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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005945
|DRA_sample_Accession=CAGE@SAMD00005945
|accession_numbers=CAGE;DRX008096;DRR008968;DRZ000393;DRZ001778
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005945
|accession_numbers=CAGE;DRX008096;DRR008968;DRZ000393;DRZ001778;DRZ011743;DRZ013128
|accession_numbers_RNASeq=sRNA-Seq;DRX037212;DRR041578;DRZ007220
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002617
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002617
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:47279504..47279563,+!p1@NR1H3!1.91!174.49!NR1H3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.78!58.66!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.66!50.31!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.62!40.89!HOXC8;;chr7:73038839..73038862,-!p1@MLXIPL!1.57!36.18!MLXIPL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.11!ZBED1;;chr19:33793430..33793447,-!p1@CEBPA!1.55!141.73!CEBPA;;chr7:19157248..19157268,-!p1@TWIST1!1.45!72.79!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.39!58.02!EBF1;;chr15:42749722..42749739,-!p2@ZFP106!1.38!40.46!ZFP106;;chr3:12330560..12330579,+!p1@PPARG!1.35!24.62!PPARG;;chr4:174451370..174451387,-!p1@HAND2!1.33!20.55!HAND2;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.34!NPAS1;;chr2:119605214..119605230,-!p1@EN1!1.32!19.91!EN1;;chr2:239756671..239756732,+!p1@TWIST2!1.25!53.10!TWIST2;;chr3:126076242..126076257,-!p1@KLF15!1.25!20.77!KLF15;;chr9:132427883..132427951,+!p2@PRRX2!1.23!15.84!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.22!59.31!TSC22D3;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.48!ZBTB16;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.21!15.20!HOXC5;;chr12:54402790..54402805,+!p2@HOXC8!1.20!14.77!HOXC8;;chr17:46675469..46675481,-!p4@HOXB6!1.18!14.13!HOXB6;;chr17:17726907..17726958,-!p2@SREBF1!1.17!85.00!SREBF1;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.56!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.15!17.98!PRRX1;;chr17:46675420..46675465,-!p3@HOXB6!1.15!14.99!HOXB6;;chr3:12392991..12393030,+!p7@PPARG!1.13!12.42!PPARG;;chr5:92918919..92918942,+!p1@NR2F1!1.11!53.53!NR2F1;;chr12:54394309..54394336,+!p2@HOXC9!1.09!11.35!HOXC9;;chr3:126076264..126076305,-!p2@KLF15!1.08!15.42!KLF15;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!54.60!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!1.06!10.49!HOXC8;;chr2:239756739..239756755,+!p2@TWIST2!1.05!17.77!TWIST2;;chr12:54393880..54393962,+!p1@HOXC9!1.04!10.06!HOXC9;;chr12:54779511..54779577,-!p5@ZNF385A!1.04!10.06!ZNF385A;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!265.48!TSC22D3;;chr17:46682321..46682362,-!p1@HOXB6!1.03!9.63!HOXB6;;chr3:12392932..12392962,+!p8@PPARG!1.02!9.42!PPARG;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.42!HAND2;;chr13:41240717..41240735,-!p2@FOXO1!1.01!63.80!FOXO1;;chr4:4861385..4861398,+!p1@MSX1!1.01!27.83!MSX1;;chr14:62203595..62203676,+!p4@HIF1A!1.01!17.34!HIF1A;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.71!PRRX1;;chr18:53068911..53068935,-!p4@TCF4!1.00!10.28!TCF4;;chr10:131762504..131762555,-!p1@EBF3!1.00!8.99!EBF3;;chr2:176994408..176994492,+!p1@HOXD8!1.00!8.99!HOXD8;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.42!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.98!8.56!PRRX1;;chr1:23885981..23886002,-!p1@ID3!0.97!1488.64!ID3;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.55!OSR1;;chr22:39916888..39916894,+!p12@ATF4!0.97!8.35!ATF4;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.14!HOXB8;;chr10:51572408..51572454,+!p3@NCOA4!0.95!47.53!NCOA4;;chr17:17726892..17726903,-!p6@SREBF1!0.95!8.99!SREBF1;;chr3:157823517..157823562,-!p1@SHOX2!0.94!8.35!SHOX2;;chr8:49833948..49833973,-!p2@SNAI2!0.93!50.10!SNAI2;;chr7:27192185..27192209,-!p1@HOXA3!0.92!7.28!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.92!7.28!HOXA9;;chr17:17723626..17723663,-!p4@SREBF1!0.91!14.99!SREBF1;;chr10:28034739..28034756,-!p1@MKX!0.91!7.07!MKX;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.12!SIX1;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.13!TWIST1;;chr5:92918956..92918969,+!p4@NR2F1!0.88!7.28!NR2F1;;chr5:2751762..2751784,-!p1@IRX2!0.88!6.64!IRX2;;chr19:50432453..50432468,+!p1@ATF5!0.87!378.74!ATF5;;chr19:13136241..13136258,+!p7@NFIX!0.87!8.78!NFIX;;chr17:17723746..17723766,-!p5@SREBF1!0.86!10.49!SREBF1;;chr11:113930401..113930422,+!p3@ZBTB16!0.86!6.21!ZBTB16;;chr20:39317868..39317884,-!p1@MAFB!0.85!77.72!MAFB;;chr2:46602901..46602926,+!p7@EPAS1!0.85!8.35!EPAS1;;chr3:12329397..12329433,+!p2@PPARG!0.84!14.13!PPARG;;chr5:92919100..92919135,+!p3@NR2F1!0.84!7.28!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!0.84!5.99!HIF3A;;chr2:46612891..46612907,+!p10@EPAS1!0.84!5.99!EPAS1;;chr12:54422217..54422239,+!p3@HOXC6!0.84!5.99!HOXC6;;chr15:96873984..96873999,+!p3@NR2F2!0.83!45.60!NR2F2;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.85!ATOH8;;chr19:50435736..50435781,+!p3@ATF5!0.83!8.14!ATF5;;chr10:114889016..114889037,+!p15@TCF7L2!0.83!5.78!TCF7L2;;chr12:54410948..54410992,+!p3@HOXC5!0.83!5.78!HOXC5;;chr5:76382989..76383001,-!p4@ZBED3!0.83!5.78!ZBED3;;chr7:27196217..27196246,-!p2@HOXA7!0.83!5.78!HOXA7;;chr16:31076332..31076388,-!p3@ZNF668!0.83!5.78!ZNF668;;chr8:49833978..49833996,-!p1@SNAI2!0.82!125.68!SNAI2;;chr5:72744594..72744609,-!p1@FOXD1!0.82!27.40!FOXD1;;chr14:89628064..89628109,-!p4@FOXN3!0.82!11.99!FOXN3;;chr11:46299539..46299620,+!p2@CREB3L1!0.82!9.85!CREB3L1;;chr8:99956662..99956684,+!p1@OSR2!0.82!8.99!OSR2;;chr7:73038867..73038878,-!p2@MLXIPL!0.82!5.57!MLXIPL;;chr10:31610110..31610159,+!p2@ZEB1!0.82!5.57!ZEB1;;chr2:119604456..119604501,-!p2@EN1!0.82!5.57!EN1;;chr7:44143925..44143970,+!p1@AEBP1!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002617;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520breast%252c%2520donor2.CNhs11969.11327-117E4.hg38.nobarcode.ctss.bed.gz
|id=FF:11327-117E4
|id=FF:11327-117E4
|is_a=EFO:0002091;;FF:0000156
|is_a=EFO:0002091;;FF:0000156
|is_obsolete=
|is_obsolete=
|library_id=CNhs11969
|library_id=CNhs11969
|library_id_phase_based=1:CNhs11969
|library_id_phase_based=2:CNhs11969
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11327
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GGCTAC.11327
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11327
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GGCTAC.11327
|name=Adipocyte - breast, donor2
|name=Adipocyte - breast, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11969,LSID836,release011,COMPLETED
|profile_hcage=CNhs11969,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 80:
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|sample_age=40
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=UFEwm:3.29202529355;NKX2-2,8:2.53008806103;XBP1:2.5124753983;GZF1:2.49884340124;EBF1:2.47762019469;ALX4:2.21640352506;HES1:2.09650847649;PAX1,9:2.04715952084;FOXL1:2.03637870219;IKZF1:1.98967453748;KLF4:1.89825464021;EVI1:1.88205620394;ZNF238:1.76022077476;ESR1:1.75391572021;ESRRA:1.71897679908;RXR{A,B,G}:1.70782246857;NFE2L1:1.66810902382;GLI1..3:1.59477163576;AR:1.53679904683;NKX3-1:1.48880382822;SRF:1.45727629236;TEF:1.39807646537;GATA4:1.37436732821;ARID5B:1.35216836655;HIF1A:1.34579383607;NKX2-1,4:1.3311939593;ATF6:1.31028373294;NR1H4:1.3066820592;ZNF423:1.28192565273;GCM1,2:1.2619937505;MYBL2:1.24399297645;RXRA_VDR{dimer}:1.24314502634;TFAP4:1.20414372549;TEAD1:1.20261491938;NR6A1:1.1596934436;HOX{A5,B5}:1.15030141445;TP53:1.06256969069;NKX3-2:1.06208684603;MAFB:1.04460889546;TFCP2:1.04064192691;EN1,2:1.0405860261;HMX1:1.03469498756;NR3C1:1.02721306295;FOXO1,3,4:0.929738613795;SMAD1..7,9:0.856653324745;bHLH_family:0.854366469761;TLX1..3_NFIC{dimer}:0.852991201486;MTE{core}:0.808474983182;TAL1_TCF{3,4,12}:0.772287980356;NANOG{mouse}:0.726873859319;MAZ:0.703399662598;DBP:0.682439736656;TFAP2{A,C}:0.649372775308;STAT2,4,6:0.634385354214;FOXD3:0.633158004573;HOX{A4,D4}:0.625587271348;GTF2I:0.584116595707;FOXP3:0.568593402643;HMGA1,2:0.55917795336;MTF1:0.535185537634;TFAP2B:0.512589589259;LHX3,4:0.50262607284;NFATC1..3:0.494082885254;HNF4A_NR2F1,2:0.488937441223;MYFfamily:0.455301029414;GFI1B:0.434293852692;TBP:0.427837126455;GTF2A1,2:0.421193848729;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.420417032038;PAX5:0.406437372021;FOXA2:0.405767924343;HIC1:0.383120348616;ZBTB6:0.376813988295;MYB:0.305552843748;AIRE:0.297176900498;POU6F1:0.285923038984;NHLH1,2:0.25348945749;STAT1,3:0.244598400325;CDC5L:0.243319440174;HOXA9_MEIS1:0.175725103513;TBX4,5:0.167178569392;SPZ1:0.148963421848;ZNF148:0.143424648267;HLF:0.124180447695;ZIC1..3:0.0934828822319;RREB1:0.0878960480112;MZF1:0.0798589190047;TOPORS:0.0723842338255;HSF1,2:0.0673826546928;PATZ1:0.064678417746;PAX2:0.0609871925659;YY1:0.0505934567163;HAND1,2:0.0389716416845;SREBF1,2:0.00598250219923;REST:0.00267155103819;PPARG:-0.0431265237589;NFE2L2:-0.0572732851737;SP1:-0.0630932510267;T:-0.0670015395635;SOX5:-0.0779456175335;HNF1A:-0.101557384648;NR5A1,2:-0.101884014972;TGIF1:-0.15368390966;PAX4:-0.162941097425;CEBPA,B_DDIT3:-0.173688706154;EGR1..3:-0.182616199884;PRDM1:-0.186183778499;MEF2{A,B,C,D}:-0.191980601561;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20924317196;IKZF2:-0.230276217047;PAX3,7:-0.247085728959;EP300:-0.25554462299;GFI1:-0.277164252546;XCPE1{core}:-0.292162547944;IRF1,2:-0.295268911382;ZNF384:-0.304996304583;ZNF143:-0.336145443742;NFIL3:-0.342348473164;NFE2:-0.363943602761;BACH2:-0.385579459497;TLX2:-0.452513019882;FOSL2:-0.454857481869;DMAP1_NCOR{1,2}_SMARC:-0.469480257085;ZBTB16:-0.488151134899;PAX6:-0.488478031856;NFY{A,B,C}:-0.504827468853;ELK1,4_GABP{A,B1}:-0.517894869176;STAT5{A,B}:-0.534782069901;MED-1{core}:-0.53481409083;NRF1:-0.536525752667;FOS_FOS{B,L1}_JUN{B,D}:-0.552277188012;SOX17:-0.572568646914;ONECUT1,2:-0.584309035647;NKX6-1,2:-0.60527521983;OCT4_SOX2{dimer}:-0.61009882809;NFIX:-0.623011502829;PITX1..3:-0.627048122036;RUNX1..3:-0.653944485502;PDX1:-0.658768268645;BPTF:-0.65980363875;FOX{D1,D2}:-0.667290623868;NFKB1_REL_RELA:-0.672448472566;LMO2:-0.681252692402;SPI1:-0.687548234858;RORA:-0.695856258589;HOX{A6,A7,B6,B7}:-0.706687380692;BREu{core}:-0.79093234817;HBP1_HMGB_SSRP1_UBTF:-0.793750144814;SNAI1..3:-0.79996741536;ATF5_CREB3:-0.823614629301;ATF4:-0.825098581825;ZFP161:-0.838278840316;ETS1,2:-0.838912619238;SPIB:-0.849226713585;POU3F1..4:-0.850869214046;FOXM1:-0.862488116658;RFX2..5_RFXANK_RFXAP:-0.899304450647;FOXP1:-0.914198833629;RFX1:-0.94169556003;JUN:-0.948139799406;NKX2-3_NKX2-5:-0.956292422429;TFDP1:-0.956643750649;ELF1,2,4:-1.00733862352;E2F1..5:-1.01284311435;CREB1:-1.03136429191;ZEB1:-1.04745332759;IRF7:-1.08878861584;PAX8:-1.094230536;ADNP_IRX_SIX_ZHX:-1.14298589747;GATA6:-1.17920620155;CDX1,2,4:-1.18785057238;LEF1_TCF7_TCF7L1,2:-1.19128550815;AHR_ARNT_ARNT2:-1.23325197687;RBPJ:-1.24021952963;MYOD1:-1.24637406527;SOX2:-1.26026822583;PRRX1,2:-1.28794984646;FOX{I1,J2}:-1.30720133276;SOX{8,9,10}:-1.31006962319;ATF2:-1.36655236242;POU1F1:-1.37430478004;FOXN1:-1.49643053792;POU5F1:-1.56777982474;CUX2:-1.624103585;POU2F1..3:-1.66844531589;CRX:-1.7762082247;VSX1,2:-1.97959116996;FOX{F1,F2,J1}:-1.99083452837;PBX1:-2.05683308361;FOXQ1:-2.1226400613;ALX1:-2.19908570026;NANOG:-2.24665371426
|top_motifs=UFEwm:3.29202529355;NKX2-2,8:2.53008806103;XBP1:2.5124753983;GZF1:2.49884340124;EBF1:2.47762019469;ALX4:2.21640352506;HES1:2.09650847649;PAX1,9:2.04715952084;FOXL1:2.03637870219;IKZF1:1.98967453748;KLF4:1.89825464021;EVI1:1.88205620394;ZNF238:1.76022077476;ESR1:1.75391572021;ESRRA:1.71897679908;RXR{A,B,G}:1.70782246857;NFE2L1:1.66810902382;GLI1..3:1.59477163576;AR:1.53679904683;NKX3-1:1.48880382822;SRF:1.45727629236;TEF:1.39807646537;GATA4:1.37436732821;ARID5B:1.35216836655;HIF1A:1.34579383607;NKX2-1,4:1.3311939593;ATF6:1.31028373294;NR1H4:1.3066820592;ZNF423:1.28192565273;GCM1,2:1.2619937505;MYBL2:1.24399297645;RXRA_VDR{dimer}:1.24314502634;TFAP4:1.20414372549;TEAD1:1.20261491938;NR6A1:1.1596934436;HOX{A5,B5}:1.15030141445;TP53:1.06256969069;NKX3-2:1.06208684603;MAFB:1.04460889546;TFCP2:1.04064192691;EN1,2:1.0405860261;HMX1:1.03469498756;NR3C1:1.02721306295;FOXO1,3,4:0.929738613795;SMAD1..7,9:0.856653324745;bHLH_family:0.854366469761;TLX1..3_NFIC{dimer}:0.852991201486;MTE{core}:0.808474983182;TAL1_TCF{3,4,12}:0.772287980356;NANOG{mouse}:0.726873859319;MAZ:0.703399662598;DBP:0.682439736656;TFAP2{A,C}:0.649372775308;STAT2,4,6:0.634385354214;FOXD3:0.633158004573;HOX{A4,D4}:0.625587271348;GTF2I:0.584116595707;FOXP3:0.568593402643;HMGA1,2:0.55917795336;MTF1:0.535185537634;TFAP2B:0.512589589259;LHX3,4:0.50262607284;NFATC1..3:0.494082885254;HNF4A_NR2F1,2:0.488937441223;MYFfamily:0.455301029414;GFI1B:0.434293852692;TBP:0.427837126455;GTF2A1,2:0.421193848729;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.420417032038;PAX5:0.406437372021;FOXA2:0.405767924343;HIC1:0.383120348616;ZBTB6:0.376813988295;MYB:0.305552843748;AIRE:0.297176900498;POU6F1:0.285923038984;NHLH1,2:0.25348945749;STAT1,3:0.244598400325;CDC5L:0.243319440174;HOXA9_MEIS1:0.175725103513;TBX4,5:0.167178569392;SPZ1:0.148963421848;ZNF148:0.143424648267;HLF:0.124180447695;ZIC1..3:0.0934828822319;RREB1:0.0878960480112;MZF1:0.0798589190047;TOPORS:0.0723842338255;HSF1,2:0.0673826546928;PATZ1:0.064678417746;PAX2:0.0609871925659;YY1:0.0505934567163;HAND1,2:0.0389716416845;SREBF1,2:0.00598250219923;REST:0.00267155103819;PPARG:-0.0431265237589;NFE2L2:-0.0572732851737;SP1:-0.0630932510267;T:-0.0670015395635;SOX5:-0.0779456175335;HNF1A:-0.101557384648;NR5A1,2:-0.101884014972;TGIF1:-0.15368390966;PAX4:-0.162941097425;CEBPA,B_DDIT3:-0.173688706154;EGR1..3:-0.182616199884;PRDM1:-0.186183778499;MEF2{A,B,C,D}:-0.191980601561;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20924317196;IKZF2:-0.230276217047;PAX3,7:-0.247085728959;EP300:-0.25554462299;GFI1:-0.277164252546;XCPE1{core}:-0.292162547944;IRF1,2:-0.295268911382;ZNF384:-0.304996304583;ZNF143:-0.336145443742;NFIL3:-0.342348473164;NFE2:-0.363943602761;BACH2:-0.385579459497;TLX2:-0.452513019882;FOSL2:-0.454857481869;DMAP1_NCOR{1,2}_SMARC:-0.469480257085;ZBTB16:-0.488151134899;PAX6:-0.488478031856;NFY{A,B,C}:-0.504827468853;ELK1,4_GABP{A,B1}:-0.517894869176;STAT5{A,B}:-0.534782069901;MED-1{core}:-0.53481409083;NRF1:-0.536525752667;FOS_FOS{B,L1}_JUN{B,D}:-0.552277188012;SOX17:-0.572568646914;ONECUT1,2:-0.584309035647;NKX6-1,2:-0.60527521983;OCT4_SOX2{dimer}:-0.61009882809;NFIX:-0.623011502829;PITX1..3:-0.627048122036;RUNX1..3:-0.653944485502;PDX1:-0.658768268645;BPTF:-0.65980363875;FOX{D1,D2}:-0.667290623868;NFKB1_REL_RELA:-0.672448472566;LMO2:-0.681252692402;SPI1:-0.687548234858;RORA:-0.695856258589;HOX{A6,A7,B6,B7}:-0.706687380692;BREu{core}:-0.79093234817;HBP1_HMGB_SSRP1_UBTF:-0.793750144814;SNAI1..3:-0.79996741536;ATF5_CREB3:-0.823614629301;ATF4:-0.825098581825;ZFP161:-0.838278840316;ETS1,2:-0.838912619238;SPIB:-0.849226713585;POU3F1..4:-0.850869214046;FOXM1:-0.862488116658;RFX2..5_RFXANK_RFXAP:-0.899304450647;FOXP1:-0.914198833629;RFX1:-0.94169556003;JUN:-0.948139799406;NKX2-3_NKX2-5:-0.956292422429;TFDP1:-0.956643750649;ELF1,2,4:-1.00733862352;E2F1..5:-1.01284311435;CREB1:-1.03136429191;ZEB1:-1.04745332759;IRF7:-1.08878861584;PAX8:-1.094230536;ADNP_IRX_SIX_ZHX:-1.14298589747;GATA6:-1.17920620155;CDX1,2,4:-1.18785057238;LEF1_TCF7_TCF7L1,2:-1.19128550815;AHR_ARNT_ARNT2:-1.23325197687;RBPJ:-1.24021952963;MYOD1:-1.24637406527;SOX2:-1.26026822583;PRRX1,2:-1.28794984646;FOX{I1,J2}:-1.30720133276;SOX{8,9,10}:-1.31006962319;ATF2:-1.36655236242;POU1F1:-1.37430478004;FOXN1:-1.49643053792;POU5F1:-1.56777982474;CUX2:-1.624103585;POU2F1..3:-1.66844531589;CRX:-1.7762082247;VSX1,2:-1.97959116996;FOX{F1,F2,J1}:-1.99083452837;PBX1:-2.05683308361;FOXQ1:-2.1226400613;ALX1:-2.19908570026;NANOG:-2.24665371426
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11327-117E4;search_select_hide=table117:FF:11327-117E4
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Adipocyte - breast, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11969
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage40 years old adult
sexfemale
age40
cell typeadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005945
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11969 CAGE DRX008096 DRR008968
Accession ID Hg19

Library idBAMCTSS
CNhs11969 DRZ000393 DRZ001778
Accession ID Hg38

Library idBAMCTSS
CNhs11969 DRZ011743 DRZ013128
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005945
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GGCTAC sRNA-Seq DRX037212 DRR041578
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GGCTAC DRZ007220


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.285
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.203
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.155
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0843
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose1.201
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.136
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.462
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0843
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.613
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.376
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose1.027
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.566
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.215
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0843
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0284
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal1.018
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.451
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.155
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.337
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.883
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.343
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.497
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.686
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.215
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.433
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.215
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.9
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.946
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.497
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.95
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.168
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.918
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11969

Jaspar motifP-value
MA0002.20.319
MA0003.10.205
MA0004.10.564
MA0006.10.0823
MA0007.10.303
MA0009.10.427
MA0014.10.618
MA0017.10.638
MA0018.26.38206e-6
MA0019.10.22
MA0024.10.00113
MA0025.10.00463
MA0027.10.687
MA0028.10.00443
MA0029.10.498
MA0030.10.0587
MA0031.10.117
MA0035.20.0127
MA0038.10.0722
MA0039.20.0428
MA0040.10.642
MA0041.10.611
MA0042.10.993
MA0043.13.25716e-5
MA0046.10.132
MA0047.20.588
MA0048.10.314
MA0050.11.09709e-4
MA0051.10.00783
MA0052.10.237
MA0055.10.911
MA0057.10.187
MA0058.10.481
MA0059.10.781
MA0060.15.46434e-5
MA0061.10.00137
MA0062.22.29566e-10
MA0065.20.0519
MA0066.10.376
MA0067.10.0215
MA0068.10.518
MA0069.10.0169
MA0070.10.903
MA0071.10.252
MA0072.10.842
MA0073.10.861
MA0074.10.477
MA0076.19.82301e-5
MA0077.10.612
MA0078.10.533
MA0079.20.49
MA0080.21.07145e-7
MA0081.10.0187
MA0083.10.0584
MA0084.10.96
MA0087.10.809
MA0088.10.696
MA0090.10.00204
MA0091.10.312
MA0092.10.132
MA0093.10.467
MA0099.26.90014e-9
MA0100.10.793
MA0101.17.08948e-6
MA0102.20.0536
MA0103.10.00565
MA0104.20.0373
MA0105.10.0392
MA0106.10.496
MA0107.11.09344e-6
MA0108.20.365
MA0111.10.689
MA0112.22.33419e-4
MA0113.10.17
MA0114.10.156
MA0115.10.492
MA0116.10.455
MA0117.10.189
MA0119.10.0949
MA0122.10.534
MA0124.10.19
MA0125.10.292
MA0131.10.211
MA0135.10.306
MA0136.14.79584e-12
MA0137.20.927
MA0138.20.0023
MA0139.10.83
MA0140.10.0481
MA0141.10.198
MA0142.10.247
MA0143.10.439
MA0144.10.438
MA0145.10.135
MA0146.10.414
MA0147.10.0727
MA0148.10.743
MA0149.10.829
MA0150.10.00379
MA0152.10.0705
MA0153.10.715
MA0154.10.433
MA0155.10.174
MA0156.19.80243e-12
MA0157.10.489
MA0159.10.268
MA0160.10.989
MA0162.10.0609
MA0163.10.246
MA0164.10.917
MA0258.10.139
MA0259.10.191



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11969

Novel motifP-value
10.785
100.533
1000.993
1010.378
1020.275
1030.38
1040.953
1050.00657
1060.0447
1070.0789
1080.148
1090.771
110.9
1100.738
1110.306
1120.345
1130.332
1140.409
1158.59646e-4
1160.121
1170.512
1180.429
1190.737
120.575
1200.645
1210.578
1220.087
1230.0226
1240.933
1250.746
1260.988
1270.627
1280.166
1290.915
130.795
1300.694
1310.979
1320.366
1330.789
1340.571
1350.72
1360.128
1370.834
1380.395
1390.706
140.186
1400.275
1410.57
1420.798
1430.547
1440.829
1450.773
1460.694
1470.157
1480.757
1490.00524
150.703
1500.432
1510.581
1520.0286
1530.64
1540.478
1550.114
1560.314
1570.923
1580.0121
1590.559
160.0194
1600.362
1610.98
1620.414
1630.257
1640.197
1650.607
1660.155
1670.475
1680.914
1690.013
170.592
180.441
190.00148
20.225
200.435
210.156
220.134
230.411
240.272
250.403
260.354
270.352
280.118
290.861
30.906
300.471
310.48
324.99107e-11
330.556
340.852
350.844
360.0456
370.107
380.414
390.208
40.524
400.236
410.676
420.122
430.364
440.165
450.756
460.618
470.926
480.952
490.728
50.985
500.656
510.81
520.394
530.0597
540.88
550.485
560.583
570.974
580.524
590.105
60.244
600.511
610.468
620.898
630.396
640.695
650.623
660.175
670.755
680.303
690.849
70.631
700.937
710.379
720.375
730.00876
740.314
750.441
760.491
770.00934
780.858
790.00884
80.375
800.121
810.589
820.389
830.555
840.177
850.00845
860.482
870.0545
880.961
890.131
90.63
900.894
910.996
920.254
930.844
940.665
950.418
960.902
970.67
980.877
990.0242



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11969


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002617 (adipocyte of breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000156 (human adipocyte of breast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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