FF:11318-117D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005390 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005390 | ||
|accession_numbers=CAGE;DRX008261;DRR009133;DRZ000558;DRZ001943;DRZ011908;DRZ013293 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037236;DRR041602;DRZ007244 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!2.05!3098.62!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.85!251.69!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.79!60.19!PAX9;;chr1:170633348..170633399,+!p2@PRRX1!1.70!65.35!PRRX1;;chr16:86544113..86544145,+!p1@FOXF1!1.69!59.21!FOXF1;;chr12:66218255..66218304,+!p3@HMGA2!1.65!112.76!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.64!54.05!TFAP2C;;chr9:96717629..96717644,-!p1@BARX1!1.63!41.89!BARX1;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.94!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.59!169.27!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.54!45.33!FOXF2;;chr4:4861385..4861398,+!p1@MSX1!1.50!87.21!MSX1;;chr2:45236540..45236577,-!p1@SIX2!1.48!29.11!SIX2;;chr7:19157248..19157268,-!p1@TWIST1!1.45!73.09!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!1.41!41.27!TCF12;;chr6:134210243..134210257,+!p1@TCF21!1.41!24.69!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.38!23.09!MKX;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.06!HMGA2;;chr14:37126765..37126799,+!p2@PAX9!1.31!19.28!PAX9;;chr12:66218183..66218209,+!p4@HMGA2!1.30!35.99!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.27!20.02!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.24!149.24!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.23!38.94!FOXC2;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.13!PRDM8;;chr11:65667884..65667895,-!p2@FOSL1!1.22!60.43!FOSL1;;chr14:61116168..61116180,-!p2@SIX1!1.21!17.32!SIX1;;chr17:59477233..59477263,+!p1@TBX2!1.20!45.57!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.15!35.87!OSR1;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.14!SOX11;;chr9:132427883..132427951,+!p2@PRRX2!1.15!13.14!PRRX2;;chr20:42543441..42543497,+!p1@TOX2!1.13!56.38!TOX2;;chr12:66218573..66218596,+!p7@HMGA2!1.12!18.06!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.10!37.71!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.14!PRRX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.04!10.07!POU3F3;;chr20:42543506..42543549,+!p2@TOX2!1.03!23.71!TOX2;;chr2:200322654..200322707,-!p2@SATB2!1.03!14.37!SATB2;;chr7:14029283..14029311,-!p1@ETV1!1.02!51.84!ETV1;;chr2:239756739..239756755,+!p2@TWIST2!1.01!16.09!TWIST2;;chr2:172949484..172949522,+!p1@DLX1!1.01!9.21!DLX1;;chr9:102584262..102584276,+!p1@NR4A3!1.00!20.51!NR4A3;;chr12:66358080..66358094,+!p15@HMGA2!0.99!8.84!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.99!8.72!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!0.97!14.62!DRAP1;;chr19:46801639..46801699,+!p1@HIF3A!0.97!8.35!HIF3A;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.64!DRAP1;;chr9:102584159..102584174,+!p2@NR4A3!0.95!14.37!NR4A3;;chr2:95963052..95963106,+!p1@KCNIP3!0.95!7.98!KCNIP3;;chr17:41622731..41622764,-!p5@ETV4!0.95!7.98!ETV4;;chr5:72744594..72744609,-!p1@FOXD1!0.94!36.24!FOXD1;;chr11:65667846..65667868,-!p1@FOSL1!0.93!205.38!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.93!11.55!ETV4;;chr12:115122318..115122331,-!p2@TBX3!0.93!7.49!TBX3;;chr6:1389824..1389840,+!p3@FOXF2!0.93!7.49!FOXF2;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.53!TFAP2A;;chr7:14028488..14028516,-!p2@ETV1!0.91!7.86!ETV1;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.12!KDM5D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.37!GLIS1;;chr12:85673977..85674015,+!p1@ALX1!0.90!6.88!ALX1;;chr9:77112244..77112262,+!p1@RORB!0.89!7.74!RORB;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.74!CREB3L1;;chr5:321810..321877,+!p1@AHRR!0.88!21.99!AHRR;;chr17:59477197..59477212,+!p2@TBX2!0.88!11.55!TBX2;;chr17:59477275..59477286,+!p3@TBX2!0.88!8.84!TBX2;;chr6:10415276..10415341,-!p2@TFAP2A!0.88!8.11!TFAP2A;;chr12:66218420..66218439,+!p12@HMGA2!0.88!6.63!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.88!6.63!HMGA2;;chr14:37126814..37126834,+!p4@PAX9!0.86!6.26!PAX9;;chr6:34204973..34204990,+!p4@HMGA1!0.85!85.62!HMGA1;;chr12:66218378..66218401,+!p6@HMGA2!0.85!9.70!HMGA2;;chr3:141105705..141105770,+!p4@ZBTB38!0.85!7.49!ZBTB38;;chr4:299227..299272,-!p1@ZNF732!0.85!6.14!ZNF732;;chr2:172950227..172950249,+!p2@DLX1!0.85!6.02!DLX1;;chr4:26322267..26322334,+!p3@RBPJ!0.83!14.62!RBPJ;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.77!ZFY;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.77!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.81!659.13!HMGA1;;chr14:73360799..73360817,-!p1@DPF3!0.80!19.53!DPF3;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.46!CREB3L1;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.85!MXD3;;chr12:66218152..66218174,+!p10@HMGA2!0.78!5.40!HMGA2;;chr2:223163706..223163730,-!p1@PAX3!0.78!5.04!PAX3;;chr7:19157043..19157088,-!p2@TWIST1!0.77!13.02!TWIST1;;chr9:102584128..102584144,+!p3@NR4A3!0.77!9.83!NR4A3;;chr15:57511589..57511608,+!p4@TCF12!0.77!4.91!TCF12;;chr2:96012397..96012417,+!p3@KCNIP3!0.75!4.67!KCNIP3;;chr1:75602043..75602093,+!p1@LHX8!0.75!4.67!LHX8;;chr2:102091566..102091581,-!p1@RFX8!0.74!4.54!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.74!4.54!SIX2;;chr17:41623692..41623715,-!p1@ETV4!0.73!20.64!ETV4;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.74!FOXD1;;chr17:41623009..41623053,-!p4@ETV4!0.73!7.37!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.73!5.16!BNC1;;c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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 34: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11318-117D4 | |id=FF:11318-117D4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000063 | ||
|is_obsolete= | |||
|library_id=CNhs11961 | |||
|library_id_phase_based=2:CNhs11961 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11318 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.AGTCAA.11318 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11318 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.AGTCAA.11318 | |||
|name=Fibroblast - Gingival, donor2 | |name=Fibroblast - Gingival, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 41: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11961,LSID836,release011,COMPLETED | |profile_hcage=CNhs11961,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0649155008401676,0,-0.0694124338180944,0.00422743820760335,0,0,0,0,0,0,0,0,0,0,0,0.0503156775564332,0,0.170034062061645,0,0.0251578387782166,0,0,0,-0.00255536702183901,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0157788192390232,0,0,0,0,0,0,0,0,0.0234862435102749,0,0,0,0.506642701092527,0,0.0224212358580788,0,-0.0969923612426051,0,0,0.0389021113308758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0118966943612218,0.0340551615981899,0.148625714708146,0,0,-0.0799839738539042,0.0408118002959941,0,0.136245738543973,0,0.0503156775564332,0.0755405199878837,-0.0451964927506924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0398721446215119,0.17357587122559,0,0,-0.0263941514171957,-0.128092870494113,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC2625 | |rna_catalog_number=SC2625 | ||
| Line 55: | Line 82: | ||
|rna_tube_id=117D4 | |rna_tube_id=117D4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.AGTCAA | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 68: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.66720299124377e-273!GO:0043226;organelle;2.21890194791952e-218!GO:0043229;intracellular organelle;4.01376131275483e-218!GO:0043231;intracellular membrane-bound organelle;1.23283232245791e-215!GO:0043227;membrane-bound organelle;3.23356218326502e-215!GO:0005737;cytoplasm;2.23653617374928e-196!GO:0044422;organelle part;3.08513340663227e-163!GO:0044446;intracellular organelle part;7.55143862260233e-162!GO:0044444;cytoplasmic part;4.69325000760478e-136!GO:0032991;macromolecular complex;3.45308353032157e-113!GO:0030529;ribonucleoprotein complex;8.52610416058421e-98!GO:0044237;cellular metabolic process;4.4628585303988e-97!GO:0044238;primary metabolic process;6.90923067308619e-97!GO:0005634;nucleus;5.12085457669901e-96!GO:0043170;macromolecule metabolic process;2.85044072129508e-88!GO:0044428;nuclear part;1.34119909621695e-82!GO:0043233;organelle lumen;2.17505463188175e-80!GO:0031974;membrane-enclosed lumen;2.17505463188175e-80!GO:0003723;RNA binding;8.11974560008453e-77!GO:0005739;mitochondrion;1.40286954710967e-76!GO:0005515;protein binding;3.56504550713435e-73!GO:0005840;ribosome;1.05672717713327e-59!GO:0043234;protein complex;6.71896040528848e-57!GO:0016043;cellular component organization and biogenesis;5.67251534691639e-55!GO:0006412;translation;8.05320426391938e-53!GO:0006396;RNA processing;1.0053547953037e-52!GO:0043283;biopolymer metabolic process;4.34019837011414e-52!GO:0003735;structural constituent of ribosome;1.40422477275949e-51!GO:0044429;mitochondrial part;2.11217839434755e-50!GO:0031090;organelle membrane;4.44772435942664e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.7024660058296e-48!GO:0019538;protein metabolic process;3.13277109666766e-48!GO:0031981;nuclear lumen;3.52649141074001e-48!GO:0031967;organelle envelope;2.21036254610795e-46!GO:0031975;envelope;6.17951277212531e-46!GO:0010467;gene expression;2.01827261190224e-45!GO:0009058;biosynthetic process;2.05514783432285e-45!GO:0043228;non-membrane-bound organelle;8.93291812159699e-45!GO:0043232;intracellular non-membrane-bound organelle;8.93291812159699e-45!GO:0033279;ribosomal subunit;1.0691572624025e-44!GO:0033036;macromolecule localization;9.80306830326202e-43!GO:0044260;cellular macromolecule metabolic process;9.92651810117283e-43!GO:0015031;protein transport;1.11691894284702e-42!GO:0044267;cellular protein metabolic process;1.79111814432801e-42!GO:0044249;cellular biosynthetic process;2.94903298749646e-42!GO:0016071;mRNA metabolic process;3.7382696132768e-41!GO:0005829;cytosol;4.61708098924932e-41!GO:0006996;organelle organization and biogenesis;1.46658334757416e-40!GO:0009059;macromolecule biosynthetic process;3.21501186915628e-40!GO:0008104;protein localization;3.53847089193852e-39!GO:0045184;establishment of protein localization;3.5514837517148e-39!GO:0008380;RNA splicing;3.59183017217394e-38!GO:0006259;DNA metabolic process;6.0523955011665e-38!GO:0065003;macromolecular complex assembly;1.98969156119021e-36!GO:0006397;mRNA processing;2.57419746705883e-35!GO:0046907;intracellular transport;5.3829005753189e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.18195114577009e-33!GO:0022607;cellular component assembly;9.50996842696411e-33!GO:0007049;cell cycle;1.10713148914199e-32!GO:0005740;mitochondrial envelope;2.21595221210972e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.87783012555189e-32!GO:0031966;mitochondrial membrane;2.45672374699012e-30!GO:0019866;organelle inner membrane;3.02427872388682e-30!GO:0005654;nucleoplasm;1.04660702095048e-29!GO:0003676;nucleic acid binding;2.78752820987965e-29!GO:0006886;intracellular protein transport;1.1908542417181e-28!GO:0005743;mitochondrial inner membrane;5.72381714273033e-28!GO:0005681;spliceosome;3.31003449248553e-27!GO:0000166;nucleotide binding;6.18992681270935e-27!GO:0000278;mitotic cell cycle;4.98050538980533e-26!GO:0044445;cytosolic part;3.26585961717717e-25!GO:0022402;cell cycle process;6.52075007369044e-25!GO:0005694;chromosome;4.82683779856007e-24!GO:0044451;nucleoplasm part;6.7947834820979e-24!GO:0015935;small ribosomal subunit;5.3183667090549e-23!GO:0015934;large ribosomal subunit;8.53349623872239e-23!GO:0051649;establishment of cellular localization;1.40333824082721e-22!GO:0051641;cellular localization;1.58022737563766e-22!GO:0006119;oxidative phosphorylation;1.78179685694417e-22!GO:0016462;pyrophosphatase activity;2.60775218922631e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.56104357871714e-22!GO:0031980;mitochondrial lumen;3.56104357871714e-22!GO:0005759;mitochondrial matrix;3.56104357871714e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.85277027551725e-22!GO:0006974;response to DNA damage stimulus;6.77890415962408e-22!GO:0044427;chromosomal part;1.21653121688555e-21!GO:0017111;nucleoside-triphosphatase activity;1.90107799943591e-21!GO:0044455;mitochondrial membrane part;2.79708341092647e-21!GO:0000087;M phase of mitotic cell cycle;7.60652611516148e-21!GO:0007067;mitosis;1.68706719071586e-20!GO:0006457;protein folding;1.90666446573858e-20!GO:0022403;cell cycle phase;4.39564975632106e-20!GO:0016070;RNA metabolic process;6.14615325758047e-20!GO:0012505;endomembrane system;1.2222884274667e-19!GO:0032553;ribonucleotide binding;8.03195428686906e-19!GO:0032555;purine ribonucleotide binding;8.03195428686906e-19!GO:0005730;nucleolus;9.20272071242849e-19!GO:0016874;ligase activity;9.20272071242849e-19!GO:0017076;purine nucleotide binding;9.52302932869794e-19!GO:0022618;protein-RNA complex assembly;1.15689004423399e-18!GO:0048770;pigment granule;1.1648275693118e-18!GO:0042470;melanosome;1.1648275693118e-18!GO:0006281;DNA repair;1.23697859388791e-18!GO:0051301;cell division;2.55067742862984e-18!GO:0006512;ubiquitin cycle;1.06426423906829e-17!GO:0051186;cofactor metabolic process;1.19173921792481e-17!GO:0051276;chromosome organization and biogenesis;1.41063712426369e-17!GO:0005746;mitochondrial respiratory chain;1.42027565332019e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.11429985484847e-17!GO:0005761;mitochondrial ribosome;2.15054225879381e-17!GO:0000313;organellar ribosome;2.15054225879381e-17!GO:0005783;endoplasmic reticulum;5.69678148626813e-17!GO:0000279;M phase;5.84838594015096e-17!GO:0043285;biopolymer catabolic process;7.33538486812519e-17!GO:0044265;cellular macromolecule catabolic process;1.16916386517943e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.21190330273689e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.79589470654611e-16!GO:0008135;translation factor activity, nucleic acid binding;3.16663540142682e-16!GO:0005524;ATP binding;3.16663540142682e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.91882112361732e-16!GO:0006260;DNA replication;4.12317497442346e-16!GO:0019941;modification-dependent protein catabolic process;6.39290243730182e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.39290243730182e-16!GO:0006511;ubiquitin-dependent protein catabolic process;6.60375245102914e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.25591898551481e-16!GO:0003954;NADH dehydrogenase activity;7.25591898551481e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.25591898551481e-16!GO:0032559;adenyl ribonucleotide binding;7.66414640287186e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.21532336685496e-16!GO:0044257;cellular protein catabolic process;1.1656490746144e-15!GO:0030554;adenyl nucleotide binding;1.33417583785518e-15!GO:0009719;response to endogenous stimulus;1.41135176577896e-15!GO:0009057;macromolecule catabolic process;1.99185583131037e-15!GO:0042254;ribosome biogenesis and assembly;4.70515727715836e-15!GO:0008134;transcription factor binding;7.60454573422999e-15!GO:0005635;nuclear envelope;9.27472488523635e-15!GO:0030163;protein catabolic process;1.11262105726147e-14!GO:0044432;endoplasmic reticulum part;1.14149139753256e-14!GO:0006605;protein targeting;1.59004748377261e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.9519919692771e-14!GO:0000375;RNA splicing, via transesterification reactions;2.9519919692771e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.9519919692771e-14!GO:0031965;nuclear membrane;5.41595132044029e-14!GO:0044453;nuclear membrane part;5.6128535751749e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.6686510880439e-14!GO:0042773;ATP synthesis coupled electron transport;5.6686510880439e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.48324901097434e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.69617415409181e-14!GO:0045271;respiratory chain complex I;6.69617415409181e-14!GO:0005747;mitochondrial respiratory chain complex I;6.69617415409181e-14!GO:0044248;cellular catabolic process;9.44528318316535e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;9.46857106548098e-14!GO:0048193;Golgi vesicle transport;1.02795795778051e-13!GO:0006732;coenzyme metabolic process;1.49720817786089e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.85286798770862e-13!GO:0005794;Golgi apparatus;2.61735892549218e-13!GO:0006323;DNA packaging;3.86933507696021e-13!GO:0051082;unfolded protein binding;5.29439281055663e-13!GO:0003743;translation initiation factor activity;6.77569767583147e-13!GO:0043412;biopolymer modification;1.44063296043656e-12!GO:0016604;nuclear body;1.48326185668647e-12!GO:0000785;chromatin;3.28137367133426e-12!GO:0051726;regulation of cell cycle;3.81073090394291e-12!GO:0065004;protein-DNA complex assembly;4.33537416488922e-12!GO:0000074;regulation of progression through cell cycle;5.05446410481215e-12!GO:0009259;ribonucleotide metabolic process;6.57928774355956e-12!GO:0006413;translational initiation;6.70302919389289e-12!GO:0006333;chromatin assembly or disassembly;9.47072144471556e-12!GO:0006399;tRNA metabolic process;1.18356770340136e-11!GO:0005793;ER-Golgi intermediate compartment;1.83432133747935e-11!GO:0006163;purine nucleotide metabolic process;2.08234167543759e-11!GO:0016192;vesicle-mediated transport;2.61593288373502e-11!GO:0042623;ATPase activity, coupled;3.26058604964873e-11!GO:0005643;nuclear pore;3.95370519242487e-11!GO:0009055;electron carrier activity;4.17062984631501e-11!GO:0016887;ATPase activity;4.53961288190627e-11!GO:0006464;protein modification process;5.64692548184094e-11!GO:0015630;microtubule cytoskeleton;7.18807000850252e-11!GO:0009150;purine ribonucleotide metabolic process;8.56956734792126e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.09934177997173e-10!GO:0006913;nucleocytoplasmic transport;1.71689905084216e-10!GO:0006334;nucleosome assembly;1.87842385346328e-10!GO:0004386;helicase activity;2.93485849368541e-10!GO:0005789;endoplasmic reticulum membrane;3.17614976958083e-10!GO:0009260;ribonucleotide biosynthetic process;3.18343894169048e-10!GO:0006446;regulation of translational initiation;3.22198051193651e-10!GO:0006164;purine nucleotide biosynthetic process;3.40503262959236e-10!GO:0065002;intracellular protein transport across a membrane;3.53876480515702e-10!GO:0051169;nuclear transport;4.05302247973851e-10!GO:0006364;rRNA processing;5.65102107279093e-10!GO:0008565;protein transporter activity;6.7181895910151e-10!GO:0006461;protein complex assembly;7.99304587188737e-10!GO:0008639;small protein conjugating enzyme activity;8.08266793771177e-10!GO:0003712;transcription cofactor activity;9.72385880415245e-10!GO:0009199;ribonucleoside triphosphate metabolic process;9.83736879051103e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.88122727868525e-10!GO:0031497;chromatin assembly;1.01945923660942e-09!GO:0043687;post-translational protein modification;1.04820144149806e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.27098738819556e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.27098738819556e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.27098738819556e-09!GO:0009141;nucleoside triphosphate metabolic process;1.33147846539032e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.34476710832133e-09!GO:0016072;rRNA metabolic process;1.41726824521443e-09!GO:0004842;ubiquitin-protein ligase activity;1.73081659545667e-09!GO:0016607;nuclear speck;1.88960800398612e-09!GO:0050657;nucleic acid transport;2.10736921006901e-09!GO:0051236;establishment of RNA localization;2.10736921006901e-09!GO:0050658;RNA transport;2.10736921006901e-09!GO:0046930;pore complex;2.10750354942264e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.15971645754729e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.15971645754729e-09!GO:0006403;RNA localization;2.2996710578462e-09!GO:0043038;amino acid activation;2.34944033874947e-09!GO:0006418;tRNA aminoacylation for protein translation;2.34944033874947e-09!GO:0043039;tRNA aminoacylation;2.34944033874947e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.474838274124e-09!GO:0009060;aerobic respiration;2.86823187895129e-09!GO:0019787;small conjugating protein ligase activity;3.77827120990112e-09!GO:0051188;cofactor biosynthetic process;3.83950840389895e-09!GO:0005819;spindle;3.92942116707261e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.72858739065546e-09!GO:0000775;chromosome, pericentric region;5.21934586698815e-09!GO:0012501;programmed cell death;5.54496986999197e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.45896572469242e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.1783662948785e-09!GO:0006915;apoptosis;8.5107347710971e-09!GO:0008026;ATP-dependent helicase activity;9.80517028571303e-09!GO:0045333;cellular respiration;1.26775024202259e-08!GO:0003697;single-stranded DNA binding;1.33882341382386e-08!GO:0050794;regulation of cellular process;1.4155441085893e-08!GO:0043566;structure-specific DNA binding;1.77018234046602e-08!GO:0046034;ATP metabolic process;2.03055522368652e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.15028962448514e-08!GO:0017038;protein import;2.17455708652001e-08!GO:0009056;catabolic process;2.42148924922157e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.49304037730355e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.49304037730355e-08!GO:0016779;nucleotidyltransferase activity;3.99298917870812e-08!GO:0003924;GTPase activity;5.48947681335572e-08!GO:0015986;ATP synthesis coupled proton transport;5.93506705275117e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.93506705275117e-08!GO:0006366;transcription from RNA polymerase II promoter;6.03021559606607e-08!GO:0008219;cell death;6.73180231718871e-08!GO:0016265;death;6.73180231718871e-08!GO:0006099;tricarboxylic acid cycle;6.73180231718871e-08!GO:0046356;acetyl-CoA catabolic process;6.73180231718871e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.93071507960296e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.93071507960296e-08!GO:0016881;acid-amino acid ligase activity;7.98123632589608e-08!GO:0030120;vesicle coat;8.40102119678677e-08!GO:0030662;coated vesicle membrane;8.40102119678677e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.48065774862479e-08!GO:0007005;mitochondrion organization and biogenesis;1.05313077474541e-07!GO:0051028;mRNA transport;1.1411942099965e-07!GO:0016740;transferase activity;1.19005828794035e-07!GO:0019829;cation-transporting ATPase activity;1.19792949216081e-07!GO:0048475;coated membrane;1.19792949216081e-07!GO:0030117;membrane coat;1.19792949216081e-07!GO:0009117;nucleotide metabolic process;1.20382011523254e-07!GO:0006261;DNA-dependent DNA replication;1.32038181267458e-07!GO:0005813;centrosome;1.53266571862841e-07!GO:0048523;negative regulation of cellular process;1.58480337193766e-07!GO:0006084;acetyl-CoA metabolic process;1.75274752845434e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.78973252091009e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.11677332152497e-07!GO:0005667;transcription factor complex;2.37580426227325e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.91977969272e-07!GO:0009109;coenzyme catabolic process;3.0836967437527e-07!GO:0051329;interphase of mitotic cell cycle;3.50172183473715e-07!GO:0005815;microtubule organizing center;3.68036877862923e-07!GO:0009108;coenzyme biosynthetic process;3.78715660148236e-07!GO:0005768;endosome;4.54095870383316e-07!GO:0007051;spindle organization and biogenesis;5.09567546839103e-07!GO:0051246;regulation of protein metabolic process;5.24020956028171e-07!GO:0051187;cofactor catabolic process;6.60256384455709e-07!GO:0032446;protein modification by small protein conjugation;7.23320018903542e-07!GO:0006754;ATP biosynthetic process;7.47280015030313e-07!GO:0006753;nucleoside phosphate metabolic process;7.47280015030313e-07!GO:0016568;chromatin modification;9.41339483171605e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.04487328658059e-06!GO:0045259;proton-transporting ATP synthase complex;1.11667930352869e-06!GO:0005762;mitochondrial large ribosomal subunit;1.21090913813741e-06!GO:0000315;organellar large ribosomal subunit;1.21090913813741e-06!GO:0000245;spliceosome assembly;1.29243428168789e-06!GO:0016567;protein ubiquitination;1.3868129003375e-06!GO:0051325;interphase;1.43671044878401e-06!GO:0005788;endoplasmic reticulum lumen;1.52683508057431e-06!GO:0006752;group transfer coenzyme metabolic process;2.47571565527122e-06!GO:0003713;transcription coactivator activity;2.55790293045325e-06!GO:0043623;cellular protein complex assembly;2.88926017619141e-06!GO:0016491;oxidoreductase activity;2.88926017619141e-06!GO:0044431;Golgi apparatus part;3.14137112772291e-06!GO:0005657;replication fork;3.18976958449503e-06!GO:0048519;negative regulation of biological process;3.22039304835344e-06!GO:0000151;ubiquitin ligase complex;3.37991367526224e-06!GO:0005525;GTP binding;3.98853503154193e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.1404221508135e-06!GO:0008094;DNA-dependent ATPase activity;4.36420096850303e-06!GO:0000075;cell cycle checkpoint;4.76315029428624e-06!GO:0031324;negative regulation of cellular metabolic process;4.93706417781755e-06!GO:0003899;DNA-directed RNA polymerase activity;4.95510544453633e-06!GO:0016853;isomerase activity;5.32515780313665e-06!GO:0016859;cis-trans isomerase activity;6.69202155099893e-06!GO:0016563;transcription activator activity;6.69202155099893e-06!GO:0016126;sterol biosynthetic process;6.71124611257131e-06!GO:0007010;cytoskeleton organization and biogenesis;6.92448789357043e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.04230435478341e-06!GO:0000786;nucleosome;7.23498920143025e-06!GO:0004298;threonine endopeptidase activity;7.94804768306675e-06!GO:0006613;cotranslational protein targeting to membrane;8.11763596978912e-06!GO:0006793;phosphorus metabolic process;8.46467902195488e-06!GO:0006796;phosphate metabolic process;8.46467902195488e-06!GO:0051170;nuclear import;9.82402522189606e-06!GO:0008654;phospholipid biosynthetic process;1.04213859156615e-05!GO:0050789;regulation of biological process;1.12505626422262e-05!GO:0044440;endosomal part;1.35570468875928e-05!GO:0010008;endosome membrane;1.35570468875928e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.75714485020802e-05!GO:0003724;RNA helicase activity;1.76121050342361e-05!GO:0006916;anti-apoptosis;1.78471353765755e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.8367397507818e-05!GO:0016787;hydrolase activity;1.88900656813272e-05!GO:0006606;protein import into nucleus;1.89812826666753e-05!GO:0000314;organellar small ribosomal subunit;1.90696337000919e-05!GO:0005763;mitochondrial small ribosomal subunit;1.90696337000919e-05!GO:0005798;Golgi-associated vesicle;1.90849766263976e-05!GO:0042981;regulation of apoptosis;2.30581847678682e-05!GO:0009892;negative regulation of metabolic process;2.41145011919939e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.85292895601304e-05!GO:0043067;regulation of programmed cell death;2.89422943420566e-05!GO:0045786;negative regulation of progression through cell cycle;2.94229043790727e-05!GO:0045454;cell redox homeostasis;3.18754038614441e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.23046454358965e-05!GO:0000776;kinetochore;3.26883567096126e-05!GO:0051427;hormone receptor binding;3.3571395046287e-05!GO:0019843;rRNA binding;3.7131185966819e-05!GO:0043021;ribonucleoprotein binding;3.78068272200221e-05!GO:0006695;cholesterol biosynthetic process;4.04596074043208e-05!GO:0016310;phosphorylation;4.2077184297523e-05!GO:0031252;leading edge;4.38362169004888e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.39132218539451e-05!GO:0032561;guanyl ribonucleotide binding;4.55021367560436e-05!GO:0019001;guanyl nucleotide binding;4.55021367560436e-05!GO:0031988;membrane-bound vesicle;4.80595032130276e-05!GO:0043069;negative regulation of programmed cell death;5.11491332453042e-05!GO:0005770;late endosome;5.2897204576721e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.79383507307738e-05!GO:0005905;coated pit;6.43544228423529e-05!GO:0000139;Golgi membrane;6.478215892978e-05!GO:0043066;negative regulation of apoptosis;6.54873557806955e-05!GO:0035257;nuclear hormone receptor binding;7.3253867358215e-05!GO:0030867;rough endoplasmic reticulum membrane;8.31118424082035e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.79537573822761e-05!GO:0019899;enzyme binding;8.87994745291846e-05!GO:0007059;chromosome segregation;9.80594003432208e-05!GO:0019222;regulation of metabolic process;9.84707833718301e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000104792581444129!GO:0031968;organelle outer membrane;0.000108279003424008!GO:0006091;generation of precursor metabolites and energy;0.000113761416225087!GO:0019867;outer membrane;0.000120706012828886!GO:0031982;vesicle;0.000124528604605246!GO:0031410;cytoplasmic vesicle;0.000131800967085555!GO:0016363;nuclear matrix;0.000151967616938694!GO:0016481;negative regulation of transcription;0.000162003140069155!GO:0008361;regulation of cell size;0.000171506671255764!GO:0005769;early endosome;0.000172530721067321!GO:0003684;damaged DNA binding;0.000176762615923806!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000179934561482834!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000184646827730647!GO:0016564;transcription repressor activity;0.000187458759211407!GO:0016049;cell growth;0.000194596970179722!GO:0043681;protein import into mitochondrion;0.00020122379690392!GO:0003682;chromatin binding;0.000202829190357994!GO:0051252;regulation of RNA metabolic process;0.000212417648258643!GO:0007088;regulation of mitosis;0.000232476012778624!GO:0006302;double-strand break repair;0.000232476012778624!GO:0009165;nucleotide biosynthetic process;0.000246466337261988!GO:0005874;microtubule;0.000247513086977812!GO:0008610;lipid biosynthetic process;0.00025108692761187!GO:0005885;Arp2/3 protein complex;0.000287068630621654!GO:0006612;protein targeting to membrane;0.000288730258479332!GO:0000059;protein import into nucleus, docking;0.000290856910887727!GO:0005048;signal sequence binding;0.000319214884722257!GO:0051168;nuclear export;0.000362795853812231!GO:0030036;actin cytoskeleton organization and biogenesis;0.000365816102168833!GO:0006626;protein targeting to mitochondrion;0.000392629591690155!GO:0008186;RNA-dependent ATPase activity;0.000400022507030147!GO:0033116;ER-Golgi intermediate compartment membrane;0.000406705087611809!GO:0006839;mitochondrial transport;0.000428695505615933!GO:0030133;transport vesicle;0.00048511740080877!GO:0007093;mitotic cell cycle checkpoint;0.000490921899716853!GO:0003690;double-stranded DNA binding;0.000494495764602331!GO:0008250;oligosaccharyl transferase complex;0.000509550599742988!GO:0046474;glycerophospholipid biosynthetic process;0.000514817147160498!GO:0008033;tRNA processing;0.000517204862823354!GO:0006310;DNA recombination;0.000530757475707588!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000540930955003844!GO:0003729;mRNA binding;0.000559147034946364!GO:0051052;regulation of DNA metabolic process;0.000563297704960239!GO:0005741;mitochondrial outer membrane;0.000567300228926313!GO:0001558;regulation of cell growth;0.000598858320049143!GO:0016741;transferase activity, transferring one-carbon groups;0.000606106716378579!GO:0008168;methyltransferase activity;0.00063084422945616!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000661866586836504!GO:0003678;DNA helicase activity;0.000718916382928678!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000733357168511053!GO:0004576;oligosaccharyl transferase activity;0.000733357168511053!GO:0051789;response to protein stimulus;0.000762682920148413!GO:0006986;response to unfolded protein;0.000762682920148413!GO:0006414;translational elongation;0.000798320863137892!GO:0007052;mitotic spindle organization and biogenesis;0.000801899427318389!GO:0006383;transcription from RNA polymerase III promoter;0.000833133482820436!GO:0051920;peroxiredoxin activity;0.00084787567964301!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000900351196426173!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000900351196426173!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000900351196426173!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000900351196426173!GO:0044452;nucleolar part;0.000903995346988232!GO:0030663;COPI coated vesicle membrane;0.00090801451548608!GO:0030126;COPI vesicle coat;0.00090801451548608!GO:0007006;mitochondrial membrane organization and biogenesis;0.000967329934803221!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000981271253672264!GO:0046467;membrane lipid biosynthetic process;0.000981271253672264!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00105347929613907!GO:0004004;ATP-dependent RNA helicase activity;0.00113561578398105!GO:0000082;G1/S transition of mitotic cell cycle;0.00117708094510801!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0011904334851171!GO:0043488;regulation of mRNA stability;0.00126960639249823!GO:0043487;regulation of RNA stability;0.00126960639249823!GO:0018196;peptidyl-asparagine modification;0.00131374882356094!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00131374882356094!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00141880971316676!GO:0043284;biopolymer biosynthetic process;0.00142539205916986!GO:0005684;U2-dependent spliceosome;0.00145502276212078!GO:0006402;mRNA catabolic process;0.00146834893446904!GO:0005791;rough endoplasmic reticulum;0.00148771721085834!GO:0004527;exonuclease activity;0.00149048773959086!GO:0003714;transcription corepressor activity;0.00156481363769274!GO:0006401;RNA catabolic process;0.00164865066868743!GO:0048500;signal recognition particle;0.00171921803127209!GO:0005876;spindle microtubule;0.00178617801617858!GO:0007017;microtubule-based process;0.00179114878553739!GO:0051287;NAD binding;0.00193029661174287!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00199121891429039!GO:0042802;identical protein binding;0.00200402518752775!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00206438620844289!GO:0031072;heat shock protein binding;0.00213312511028232!GO:0030132;clathrin coat of coated pit;0.00214881063235183!GO:0030029;actin filament-based process;0.002158379387542!GO:0030118;clathrin coat;0.00218404932831418!GO:0030880;RNA polymerase complex;0.00225068543401047!GO:0030658;transport vesicle membrane;0.00230724357808697!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00238571900358817!GO:0008312;7S RNA binding;0.00239340640860765!GO:0000228;nuclear chromosome;0.00247513869514155!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00253480067673793!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00254912982190407!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00254912982190407!GO:0005637;nuclear inner membrane;0.00270198577161354!GO:0051087;chaperone binding;0.00273294441954219!GO:0008180;signalosome;0.00273600032959449!GO:0032508;DNA duplex unwinding;0.00281934846091669!GO:0032392;DNA geometric change;0.00281934846091669!GO:0006289;nucleotide-excision repair;0.00282631169211554!GO:0030137;COPI-coated vesicle;0.00283798779790563!GO:0007243;protein kinase cascade;0.00283945282743026!GO:0030134;ER to Golgi transport vesicle;0.00289464613316197!GO:0050662;coenzyme binding;0.00299260421451471!GO:0008047;enzyme activator activity;0.00301254775933499!GO:0005773;vacuole;0.00310189736127584!GO:0006268;DNA unwinding during replication;0.00312222555748943!GO:0035258;steroid hormone receptor binding;0.00312429455463224!GO:0015631;tubulin binding;0.00331176448074989!GO:0000922;spindle pole;0.00350588267430011!GO:0048471;perinuclear region of cytoplasm;0.00378458962735473!GO:0051540;metal cluster binding;0.00378944464503281!GO:0051536;iron-sulfur cluster binding;0.00378944464503281!GO:0031124;mRNA 3'-end processing;0.00386348929539273!GO:0016044;membrane organization and biogenesis;0.00400412360688594!GO:0006220;pyrimidine nucleotide metabolic process;0.00410594758020507!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00412907772122354!GO:0045047;protein targeting to ER;0.00412907772122354!GO:0004674;protein serine/threonine kinase activity;0.00417500441663912!GO:0000049;tRNA binding;0.00418740697456472!GO:0030127;COPII vesicle coat;0.00436451861840709!GO:0012507;ER to Golgi transport vesicle membrane;0.00436451861840709!GO:0006595;polyamine metabolic process;0.00454089657445224!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00463423821961903!GO:0006352;transcription initiation;0.00464227511166131!GO:0006275;regulation of DNA replication;0.0046510968009974!GO:0000910;cytokinesis;0.00465980651819508!GO:0046489;phosphoinositide biosynthetic process;0.00480217514848483!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00494494270275308!GO:0000428;DNA-directed RNA polymerase complex;0.00494494270275308!GO:0017166;vinculin binding;0.00501841743177376!GO:0005096;GTPase activator activity;0.0052550289660565!GO:0000792;heterochromatin;0.00553151365886633!GO:0015992;proton transport;0.00554269951362104!GO:0030660;Golgi-associated vesicle membrane;0.00562348233200893!GO:0048522;positive regulation of cellular process;0.00575103750793166!GO:0031323;regulation of cellular metabolic process;0.00586049867847719!GO:0043596;nuclear replication fork;0.0058809280121577!GO:0006891;intra-Golgi vesicle-mediated transport;0.00633274833429094!GO:0006818;hydrogen transport;0.00653151964654796!GO:0030119;AP-type membrane coat adaptor complex;0.00672442806578887!GO:0032984;macromolecular complex disassembly;0.00679435437473558!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00679875936556009!GO:0015399;primary active transmembrane transporter activity;0.00679875936556009!GO:0008139;nuclear localization sequence binding;0.00681446047354903!GO:0006082;organic acid metabolic process;0.00684297225526315!GO:0008092;cytoskeletal protein binding;0.00694119378695817!GO:0005869;dynactin complex;0.00694869915903604!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00696695445135498!GO:0004518;nuclease activity;0.00698482104844069!GO:0008632;apoptotic program;0.00710541586231589!GO:0046483;heterocycle metabolic process;0.00714985174206634!GO:0030521;androgen receptor signaling pathway;0.00714985174206634!GO:0043022;ribosome binding;0.00717773100579976!GO:0019752;carboxylic acid metabolic process;0.00717773100579976!GO:0000323;lytic vacuole;0.00728149650223143!GO:0005764;lysosome;0.00728149650223143!GO:0003746;translation elongation factor activity;0.00756284039924883!GO:0004003;ATP-dependent DNA helicase activity;0.00762137276194754!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.007655580607967!GO:0006284;base-excision repair;0.0077114200043311!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00779815744780074!GO:0030027;lamellipodium;0.00799545451300998!GO:0051539;4 iron, 4 sulfur cluster binding;0.00834255494753942!GO:0016408;C-acyltransferase activity;0.00844113519963379!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00851755624316755!GO:0009112;nucleobase metabolic process;0.00865075100943121!GO:0003711;transcription elongation regulator activity;0.00867554853842434!GO:0016251;general RNA polymerase II transcription factor activity;0.00868539912397944!GO:0009116;nucleoside metabolic process;0.00868629397526747!GO:0048487;beta-tubulin binding;0.00881364289736956!GO:0019206;nucleoside kinase activity;0.00919352861073632!GO:0006520;amino acid metabolic process;0.00930188616338673!GO:0030176;integral to endoplasmic reticulum membrane;0.00932383964279393!GO:0006650;glycerophospholipid metabolic process;0.00951087465287234!GO:0006611;protein export from nucleus;0.00977001112432713!GO:0005832;chaperonin-containing T-complex;0.00984791011441211!GO:0031901;early endosome membrane;0.0100128257873638!GO:0016272;prefoldin complex;0.0105848905216824!GO:0000339;RNA cap binding;0.0106966176694017!GO:0043624;cellular protein complex disassembly;0.0108341848299584!GO:0005758;mitochondrial intermembrane space;0.0108988741962703!GO:0030131;clathrin adaptor complex;0.0109485530978317!GO:0031570;DNA integrity checkpoint;0.010970828211712!GO:0006350;transcription;0.0111444487684089!GO:0065007;biological regulation;0.0111444487684089!GO:0006338;chromatin remodeling;0.0112913458394718!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0112913458394718!GO:0015002;heme-copper terminal oxidase activity;0.0112913458394718!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0112913458394718!GO:0004129;cytochrome-c oxidase activity;0.0112913458394718!GO:0045941;positive regulation of transcription;0.0112913458394718!GO:0006405;RNA export from nucleus;0.0114292052182604!GO:0044262;cellular carbohydrate metabolic process;0.0116153818054226!GO:0007050;cell cycle arrest;0.0116399663034782!GO:0007021;tubulin folding;0.0116414990641623!GO:0030041;actin filament polymerization;0.0117089792434456!GO:0045892;negative regulation of transcription, DNA-dependent;0.0121185755778817!GO:0008022;protein C-terminus binding;0.01220736146228!GO:0043241;protein complex disassembly;0.0122174885102112!GO:0007264;small GTPase mediated signal transduction;0.0122334337084331!GO:0006740;NADPH regeneration;0.0123455877761669!GO:0006098;pentose-phosphate shunt;0.0123455877761669!GO:0022890;inorganic cation transmembrane transporter activity;0.0124761868898187!GO:0004177;aminopeptidase activity;0.0128250143469077!GO:0040008;regulation of growth;0.0131091202188945!GO:0000178;exosome (RNase complex);0.0132239528344124!GO:0016584;nucleosome positioning;0.0132239528344124!GO:0006144;purine base metabolic process;0.0132950444673185!GO:0045893;positive regulation of transcription, DNA-dependent;0.0133882755482823!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0134658651191211!GO:0000819;sister chromatid segregation;0.0137429259196161!GO:0000070;mitotic sister chromatid segregation;0.0137480534961817!GO:0005862;muscle thin filament tropomyosin;0.0139992383328363!GO:0051128;regulation of cellular component organization and biogenesis;0.0142874133114375!GO:0006892;post-Golgi vesicle-mediated transport;0.014880683709392!GO:0006509;membrane protein ectodomain proteolysis;0.0151549247579238!GO:0033619;membrane protein proteolysis;0.0151549247579238!GO:0042393;histone binding;0.0152924095872727!GO:0045045;secretory pathway;0.0156051767816304!GO:0005669;transcription factor TFIID complex;0.0156911591710953!GO:0031123;RNA 3'-end processing;0.0160506991404372!GO:0065009;regulation of a molecular function;0.0165541443418162!GO:0006779;porphyrin biosynthetic process;0.0170090421533156!GO:0033014;tetrapyrrole biosynthetic process;0.0170090421533156!GO:0000096;sulfur amino acid metabolic process;0.0170366199593516!GO:0006778;porphyrin metabolic process;0.0170647384194345!GO:0033013;tetrapyrrole metabolic process;0.0170647384194345!GO:0009303;rRNA transcription;0.0174320523276228!GO:0007346;regulation of progression through mitotic cell cycle;0.0177862872766873!GO:0033673;negative regulation of kinase activity;0.01787416028187!GO:0006469;negative regulation of protein kinase activity;0.01787416028187!GO:0008299;isoprenoid biosynthetic process;0.0180434434782874!GO:0005100;Rho GTPase activator activity;0.0185497108680105!GO:0006497;protein amino acid lipidation;0.0185585462283147!GO:0000209;protein polyubiquitination;0.018566771309099!GO:0006979;response to oxidative stress;0.018861485414961!GO:0004532;exoribonuclease activity;0.018861485414961!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.018861485414961!GO:0048037;cofactor binding;0.0195190666358681!GO:0008154;actin polymerization and/or depolymerization;0.0195870405336933!GO:0001726;ruffle;0.0197265452279392!GO:0030518;steroid hormone receptor signaling pathway;0.0197745595152222!GO:0031902;late endosome membrane;0.0198356104435019!GO:0043601;nuclear replisome;0.020106624326293!GO:0030894;replisome;0.020106624326293!GO:0016407;acetyltransferase activity;0.0203370411200413!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0204999829068738!GO:0030125;clathrin vesicle coat;0.0205306203297969!GO:0030665;clathrin coated vesicle membrane;0.0205306203297969!GO:0000152;nuclear ubiquitin ligase complex;0.0206601453168945!GO:0008408;3'-5' exonuclease activity;0.0206601453168945!GO:0006378;mRNA polyadenylation;0.0209201346686427!GO:0050681;androgen receptor binding;0.0209993372378479!GO:0031529;ruffle organization and biogenesis;0.021154455859943!GO:0030032;lamellipodium biogenesis;0.0212550749425803!GO:0031970;organelle envelope lumen;0.0216303529045588!GO:0051348;negative regulation of transferase activity;0.0216348367675441!GO:0009124;nucleoside monophosphate biosynthetic process;0.0216983697729975!GO:0009123;nucleoside monophosphate metabolic process;0.0216983697729975!GO:0006007;glucose catabolic process;0.0216983697729975!GO:0006270;DNA replication initiation;0.022818571058024!GO:0043189;H4/H2A histone acetyltransferase complex;0.0229927623135005!GO:0015036;disulfide oxidoreductase activity;0.0232254093815818!GO:0008234;cysteine-type peptidase activity;0.0233262786333084!GO:0030833;regulation of actin filament polymerization;0.0239966283182339!GO:0007034;vacuolar transport;0.0244322340243284!GO:0046128;purine ribonucleoside metabolic process;0.0247831577284545!GO:0042278;purine nucleoside metabolic process;0.0247831577284545!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0250557548195298!GO:0008652;amino acid biosynthetic process;0.0250605867587256!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0252536935999534!GO:0016125;sterol metabolic process;0.025312594318906!GO:0040029;regulation of gene expression, epigenetic;0.0254199037341923!GO:0009262;deoxyribonucleotide metabolic process;0.0260661958839616!GO:0030496;midbody;0.0266961967337338!GO:0000287;magnesium ion binding;0.0267605743588692!GO:0006376;mRNA splice site selection;0.0268005000876534!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0268005000876534!GO:0006733;oxidoreduction coenzyme metabolic process;0.027181033486733!GO:0042770;DNA damage response, signal transduction;0.0272295597983392!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0272850571824044!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.027355169376473!GO:0000725;recombinational repair;0.027355169376473!GO:0000724;double-strand break repair via homologous recombination;0.027355169376473!GO:0006950;response to stress;0.027355169376473!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0277070009122206!GO:0030145;manganese ion binding;0.0279601874668894!GO:0031625;ubiquitin protein ligase binding;0.0283084173088059!GO:0035267;NuA4 histone acetyltransferase complex;0.0283785172245255!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0284865954323443!GO:0031371;ubiquitin conjugating enzyme complex;0.0285679923111007!GO:0048146;positive regulation of fibroblast proliferation;0.0287128675375915!GO:0022411;cellular component disassembly;0.0288903325738928!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0292471466536799!GO:0016197;endosome transport;0.0292471466536799!GO:0046426;negative regulation of JAK-STAT cascade;0.0297201803548982!GO:0032259;methylation;0.0304666035552496!GO:0030508;thiol-disulfide exchange intermediate activity;0.0305016910112053!GO:0000077;DNA damage checkpoint;0.0326182889997322!GO:0009451;RNA modification;0.0326485523279887!GO:0048144;fibroblast proliferation;0.0328887709154919!GO:0048145;regulation of fibroblast proliferation;0.0328887709154919!GO:0031577;spindle checkpoint;0.0332962991128968!GO:0004448;isocitrate dehydrogenase activity;0.0339910842696676!GO:0030911;TPR domain binding;0.0340155742434184!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0344372012412242!GO:0033043;regulation of organelle organization and biogenesis;0.0344372012412242!GO:0000123;histone acetyltransferase complex;0.0348620105583688!GO:0008538;proteasome activator activity;0.0351076700068204!GO:0005784;translocon complex;0.0355035429031325!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0355035429031325!GO:0010257;NADH dehydrogenase complex assembly;0.0355035429031325!GO:0033108;mitochondrial respiratory chain complex assembly;0.0355035429031325!GO:0006506;GPI anchor biosynthetic process;0.0356053196901222!GO:0004523;ribonuclease H activity;0.0359438601972526!GO:0030659;cytoplasmic vesicle membrane;0.0360358555849481!GO:0030865;cortical cytoskeleton organization and biogenesis;0.036469801355499!GO:0032200;telomere organization and biogenesis;0.0365132983664445!GO:0000723;telomere maintenance;0.0365132983664445!GO:0044454;nuclear chromosome part;0.0368036138768046!GO:0047485;protein N-terminus binding;0.0372602062174647!GO:0006984;ER-nuclear signaling pathway;0.0372602062174647!GO:0030384;phosphoinositide metabolic process;0.0375441111126131!GO:0043130;ubiquitin binding;0.0376689713726657!GO:0032182;small conjugating protein binding;0.0376689713726657!GO:0051098;regulation of binding;0.0383399346985253!GO:0006739;NADP metabolic process;0.0383564850046215!GO:0019783;small conjugating protein-specific protease activity;0.0387269335673534!GO:0010468;regulation of gene expression;0.0388305095247219!GO:0042158;lipoprotein biosynthetic process;0.0393041284867539!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0393771232986512!GO:0006607;NLS-bearing substrate import into nucleus;0.0394602825631886!GO:0043492;ATPase activity, coupled to movement of substances;0.0394770496892475!GO:0016790;thiolester hydrolase activity;0.0401709694868196!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0407866290688171!GO:0045039;protein import into mitochondrial inner membrane;0.0407866290688171!GO:0008637;apoptotic mitochondrial changes;0.0412167004549333!GO:0000118;histone deacetylase complex;0.0412514075534389!GO:0043414;biopolymer methylation;0.0412881914497204!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0417204730399722!GO:0005663;DNA replication factor C complex;0.0424100099982829!GO:0004843;ubiquitin-specific protease activity;0.0425120658129767!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0427437321203576!GO:0003756;protein disulfide isomerase activity;0.0428292547645344!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0428292547645344!GO:0033559;unsaturated fatty acid metabolic process;0.0429052465285175!GO:0006636;unsaturated fatty acid biosynthetic process;0.0429052465285175!GO:0008097;5S rRNA binding;0.0439519481231738!GO:0004722;protein serine/threonine phosphatase activity;0.0443270256086824!GO:0007569;cell aging;0.0448425553449849!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0448846562352044!GO:0009161;ribonucleoside monophosphate metabolic process;0.0448846562352044!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0448846562352044!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0452848346674926!GO:0000781;chromosome, telomeric region;0.0455763708299761!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0455770461019354!GO:0005652;nuclear lamina;0.0456071571618151!GO:0006505;GPI anchor metabolic process;0.0456071571618151!GO:0035035;histone acetyltransferase binding;0.0462576820415971!GO:0006266;DNA ligation;0.0463296125844824!GO:0017134;fibroblast growth factor binding;0.0473952057883042!GO:0000726;non-recombinational repair;0.0474849602535372!GO:0005680;anaphase-promoting complex;0.0474849602535372!GO:0042168;heme metabolic process;0.0490254417113094!GO:0005881;cytoplasmic microtubule;0.0499204418343788 | |||
|sample_id=11318 | |sample_id=11318 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 105: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=NKX2-2,8:1.49400487652;ALX4:1.45995707942;TOPORS:1.34116228898;FOXD3:1.27835337201;NKX6-1,2:1.2276255246;GFI1:1.20063269278;ZIC1..3:1.17936399622;TFDP1:1.16063855291;RXR{A,B,G}:1.11704645537;PAX8:1.11171829797;UFEwm:1.10099020978;E2F1..5:1.03482293526;AIRE:0.963591943294;FOXP1:0.902103198145;ZNF238:0.828808888987;FOXQ1:0.760196630973;HES1:0.745915015081;KLF4:0.730701015937;NFY{A,B,C}:0.717875007822;CDC5L:0.71076746577;PAX4:0.710740407103;GZF1:0.678336423815;PITX1..3:0.664832961754;GATA4:0.659671297283;TEF:0.649239562031;EN1,2:0.600286220976;MYB:0.571035431146;NKX2-1,4:0.538003033284;ZBTB16:0.513559513274;POU3F1..4:0.512812316371;GTF2A1,2:0.506475061104;XCPE1{core}:0.474225304289;TLX1..3_NFIC{dimer}:0.46158363592;YY1:0.461059118949;HOXA9_MEIS1:0.460295738614;ONECUT1,2:0.454058279975;PDX1:0.445915900853;ZNF143:0.438615343135;NR3C1:0.428995538697;POU1F1:0.419159051324;TEAD1:0.408085814099;PBX1:0.40740432432;PAX5:0.4046227035;MYBL2:0.40226594211;GFI1B:0.386019384832;LHX3,4:0.379265400955;NKX3-1:0.344940765239;EVI1:0.336887937284;NRF1:0.329512161741;EBF1:0.303969199723;PPARG:0.272252065576;STAT5{A,B}:0.271935825942;HOX{A5,B5}:0.265899430362;NFIX:0.253267374649;FOXL1:0.243584935829;CDX1,2,4:0.243212821031;TAL1_TCF{3,4,12}:0.224700559908;BACH2:0.223184394302;POU2F1..3:0.220849222595;MZF1:0.212968558602;SOX17:0.212158306717;PRDM1:0.210239961406;GTF2I:0.148431135552;ZBTB6:0.131144786932;HOX{A4,D4}:0.12181303058;PATZ1:0.113878812851;TBX4,5:0.0989704419299;ELK1,4_GABP{A,B1}:0.0961444668853;ZNF423:0.0740766211354;PAX1,9:0.0698696736889;SP1:0.0553969086792;NKX2-3_NKX2-5:0.052426657179;ARID5B:0.0478813775458;TFAP4:0.0425993143218;IKZF2:0.0407940957763;ZNF384:0.0314052687272;TFAP2{A,C}:0.0305655610817;NR1H4:0.028649022423;ALX1:0.0204570306528;FOXO1,3,4:0.00959941653228;AR:0.00569864097016;FOS_FOS{B,L1}_JUN{B,D}:0.00168414360882;FOX{I1,J2}:-0.00352321404624;NR5A1,2:-0.0247602680351;HIC1:-0.0311941351043;FOX{F1,F2,J1}:-0.0437672609805;NFE2L2:-0.0495558537913;ESR1:-0.0580092717999;FOXM1:-0.0591697527064;ZFP161:-0.0703232405925;MAZ:-0.0709458169474;TP53:-0.0712895348573;NFATC1..3:-0.0830065001815;MTF1:-0.0880873478829;STAT1,3:-0.109392914537;GLI1..3:-0.119135514622;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.128797920154;XBP1:-0.136617561399;RXRA_VDR{dimer}:-0.138463444888;T:-0.147136130965;OCT4_SOX2{dimer}:-0.149461988546;SOX{8,9,10}:-0.154378044686;LEF1_TCF7_TCF7L1,2:-0.154457869089;AHR_ARNT_ARNT2:-0.160627721334;HNF4A_NR2F1,2:-0.165023072627;TFCP2:-0.183052237168;IKZF1:-0.199427145762;NANOG{mouse}:-0.212173519342;MTE{core}:-0.236124823289;GCM1,2:-0.243191170777;HNF1A:-0.243278113657;FOSL2:-0.257661792075;CEBPA,B_DDIT3:-0.261523435157;SRF:-0.272231503785;bHLH_family:-0.281305672342;HSF1,2:-0.283870165244;TGIF1:-0.284130299138;RUNX1..3:-0.285556312907;NFE2:-0.289314496632;SOX5:-0.292657324498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.29351100925;TFAP2B:-0.305200493752;BREu{core}:-0.308081666072;SPZ1:-0.32058687497;PAX3,7:-0.32504850185;EGR1..3:-0.338489140346;ATF6:-0.340416497372;HLF:-0.35734942701;RFX1:-0.358720292088;HMGA1,2:-0.358831587055;ELF1,2,4:-0.371170721387;PAX6:-0.374366437406;MYFfamily:-0.378717781875;RREB1:-0.38305979643;SOX2:-0.389027913352;DMAP1_NCOR{1,2}_SMARC:-0.390626989172;CUX2:-0.400192568855;TBP:-0.402322219432;POU5F1:-0.40978300937;HAND1,2:-0.429319375711;FOXP3:-0.432756603778;MEF2{A,B,C,D}:-0.434431193611;REST:-0.436999900543;SPI1:-0.438969041737;RFX2..5_RFXANK_RFXAP:-0.459618359127;SPIB:-0.465697590612;IRF1,2:-0.465939257696;LMO2:-0.482507691163;PRRX1,2:-0.498140782001;NHLH1,2:-0.50172964386;MED-1{core}:-0.503167589463;CREB1:-0.511215978928;NR6A1:-0.511744063138;ZNF148:-0.516521493926;GATA6:-0.525873902679;NFKB1_REL_RELA:-0.527306909094;ADNP_IRX_SIX_ZHX:-0.52976043244;SNAI1..3:-0.532655531704;POU6F1:-0.540833564705;ATF5_CREB3:-0.550619570327;IRF7:-0.554800621742;NFIL3:-0.562710196876;NFE2L1:-0.564032817515;ESRRA:-0.573110685902;FOXA2:-0.578860387004;NKX3-2:-0.596805935563;BPTF:-0.609510593269;CRX:-0.615740531942;ETS1,2:-0.620078756291;NANOG:-0.657652893741;HOX{A6,A7,B6,B7}:-0.67100049866;JUN:-0.673885165482;FOXN1:-0.682993902047;RBPJ:-0.69803317269;HMX1:-0.74950170162;STAT2,4,6:-0.756001294073;MYOD1:-0.766626801937;ATF4:-0.810222407657;DBP:-0.822127188485;ZEB1:-0.878696266786;RORA:-0.887848580674;HBP1_HMGB_SSRP1_UBTF:-0.925319731994;SREBF1,2:-0.985015112611;HIF1A:-1.00907373714;MAFB:-1.04168062967;VSX1,2:-1.09590407488;PAX2:-1.09963038206;SMAD1..7,9:-1.12131715405;FOX{D1,D2}:-1.15134119832;EP300:-1.27174286015;ATF2:-1.3124269504;TLX2:-1.39658837242 | |top_motifs=NKX2-2,8:1.49400487652;ALX4:1.45995707942;TOPORS:1.34116228898;FOXD3:1.27835337201;NKX6-1,2:1.2276255246;GFI1:1.20063269278;ZIC1..3:1.17936399622;TFDP1:1.16063855291;RXR{A,B,G}:1.11704645537;PAX8:1.11171829797;UFEwm:1.10099020978;E2F1..5:1.03482293526;AIRE:0.963591943294;FOXP1:0.902103198145;ZNF238:0.828808888987;FOXQ1:0.760196630973;HES1:0.745915015081;KLF4:0.730701015937;NFY{A,B,C}:0.717875007822;CDC5L:0.71076746577;PAX4:0.710740407103;GZF1:0.678336423815;PITX1..3:0.664832961754;GATA4:0.659671297283;TEF:0.649239562031;EN1,2:0.600286220976;MYB:0.571035431146;NKX2-1,4:0.538003033284;ZBTB16:0.513559513274;POU3F1..4:0.512812316371;GTF2A1,2:0.506475061104;XCPE1{core}:0.474225304289;TLX1..3_NFIC{dimer}:0.46158363592;YY1:0.461059118949;HOXA9_MEIS1:0.460295738614;ONECUT1,2:0.454058279975;PDX1:0.445915900853;ZNF143:0.438615343135;NR3C1:0.428995538697;POU1F1:0.419159051324;TEAD1:0.408085814099;PBX1:0.40740432432;PAX5:0.4046227035;MYBL2:0.40226594211;GFI1B:0.386019384832;LHX3,4:0.379265400955;NKX3-1:0.344940765239;EVI1:0.336887937284;NRF1:0.329512161741;EBF1:0.303969199723;PPARG:0.272252065576;STAT5{A,B}:0.271935825942;HOX{A5,B5}:0.265899430362;NFIX:0.253267374649;FOXL1:0.243584935829;CDX1,2,4:0.243212821031;TAL1_TCF{3,4,12}:0.224700559908;BACH2:0.223184394302;POU2F1..3:0.220849222595;MZF1:0.212968558602;SOX17:0.212158306717;PRDM1:0.210239961406;GTF2I:0.148431135552;ZBTB6:0.131144786932;HOX{A4,D4}:0.12181303058;PATZ1:0.113878812851;TBX4,5:0.0989704419299;ELK1,4_GABP{A,B1}:0.0961444668853;ZNF423:0.0740766211354;PAX1,9:0.0698696736889;SP1:0.0553969086792;NKX2-3_NKX2-5:0.052426657179;ARID5B:0.0478813775458;TFAP4:0.0425993143218;IKZF2:0.0407940957763;ZNF384:0.0314052687272;TFAP2{A,C}:0.0305655610817;NR1H4:0.028649022423;ALX1:0.0204570306528;FOXO1,3,4:0.00959941653228;AR:0.00569864097016;FOS_FOS{B,L1}_JUN{B,D}:0.00168414360882;FOX{I1,J2}:-0.00352321404624;NR5A1,2:-0.0247602680351;HIC1:-0.0311941351043;FOX{F1,F2,J1}:-0.0437672609805;NFE2L2:-0.0495558537913;ESR1:-0.0580092717999;FOXM1:-0.0591697527064;ZFP161:-0.0703232405925;MAZ:-0.0709458169474;TP53:-0.0712895348573;NFATC1..3:-0.0830065001815;MTF1:-0.0880873478829;STAT1,3:-0.109392914537;GLI1..3:-0.119135514622;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.128797920154;XBP1:-0.136617561399;RXRA_VDR{dimer}:-0.138463444888;T:-0.147136130965;OCT4_SOX2{dimer}:-0.149461988546;SOX{8,9,10}:-0.154378044686;LEF1_TCF7_TCF7L1,2:-0.154457869089;AHR_ARNT_ARNT2:-0.160627721334;HNF4A_NR2F1,2:-0.165023072627;TFCP2:-0.183052237168;IKZF1:-0.199427145762;NANOG{mouse}:-0.212173519342;MTE{core}:-0.236124823289;GCM1,2:-0.243191170777;HNF1A:-0.243278113657;FOSL2:-0.257661792075;CEBPA,B_DDIT3:-0.261523435157;SRF:-0.272231503785;bHLH_family:-0.281305672342;HSF1,2:-0.283870165244;TGIF1:-0.284130299138;RUNX1..3:-0.285556312907;NFE2:-0.289314496632;SOX5:-0.292657324498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.29351100925;TFAP2B:-0.305200493752;BREu{core}:-0.308081666072;SPZ1:-0.32058687497;PAX3,7:-0.32504850185;EGR1..3:-0.338489140346;ATF6:-0.340416497372;HLF:-0.35734942701;RFX1:-0.358720292088;HMGA1,2:-0.358831587055;ELF1,2,4:-0.371170721387;PAX6:-0.374366437406;MYFfamily:-0.378717781875;RREB1:-0.38305979643;SOX2:-0.389027913352;DMAP1_NCOR{1,2}_SMARC:-0.390626989172;CUX2:-0.400192568855;TBP:-0.402322219432;POU5F1:-0.40978300937;HAND1,2:-0.429319375711;FOXP3:-0.432756603778;MEF2{A,B,C,D}:-0.434431193611;REST:-0.436999900543;SPI1:-0.438969041737;RFX2..5_RFXANK_RFXAP:-0.459618359127;SPIB:-0.465697590612;IRF1,2:-0.465939257696;LMO2:-0.482507691163;PRRX1,2:-0.498140782001;NHLH1,2:-0.50172964386;MED-1{core}:-0.503167589463;CREB1:-0.511215978928;NR6A1:-0.511744063138;ZNF148:-0.516521493926;GATA6:-0.525873902679;NFKB1_REL_RELA:-0.527306909094;ADNP_IRX_SIX_ZHX:-0.52976043244;SNAI1..3:-0.532655531704;POU6F1:-0.540833564705;ATF5_CREB3:-0.550619570327;IRF7:-0.554800621742;NFIL3:-0.562710196876;NFE2L1:-0.564032817515;ESRRA:-0.573110685902;FOXA2:-0.578860387004;NKX3-2:-0.596805935563;BPTF:-0.609510593269;CRX:-0.615740531942;ETS1,2:-0.620078756291;NANOG:-0.657652893741;HOX{A6,A7,B6,B7}:-0.67100049866;JUN:-0.673885165482;FOXN1:-0.682993902047;RBPJ:-0.69803317269;HMX1:-0.74950170162;STAT2,4,6:-0.756001294073;MYOD1:-0.766626801937;ATF4:-0.810222407657;DBP:-0.822127188485;ZEB1:-0.878696266786;RORA:-0.887848580674;HBP1_HMGB_SSRP1_UBTF:-0.925319731994;SREBF1,2:-0.985015112611;HIF1A:-1.00907373714;MAFB:-1.04168062967;VSX1,2:-1.09590407488;PAX2:-1.09963038206;SMAD1..7,9:-1.12131715405;FOX{D1,D2}:-1.15134119832;EP300:-1.27174286015;ATF2:-1.3124269504;TLX2:-1.39658837242 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11318-117D4;search_select_hide=table117:FF:11318-117D4 | |||
}} | }} | ||
Latest revision as of 16:33, 3 June 2020
| Name: | Fibroblast - Gingival, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11961 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11961
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11961
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.891 |
| 10 | 10 | 0.0477 |
| 100 | 100 | 0.155 |
| 101 | 101 | 0.953 |
| 102 | 102 | 0.668 |
| 103 | 103 | 0.342 |
| 104 | 104 | 0.948 |
| 105 | 105 | 0.329 |
| 106 | 106 | 0.00622 |
| 107 | 107 | 0.958 |
| 108 | 108 | 0.868 |
| 109 | 109 | 0.38 |
| 11 | 11 | 0.39 |
| 110 | 110 | 0.0228 |
| 111 | 111 | 0.598 |
| 112 | 112 | 0.552 |
| 113 | 113 | 0.0435 |
| 114 | 114 | 0.256 |
| 115 | 115 | 0.0476 |
| 116 | 116 | 0.15 |
| 117 | 117 | 0.0733 |
| 118 | 118 | 0.456 |
| 119 | 119 | 0.643 |
| 12 | 12 | 0.597 |
| 120 | 120 | 0.142 |
| 121 | 121 | 0.728 |
| 122 | 122 | 0.0139 |
| 123 | 123 | 0.504 |
| 124 | 124 | 0.567 |
| 125 | 125 | 0.531 |
| 126 | 126 | 0.652 |
| 127 | 127 | 0.743 |
| 128 | 128 | 0.593 |
| 129 | 129 | 0.612 |
| 13 | 13 | 0.863 |
| 130 | 130 | 0.211 |
| 131 | 131 | 0.191 |
| 132 | 132 | 0.565 |
| 133 | 133 | 0.75 |
| 134 | 134 | 0.673 |
| 135 | 135 | 0.00563 |
| 136 | 136 | 0.159 |
| 137 | 137 | 0.0703 |
| 138 | 138 | 0.481 |
| 139 | 139 | 0.00144 |
| 14 | 14 | 0.188 |
| 140 | 140 | 0.967 |
| 141 | 141 | 0.332 |
| 142 | 142 | 0.542 |
| 143 | 143 | 0.219 |
| 144 | 144 | 0.46 |
| 145 | 145 | 0.247 |
| 146 | 146 | 0.547 |
| 147 | 147 | 0.184 |
| 148 | 148 | 0.595 |
| 149 | 149 | 0.747 |
| 15 | 15 | 0.421 |
| 150 | 150 | 0.601 |
| 151 | 151 | 0.707 |
| 152 | 152 | 0.312 |
| 153 | 153 | 0.969 |
| 154 | 154 | 0.431 |
| 155 | 155 | 0.204 |
| 156 | 156 | 0.213 |
| 157 | 157 | 0.168 |
| 158 | 158 | 0.0197 |
| 159 | 159 | 0.297 |
| 16 | 16 | 0.862 |
| 160 | 160 | 0.0666 |
| 161 | 161 | 0.716 |
| 162 | 162 | 0.098 |
| 163 | 163 | 0.623 |
| 164 | 164 | 0.219 |
| 165 | 165 | 0.788 |
| 166 | 166 | 0.667 |
| 167 | 167 | 0.99 |
| 168 | 168 | 0.363 |
| 169 | 169 | 0.801 |
| 17 | 17 | 0.601 |
| 18 | 18 | 0.774 |
| 19 | 19 | 0.239 |
| 2 | 2 | 0.838 |
| 20 | 20 | 0.431 |
| 21 | 21 | 3.83236e-4 |
| 22 | 22 | 0.723 |
| 23 | 23 | 0.139 |
| 24 | 24 | 0.972 |
| 25 | 25 | 0.347 |
| 26 | 26 | 0.0357 |
| 27 | 27 | 0.69 |
| 28 | 28 | 0.317 |
| 29 | 29 | 0.617 |
| 3 | 3 | 0.559 |
| 30 | 30 | 0.684 |
| 31 | 31 | 0.73 |
| 32 | 32 | 0.0698 |
| 33 | 33 | 0.429 |
| 34 | 34 | 0.275 |
| 35 | 35 | 0.341 |
| 36 | 36 | 0.41 |
| 37 | 37 | 0.349 |
| 38 | 38 | 0.563 |
| 39 | 39 | 0.859 |
| 4 | 4 | 0.0637 |
| 40 | 40 | 0.785 |
| 41 | 41 | 0.019 |
| 42 | 42 | 0.964 |
| 43 | 43 | 0.314 |
| 44 | 44 | 0.305 |
| 45 | 45 | 0.0513 |
| 46 | 46 | 0.779 |
| 47 | 47 | 0.774 |
| 48 | 48 | 0.337 |
| 49 | 49 | 0.294 |
| 5 | 5 | 0.0921 |
| 50 | 50 | 0.354 |
| 51 | 51 | 0.722 |
| 52 | 52 | 0.172 |
| 53 | 53 | 0.659 |
| 54 | 54 | 0.694 |
| 55 | 55 | 0.949 |
| 56 | 56 | 0.985 |
| 57 | 57 | 0.405 |
| 58 | 58 | 0.166 |
| 59 | 59 | 0.986 |
| 6 | 6 | 0.439 |
| 60 | 60 | 0.0653 |
| 61 | 61 | 0.733 |
| 62 | 62 | 0.315 |
| 63 | 63 | 0.537 |
| 64 | 64 | 0.743 |
| 65 | 65 | 0.423 |
| 66 | 66 | 0.315 |
| 67 | 67 | 0.374 |
| 68 | 68 | 0.954 |
| 69 | 69 | 0.48 |
| 7 | 7 | 0.245 |
| 70 | 70 | 0.162 |
| 71 | 71 | 0.902 |
| 72 | 72 | 0.225 |
| 73 | 73 | 0.688 |
| 74 | 74 | 0.237 |
| 75 | 75 | 0.662 |
| 76 | 76 | 0.284 |
| 77 | 77 | 0.803 |
| 78 | 78 | 0.696 |
| 79 | 79 | 0.575 |
| 8 | 8 | 0.196 |
| 80 | 80 | 0.00223 |
| 81 | 81 | 0.858 |
| 82 | 82 | 0.151 |
| 83 | 83 | 0.366 |
| 84 | 84 | 0.676 |
| 85 | 85 | 0.0956 |
| 86 | 86 | 0.147 |
| 87 | 87 | 0.344 |
| 88 | 88 | 0.206 |
| 89 | 89 | 0.336 |
| 9 | 9 | 0.408 |
| 90 | 90 | 0.518 |
| 91 | 91 | 0.673 |
| 92 | 92 | 0.245 |
| 93 | 93 | 0.292 |
| 94 | 94 | 0.783 |
| 95 | 95 | 0.213 |
| 96 | 96 | 0.512 |
| 97 | 97 | 0.633 |
| 98 | 98 | 0.291 |
| 99 | 99 | 3.25337e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11961
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
