FF:10197-103E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005785 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005785 | |||
|accession_numbers=CAGE;DRX008648;DRR009520;DRZ000945;DRZ002330;DRZ012295;DRZ013680 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057116;DRR062875;DRZ007951 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001301,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011289 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10197-103E8 | |id=FF:10197-103E8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0011289 | ||
|is_obsolete= | |||
|library_id=CNhs12847 | |||
|library_id_phase_based=2:CNhs12847 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10197 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10197 | |||
|name=epididymis, adult | |name=epididymis, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 63: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12847,LSID973,release012,COMPLETED | |profile_hcage=CNhs12847,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234105-10 | |rna_catalog_number=R1234105-10 | ||
| Line 54: | Line 78: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id= | |rna_tube_id=1.03E+10 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |rnaseq_library_id=RDhi10059 | ||
|sample_age=24 | |||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 95: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.64810900212733e-248!GO:0005737;cytoplasm;1.04773244481595e-176!GO:0043226;organelle;4.58989638935717e-118!GO:0043229;intracellular organelle;9.30293859965653e-118!GO:0044444;cytoplasmic part;9.47503367636482e-118!GO:0043227;membrane-bound organelle;1.90815799577853e-102!GO:0043231;intracellular membrane-bound organelle;2.09830093881588e-102!GO:0044422;organelle part;4.46751714760661e-80!GO:0044446;intracellular organelle part;1.77502408322766e-78!GO:0005515;protein binding;1.9834324029745e-77!GO:0032991;macromolecular complex;3.03385050442605e-60!GO:0030529;ribonucleoprotein complex;1.22142446673898e-43!GO:0044238;primary metabolic process;5.82893876726189e-42!GO:0003723;RNA binding;2.35156024264558e-40!GO:0044237;cellular metabolic process;4.01327665899965e-40!GO:0005739;mitochondrion;1.34008929022497e-39!GO:0043233;organelle lumen;4.2031627919503e-38!GO:0031974;membrane-enclosed lumen;4.2031627919503e-38!GO:0016043;cellular component organization and biogenesis;4.58795508251888e-37!GO:0043170;macromolecule metabolic process;6.16379887859961e-36!GO:0033036;macromolecule localization;9.70715222602115e-36!GO:0031090;organelle membrane;1.83033035328622e-35!GO:0015031;protein transport;3.94420068281731e-35!GO:0044428;nuclear part;5.9284443362113e-35!GO:0019538;protein metabolic process;1.35084250385159e-33!GO:0043234;protein complex;3.61661128203987e-33!GO:0008104;protein localization;4.61376861594482e-33!GO:0045184;establishment of protein localization;7.34210744135824e-33!GO:0044260;cellular macromolecule metabolic process;3.59622025046188e-29!GO:0005829;cytosol;9.68375636789305e-29!GO:0031967;organelle envelope;2.27832755037051e-28!GO:0046907;intracellular transport;2.51474511896852e-28!GO:0031975;envelope;3.16235196416754e-28!GO:0044429;mitochondrial part;6.9913308406053e-28!GO:0044267;cellular protein metabolic process;2.15359478940104e-27!GO:0005840;ribosome;3.4489125284132e-26!GO:0005634;nucleus;9.37226984732356e-25!GO:0016071;mRNA metabolic process;2.5169449258051e-24!GO:0006886;intracellular protein transport;7.52483295898215e-24!GO:0006412;translation;1.05868413597271e-23!GO:0003735;structural constituent of ribosome;1.03527319061782e-22!GO:0008380;RNA splicing;2.30901806775891e-22!GO:0033279;ribosomal subunit;2.13730248634139e-21!GO:0065003;macromolecular complex assembly;2.37572275100569e-21!GO:0022607;cellular component assembly;2.82361012408035e-21!GO:0005783;endoplasmic reticulum;4.98100609662641e-21!GO:0043228;non-membrane-bound organelle;7.09211036200505e-21!GO:0043232;intracellular non-membrane-bound organelle;7.09211036200505e-21!GO:0006396;RNA processing;1.02373957813801e-20!GO:0031981;nuclear lumen;5.59723162758572e-20!GO:0005740;mitochondrial envelope;1.450717082741e-19!GO:0031966;mitochondrial membrane;1.86477030482633e-19!GO:0006397;mRNA processing;2.97390661186527e-19!GO:0019866;organelle inner membrane;3.63871867109943e-18!GO:0009058;biosynthetic process;4.42927369147157e-18!GO:0048770;pigment granule;9.6949683699406e-18!GO:0042470;melanosome;9.6949683699406e-18!GO:0006119;oxidative phosphorylation;1.15276173137718e-17!GO:0008092;cytoskeletal protein binding;1.21920713702557e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.54991212032835e-17!GO:0051641;cellular localization;2.663062982965e-17!GO:0005743;mitochondrial inner membrane;2.97952343779293e-17!GO:0051649;establishment of cellular localization;4.78424646385864e-17!GO:0044249;cellular biosynthetic process;7.64034355805993e-17!GO:0016192;vesicle-mediated transport;2.23124158277417e-16!GO:0006996;organelle organization and biogenesis;3.10212356620351e-16!GO:0008134;transcription factor binding;4.23942996021087e-16!GO:0009059;macromolecule biosynthetic process;5.29595639807629e-16!GO:0005681;spliceosome;7.69552170781566e-16!GO:0044445;cytosolic part;1.33423838013339e-14!GO:0012505;endomembrane system;4.03023093983517e-14!GO:0005794;Golgi apparatus;6.05167679729286e-14!GO:0044265;cellular macromolecule catabolic process;8.42578269790983e-14!GO:0005746;mitochondrial respiratory chain;1.91461089335295e-13!GO:0005654;nucleoplasm;2.22388251274298e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.5526188628719e-13!GO:0044455;mitochondrial membrane part;2.57278478818865e-13!GO:0043283;biopolymer metabolic process;2.84047282394889e-13!GO:0044432;endoplasmic reticulum part;6.72812826251176e-13!GO:0006457;protein folding;9.23827047161739e-13!GO:0000166;nucleotide binding;1.03083695096066e-12!GO:0048193;Golgi vesicle transport;1.19253813715096e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.37339821684653e-12!GO:0003954;NADH dehydrogenase activity;1.37339821684653e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.37339821684653e-12!GO:0010467;gene expression;2.166906167871e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.28941033650093e-12!GO:0019941;modification-dependent protein catabolic process;6.6375198668864e-12!GO:0043632;modification-dependent macromolecule catabolic process;6.6375198668864e-12!GO:0006605;protein targeting;8.5747109879694e-12!GO:0006511;ubiquitin-dependent protein catabolic process;8.97083927059678e-12!GO:0044257;cellular protein catabolic process;9.05526927239314e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.33167489677863e-12!GO:0044248;cellular catabolic process;1.20650257415762e-11!GO:0015935;small ribosomal subunit;2.04104136329265e-11!GO:0003779;actin binding;2.6908926077027e-11!GO:0022618;protein-RNA complex assembly;3.46528738356267e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.77216564533572e-11!GO:0003712;transcription cofactor activity;7.12018304723134e-11!GO:0015934;large ribosomal subunit;7.50867552994742e-11!GO:0015629;actin cytoskeleton;1.18242127511209e-10!GO:0030036;actin cytoskeleton organization and biogenesis;1.3015572985211e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.3445446610634e-10!GO:0045271;respiratory chain complex I;1.3445446610634e-10!GO:0005747;mitochondrial respiratory chain complex I;1.3445446610634e-10!GO:0043285;biopolymer catabolic process;1.34543360217892e-10!GO:0031980;mitochondrial lumen;1.54989590253197e-10!GO:0005759;mitochondrial matrix;1.54989590253197e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.78636608898212e-10!GO:0005793;ER-Golgi intermediate compartment;2.84229961124082e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.32234315885402e-10!GO:0042773;ATP synthesis coupled electron transport;3.32234315885402e-10!GO:0009057;macromolecule catabolic process;3.53985511978106e-10!GO:0030029;actin filament-based process;3.58461801346371e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.82034665857703e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;3.91682709624056e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.19630297664041e-10!GO:0044451;nucleoplasm part;4.19630297664041e-10!GO:0016462;pyrophosphatase activity;4.47156245896387e-10!GO:0006512;ubiquitin cycle;5.45288301343342e-10!GO:0016874;ligase activity;6.993293484421e-10!GO:0031982;vesicle;7.15133733550893e-10!GO:0017111;nucleoside-triphosphatase activity;1.25071064366737e-09!GO:0008135;translation factor activity, nucleic acid binding;1.25071064366737e-09!GO:0006461;protein complex assembly;1.25075416185299e-09!GO:0048523;negative regulation of cellular process;1.63655229089533e-09!GO:0031410;cytoplasmic vesicle;2.00880686982422e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.14657546967202e-09!GO:0051186;cofactor metabolic process;2.23272829096208e-09!GO:0051082;unfolded protein binding;2.23272829096208e-09!GO:0030163;protein catabolic process;2.27366503334736e-09!GO:0005635;nuclear envelope;2.39692199917787e-09!GO:0031988;membrane-bound vesicle;3.14835081410392e-09!GO:0009055;electron carrier activity;4.61990526134318e-09!GO:0008565;protein transporter activity;5.22940003457121e-09!GO:0016023;cytoplasmic membrane-bound vesicle;8.34583501399861e-09!GO:0016564;transcription repressor activity;1.17682795656987e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.35193359756552e-08!GO:0006913;nucleocytoplasmic transport;1.46471935474578e-08!GO:0031252;leading edge;2.36114645007312e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.5593590387195e-08!GO:0017076;purine nucleotide binding;2.62481031379948e-08!GO:0051169;nuclear transport;2.72337272005845e-08!GO:0005773;vacuole;2.99455768760233e-08!GO:0016604;nuclear body;2.99778141961595e-08!GO:0032553;ribonucleotide binding;3.15202663790187e-08!GO:0032555;purine ribonucleotide binding;3.15202663790187e-08!GO:0005788;endoplasmic reticulum lumen;3.52922831100747e-08!GO:0031965;nuclear membrane;4.12066486503485e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.8544664248637e-08!GO:0005768;endosome;6.67452895675701e-08!GO:0048519;negative regulation of biological process;7.36376614551985e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.41782288857725e-08!GO:0005789;endoplasmic reticulum membrane;8.55024261281813e-08!GO:0000323;lytic vacuole;9.09181316397767e-08!GO:0005764;lysosome;9.09181316397767e-08!GO:0043412;biopolymer modification;1.03725563299614e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.41499308551037e-07!GO:0000375;RNA splicing, via transesterification reactions;1.41499308551037e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.41499308551037e-07!GO:0016607;nuclear speck;1.58999108040736e-07!GO:0030120;vesicle coat;1.58999108040736e-07!GO:0030662;coated vesicle membrane;1.58999108040736e-07!GO:0006446;regulation of translational initiation;1.62031377894714e-07!GO:0003743;translation initiation factor activity;2.13730904376031e-07!GO:0043687;post-translational protein modification;2.46030034840182e-07!GO:0006732;coenzyme metabolic process;2.46688820334378e-07!GO:0048475;coated membrane;2.86782623578382e-07!GO:0030117;membrane coat;2.86782623578382e-07!GO:0005761;mitochondrial ribosome;3.54685713034586e-07!GO:0000313;organellar ribosome;3.54685713034586e-07!GO:0017038;protein import;3.9422433406521e-07!GO:0019829;cation-transporting ATPase activity;4.00242165750518e-07!GO:0006464;protein modification process;4.21735401797959e-07!GO:0009060;aerobic respiration;4.64997100051176e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.9892794986228e-07!GO:0009056;catabolic process;5.21241916897878e-07!GO:0006413;translational initiation;7.84910683453377e-07!GO:0003714;transcription corepressor activity;7.92318468548919e-07!GO:0045333;cellular respiration;8.42933520702388e-07!GO:0005730;nucleolus;8.78268076127057e-07!GO:0006366;transcription from RNA polymerase II promoter;9.04667479912261e-07!GO:0015986;ATP synthesis coupled proton transport;9.04667479912261e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.04667479912261e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.22790390105937e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.79051835346278e-07!GO:0012501;programmed cell death;1.15376370446937e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.23661882519641e-06!GO:0016044;membrane organization and biogenesis;1.4509442180675e-06!GO:0007010;cytoskeleton organization and biogenesis;1.54275454607386e-06!GO:0008219;cell death;1.86723008854808e-06!GO:0016265;death;1.86723008854808e-06!GO:0006915;apoptosis;2.08554572880483e-06!GO:0008639;small protein conjugating enzyme activity;2.3495643584197e-06!GO:0004842;ubiquitin-protein ligase activity;2.98629339051805e-06!GO:0005798;Golgi-associated vesicle;3.71294543466342e-06!GO:0006099;tricarboxylic acid cycle;4.14642462785295e-06!GO:0046356;acetyl-CoA catabolic process;4.14642462785295e-06!GO:0006793;phosphorus metabolic process;4.31458907107274e-06!GO:0006796;phosphate metabolic process;4.31458907107274e-06!GO:0019787;small conjugating protein ligase activity;4.82549086340873e-06!GO:0009141;nucleoside triphosphate metabolic process;5.33801930560699e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.99836561923643e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.99836561923643e-06!GO:0009199;ribonucleoside triphosphate metabolic process;6.25114117095604e-06!GO:0009150;purine ribonucleotide metabolic process;7.01278678851569e-06!GO:0030133;transport vesicle;7.65855609537371e-06!GO:0006163;purine nucleotide metabolic process;8.64757137642234e-06!GO:0046034;ATP metabolic process;8.88935337069173e-06!GO:0009259;ribonucleotide metabolic process;9.91999090543447e-06!GO:0019899;enzyme binding;1.02547353936079e-05!GO:0008307;structural constituent of muscle;1.09102495656095e-05!GO:0030554;adenyl nucleotide binding;1.13704943746399e-05!GO:0006606;protein import into nucleus;1.14160848648925e-05!GO:0044453;nuclear membrane part;1.14426605279412e-05!GO:0005524;ATP binding;1.14821184556746e-05!GO:0032559;adenyl ribonucleotide binding;1.18018145510479e-05!GO:0051246;regulation of protein metabolic process;1.20718928636428e-05!GO:0051170;nuclear import;1.41907848594878e-05!GO:0016310;phosphorylation;1.44639409557908e-05!GO:0016887;ATPase activity;1.66516741946817e-05!GO:0006259;DNA metabolic process;1.7356817382487e-05!GO:0044449;contractile fiber part;2.23612576042699e-05!GO:0051187;cofactor catabolic process;2.29195384223214e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.42873870675715e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.42873870675715e-05!GO:0009109;coenzyme catabolic process;2.48237807066776e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.5434127958316e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.5434127958316e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.58365332445874e-05!GO:0003713;transcription coactivator activity;2.76530868216119e-05!GO:0006084;acetyl-CoA metabolic process;2.79562140602819e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.84261923744887e-05!GO:0008654;phospholipid biosynthetic process;2.89699858335306e-05!GO:0044440;endosomal part;2.89699858335306e-05!GO:0010008;endosome membrane;2.89699858335306e-05!GO:0016881;acid-amino acid ligase activity;2.9910936985424e-05!GO:0006754;ATP biosynthetic process;3.04378617565898e-05!GO:0006753;nucleoside phosphate metabolic process;3.04378617565898e-05!GO:0042623;ATPase activity, coupled;3.3960949478378e-05!GO:0016563;transcription activator activity;3.72729399707216e-05!GO:0031324;negative regulation of cellular metabolic process;4.38055061220758e-05!GO:0051789;response to protein stimulus;4.73270713483975e-05!GO:0006986;response to unfolded protein;4.73270713483975e-05!GO:0045259;proton-transporting ATP synthase complex;4.74963228959533e-05!GO:0007264;small GTPase mediated signal transduction;5.57318633291546e-05!GO:0009892;negative regulation of metabolic process;5.59529351692805e-05!GO:0006613;cotranslational protein targeting to membrane;5.76824299903037e-05!GO:0009152;purine ribonucleotide biosynthetic process;6.01260409729169e-05!GO:0006897;endocytosis;6.01460162976005e-05!GO:0010324;membrane invagination;6.01460162976005e-05!GO:0043069;negative regulation of programmed cell death;6.04234298439689e-05!GO:0005856;cytoskeleton;6.29902603488535e-05!GO:0008361;regulation of cell size;6.40199244187093e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.67452753368761e-05!GO:0016481;negative regulation of transcription;6.67452753368761e-05!GO:0006164;purine nucleotide biosynthetic process;6.99492025095998e-05!GO:0016049;cell growth;7.43613282278152e-05!GO:0001726;ruffle;8.3395808895933e-05!GO:0005839;proteasome core complex (sensu Eukaryota);8.55816339353612e-05!GO:0042802;identical protein binding;8.76051856749132e-05!GO:0043066;negative regulation of apoptosis;9.09259104287894e-05!GO:0003924;GTPase activity;9.7942132763968e-05!GO:0003676;nucleic acid binding;9.83100718710409e-05!GO:0005643;nuclear pore;0.000110368439872193!GO:0051128;regulation of cellular component organization and biogenesis;0.000112521690862868!GO:0009260;ribonucleotide biosynthetic process;0.000125935107254223!GO:0030027;lamellipodium;0.000126184874269607!GO:0043292;contractile fiber;0.000127757224354518!GO:0044431;Golgi apparatus part;0.000133467856813191!GO:0006916;anti-apoptosis;0.000134369021276653!GO:0048471;perinuclear region of cytoplasm;0.000153306340731138!GO:0005525;GTP binding;0.000164379043960022!GO:0006091;generation of precursor metabolites and energy;0.000179983872413131!GO:0005912;adherens junction;0.00018833243135303!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000194345369615343!GO:0030532;small nuclear ribonucleoprotein complex;0.000197932165386055!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000202556925219245!GO:0005905;coated pit;0.00020886641499682!GO:0016491;oxidoreductase activity;0.000228504995333659!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000229478130906638!GO:0000245;spliceosome assembly;0.000230403786515528!GO:0005770;late endosome;0.000234681083832206!GO:0043566;structure-specific DNA binding;0.000244140745919381!GO:0006403;RNA localization;0.000245144329681873!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000270039901299431!GO:0000151;ubiquitin ligase complex;0.000270039901299431!GO:0051427;hormone receptor binding;0.000270039901299431!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000302313623293323!GO:0030016;myofibril;0.000303982232468482!GO:0050657;nucleic acid transport;0.000310550020436112!GO:0051236;establishment of RNA localization;0.000310550020436112!GO:0050658;RNA transport;0.000310550020436112!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000314580227015197!GO:0051188;cofactor biosynthetic process;0.000317649967041471!GO:0004298;threonine endopeptidase activity;0.000326359963673947!GO:0005791;rough endoplasmic reticulum;0.000365148849856759!GO:0006323;DNA packaging;0.000382028639824794!GO:0033116;ER-Golgi intermediate compartment membrane;0.000461729962323544!GO:0045786;negative regulation of progression through cell cycle;0.000477508174927872!GO:0019843;rRNA binding;0.000480589182121569!GO:0050789;regulation of biological process;0.000489203774649591!GO:0016070;RNA metabolic process;0.000502344611090374!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000507636540931857!GO:0004576;oligosaccharyl transferase activity;0.000535294379437612!GO:0035257;nuclear hormone receptor binding;0.000536203901755459!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000647956025543378!GO:0008250;oligosaccharyl transferase complex;0.000651776157564766!GO:0030658;transport vesicle membrane;0.000676588143102216!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000730672745782463!GO:0046930;pore complex;0.000743752465898265!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000764766820048582!GO:0031968;organelle outer membrane;0.000796493712843859!GO:0045892;negative regulation of transcription, DNA-dependent;0.000803192029256201!GO:0065002;intracellular protein transport across a membrane;0.000816321849720299!GO:0032561;guanyl ribonucleotide binding;0.00082191957377367!GO:0019001;guanyl nucleotide binding;0.00082191957377367!GO:0006650;glycerophospholipid metabolic process;0.000821980617383625!GO:0016197;endosome transport;0.000821980617383625!GO:0050794;regulation of cellular process;0.000901194810741359!GO:0016859;cis-trans isomerase activity;0.000902263313996733!GO:0019867;outer membrane;0.00095231195195597!GO:0009108;coenzyme biosynthetic process;0.000968219899423194!GO:0005741;mitochondrial outer membrane;0.0009884259106173!GO:0006950;response to stress;0.00105176899240251!GO:0007243;protein kinase cascade;0.00106659463119274!GO:0003697;single-stranded DNA binding;0.00112581790439321!GO:0030118;clathrin coat;0.00112686642362045!GO:0001558;regulation of cell growth;0.00116809864520835!GO:0031032;actomyosin structure organization and biogenesis;0.00127586433853535!GO:0042981;regulation of apoptosis;0.00130646397683164!GO:0030867;rough endoplasmic reticulum membrane;0.00130669844427602!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00133182866986528!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00136128805793423!GO:0006979;response to oxidative stress;0.00149478930166223!GO:0032446;protein modification by small protein conjugation;0.00151620676220678!GO:0043067;regulation of programmed cell death;0.00152838153832545!GO:0030017;sarcomere;0.00157005861696688!GO:0006752;group transfer coenzyme metabolic process;0.00157919566904172!GO:0007517;muscle development;0.00162233937896556!GO:0015630;microtubule cytoskeleton;0.00163580077007354!GO:0008154;actin polymerization and/or depolymerization;0.00166490768020652!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0016721659883407!GO:0004386;helicase activity;0.00171761071417054!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00179525858819418!GO:0015399;primary active transmembrane transporter activity;0.00179525858819418!GO:0009117;nucleotide metabolic process;0.00184588416789764!GO:0031589;cell-substrate adhesion;0.0018995077295344!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00193781657016472!GO:0006612;protein targeting to membrane;0.0020622320322235!GO:0001666;response to hypoxia;0.00210612437897835!GO:0005885;Arp2/3 protein complex;0.00218121142030917!GO:0035258;steroid hormone receptor binding;0.00221321015986151!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00221321015986151!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00221321015986151!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00221321015986151!GO:0019747;regulation of isoprenoid metabolic process;0.00223934494451589!GO:0051920;peroxiredoxin activity;0.00232164486090996!GO:0005083;small GTPase regulator activity;0.00235840744897547!GO:0043021;ribonucleoprotein binding;0.00254475348907306!GO:0005762;mitochondrial large ribosomal subunit;0.00255830823515404!GO:0000315;organellar large ribosomal subunit;0.00255830823515404!GO:0016567;protein ubiquitination;0.00256959024883862!GO:0044262;cellular carbohydrate metabolic process;0.00260867582963882!GO:0006333;chromatin assembly or disassembly;0.0026404064131017!GO:0016787;hydrolase activity;0.00264957848670908!GO:0051028;mRNA transport;0.00268418396334993!GO:0022890;inorganic cation transmembrane transporter activity;0.00269244861480005!GO:0051287;NAD binding;0.00271442413960717!GO:0008026;ATP-dependent helicase activity;0.002780444807105!GO:0001725;stress fiber;0.00278096332055327!GO:0032432;actin filament bundle;0.00278096332055327!GO:0007160;cell-matrix adhesion;0.00280535822479447!GO:0005048;signal sequence binding;0.00284489336093327!GO:0030660;Golgi-associated vesicle membrane;0.0028936633578041!GO:0005865;striated muscle thin filament;0.00293668731313564!GO:0030055;cell-matrix junction;0.0029488562497232!GO:0007265;Ras protein signal transduction;0.0029488562497232!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0029488562497232!GO:0004812;aminoacyl-tRNA ligase activity;0.0029488562497232!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0029488562497232!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00299652501500731!GO:0030518;steroid hormone receptor signaling pathway;0.00311370624542066!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0035473963776731!GO:0005924;cell-substrate adherens junction;0.00367391948838169!GO:0003724;RNA helicase activity;0.00382474330955319!GO:0005769;early endosome;0.00399747136290788!GO:0006891;intra-Golgi vesicle-mediated transport;0.00406537995519017!GO:0030127;COPII vesicle coat;0.00406537995519017!GO:0012507;ER to Golgi transport vesicle membrane;0.00406537995519017!GO:0003690;double-stranded DNA binding;0.00412642032848259!GO:0043623;cellular protein complex assembly;0.00417965235701296!GO:0030119;AP-type membrane coat adaptor complex;0.0044003359561661!GO:0045893;positive regulation of transcription, DNA-dependent;0.00443653239532285!GO:0046474;glycerophospholipid biosynthetic process;0.00448382016263558!GO:0030663;COPI coated vesicle membrane;0.00452263588426102!GO:0030126;COPI vesicle coat;0.00452263588426102!GO:0009966;regulation of signal transduction;0.00455354152581811!GO:0030134;ER to Golgi transport vesicle;0.00462969489327508!GO:0008286;insulin receptor signaling pathway;0.00489843667319575!GO:0045454;cell redox homeostasis;0.00499723324168605!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00506268931133385!GO:0009719;response to endogenous stimulus;0.00534753539940193!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00534753539940193!GO:0043038;amino acid activation;0.00535554805047914!GO:0006418;tRNA aminoacylation for protein translation;0.00535554805047914!GO:0043039;tRNA aminoacylation;0.00535554805047914!GO:0000139;Golgi membrane;0.00539099846571941!GO:0030131;clathrin adaptor complex;0.00539099846571941!GO:0018196;peptidyl-asparagine modification;0.005540280315363!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.005540280315363!GO:0000785;chromatin;0.005540280315363!GO:0006402;mRNA catabolic process;0.00567770259146877!GO:0006607;NLS-bearing substrate import into nucleus;0.00608627348798638!GO:0043492;ATPase activity, coupled to movement of substances;0.00623596523287366!GO:0030041;actin filament polymerization;0.00650177928535418!GO:0046467;membrane lipid biosynthetic process;0.00665483308483065!GO:0033673;negative regulation of kinase activity;0.00666861250274902!GO:0006469;negative regulation of protein kinase activity;0.00666861250274902!GO:0016568;chromatin modification;0.00686202061438237!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00693993002603669!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00697581282259565!GO:0031072;heat shock protein binding;0.00704068502655337!GO:0017166;vinculin binding;0.00734372910301353!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00738715980886539!GO:0051270;regulation of cell motility;0.00746032260757716!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0074868688520156!GO:0015002;heme-copper terminal oxidase activity;0.0074868688520156!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0074868688520156!GO:0004129;cytochrome-c oxidase activity;0.0074868688520156!GO:0005523;tropomyosin binding;0.00786345333314427!GO:0006414;translational elongation;0.00847768440338792!GO:0030031;cell projection biogenesis;0.00872430030232723!GO:0005774;vacuolar membrane;0.00872430030232723!GO:0006644;phospholipid metabolic process;0.00905872020257379!GO:0048522;positive regulation of cellular process;0.00906917070137284!GO:0007005;mitochondrion organization and biogenesis;0.00915477724283284!GO:0005862;muscle thin filament tropomyosin;0.00936025939185847!GO:0006974;response to DNA damage stimulus;0.00973266421829648!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00986922315947396!GO:0033043;regulation of organelle organization and biogenesis;0.00986922315947396!GO:0045941;positive regulation of transcription;0.0099890328192677!GO:0065004;protein-DNA complex assembly;0.00999134930984542!GO:0006892;post-Golgi vesicle-mediated transport;0.0103845644508227!GO:0030137;COPI-coated vesicle;0.0104141919630769!GO:0030384;phosphoinositide metabolic process;0.0104443045338614!GO:0016853;isomerase activity;0.0104808549915527!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0105788016333807!GO:0048500;signal recognition particle;0.0105821892509827!GO:0008610;lipid biosynthetic process;0.0108913210864308!GO:0042254;ribosome biogenesis and assembly;0.0109393275142596!GO:0051235;maintenance of localization;0.0110516073555636!GO:0007049;cell cycle;0.0111391062460122!GO:0043488;regulation of mRNA stability;0.0111391062460122!GO:0043487;regulation of RNA stability;0.0111391062460122!GO:0055001;muscle cell development;0.0112742697072364!GO:0030239;myofibril assembly;0.0112742697072364!GO:0055002;striated muscle cell development;0.0112742697072364!GO:0014706;striated muscle development;0.011513961197044!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0117020928733778!GO:0051276;chromosome organization and biogenesis;0.0117252636545748!GO:0051348;negative regulation of transferase activity;0.0118922675803735!GO:0030140;trans-Golgi network transport vesicle;0.0120015400337944!GO:0031674;I band;0.0121073272600683!GO:0006643;membrane lipid metabolic process;0.0121867256775348!GO:0030521;androgen receptor signaling pathway;0.0121867256775348!GO:0044420;extracellular matrix part;0.0122975411412002!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0126921338387907!GO:0003729;mRNA binding;0.0127008563517834!GO:0005581;collagen;0.0132154235036455!GO:0016584;nucleosome positioning;0.0133667522672173!GO:0005667;transcription factor complex;0.0133667522672173!GO:0030132;clathrin coat of coated pit;0.0135748464075965!GO:0003746;translation elongation factor activity;0.0135881372372127!GO:0012506;vesicle membrane;0.0138965452419086!GO:0045045;secretory pathway;0.0143747296013606!GO:0005925;focal adhesion;0.0144574153151143!GO:0051168;nuclear export;0.0147871368595612!GO:0042805;actinin binding;0.0161188548294111!GO:0030659;cytoplasmic vesicle membrane;0.0166998925349343!GO:0030125;clathrin vesicle coat;0.0172714652708846!GO:0030665;clathrin coated vesicle membrane;0.0172714652708846!GO:0030018;Z disc;0.0172714652708846!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0172970751966869!GO:0007040;lysosome organization and biogenesis;0.0172982728865497!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0174278137732214!GO:0046983;protein dimerization activity;0.0177139857777535!GO:0040008;regulation of growth;0.0180278018797702!GO:0019904;protein domain specific binding;0.0189951390724097!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.019089688591951!GO:0004667;prostaglandin-D synthase activity;0.019089688591951!GO:0050802;circadian sleep/wake cycle, sleep;0.019089688591951!GO:0022410;circadian sleep/wake cycle process;0.019089688591951!GO:0042749;regulation of circadian sleep/wake cycle;0.019089688591951!GO:0008139;nuclear localization sequence binding;0.0192723653758318!GO:0030522;intracellular receptor-mediated signaling pathway;0.0193130190918726!GO:0008287;protein serine/threonine phosphatase complex;0.0193130190918726!GO:0051087;chaperone binding;0.0197053226093164!GO:0046489;phosphoinositide biosynthetic process;0.0198681243064295!GO:0008186;RNA-dependent ATPase activity;0.0201332755263202!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0207003204678102!GO:0045047;protein targeting to ER;0.0207003204678102!GO:0043034;costamere;0.0216962339212726!GO:0051146;striated muscle cell differentiation;0.0218590854061496!GO:0005765;lysosomal membrane;0.0219224478637451!GO:0031902;late endosome membrane;0.0219553906671052!GO:0000902;cell morphogenesis;0.0220916449037078!GO:0032989;cellular structure morphogenesis;0.0220916449037078!GO:0017022;myosin binding;0.0223288363760889!GO:0005813;centrosome;0.0223995200554202!GO:0048518;positive regulation of biological process;0.0229221776068668!GO:0004197;cysteine-type endopeptidase activity;0.0245595110315138!GO:0007033;vacuole organization and biogenesis;0.025031345153013!GO:0006518;peptide metabolic process;0.0250896133451288!GO:0030695;GTPase regulator activity;0.0251312357852275!GO:0008601;protein phosphatase type 2A regulator activity;0.025399256019517!GO:0050811;GABA receptor binding;0.0254489892212032!GO:0045098;type III intermediate filament;0.0259646741135327!GO:0035035;histone acetyltransferase binding;0.0261150998745272!GO:0016126;sterol biosynthetic process;0.0261150998745272!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0264847323483612!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0269799599425317!GO:0005913;cell-cell adherens junction;0.0274290981489685!GO:0044437;vacuolar part;0.0276179031045527!GO:0006401;RNA catabolic process;0.0279398552247797!GO:0005815;microtubule organizing center;0.0279398552247797!GO:0007266;Rho protein signal transduction;0.0281512136065671!GO:0032535;regulation of cellular component size;0.0286385127089446!GO:0030832;regulation of actin filament length;0.0292981312662885!GO:0065007;biological regulation;0.0299486435752138!GO:0016301;kinase activity;0.0300407121164196!GO:0040011;locomotion;0.0305998571196982!GO:0008147;structural constituent of bone;0.0307623870204269!GO:0043681;protein import into mitochondrion;0.0315697411502412!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0321757741436915!GO:0044433;cytoplasmic vesicle part;0.0322535534982336!GO:0005100;Rho GTPase activator activity;0.0322535534982336!GO:0045792;negative regulation of cell size;0.0325100518742903!GO:0051271;negative regulation of cell motility;0.0328520849556006!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0328520849556006!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0328520849556006!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0329041904425909!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0329041904425909!GO:0040012;regulation of locomotion;0.0329758280051589!GO:0050178;phenylpyruvate tautomerase activity;0.0332447644213421!GO:0050681;androgen receptor binding;0.0332447644213421!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.033436343630739!GO:0005099;Ras GTPase activator activity;0.0338972877418413!GO:0000074;regulation of progression through cell cycle;0.0342826639273494!GO:0009607;response to biotic stimulus;0.0346251005460705!GO:0048487;beta-tubulin binding;0.0348994289194068!GO:0051726;regulation of cell cycle;0.0351527067308651!GO:0030100;regulation of endocytosis;0.0354615358027219!GO:0005869;dynactin complex;0.0357322479014837!GO:0051540;metal cluster binding;0.0357322479014837!GO:0051536;iron-sulfur cluster binding;0.0357322479014837!GO:0006693;prostaglandin metabolic process;0.0357322479014837!GO:0006692;prostanoid metabolic process;0.0357322479014837!GO:0000314;organellar small ribosomal subunit;0.0357322479014837!GO:0005763;mitochondrial small ribosomal subunit;0.0357322479014837!GO:0030308;negative regulation of cell growth;0.0366749045205417!GO:0005159;insulin-like growth factor receptor binding;0.0367628569162625!GO:0030235;nitric-oxide synthase regulator activity;0.0374882140673958!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0376109965833578!GO:0051252;regulation of RNA metabolic process;0.0389954329861657!GO:0003756;protein disulfide isomerase activity;0.0389954329861657!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0389954329861657!GO:0048154;S100 beta binding;0.0393335221055955!GO:0004185;serine carboxypeptidase activity;0.0404213030399149!GO:0015631;tubulin binding;0.0406204637558346!GO:0048468;cell development;0.0407887504528368!GO:0004563;beta-N-acetylhexosaminidase activity;0.0407930564941104!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0409151861859669!GO:0009967;positive regulation of signal transduction;0.0409151861859669!GO:0006509;membrane protein ectodomain proteolysis;0.0409416846831929!GO:0033619;membrane protein proteolysis;0.0409416846831929!GO:0005938;cell cortex;0.0413420960177113!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.041444041200742!GO:0019752;carboxylic acid metabolic process;0.0425310017180238!GO:0006376;mRNA splice site selection;0.042598869174335!GO:0000389;nuclear mRNA 3'-splice site recognition;0.042598869174335!GO:0006334;nucleosome assembly;0.0428736689788077!GO:0015992;proton transport;0.0442592666944253!GO:0006818;hydrogen transport;0.0445347037608243!GO:0016363;nuclear matrix;0.0445347037608243!GO:0004004;ATP-dependent RNA helicase activity;0.0459308394616011!GO:0014866;skeletal myofibril assembly;0.0465327835071187!GO:0008312;7S RNA binding;0.0466296016029887!GO:0031529;ruffle organization and biogenesis;0.0472056608890864!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0472056608890864!GO:0001516;prostaglandin biosynthetic process;0.0472056608890864!GO:0046457;prostanoid biosynthetic process;0.0472056608890864!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0472086110325814!GO:0031497;chromatin assembly;0.0474682223000084!GO:0004111;creatine kinase activity;0.0474682223000084!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0477773694701317!GO:0004784;superoxide dismutase activity;0.0477773694701317!GO:0009165;nucleotide biosynthetic process;0.0479445570998899!GO:0003702;RNA polymerase II transcription factor activity;0.0479967404244044!GO:0044255;cellular lipid metabolic process;0.0491852530703524!GO:0004364;glutathione transferase activity;0.0491894363087568!GO:0005784;translocon complex;0.0495613973062131!GO:0019902;phosphatase binding;0.0496574447772409 | |||
|sample_id=10197 | |sample_id=10197 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex=M | ||
|sample_species=Human (Homo sapiens) | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=AR:5.40744986391;XBP1:3.44722197096;TFAP2{A,C}:2.75236309476;GCM1,2:2.63607290971;HNF1A:2.55648198595;NR3C1:2.43308645624;ESR1:2.42014047088;SRF:2.33639971165;MYBL2:2.3228639958;NR1H4:2.24687273338;TFCP2:2.24171626307;PAX6:2.13230415696;MEF2{A,B,C,D}:2.09795635925;RFX2..5_RFXANK_RFXAP:1.88067404002;TLX1..3_NFIC{dimer}:1.8045148985;RFX1:1.80263753993;SMAD1..7,9:1.79293191753;SP1:1.63614546023;ATF6:1.5660004287;SNAI1..3:1.55983435774;PAX5:1.52753666716;MTF1:1.52662055889;MYFfamily:1.51716966762;ZIC1..3:1.5049063325;SOX5:1.4977472425;SPZ1:1.48168358063;HMX1:1.47130632934;FOX{D1,D2}:1.42258743834;MAZ:1.42124777438;PATZ1:1.38411144;TLX2:1.30940861867;GFI1B:1.29990910318;HIC1:1.2860848525;NKX3-2:1.27524908829;GATA4:1.26233843575;LEF1_TCF7_TCF7L1,2:1.23930844727;GTF2I:1.21378620294;MYOD1:1.2128847768;KLF4:1.16343133606;MZF1:1.16114319765;LMO2:1.12899906449;TFAP4:1.09833606166;ZNF423:1.09695929585;RXRA_VDR{dimer}:1.06326389448;ZEB1:1.05349344964;HBP1_HMGB_SSRP1_UBTF:1.05182272824;TBP:1.04972117208;ESRRA:1.04532516538;TFAP2B:1.02212029958;NR6A1:1.01099493534;IRF7:0.930685919914;RBPJ:0.911117768542;EP300:0.878743474897;EBF1:0.876598649259;SREBF1,2:0.863737101476;XCPE1{core}:0.86182887571;EVI1:0.848651947439;PRDM1:0.839753579838;TEAD1:0.83799432815;PDX1:0.825875959876;TEF:0.772325729248;RREB1:0.761208693257;EGR1..3:0.749382797344;FOXN1:0.71299610289;PAX1,9:0.687281241375;TGIF1:0.682324152502;FOXL1:0.676339114904;UFEwm:0.67496112821;MED-1{core}:0.674181516955;HNF4A_NR2F1,2:0.669318988309;MTE{core}:0.65635257381;BPTF:0.631071770308;NKX6-1,2:0.630902927948;NFATC1..3:0.625720171724;NHLH1,2:0.601494287367;IKZF2:0.560333905188;ZBTB6:0.550566162467;GTF2A1,2:0.539677695706;ATF2:0.52889205116;TBX4,5:0.508215370576;FOXO1,3,4:0.503737027755;HOX{A4,D4}:0.491113385759;RXR{A,B,G}:0.473396927908;IKZF1:0.473157664204;GZF1:0.447607147189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.435458064348;STAT2,4,6:0.429157497232;HAND1,2:0.410328564353;JUN:0.410066507993;TAL1_TCF{3,4,12}:0.36197584047;NFIX:0.347768006641;GLI1..3:0.316519356762;ZNF238:0.310526636609;FOXP1:0.306694386778;GFI1:0.285373489902;POU3F1..4:0.279030855749;STAT1,3:0.276278323492;NR5A1,2:0.252260008334;ZFP161:0.247856679956;TP53:0.235228704491;IRF1,2:0.230992235653;FOXD3:0.224907260476;EN1,2:0.218858070169;CDX1,2,4:0.214088655546;ZNF384:0.190134679913;NFE2L1:0.178992455661;FOXP3:0.155913578581;HLF:0.112365991742;FOXM1:0.0979789050539;TOPORS:0.0847341028595;ALX4:0.0695338919819;ETS1,2:0.0578695176095;FOXQ1:0.0539421037449;ZNF148:0.045726773944;POU6F1:0.0374671851951;ATF4:0.0246080654663;REST:0.00169892466976;LHX3,4:-0.00614015508316;NKX2-3_NKX2-5:-0.0277169945319;HMGA1,2:-0.0442373303918;CUX2:-0.0445956760841;HES1:-0.0586001381939;HSF1,2:-0.0879930127925;BREu{core}:-0.0949873086822;AIRE:-0.0980715306785;DBP:-0.108590064924;GATA6:-0.139867960062;NANOG{mouse}:-0.172592119459;POU5F1:-0.185956922786;SPI1:-0.192420647826;SPIB:-0.197004172888;HOX{A6,A7,B6,B7}:-0.205054471591;SOX2:-0.231595278893;PPARG:-0.245329497233;SOX17:-0.248079489842;T:-0.262495409701;CDC5L:-0.271062302129;CREB1:-0.287404447138;ZNF143:-0.312322993032;SOX{8,9,10}:-0.31756467132;NFY{A,B,C}:-0.341804932257;PITX1..3:-0.350408093092;MAFB:-0.386176146721;POU2F1..3:-0.403656651818;NRF1:-0.409531371411;NKX2-1,4:-0.463803731128;NKX2-2,8:-0.480712760378;ELF1,2,4:-0.495929596504;HIF1A:-0.541716510436;PBX1:-0.558518859839;PAX4:-0.567452744183;DMAP1_NCOR{1,2}_SMARC:-0.598715700081;PAX3,7:-0.637720472774;ELK1,4_GABP{A,B1}:-0.677918562504;YY1:-0.685493024197;NFE2:-0.693257401403;ATF5_CREB3:-0.702602047782;FOSL2:-0.717218225393;ZBTB16:-0.753213695246;HOX{A5,B5}:-0.769840332405;NFIL3:-0.770434213512;NFKB1_REL_RELA:-0.77704091575;RUNX1..3:-0.843871474623;ARID5B:-0.854754831127;RORA:-0.865410676027;BACH2:-0.87886229974;CEBPA,B_DDIT3:-0.882200012345;PAX2:-0.922441817724;HOXA9_MEIS1:-0.929337652582;AHR_ARNT_ARNT2:-0.92979028865;ALX1:-0.987038377249;E2F1..5:-0.998678188615;ADNP_IRX_SIX_ZHX:-1.01272606249;PRRX1,2:-1.04095313581;FOS_FOS{B,L1}_JUN{B,D}:-1.1054107611;FOX{I1,J2}:-1.12451923198;FOXA2:-1.12470342909;FOX{F1,F2,J1}:-1.14114263142;MYB:-1.14600554619;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.17263892807;NFE2L2:-1.20763384484;ONECUT1,2:-1.27139604198;bHLH_family:-1.29099363861;TFDP1:-1.31844676722;NKX3-1:-1.35112397248;POU1F1:-1.35398265134;NANOG:-1.41672786703;STAT5{A,B}:-1.67631502026;OCT4_SOX2{dimer}:-1.7914576476;VSX1,2:-1.84761609383;CRX:-2.13951032449;PAX8:-2.55776629638 | |top_motifs=AR:5.40744986391;XBP1:3.44722197096;TFAP2{A,C}:2.75236309476;GCM1,2:2.63607290971;HNF1A:2.55648198595;NR3C1:2.43308645624;ESR1:2.42014047088;SRF:2.33639971165;MYBL2:2.3228639958;NR1H4:2.24687273338;TFCP2:2.24171626307;PAX6:2.13230415696;MEF2{A,B,C,D}:2.09795635925;RFX2..5_RFXANK_RFXAP:1.88067404002;TLX1..3_NFIC{dimer}:1.8045148985;RFX1:1.80263753993;SMAD1..7,9:1.79293191753;SP1:1.63614546023;ATF6:1.5660004287;SNAI1..3:1.55983435774;PAX5:1.52753666716;MTF1:1.52662055889;MYFfamily:1.51716966762;ZIC1..3:1.5049063325;SOX5:1.4977472425;SPZ1:1.48168358063;HMX1:1.47130632934;FOX{D1,D2}:1.42258743834;MAZ:1.42124777438;PATZ1:1.38411144;TLX2:1.30940861867;GFI1B:1.29990910318;HIC1:1.2860848525;NKX3-2:1.27524908829;GATA4:1.26233843575;LEF1_TCF7_TCF7L1,2:1.23930844727;GTF2I:1.21378620294;MYOD1:1.2128847768;KLF4:1.16343133606;MZF1:1.16114319765;LMO2:1.12899906449;TFAP4:1.09833606166;ZNF423:1.09695929585;RXRA_VDR{dimer}:1.06326389448;ZEB1:1.05349344964;HBP1_HMGB_SSRP1_UBTF:1.05182272824;TBP:1.04972117208;ESRRA:1.04532516538;TFAP2B:1.02212029958;NR6A1:1.01099493534;IRF7:0.930685919914;RBPJ:0.911117768542;EP300:0.878743474897;EBF1:0.876598649259;SREBF1,2:0.863737101476;XCPE1{core}:0.86182887571;EVI1:0.848651947439;PRDM1:0.839753579838;TEAD1:0.83799432815;PDX1:0.825875959876;TEF:0.772325729248;RREB1:0.761208693257;EGR1..3:0.749382797344;FOXN1:0.71299610289;PAX1,9:0.687281241375;TGIF1:0.682324152502;FOXL1:0.676339114904;UFEwm:0.67496112821;MED-1{core}:0.674181516955;HNF4A_NR2F1,2:0.669318988309;MTE{core}:0.65635257381;BPTF:0.631071770308;NKX6-1,2:0.630902927948;NFATC1..3:0.625720171724;NHLH1,2:0.601494287367;IKZF2:0.560333905188;ZBTB6:0.550566162467;GTF2A1,2:0.539677695706;ATF2:0.52889205116;TBX4,5:0.508215370576;FOXO1,3,4:0.503737027755;HOX{A4,D4}:0.491113385759;RXR{A,B,G}:0.473396927908;IKZF1:0.473157664204;GZF1:0.447607147189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.435458064348;STAT2,4,6:0.429157497232;HAND1,2:0.410328564353;JUN:0.410066507993;TAL1_TCF{3,4,12}:0.36197584047;NFIX:0.347768006641;GLI1..3:0.316519356762;ZNF238:0.310526636609;FOXP1:0.306694386778;GFI1:0.285373489902;POU3F1..4:0.279030855749;STAT1,3:0.276278323492;NR5A1,2:0.252260008334;ZFP161:0.247856679956;TP53:0.235228704491;IRF1,2:0.230992235653;FOXD3:0.224907260476;EN1,2:0.218858070169;CDX1,2,4:0.214088655546;ZNF384:0.190134679913;NFE2L1:0.178992455661;FOXP3:0.155913578581;HLF:0.112365991742;FOXM1:0.0979789050539;TOPORS:0.0847341028595;ALX4:0.0695338919819;ETS1,2:0.0578695176095;FOXQ1:0.0539421037449;ZNF148:0.045726773944;POU6F1:0.0374671851951;ATF4:0.0246080654663;REST:0.00169892466976;LHX3,4:-0.00614015508316;NKX2-3_NKX2-5:-0.0277169945319;HMGA1,2:-0.0442373303918;CUX2:-0.0445956760841;HES1:-0.0586001381939;HSF1,2:-0.0879930127925;BREu{core}:-0.0949873086822;AIRE:-0.0980715306785;DBP:-0.108590064924;GATA6:-0.139867960062;NANOG{mouse}:-0.172592119459;POU5F1:-0.185956922786;SPI1:-0.192420647826;SPIB:-0.197004172888;HOX{A6,A7,B6,B7}:-0.205054471591;SOX2:-0.231595278893;PPARG:-0.245329497233;SOX17:-0.248079489842;T:-0.262495409701;CDC5L:-0.271062302129;CREB1:-0.287404447138;ZNF143:-0.312322993032;SOX{8,9,10}:-0.31756467132;NFY{A,B,C}:-0.341804932257;PITX1..3:-0.350408093092;MAFB:-0.386176146721;POU2F1..3:-0.403656651818;NRF1:-0.409531371411;NKX2-1,4:-0.463803731128;NKX2-2,8:-0.480712760378;ELF1,2,4:-0.495929596504;HIF1A:-0.541716510436;PBX1:-0.558518859839;PAX4:-0.567452744183;DMAP1_NCOR{1,2}_SMARC:-0.598715700081;PAX3,7:-0.637720472774;ELK1,4_GABP{A,B1}:-0.677918562504;YY1:-0.685493024197;NFE2:-0.693257401403;ATF5_CREB3:-0.702602047782;FOSL2:-0.717218225393;ZBTB16:-0.753213695246;HOX{A5,B5}:-0.769840332405;NFIL3:-0.770434213512;NFKB1_REL_RELA:-0.77704091575;RUNX1..3:-0.843871474623;ARID5B:-0.854754831127;RORA:-0.865410676027;BACH2:-0.87886229974;CEBPA,B_DDIT3:-0.882200012345;PAX2:-0.922441817724;HOXA9_MEIS1:-0.929337652582;AHR_ARNT_ARNT2:-0.92979028865;ALX1:-0.987038377249;E2F1..5:-0.998678188615;ADNP_IRX_SIX_ZHX:-1.01272606249;PRRX1,2:-1.04095313581;FOS_FOS{B,L1}_JUN{B,D}:-1.1054107611;FOX{I1,J2}:-1.12451923198;FOXA2:-1.12470342909;FOX{F1,F2,J1}:-1.14114263142;MYB:-1.14600554619;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.17263892807;NFE2L2:-1.20763384484;ONECUT1,2:-1.27139604198;bHLH_family:-1.29099363861;TFDP1:-1.31844676722;NKX3-1:-1.35112397248;POU1F1:-1.35398265134;NANOG:-1.41672786703;STAT5{A,B}:-1.67631502026;OCT4_SOX2{dimer}:-1.7914576476;VSX1,2:-1.84761609383;CRX:-2.13951032449;PAX8:-2.55776629638 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10197-103E8;search_select_hide=table117:FF:10197-103E8 | |||
}} | }} | ||
Latest revision as of 18:15, 3 June 2020
| Name: | epididymis, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12847 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12847
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12847
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0578 |
| 10 | 10 | 0.0491 |
| 100 | 100 | 0.222 |
| 101 | 101 | 0.849 |
| 102 | 102 | 0.376 |
| 103 | 103 | 0.249 |
| 104 | 104 | 0.258 |
| 105 | 105 | 0.439 |
| 106 | 106 | 0.911 |
| 107 | 107 | 0.192 |
| 108 | 108 | 0.847 |
| 109 | 109 | 0.0476 |
| 11 | 11 | 0.138 |
| 110 | 110 | 0.204 |
| 111 | 111 | 0.0475 |
| 112 | 112 | 0.382 |
| 113 | 113 | 0.844 |
| 114 | 114 | 0.0739 |
| 115 | 115 | 0.435 |
| 116 | 116 | 0.525 |
| 117 | 117 | 0.0355 |
| 118 | 118 | 0.159 |
| 119 | 119 | 0.754 |
| 12 | 12 | 0.706 |
| 120 | 120 | 0.274 |
| 121 | 121 | 0.907 |
| 122 | 122 | 1 |
| 123 | 123 | 0.0224 |
| 124 | 124 | 0.428 |
| 125 | 125 | 0.14 |
| 126 | 126 | 0.367 |
| 127 | 127 | 0.21 |
| 128 | 128 | 0.45 |
| 129 | 129 | 0.914 |
| 13 | 13 | 0.159 |
| 130 | 130 | 0.436 |
| 131 | 131 | 0.943 |
| 132 | 132 | 0.114 |
| 133 | 133 | 0.211 |
| 134 | 134 | 0.485 |
| 135 | 135 | 0.13 |
| 136 | 136 | 0.69 |
| 137 | 137 | 0.568 |
| 138 | 138 | 0.814 |
| 139 | 139 | 0.539 |
| 14 | 14 | 0.861 |
| 140 | 140 | 0.988 |
| 141 | 141 | 0.801 |
| 142 | 142 | 0.873 |
| 143 | 143 | 0.00126 |
| 144 | 144 | 0.484 |
| 145 | 145 | 0.282 |
| 146 | 146 | 0.787 |
| 147 | 147 | 0.475 |
| 148 | 148 | 0.311 |
| 149 | 149 | 0.222 |
| 15 | 15 | 0.0898 |
| 150 | 150 | 0.369 |
| 151 | 151 | 0.793 |
| 152 | 152 | 0.202 |
| 153 | 153 | 0.495 |
| 154 | 154 | 0.247 |
| 155 | 155 | 0.914 |
| 156 | 156 | 0.978 |
| 157 | 157 | 0.856 |
| 158 | 158 | 0.313 |
| 159 | 159 | 0.292 |
| 16 | 16 | 0.82 |
| 160 | 160 | 0.301 |
| 161 | 161 | 0.914 |
| 162 | 162 | 0.787 |
| 163 | 163 | 0.193 |
| 164 | 164 | 0.365 |
| 165 | 165 | 0.174 |
| 166 | 166 | 0.188 |
| 167 | 167 | 0.0251 |
| 168 | 168 | 0.455 |
| 169 | 169 | 0.24 |
| 17 | 17 | 0.464 |
| 18 | 18 | 0.0245 |
| 19 | 19 | 0.284 |
| 2 | 2 | 0.0131 |
| 20 | 20 | 0.0367 |
| 21 | 21 | 0.41 |
| 22 | 22 | 0.72 |
| 23 | 23 | 0.724 |
| 24 | 24 | 0.558 |
| 25 | 25 | 0.402 |
| 26 | 26 | 0.063 |
| 27 | 27 | 0.677 |
| 28 | 28 | 0.603 |
| 29 | 29 | 0.0185 |
| 3 | 3 | 0.217 |
| 30 | 30 | 0.0356 |
| 31 | 31 | 0.957 |
| 32 | 32 | 0.376 |
| 33 | 33 | 0.106 |
| 34 | 34 | 0.29 |
| 35 | 35 | 0.384 |
| 36 | 36 | 0.00716 |
| 37 | 37 | 0.279 |
| 38 | 38 | 0.539 |
| 39 | 39 | 0.295 |
| 4 | 4 | 0.255 |
| 40 | 40 | 0.0858 |
| 41 | 41 | 0.0376 |
| 42 | 42 | 0.122 |
| 43 | 43 | 0.164 |
| 44 | 44 | 0.459 |
| 45 | 45 | 0.178 |
| 46 | 46 | 0.183 |
| 47 | 47 | 0.252 |
| 48 | 48 | 0.378 |
| 49 | 49 | 0.0674 |
| 5 | 5 | 0.205 |
| 50 | 50 | 0.659 |
| 51 | 51 | 0.473 |
| 52 | 52 | 0.142 |
| 53 | 53 | 0.805 |
| 54 | 54 | 0.789 |
| 55 | 55 | 0.912 |
| 56 | 56 | 0.834 |
| 57 | 57 | 0.208 |
| 58 | 58 | 0.653 |
| 59 | 59 | 0.815 |
| 6 | 6 | 0.772 |
| 60 | 60 | 0.607 |
| 61 | 61 | 0.823 |
| 62 | 62 | 0.404 |
| 63 | 63 | 0.754 |
| 64 | 64 | 0.347 |
| 65 | 65 | 0.609 |
| 66 | 66 | 0.0103 |
| 67 | 67 | 0.511 |
| 68 | 68 | 0.902 |
| 69 | 69 | 0.997 |
| 7 | 7 | 0.377 |
| 70 | 70 | 0.133 |
| 71 | 71 | 0.0662 |
| 72 | 72 | 0.86 |
| 73 | 73 | 0.334 |
| 74 | 74 | 0.616 |
| 75 | 75 | 0.0109 |
| 76 | 76 | 0.0257 |
| 77 | 77 | 0.117 |
| 78 | 78 | 0.0473 |
| 79 | 79 | 0.845 |
| 8 | 8 | 0.369 |
| 80 | 80 | 0.753 |
| 81 | 81 | 0.954 |
| 82 | 82 | 0.55 |
| 83 | 83 | 0.769 |
| 84 | 84 | 0.98 |
| 85 | 85 | 0.734 |
| 86 | 86 | 0.834 |
| 87 | 87 | 0.504 |
| 88 | 88 | 0.902 |
| 89 | 89 | 0.567 |
| 9 | 9 | 0.579 |
| 90 | 90 | 0.0291 |
| 91 | 91 | 0.619 |
| 92 | 92 | 0.636 |
| 93 | 93 | 0.216 |
| 94 | 94 | 0.0757 |
| 95 | 95 | 0.0315 |
| 96 | 96 | 0.751 |
| 97 | 97 | 0.846 |
| 98 | 98 | 0.594 |
| 99 | 99 | 0.24 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12847
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0011289 epididymis- adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001301 (epididymis)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011289 (epididymis- adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)
