742148!GO:0006007;glucose catabolic process;0.0109296572110763!GO:0005862;muscle thin filament tropomyosin;0.0110641488378337!GO:0051270;regulation of cell motility;0.0111301173834973!GO:0004527;exonuclease activity;0.0113196003889358!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0113523076703808!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0114174454929219!GO:0000428;DNA-directed RNA polymerase complex;0.0114174454929219!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0114716911153504!GO:0055083;monovalent inorganic anion homeostasis;0.0114716911153504!GO:0055064;chloride ion homeostasis;0.0114716911153504!GO:0030644;cellular chloride ion homeostasis;0.0114716911153504!GO:0000049;tRNA binding;0.0115835603888514!GO:0050681;androgen receptor binding;0.0118096449474438!GO:0006378;mRNA polyadenylation;0.0118335247558663!GO:0008629;induction of apoptosis by intracellular signals;0.0118335247558663!GO:0030127;COPII vesicle coat;0.0118432905292981!GO:0012507;ER to Golgi transport vesicle membrane;0.0118432905292981!GO:0042770;DNA damage response, signal transduction;0.0119190887078712!GO:0006144;purine base metabolic process;0.0119216367951875!GO:0003711;transcription elongation regulator activity;0.0119680963805644!GO:0031123;RNA 3'-end processing;0.0121174437065398!GO:0051540;metal cluster binding;0.0121980606438555!GO:0051536;iron-sulfur cluster binding;0.0121980606438555!GO:0030032;lamellipodium biogenesis;0.0126036128913088!GO:0003779;actin binding;0.0128118859084758!GO:0030132;clathrin coat of coated pit;0.0128118859084758!GO:0000793;condensed chromosome;0.0129129187076973!GO:0016272;prefoldin complex;0.0129129187076973!GO:0031570;DNA integrity checkpoint;0.0130628101519064!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0131806020786727!GO:0004003;ATP-dependent DNA helicase activity;0.0134134660319818!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0136155005216623!GO:0007243;protein kinase cascade;0.0137085932390611!GO:0032259;methylation;0.0138327786554053!GO:0006730;one-carbon compound metabolic process;0.0138327786554053!GO:0043414;biopolymer methylation;0.0138327786554053!GO:0005758;mitochondrial intermembrane space;0.0139049791246569!GO:0051656;establishment of organelle localization;0.0139910242065579!GO:0016408;C-acyltransferase activity;0.0139910242065579!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0141498470992651!GO:0031577;spindle checkpoint;0.0141903149444369!GO:0030145;manganese ion binding;0.0142031210312875!GO:0043022;ribosome binding;0.0143374560232095!GO:0008610;lipid biosynthetic process;0.014377962303682!GO:0046489;phosphoinositide biosynthetic process;0.014377962303682!GO:0006270;DNA replication initiation;0.0156510550287959!GO:0000118;histone deacetylase complex;0.0157115814727351!GO:0008047;enzyme activator activity;0.0159895469509036!GO:0006509;membrane protein ectodomain proteolysis;0.0163785464960944!GO:0033619;membrane protein proteolysis;0.0163785464960944!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0170786537485258!GO:0001725;stress fiber;0.0171253168506881!GO:0032432;actin filament bundle;0.0171253168506881!GO:0000725;recombinational repair;0.0173454585400244!GO:0000724;double-strand break repair via homologous recombination;0.0173454585400244!GO:0006720;isoprenoid metabolic process;0.0175517689006438!GO:0031529;ruffle organization and biogenesis;0.0181876125426415!GO:0030496;midbody;0.0187357747975289!GO:0000339;RNA cap binding;0.0190276094307844!GO:0006607;NLS-bearing substrate import into nucleus;0.0191099958954338!GO:0065009;regulation of a molecular function;0.019280868097162!GO:0031970;organelle envelope lumen;0.020073500202547!GO:0031902;late endosome membrane;0.0202720280134771!GO:0043130;ubiquitin binding;0.0208897190404858!GO:0032182;small conjugating protein binding;0.0208897190404858!GO:0000152;nuclear ubiquitin ligase complex;0.0208897190404858!GO:0031901;early endosome membrane;0.0209285038963335!GO:0006376;mRNA splice site selection;0.0211991885155961!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0211991885155961!GO:0030518;steroid hormone receptor signaling pathway;0.0220109892377341!GO:0032200;telomere organization and biogenesis;0.0220290653880612!GO:0000723;telomere maintenance;0.0220290653880612!GO:0007021;tubulin folding;0.0220989543084489!GO:0005669;transcription factor TFIID complex;0.0231630864668605!GO:0006220;pyrimidine nucleotide metabolic process;0.0232660843648206!GO:0043492;ATPase activity, coupled to movement of substances;0.0235271610544194!GO:0046128;purine ribonucleoside metabolic process;0.0248407970990407!GO:0042278;purine nucleoside metabolic process;0.0248407970990407!GO:0051101;regulation of DNA binding;0.0251666479573827!GO:0000781;chromosome, telomeric region;0.0251666479573827!GO:0000178;exosome (RNase complex);0.0251666479573827!GO:0007018;microtubule-based movement;0.0252244734970441!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.025241539586216!GO:0015002;heme-copper terminal oxidase activity;0.025241539586216!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.025241539586216!GO:0004129;cytochrome-c oxidase activity;0.025241539586216!GO:0006740;NADPH regeneration;0.0258332058833095!GO:0006098;pentose-phosphate shunt;0.0258332058833095!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0258633422283508!GO:0005773;vacuole;0.0266117470730693!GO:0050662;coenzyme binding;0.0270129013584774!GO:0040011;locomotion;0.02761221384507!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0283092203363789!GO:0043621;protein self-association;0.0286125254529277!GO:0005784;translocon complex;0.0286125254529277!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0289652450718546!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0290585816794232!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0291757814996131!GO:0008276;protein methyltransferase activity;0.0299335728673005!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0302980701755178!GO:0005652;nuclear lamina;0.0307068694481889!GO:0031371;ubiquitin conjugating enzyme complex;0.030762392227919!GO:0035267;NuA4 histone acetyltransferase complex;0.0309606862486054!GO:0008143;poly(A) binding;0.0310610951747986!GO:0033673;negative regulation of kinase activity;0.0319817547555091!GO:0006469;negative regulation of protein kinase activity;0.0319817547555091!GO:0022411;cellular component disassembly;0.0323491173354196!GO:0005663;DNA replication factor C complex;0.032707269818709!GO:0045045;secretory pathway;0.0329084762507411!GO:0016585;chromatin remodeling complex;0.0332318610200432!GO:0040029;regulation of gene expression, epigenetic;0.0337286566620511!GO:0043189;H4/H2A histone acetyltransferase complex;0.0337286566620511!GO:0006355;regulation of transcription, DNA-dependent;0.0340244307326431!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0341231591979114!GO:0030659;cytoplasmic vesicle membrane;0.0345738891749318!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0349887713866317!GO:0033043;regulation of organelle organization and biogenesis;0.0349887713866317!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0351499748160737!GO:0043601;nuclear replisome;0.0353489723274161!GO:0030894;replisome;0.0353489723274161!GO:0005881;cytoplasmic microtubule;0.0354428341279357!GO:0009303;rRNA transcription;0.0354428341279357!GO:0008538;proteasome activator activity;0.0355305514362817!GO:0003702;RNA polymerase II transcription factor activity;0.0357344616183702!GO:0051348;negative regulation of transferase activity;0.0357344616183702!GO:0008536;Ran GTPase binding;0.0357346162781155!GO:0004523;ribonuclease H activity;0.0357996000130065!GO:0006778;porphyrin metabolic process;0.0359033562863308!GO:0033013;tetrapyrrole metabolic process;0.0359033562863308!GO:0000077;DNA damage checkpoint;0.0359951662659221!GO:0007004;telomere maintenance via telomerase;0.0359951662659221!GO:0000123;histone acetyltransferase complex;0.0361942275256593!GO:0030911;TPR domain binding;0.0367165680579755!GO:0006892;post-Golgi vesicle-mediated transport;0.0376036320217312!GO:0040012;regulation of locomotion;0.0376632677370589!GO:0016301;kinase activity;0.0377629940121993!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0381024676794662!GO:0046112;nucleobase biosynthetic process;0.0385443280203852!GO:0030384;phosphoinositide metabolic process;0.0385554206497848!GO:0006650;glycerophospholipid metabolic process;0.039269961571093!GO:0006779;porphyrin biosynthetic process;0.0392704994396601!GO:0033014;tetrapyrrole biosynthetic process;0.0392704994396601!GO:0007265;Ras protein signal transduction;0.0397615737167007!GO:0005680;anaphase-promoting complex;0.0398046649148925!GO:0051098;regulation of binding;0.0398145894927913!GO:0051338;regulation of transferase activity;0.040159418662189!GO:0008154;actin polymerization and/or depolymerization;0.0402014673792032!GO:0007033;vacuole organization and biogenesis;0.0413934853622367!GO:0050178;phenylpyruvate tautomerase activity;0.0417586937948929!GO:0032906;transforming growth factor-beta2 production;0.0420554971348888!GO:0032909;regulation of transforming growth factor-beta2 production;0.0420554971348888!GO:0000084;S phase of mitotic cell cycle;0.0420602165386864!GO:0030125;clathrin vesicle coat;0.0421497489663648!GO:0030665;clathrin coated vesicle membrane;0.0421497489663648!GO:0017134;fibroblast growth factor binding;0.0421710427861955!GO:0042026;protein refolding;0.0421710427861955!GO:0005938;cell cortex;0.0429935380906378!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0430852657143541!GO:0000086;G2/M transition of mitotic cell cycle;0.043448651956044!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0440273226541307!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0440423365287083!GO:0031625;ubiquitin protein ligase binding;0.044096708097669!GO:0007034;vacuolar transport;0.0442305387628051!GO:0006367;transcription initiation from RNA polymerase II promoter;0.044266259738377!GO:0006672;ceramide metabolic process;0.044266259738377!GO:0019783;small conjugating protein-specific protease activity;0.0449140084883033!GO:0008287;protein serine/threonine phosphatase complex;0.0450281830400659!GO:0030508;thiol-disulfide exchange intermediate activity;0.0450492882869276!GO:0004448;isocitrate dehydrogenase activity;0.0450808219630236!GO:0019752;carboxylic acid metabolic process;0.0451775662244457!GO:0003756;protein disulfide isomerase activity;0.0454920080311456!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0454920080311456!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.045784672156181!GO:0006082;organic acid metabolic process;0.0463421182986277!GO:0022415;viral reproductive process;0.0466610021851596!GO:0008097;5S rRNA binding;0.0466727547028456!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0469393284054327!GO:0046822;regulation of nucleocytoplasmic transport;0.0481295163452465!GO:0001952;regulation of cell-matrix adhesion;0.0491322680677125!GO:0031575;G1/S transition checkpoint;0.0494954711323559!GO:0000097;sulfur amino acid biosynthetic process;0.0494954711323559
|sample_id=11316
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cerebral cortex
|top_motifs=GFI1:2.29787809949;OCT4_SOX2{dimer}:2.2923294536;TFDP1:2.07086928786;ZIC1..3:1.93782076417;NKX6-1,2:1.76988719574;SOX{8,9,10}:1.71736708113;SOX2:1.6347433474;NFY{A,B,C}:1.58254879865;E2F1..5:1.57105051273;PBX1:1.55148129711;NKX2-3_NKX2-5:1.4431777905;POU5F1:1.39351491426;MZF1:1.36913434015;PAX6:1.35076107548;PAX1,9:1.29520127881;SOX17:1.23126802532;ZNF384:1.20262754332;CDX1,2,4:1.14944257405;XCPE1{core}:1.14615383272;POU1F1:1.14103117061;GCM1,2:1.13693968363;FOXP1:1.12413329002;GTF2A1,2:1.06073171339;PITX1..3:1.04700853717;NKX2-1,4:1.01878531355;POU3F1..4:0.998653419383;ONECUT1,2:0.993474148364;CDC5L:0.989928087803;RBPJ:0.971893361052;MTE{core}:0.952343367976;LHX3,4:0.911547524175;EVI1:0.900497658897;GFI1B:0.894912369417;VSX1,2:0.886778068415;AIRE:0.879078750487;GATA4:0.860689860556;UFEwm:0.837841064895;ZNF143:0.82139835445;NRF1:0.820364944502;HOXA9_MEIS1:0.81633198365;TOPORS:0.806996490612;PAX5:0.802622813037;SP1:0.781737272765;TFAP2B:0.772140618596;HOX{A4,D4}:0.771640763603;ALX1:0.769699548595;MYB:0.766329517363;NR6A1:0.747868386326;T:0.744334240814;LEF1_TCF7_TCF7L1,2:0.744062354195;HIC1:0.714218618683;BREu{core}:0.691366013491;ZFP161:0.684864631991;NR3C1:0.681887651465;KLF4:0.673468789078;MAZ:0.659635855681;NANOG:0.654834202878;STAT1,3:0.636639575427;CUX2:0.628106844583;NKX2-2,8:0.621293628081;EGR1..3:0.608240748338;POU2F1..3:0.596017964591;PRRX1,2:0.580039573393;GTF2I:0.569776945454;LMO2:0.521075313848;ELK1,4_GABP{A,B1}:0.511338907626;IKZF2:0.475851599161;ZBTB6:0.448495554335;JUN:0.434700019762;RREB1:0.361791301283;TFAP2{A,C}:0.360625688403;NKX3-2:0.360257368974;YY1:0.355105849993;TLX1..3_NFIC{dimer}:0.350996523101;TEAD1:0.349034767939;FOXD3:0.33745524063;PAX4:0.323722293246;RXR{A,B,G}:0.319149153857;PATZ1:0.301913614171;EN1,2:0.291525163439;HBP1_HMGB_SSRP1_UBTF:0.284193653217;HSF1,2:0.244786334754;ALX4:0.241977920568;PRDM1:0.229848774348;TEF:0.229576145109;STAT5{A,B}:0.173121106654;NR1H4:0.153466679962;RFX1:0.142896880737;NFE2L2:0.139750153976;MED-1{core}:0.13066201668;MYOD1:0.0879109961919;EBF1:0.0818614617653;NFE2L1:0.0782754852801;HMGA1,2:0.0652279453104;GZF1:0.0593924130038;ZBTB16:0.0542786299672;HMX1:0.0526985471877;CRX:0.00215404705471;NFIX:-0.0345655297878;FOXP3:-0.0392865583702;FOXM1:-0.0686440371467;FOS_FOS{B,L1}_JUN{B,D}:-0.0709933121216;MYFfamily:-0.0775825680162;TBX4,5:-0.0833081636673;NANOG{mouse}:-0.0982834076044;PAX8:-0.101773140081;BACH2:-0.115944605592;TFAP4:-0.122389845838;IKZF1:-0.128689560502;HNF4A_NR2F1,2:-0.132775544617;HNF1A:-0.147431937014;NHLH1,2:-0.154851434369;STAT2,4,6:-0.163429531525;SMAD1..7,9:-0.167453210129;TP53:-0.168659647102;MYBL2:-0.171184695525;HOX{A5,B5}:-0.171196378187;SRF:-0.172646993078;DMAP1_NCOR{1,2}_SMARC:-0.175367502092;TGIF1:-0.221155318061;ATF4:-0.224031419256;DBP:-0.26533335795;CREB1:-0.267519102029;SOX5:-0.272157939476;NKX3-1:-0.278325084749;SPZ1:-0.285101826579;ARID5B:-0.295590079383;TBP:-0.305080733016;FOXL1:-0.322306532;REST:-0.333140110263;NFE2:-0.338854790303;FOXN1:-0.357734591596;MEF2{A,B,C,D}:-0.374144714094;PAX3,7:-0.376643354329;PDX1:-0.382678547177;RUNX1..3:-0.388995893325;FOSL2:-0.389560499219;AR:-0.401705400428;RFX2..5_RFXANK_RFXAP:-0.406186137317;ZNF148:-0.412958937185;EP300:-0.417046550856;TFCP2:-0.423833202024;MTF1:-0.428832338476;POU6F1:-0.497795368876;NFATC1..3:-0.498981832754;SPIB:-0.506135747112;NFKB1_REL_RELA:-0.521006592843;IRF1,2:-0.541783343833;BPTF:-0.561225501597;ATF2:-0.568908953393;ZNF423:-0.569776651838;XBP1:-0.608165091425;HAND1,2:-0.617086395294;SNAI1..3:-0.619708151123;ADNP_IRX_SIX_ZHX:-0.625580521069;NFIL3:-0.644003172835;SPI1:-0.659709922092;HOX{A6,A7,B6,B7}:-0.692621973463;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.701404134118;ESRRA:-0.707021413713;ELF1,2,4:-0.721611138904;GATA6:-0.747221728193;ATF5_CREB3:-0.752302378904;ZEB1:-0.757299666777;IRF7:-0.823015431822;FOXO1,3,4:-0.845858937619;AHR_ARNT_ARNT2:-0.855599587449;ESR1:-0.871443778399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.872825576468;MAFB:-0.893359671682;PPARG:-0.903392763411;CEBPA,B_DDIT3:-0.911360548443;FOXA2:-0.924157662634;RORA:-0.931851502093;ETS1,2:-0.939012276021;NR5A1,2:-0.939571736886;HLF:-0.947003665086;FOXQ1:-0.968108977992;FOX{F1,F2,J1}:-1.00532409858;GLI1..3:-1.02917689144;PAX2:-1.03327455625;SREBF1,2:-1.08592551924;RXRA_VDR{dimer}:-1.15077668342;FOX{D1,D2}:-1.1766138582;HES1:-1.20223498683;bHLH_family:-1.2921510116;TAL1_TCF{3,4,12}:-1.29818035812;HIF1A:-1.30285001045;ZNF238:-1.42965822822;ATF6:-1.48188467416;FOX{I1,J2}:-1.48315626766;TLX2:-1.53891244336
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11316-117D2;search_select_hide=table117:FF:11316-117D2
}}
}}

Latest revision as of 16:32, 3 June 2020

Name:Astrocyte - cerebral cortex, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11960
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebral cortex
dev stagefetus
sexunknown
agefetal
cell typeastrocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1091
catalog numberSC1805
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005749
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11960 CAGE DRX008116 DRR008988
Accession ID Hg19

Library idBAMCTSS
CNhs11960 DRZ000413 DRZ001798
Accession ID Hg38

Library idBAMCTSS
CNhs11960 DRZ011763 DRZ013148
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005749
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.CTTGTA sRNA-Seq DRX037077 DRR041443
Accession ID Hg19

Library idBAMCTSS
SRhi10006.CTTGTA DRZ007085


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.051
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.62
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0138
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.105
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0125
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0444
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0123
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0403
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.105
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.169
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0557
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.242
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0557
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.659
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0101
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.149
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.627
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.475
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0557
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.349
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.26
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.105
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0557
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11960

Jaspar motifP-value
MA0002.20.00144
MA0003.10.0553
MA0004.10.138
MA0006.10.617
MA0007.10.323
MA0009.10.175
MA0014.10.691
MA0017.10.00203
MA0018.20.899
MA0019.10.95
MA0024.11.1598e-5
MA0025.10.26
MA0027.10.152
MA0028.10.547
MA0029.10.298
MA0030.10.0432
MA0031.10.00163
MA0035.20.0415
MA0038.12.09924e-4
MA0039.20.69
MA0040.10.0545
MA0041.10.185
MA0042.10.134
MA0043.10.188
MA0046.10.655
MA0047.22.49518e-6
MA0048.10.13
MA0050.10.00248
MA0051.10.0269
MA0052.10.00329
MA0055.10.364
MA0057.10.41
MA0058.10.0622
MA0059.10.0713
MA0060.12.22923e-12
MA0061.10.00373
MA0062.20.307
MA0065.20.00203
MA0066.10.101
MA0067.10.274
MA0068.13.44487e-4
MA0069.10.888
MA0070.10.0362
MA0071.10.179
MA0072.10.195
MA0073.10.962
MA0074.10.556
MA0076.10.538
MA0077.10.0521
MA0078.10.899
MA0079.20.646
MA0080.23.73574e-15
MA0081.10.0394
MA0083.10.665
MA0084.10.938
MA0087.10.478
MA0088.10.389
MA0090.10.54
MA0091.10.00781
MA0092.10.329
MA0093.10.141
MA0099.22.16226e-5
MA0100.10.432
MA0101.10.0293
MA0102.20.00552
MA0103.10.038
MA0104.20.134
MA0105.11.04805e-4
MA0106.10.121
MA0107.10.00631
MA0108.20.774
MA0111.10.617
MA0112.23.71629e-5
MA0113.10.136
MA0114.10.0381
MA0115.10.875
MA0116.16.7773e-4
MA0117.10.663
MA0119.10.373
MA0122.10.679
MA0124.10.742
MA0125.10.0249
MA0131.10.552
MA0135.10.532
MA0136.11.17798e-14
MA0137.20.167
MA0138.20.18
MA0139.10.0876
MA0140.10.024
MA0141.10.0654
MA0142.10.00376
MA0143.10.0654
MA0144.10.0404
MA0145.10.198
MA0146.10.147
MA0147.10.125
MA0148.12.04088e-4
MA0149.10.0318
MA0150.10.00145
MA0152.10.203
MA0153.10.765
MA0154.10.00258
MA0155.10.392
MA0156.11.77455e-6
MA0157.10.00402
MA0159.10.00632
MA0160.10.0233
MA0162.10.556
MA0163.11.84847e-6
MA0164.10.88
MA0258.10.00725
MA0259.10.51



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11960

Novel motifP-value
10.0953
100.15
1000.938
1010.726
1020.763
1030.106
1040.501
1050.504
1060.0327
1070.756
1080.479
1090.0212
110.0774
1100.278
1110.0569
1120.0178
1130.209
1140.00601
1150.504
1160.928
1170.207
1180.336
1190.213
120.536
1200.863
1210.804
1220.25
1230.543
1240.283
1250.89
1260.14
1270.112
1280.308
1290.124
130.321
1300.154
1310.8
1320.842
1330.701
1340.868
1350.0192
1360.847
1370.155
1380.0614
1390.00269
140.757
1400.313
1410.209
1420.811
1430.00401
1440.906
1450.699
1460.609
1470.872
1480.0987
1490.0953
150.101
1500.532
1510.262
1520.0865
1530.304
1540.736
1550.178
1560.523
1570.154
1580.086
1590.608
160.266
1600.251
1610.811
1620.585
1630.514
1640.0652
1650.369
1660.407
1670.854
1680.473
1690.00796
170.0921
180.0939
190.368
20.424
200.829
210.797
220.202
230.0542
240.527
250.451
260.531
270.152
280.868
290.253
30.0994
300.793
310.638
320.0837
330.533
340.553
350.313
360.0904
370.0438
380.186
390.851
40.605
400.165
410.186
420.279
430.102
440.471
450.406
460.1
470.215
480.26
490.0964
50.108
500.654
510.26
520.505
530.48
540.237
550.211
560.507
570.534
580.101
590.0866
60.944
600.0761
610.215
620.0642
630.216
640.433
650.0598
660.522
670.721
680.229
690.996
70.34
700.0147
710.0705
720.186
730.0622
740.679
750.0486
760.419
770.152
780.33
790.249
80.268
800.187
810.464
820.0181
830.934
840.437
850.0201
860.218
870.924
880.858
890.142
90.21
900.305
910.879
920.0254
930.014
940.0519
950.0637
960.172
970.519
980.243
990.708



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11960


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002605 (astrocyte of the cerebral cortex)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000194 (human astrocyte of the cerebral cortex sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

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