FF:11332-117E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004800 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004800 | ||
|accession_numbers=CAGE;DRX008423;DRR009295;DRZ000720;DRZ002105;DRZ012070;DRZ013455 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037200;DRR041566;DRZ007208 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000277 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11332-117E9 | |id=FF:11332-117E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000277 | ||
|is_obsolete= | |||
|library_id=CNhs11973 | |||
|library_id_phase_based=2:CNhs11973 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11332 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.CGTACG.11332 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11332 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.CGTACG.11332 | |||
|name=Prostate Stromal Cells, donor2 | |name=Prostate Stromal Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11973,LSID836,release011,COMPLETED | |profile_hcage=CNhs11973,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0289682840632716,0,-0.0371979175054485,0.042250829432351,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324232733739394,0,0,0,0,0,0.292399416964729,0,0,-0.0603056172646049,0,0,0,0,0,0,0,0,0,0,0.0726509725142573,0,0.161660011347924,0.0250138618533385,0,0,0,0,0,0,0,0.0121104651442943,0,0,0,0.0726509725142573,0,0,0,0.0378800605677127,0,0,0.0919426869365608,0,0,0,0,0,0,0,0,0.134872421810318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0114210121944097,0,0,0,-0.0584468268118252,0.0503228280817078,0,0.134872421810318,0,0.189286314149658,-0.0980353512377064,0.12515630010412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.02244409642786,0.237635380700642,0,0,0.0726509725142573,0.301239314782232,0,0,0.0144484727809198,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.189286314149658,0,0,0,0,0,0,0.134872421810318,0,0,-0.112306453475247,0,-0.0526763674757582,-0.143515142523472,0.0363254862571286,0,0.0513989373420228,0,0,0,0,0.0726509725142573,0,0,0,0,0.61635142983925,0,0.0222384209249424,0,0.0726509725142573,0,0,0.0417839332340385,0.0514400928888229,0,0.218355329539292,0.0665281607329496,0,0,0,0,0.188571488187084,0,0.0139929380165772,-0.01006919580916,-0.221611588102807,0.229944373813215,-0.04680465889238,0,0,0.0363254862571286,0.012047875253307,0.285239838251706,0,0,-0.054343640846715,-0.181349618560659,0,0,1.0467570056693,0,0.0355350126088471,0.058027300448827,0,0.305035624516294,0,0,0,0,0,0,0,0,0,0,0,0.157288181329307,-0.045851593205385,0.00591550541955015,0,0,0.0726509725142573,-0.146362427967268,0,0.0103068275379265,0.703189351193853,-0.0695990098232747,-0.111593687270739,-0.152133135200509,0,0.054522596777317,0.0884029989169584,-0.307527054549439,-0.0104178314917125,0.209510474416092,-0.11733074703559,0,-0.029199957171396,0.0241437219290053,0,0.0309822227197043,0.00193043113970409,-0.363753031042117,-0.192975873951511,0,0,0.0726509725142573,0.091651523511483,0,0,0.19328488973709,0.0398606540936386,-0.041949450764353,-0.0814009358783205,0.00298538369328416,-0.167073562754119,0.315983739653231,-0.0670791396638087,0.0074829848708283,0.362664533190827,0,0,-0.0131002143445016,0.0773891042939242,0.0245042439356946,0.0675734310351848,0,-0.349105040000663,0.0665281607329496,0,0.0459622534342755,0.036713529334234,0,0,-0.0756549747142032,0,0,0,0,0,-0.083247323828938,0.0106476724676047,0.0047798191450972,0,-0.126412632075727,0.0220896332977869,0.0560841439889641,0,-0.19463589337954,-0.0672983398004877,0,-0.011496801122652,0,-0.0533302038743584,-0.0132622647342494,-0.0537981380541616,0.0279946836491584,-0.0584468268118252,-0.0154638578102815,-0.158240836252555,0.0454481619172955,0.294116809895444,-0.0287136420183814,2.13570988828303,0,0.151200908591646,-0.289140818388738,-0.0189270457467892,0.061002760031047,0,-0.102473428649458,0,-0.220401983114568,0,-0.213277520867211,0.0718784655988427,-0.366638402066429,0.0472256860899138,0,-0.0593628967144519,0.231763506641672,0,-0.0334329789543149,0.014000235823259,0,0.271042767941611,-0.105135212902908,-0.211650427864589,-0.00802081334723725,0,0.0324034683032124,0,0,0.0355662685391194,0.242079706323433,0,-0.0474407509598936,0.0741966900004677,-0.0323480143225113,-0.0433201009206767,0.0726509725142573,0,-0.645700337992725,0.0459592114803879,0,-0.324791060344446,0,0.0114210121944097,-0.180675368972498,0.000570024296011715,-0.108622809454255,0,0,0.179384557822055,0,0.249445819751786,0,0,0.358453625741844,0,0,0.0363254862571286,0.134872421810318,0,0.0726509725142573,0,0,0,0.00830718088862305,0,0,-0.197622939746082,0.0355239830163381,0,0.0998790481875889,0,0.0726509725142573,0,0,0,0,0,0.42140985127625,0.543303967968459,0.0628652000025879,0.380104840480788,0,0,0,0,0.104951820433541,-0.013950247945066,0.0726509725142573,0.188812516489384,0,0,0,0,-0.0861409897892114,0,0,0,0.0363254862571286,0.179904923646978,0.0293209352881068,0,0,0,0.250312600208241,0,0,0.0726509725142573,0,-0.0392599555614097,0,0,0.5176142024582,0,0.0681278853555343,-0.0815818795468414,0,0.106471637972495,0.347856052156838,0.133914902391146,0,0.134872421810318,0.310520895082896,0,0.0191886859614913,-0.108279503684466,-0.065974026537394,0,0.0363254862571286,0,0,0,0,0,0,0.10636071058726,0,0,0,0,0,0,0,0,0,0,0.0726509725142573,-0.0432472296948128,-0.0195730841442531,0.219502645106506,0,0,0,0,0,0,0.0433301878262558,0.190385036065328,0,0,0,0,0,0.134872421810318,0,0,0.078713875834529,0,0,0,0,0,0.0378800605677127,0,0,0,0,0.084501658864702,0,0,-0.039726751492872,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0115533357748701,0.079308361524314,0,0,0,0,0,0,0,-0.0371979175054485,0,0,0,0,0.0209880481013406,0,0,0,0.132838995911486,0,0.0289682840632716,0,0,0,0,0,0,0.0363254862571286,0,0,0,0,0,0,0,0,0,0,0.067436210905159,0,0,0,0.213370075629106,0,0.0726509725142573,-0.0286114461879121,0,0,0.139607295762866,0,0,0,0,0,0,0.063302733046302,0.127223011914953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237635380700642,0,0,0,0,0,0,0.00146744245204029,0,0,0,0,0,0,0,0.292399416964729,0,0,-0.0557073235433975,0,0,0,0,0,0,0.147430678585684,0.288901777120593,-0.0109884438561545,0,0,0,0.064432117867866,0.0726509725142573,0,0,0,0.0680950343914165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324232733739394,0,0,0,0,0,0,0,0,0,0,0.067436210905159,0,0.094643157074829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109267845881019,0,0,0,-0.0782138078467259,0,0,0,0,0,0,0.189286314149658,0,0.0726509725142573,0,0,0,0,0,0,0,0,0,0,0,0.0726509725142573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0976933892068141,0,0,0,0,0,0,0,0,0.0726509725142573,0,0,0,0,0.189413305461588,0,0.0504957895802907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.100114553474817,0,0,0,0,0.0250138618533385,0,0,0,0,0,0,0.390357313232786,0,0,0,0.0726509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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 54: | Line 80: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.17E+11 | ||
|rna_weight_ug=63.8 | |rna_weight_ug=63.8 | ||
|rnaseq_library_id=SRhi10012.CGTACG | |||
|sample_age=24 | |sample_age=24 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-2508 | |sample_cell_catalog=CC-2508 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.18613130193498e-232!GO:0005737;cytoplasm;1.34677475081514e-190!GO:0043226;organelle;6.24601874010375e-186!GO:0043229;intracellular organelle;1.34193912346579e-185!GO:0043231;intracellular membrane-bound organelle;2.89134728132122e-184!GO:0043227;membrane-bound organelle;6.0460187562519e-184!GO:0044422;organelle part;5.29223388408103e-149!GO:0044446;intracellular organelle part;1.59224725822266e-147!GO:0044444;cytoplasmic part;1.20792191854563e-138!GO:0032991;macromolecular complex;3.02233631125471e-100!GO:0030529;ribonucleoprotein complex;8.04017627461465e-88!GO:0044238;primary metabolic process;7.7559546774281e-83!GO:0044237;cellular metabolic process;1.91397645664726e-82!GO:0005515;protein binding;4.14128069009327e-76!GO:0043170;macromolecule metabolic process;4.14128069009327e-76!GO:0043233;organelle lumen;7.24755654863188e-72!GO:0031974;membrane-enclosed lumen;7.24755654863188e-72!GO:0044428;nuclear part;1.05049090683878e-70!GO:0005634;nucleus;7.3108619407832e-69!GO:0005739;mitochondrion;2.0482699885381e-67!GO:0003723;RNA binding;1.33838853249484e-66!GO:0005840;ribosome;9.70465447479464e-55!GO:0019538;protein metabolic process;1.99183908255139e-51!GO:0043234;protein complex;2.46622993478214e-50!GO:0006412;translation;3.09222601783518e-50!GO:0031090;organelle membrane;7.29818772752643e-50!GO:0016043;cellular component organization and biogenesis;1.83088445401912e-48!GO:0003735;structural constituent of ribosome;6.09016307419497e-48!GO:0006396;RNA processing;1.01703093824099e-46!GO:0044260;cellular macromolecule metabolic process;2.96983151265608e-45!GO:0044429;mitochondrial part;6.17556967199217e-45!GO:0044267;cellular protein metabolic process;1.03455684140082e-44!GO:0015031;protein transport;1.35482823741682e-42!GO:0033279;ribosomal subunit;1.57292528658016e-42!GO:0009058;biosynthetic process;2.26019655312969e-41!GO:0031967;organelle envelope;2.33189461537198e-41!GO:0031981;nuclear lumen;3.60880742486558e-41!GO:0031975;envelope;5.7404260687399e-41!GO:0033036;macromolecule localization;8.06862652795665e-41!GO:0044249;cellular biosynthetic process;2.0062468054375e-40!GO:0005829;cytosol;2.49932780559525e-40!GO:0009059;macromolecule biosynthetic process;1.00949070609624e-38!GO:0043283;biopolymer metabolic process;1.27976651414584e-38!GO:0045184;establishment of protein localization;2.87041812354018e-38!GO:0008104;protein localization;9.07376906183504e-38!GO:0043228;non-membrane-bound organelle;5.92854381069284e-37!GO:0043232;intracellular non-membrane-bound organelle;5.92854381069284e-37!GO:0016071;mRNA metabolic process;1.47072575434155e-35!GO:0046907;intracellular transport;2.215670528539e-34!GO:0010467;gene expression;2.31344565871046e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.14301397337269e-34!GO:0065003;macromolecular complex assembly;1.61799761805068e-33!GO:0006996;organelle organization and biogenesis;1.61799761805068e-33!GO:0008380;RNA splicing;4.18467094254893e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.59187625845546e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.10600590980535e-31!GO:0006397;mRNA processing;9.47615790027742e-31!GO:0022607;cellular component assembly;5.23261815495767e-30!GO:0005740;mitochondrial envelope;7.59972041955924e-29!GO:0006886;intracellular protein transport;1.15376501534274e-28!GO:0031966;mitochondrial membrane;4.28370349679547e-27!GO:0007049;cell cycle;4.88045539844018e-27!GO:0019866;organelle inner membrane;1.30344888521696e-26!GO:0006259;DNA metabolic process;2.06988723638142e-26!GO:0005743;mitochondrial inner membrane;8.94959703964519e-25!GO:0005654;nucleoplasm;1.44443739549317e-24!GO:0005681;spliceosome;2.69052203831202e-24!GO:0044445;cytosolic part;1.17855498357899e-23!GO:0015934;large ribosomal subunit;4.54006281370988e-22!GO:0006119;oxidative phosphorylation;4.63712878483442e-22!GO:0005783;endoplasmic reticulum;5.40265428434745e-22!GO:0051649;establishment of cellular localization;6.92621472909741e-22!GO:0000166;nucleotide binding;7.21166601775742e-22!GO:0051641;cellular localization;1.05030524393063e-21!GO:0006457;protein folding;1.37592137497587e-21!GO:0015935;small ribosomal subunit;1.62499228967135e-21!GO:0012505;endomembrane system;2.18924543652395e-21!GO:0022402;cell cycle process;3.25675218201673e-21!GO:0016462;pyrophosphatase activity;1.25522378020183e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.50736167324634e-20!GO:0000278;mitotic cell cycle;2.26343584306795e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.3196557038691e-20!GO:0017111;nucleoside-triphosphatase activity;3.84048724845695e-20!GO:0044455;mitochondrial membrane part;5.48577069363816e-20!GO:0048770;pigment granule;6.74300851838973e-20!GO:0042470;melanosome;6.74300851838973e-20!GO:0044451;nucleoplasm part;9.77674602714439e-20!GO:0031980;mitochondrial lumen;3.62269893131547e-19!GO:0005759;mitochondrial matrix;3.62269893131547e-19!GO:0005730;nucleolus;7.0568332316085e-18!GO:0022618;protein-RNA complex assembly;7.92991110933227e-18!GO:0003676;nucleic acid binding;8.11147937939316e-18!GO:0044432;endoplasmic reticulum part;8.67975991093614e-18!GO:0005694;chromosome;5.57801251452618e-17!GO:0016874;ligase activity;6.18662530897728e-17!GO:0005746;mitochondrial respiratory chain;7.55632551300072e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.195069501873e-16!GO:0051186;cofactor metabolic process;1.33279078076744e-16!GO:0000087;M phase of mitotic cell cycle;1.69929669207512e-16!GO:0007067;mitosis;2.32316245274118e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.24944960362295e-16!GO:0044427;chromosomal part;4.95122501647039e-16!GO:0043285;biopolymer catabolic process;1.06176009480356e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.17196667398622e-15!GO:0008135;translation factor activity, nucleic acid binding;1.41388522887148e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.64169127647037e-15!GO:0005761;mitochondrial ribosome;1.73525562990384e-15!GO:0000313;organellar ribosome;1.73525562990384e-15!GO:0032553;ribonucleotide binding;2.3437220359267e-15!GO:0032555;purine ribonucleotide binding;2.3437220359267e-15!GO:0044265;cellular macromolecule catabolic process;3.33329123369885e-15!GO:0008134;transcription factor binding;3.42710935921119e-15!GO:0006512;ubiquitin cycle;3.83138438642757e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.84684062481519e-15!GO:0005794;Golgi apparatus;5.03150518337663e-15!GO:0017076;purine nucleotide binding;5.10611318103901e-15!GO:0019941;modification-dependent protein catabolic process;6.26747270908693e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.26747270908693e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.19867723478465e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.64265806244387e-15!GO:0003954;NADH dehydrogenase activity;9.64265806244387e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.64265806244387e-15!GO:0044257;cellular protein catabolic process;9.78984064922742e-15!GO:0022403;cell cycle phase;9.83684630657767e-15!GO:0051082;unfolded protein binding;1.59670889684069e-14!GO:0006974;response to DNA damage stimulus;1.93511682858967e-14!GO:0006605;protein targeting;2.71773351882633e-14!GO:0009057;macromolecule catabolic process;3.50209311017143e-14!GO:0048193;Golgi vesicle transport;3.52999228962234e-14!GO:0042254;ribosome biogenesis and assembly;3.76431032280793e-14!GO:0030163;protein catabolic process;3.85309336912198e-14!GO:0051301;cell division;1.15962094979943e-13!GO:0044248;cellular catabolic process;1.79506502711991e-13!GO:0005635;nuclear envelope;2.57342389745215e-13!GO:0006732;coenzyme metabolic process;5.32138837553792e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.95363739839699e-13!GO:0042773;ATP synthesis coupled electron transport;5.95363739839699e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;6.98712167418038e-13!GO:0000375;RNA splicing, via transesterification reactions;6.98712167418038e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.98712167418038e-13!GO:0016070;RNA metabolic process;7.06727994065209e-13!GO:0000279;M phase;7.54288370725239e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.59890899097629e-13!GO:0045271;respiratory chain complex I;8.59890899097629e-13!GO:0005747;mitochondrial respiratory chain complex I;8.59890899097629e-13!GO:0003743;translation initiation factor activity;8.74872412893687e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.31881661849771e-12!GO:0005524;ATP binding;1.50472760228035e-12!GO:0032559;adenyl ribonucleotide binding;2.11387686009195e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.39060588043728e-12!GO:0009055;electron carrier activity;2.58733273112818e-12!GO:0051276;chromosome organization and biogenesis;2.87884822605757e-12!GO:0031965;nuclear membrane;3.10630617557234e-12!GO:0005793;ER-Golgi intermediate compartment;3.52637104410073e-12!GO:0051726;regulation of cell cycle;3.92308410529376e-12!GO:0000074;regulation of progression through cell cycle;5.00805807526948e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.4131468468475e-12!GO:0005789;endoplasmic reticulum membrane;5.61635899549051e-12!GO:0030554;adenyl nucleotide binding;6.4941751372593e-12!GO:0044453;nuclear membrane part;9.05354656747294e-12!GO:0006281;DNA repair;1.22274880579042e-11!GO:0006413;translational initiation;1.64660035231982e-11!GO:0012501;programmed cell death;2.33215271890562e-11!GO:0043412;biopolymer modification;3.91847832721347e-11!GO:0006915;apoptosis;4.02663795696711e-11!GO:0009259;ribonucleotide metabolic process;6.935018055617e-11!GO:0009719;response to endogenous stimulus;7.09100008830216e-11!GO:0016192;vesicle-mediated transport;8.51343997474691e-11!GO:0006260;DNA replication;1.14164351111363e-10!GO:0006163;purine nucleotide metabolic process;1.74030168171461e-10!GO:0016887;ATPase activity;2.14906883757683e-10!GO:0003712;transcription cofactor activity;2.76640038266616e-10!GO:0065004;protein-DNA complex assembly;2.79497570706686e-10!GO:0042623;ATPase activity, coupled;3.05467295135243e-10!GO:0006399;tRNA metabolic process;3.31124158451105e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;4.21502140845085e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.25005346731636e-10!GO:0009150;purine ribonucleotide metabolic process;4.37938473419677e-10!GO:0006464;protein modification process;4.65974224543169e-10!GO:0000785;chromatin;5.43147511636726e-10!GO:0008219;cell death;5.48909150794245e-10!GO:0016265;death;5.48909150794245e-10!GO:0006913;nucleocytoplasmic transport;8.46203397310509e-10!GO:0016604;nuclear body;8.73174938980786e-10!GO:0006164;purine nucleotide biosynthetic process;9.42024614405301e-10!GO:0009260;ribonucleotide biosynthetic process;9.53449116477166e-10!GO:0006446;regulation of translational initiation;1.00203111971686e-09!GO:0006323;DNA packaging;1.45205894373429e-09!GO:0048523;negative regulation of cellular process;1.59406337587939e-09!GO:0051169;nuclear transport;1.70517306001953e-09!GO:0006364;rRNA processing;2.01257344046494e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.32179323820241e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.36591754552274e-09!GO:0005643;nuclear pore;2.54311784591045e-09!GO:0008639;small protein conjugating enzyme activity;2.66596655499812e-09!GO:0065002;intracellular protein transport across a membrane;3.13337105263185e-09!GO:0009141;nucleoside triphosphate metabolic process;3.40606109705361e-09!GO:0006461;protein complex assembly;3.88463654321882e-09!GO:0006333;chromatin assembly or disassembly;4.10937410169879e-09!GO:0016072;rRNA metabolic process;4.52062610331782e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.86324440932559e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.86324440932559e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.05840054502845e-09!GO:0004842;ubiquitin-protein ligase activity;5.54681645644411e-09!GO:0008565;protein transporter activity;5.88628645453258e-09!GO:0019787;small conjugating protein ligase activity;5.88628645453258e-09!GO:0043687;post-translational protein modification;6.45080130389765e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.93433280473985e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.19426524000912e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.8559690399556e-09!GO:0005788;endoplasmic reticulum lumen;8.03662764917502e-09!GO:0015630;microtubule cytoskeleton;1.0352870151024e-08!GO:0006334;nucleosome assembly;1.085062120985e-08!GO:0051188;cofactor biosynthetic process;1.15921230695459e-08!GO:0009060;aerobic respiration;1.17593427939178e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.65936973563549e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.65936973563549e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.65936973563549e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.75959870329512e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.75959870329512e-08!GO:0015986;ATP synthesis coupled proton transport;1.83336707793289e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.83336707793289e-08!GO:0016491;oxidoreductase activity;2.59406607780762e-08!GO:0046034;ATP metabolic process;3.41446222618617e-08!GO:0009056;catabolic process;3.41446222618617e-08!GO:0043038;amino acid activation;3.54645913170194e-08!GO:0006418;tRNA aminoacylation for protein translation;3.54645913170194e-08!GO:0043039;tRNA aminoacylation;3.54645913170194e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.57868306408748e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.64331039300997e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.64331039300997e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.16880963494172e-08!GO:0016881;acid-amino acid ligase activity;4.31967051196473e-08!GO:0045333;cellular respiration;4.3466172579178e-08!GO:0004386;helicase activity;4.73981728837989e-08!GO:0046930;pore complex;4.90978824204089e-08!GO:0019829;cation-transporting ATPase activity;5.13508671637363e-08!GO:0048519;negative regulation of biological process;6.37519998096274e-08!GO:0017038;protein import;6.7838959831142e-08!GO:0031497;chromatin assembly;7.12186221162637e-08!GO:0006366;transcription from RNA polymerase II promoter;9.02726119373992e-08!GO:0008026;ATP-dependent helicase activity;9.16350910628209e-08!GO:0016607;nuclear speck;1.1329197469378e-07!GO:0043067;regulation of programmed cell death;1.35181156596822e-07!GO:0009117;nucleotide metabolic process;1.35516963490546e-07!GO:0006403;RNA localization;1.43452751204078e-07!GO:0042981;regulation of apoptosis;1.44534754531305e-07!GO:0050657;nucleic acid transport;1.48432545746355e-07!GO:0051236;establishment of RNA localization;1.48432545746355e-07!GO:0050658;RNA transport;1.48432545746355e-07!GO:0030120;vesicle coat;1.54082135374006e-07!GO:0030662;coated vesicle membrane;1.54082135374006e-07!GO:0003924;GTPase activity;1.56015871183541e-07!GO:0007005;mitochondrion organization and biogenesis;1.69773884158387e-07!GO:0003697;single-stranded DNA binding;2.10799100644848e-07!GO:0006754;ATP biosynthetic process;2.20068898959723e-07!GO:0006753;nucleoside phosphate metabolic process;2.20068898959723e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.27788883233235e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.76612881542012e-07!GO:0051246;regulation of protein metabolic process;2.77705102255221e-07!GO:0006099;tricarboxylic acid cycle;6.35053204509205e-07!GO:0046356;acetyl-CoA catabolic process;6.35053204509205e-07!GO:0051187;cofactor catabolic process;6.94906156883509e-07!GO:0048475;coated membrane;6.94906156883509e-07!GO:0030117;membrane coat;6.94906156883509e-07!GO:0050794;regulation of cellular process;6.98597990659077e-07!GO:0009108;coenzyme biosynthetic process;7.30072072439194e-07!GO:0044431;Golgi apparatus part;8.3269899531616e-07!GO:0000775;chromosome, pericentric region;9.0214932272277e-07!GO:0005667;transcription factor complex;1.1955859788638e-06!GO:0005819;spindle;1.27963431882278e-06!GO:0009109;coenzyme catabolic process;1.29506658378717e-06!GO:0043566;structure-specific DNA binding;1.40116819540558e-06!GO:0045786;negative regulation of progression through cell cycle;1.69958981559023e-06!GO:0043069;negative regulation of programmed cell death;1.80627890483194e-06!GO:0045259;proton-transporting ATP synthase complex;2.04765994561462e-06!GO:0006084;acetyl-CoA metabolic process;2.05403973577491e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.11215746726692e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.14314739711766e-06!GO:0005768;endosome;2.14314739711766e-06!GO:0031988;membrane-bound vesicle;2.18833752553383e-06!GO:0045454;cell redox homeostasis;2.46337251712734e-06!GO:0032446;protein modification by small protein conjugation;2.46608165655025e-06!GO:0004298;threonine endopeptidase activity;2.55018238262016e-06!GO:0016787;hydrolase activity;2.59677856463644e-06!GO:0016853;isomerase activity;2.63521730163293e-06!GO:0043066;negative regulation of apoptosis;3.15532535796622e-06!GO:0016567;protein ubiquitination;3.20312983563647e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.45556625113724e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.44329857613943e-06!GO:0000245;spliceosome assembly;4.49631235086404e-06!GO:0051028;mRNA transport;4.91141226077766e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.43566777682056e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.44840071113671e-06!GO:0006752;group transfer coenzyme metabolic process;5.44840071113671e-06!GO:0007051;spindle organization and biogenesis;5.57042824739682e-06!GO:0006916;anti-apoptosis;5.98456072797214e-06!GO:0005813;centrosome;6.08692941724997e-06!GO:0005762;mitochondrial large ribosomal subunit;6.34915469038966e-06!GO:0000315;organellar large ribosomal subunit;6.34915469038966e-06!GO:0006613;cotranslational protein targeting to membrane;7.83972374482333e-06!GO:0005815;microtubule organizing center;1.0468898710849e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.06674079804318e-05!GO:0016779;nucleotidyltransferase activity;1.33583269013609e-05!GO:0006091;generation of precursor metabolites and energy;1.37032205940241e-05!GO:0003714;transcription corepressor activity;1.47603584938075e-05!GO:0051789;response to protein stimulus;1.6029544913844e-05!GO:0006986;response to unfolded protein;1.6029544913844e-05!GO:0000151;ubiquitin ligase complex;1.79057961572835e-05!GO:0005773;vacuole;1.80612630409051e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.85586846055976e-05!GO:0051170;nuclear import;1.99479293560938e-05!GO:0005770;late endosome;2.00296665513956e-05!GO:0031982;vesicle;2.05104898729793e-05!GO:0016859;cis-trans isomerase activity;2.05104898729793e-05!GO:0005798;Golgi-associated vesicle;2.05943728185181e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.19979545648401e-05!GO:0005525;GTP binding;2.20249346354798e-05!GO:0043623;cellular protein complex assembly;2.24062569771917e-05!GO:0031252;leading edge;2.25116512616984e-05!GO:0008654;phospholipid biosynthetic process;2.33289938041021e-05!GO:0031410;cytoplasmic vesicle;2.36978413139851e-05!GO:0051329;interphase of mitotic cell cycle;2.68296085645488e-05!GO:0008361;regulation of cell size;2.70226706522913e-05!GO:0016049;cell growth;3.28222609661523e-05!GO:0030867;rough endoplasmic reticulum membrane;3.34426271045979e-05!GO:0006793;phosphorus metabolic process;3.47468731719482e-05!GO:0006796;phosphate metabolic process;3.47468731719482e-05!GO:0003713;transcription coactivator activity;3.7771791777251e-05!GO:0016310;phosphorylation;3.85804676347403e-05!GO:0006606;protein import into nucleus;3.96601937087816e-05!GO:0000139;Golgi membrane;4.03308090394744e-05!GO:0003724;RNA helicase activity;4.46341332128209e-05!GO:0003899;DNA-directed RNA polymerase activity;4.47373565208891e-05!GO:0000786;nucleosome;4.65815041610157e-05!GO:0019843;rRNA binding;4.86505556259193e-05!GO:0050789;regulation of biological process;5.66242862674067e-05!GO:0031324;negative regulation of cellular metabolic process;5.92875233307141e-05!GO:0016568;chromatin modification;6.38799532768756e-05!GO:0016563;transcription activator activity;7.10903089936334e-05!GO:0001558;regulation of cell growth;7.34374594008923e-05!GO:0006261;DNA-dependent DNA replication;7.53476511670847e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.79694643810659e-05!GO:0000314;organellar small ribosomal subunit;9.11987350806072e-05!GO:0005763;mitochondrial small ribosomal subunit;9.11987350806072e-05!GO:0005048;signal sequence binding;9.22498953970291e-05!GO:0000075;cell cycle checkpoint;9.51186099360533e-05!GO:0016740;transferase activity;9.6177915442689e-05!GO:0000323;lytic vacuole;0.00010304754370126!GO:0005764;lysosome;0.00010304754370126!GO:0051325;interphase;0.000126355645042314!GO:0043021;ribonucleoprotein binding;0.000129882877369991!GO:0032561;guanyl ribonucleotide binding;0.000144122118568035!GO:0019001;guanyl nucleotide binding;0.000144122118568035!GO:0019867;outer membrane;0.000149832923958717!GO:0031968;organelle outer membrane;0.000149942853269121!GO:0007010;cytoskeleton organization and biogenesis;0.000152899075557469!GO:0016564;transcription repressor activity;0.000154875886673246!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000166105911848563!GO:0033116;ER-Golgi intermediate compartment membrane;0.000169690212826381!GO:0006612;protein targeting to membrane;0.000173763514085342!GO:0006414;translational elongation;0.000209716332187744!GO:0005769;early endosome;0.000221997883451305!GO:0005791;rough endoplasmic reticulum;0.000224097490506728!GO:0048522;positive regulation of cellular process;0.00026197296319863!GO:0044440;endosomal part;0.000270528666272878!GO:0010008;endosome membrane;0.000270528666272878!GO:0005657;replication fork;0.0002827686853339!GO:0006626;protein targeting to mitochondrion;0.000285588928566501!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000301982549018519!GO:0030663;COPI coated vesicle membrane;0.000302999743963291!GO:0030126;COPI vesicle coat;0.000302999743963291!GO:0043284;biopolymer biosynthetic process;0.000334284882691604!GO:0008250;oligosaccharyl transferase complex;0.00034333260481065!GO:0004576;oligosaccharyl transferase activity;0.000376394210524921!GO:0005885;Arp2/3 protein complex;0.000387568035351938!GO:0051427;hormone receptor binding;0.00041945003570251!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00049283898504466!GO:0009892;negative regulation of metabolic process;0.000501951307223807!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00052037561712929!GO:0043681;protein import into mitochondrion;0.00055112523098997!GO:0000776;kinetochore;0.000566040248303219!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000573406259356173!GO:0005905;coated pit;0.000580602326804244!GO:0009165;nucleotide biosynthetic process;0.000641573082353438!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000678713044969059!GO:0007088;regulation of mitosis;0.000681103238586434!GO:0030133;transport vesicle;0.000690827262323969!GO:0018196;peptidyl-asparagine modification;0.000695180674409803!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000695180674409803!GO:0051168;nuclear export;0.000735008468109356!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000765828896496798!GO:0005741;mitochondrial outer membrane;0.000787256765162127!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000834887895993256!GO:0035257;nuclear hormone receptor binding;0.000840855234955193!GO:0031072;heat shock protein binding;0.000913414626566102!GO:0008186;RNA-dependent ATPase activity;0.000915178060069354!GO:0051052;regulation of DNA metabolic process;0.000924468953847163!GO:0006839;mitochondrial transport;0.000941868847623513!GO:0051920;peroxiredoxin activity;0.000969912010456239!GO:0005874;microtubule;0.000976555061330876!GO:0030137;COPI-coated vesicle;0.00106002962633226!GO:0008094;DNA-dependent ATPase activity;0.00110064312790528!GO:0006383;transcription from RNA polymerase III promoter;0.00123305287311721!GO:0046474;glycerophospholipid biosynthetic process;0.00123305287311721!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00130918280089939!GO:0000082;G1/S transition of mitotic cell cycle;0.00131731668971952!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00134993875659085!GO:0007243;protein kinase cascade;0.00135247825021784!GO:0008033;tRNA processing;0.0013613376506366!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00141154374219866!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00141976126670763!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00141976126670763!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00141976126670763!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00143566229015309!GO:0065009;regulation of a molecular function;0.00145629730171609!GO:0000059;protein import into nucleus, docking;0.00148077987091859!GO:0044452;nucleolar part;0.00148712545004734!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00151843326533279!GO:0015399;primary active transmembrane transporter activity;0.00151843326533279!GO:0003729;mRNA binding;0.00164081082985397!GO:0019899;enzyme binding;0.00164523758026635!GO:0007050;cell cycle arrest;0.00167971621084238!GO:0051252;regulation of RNA metabolic process;0.00169897085823845!GO:0006891;intra-Golgi vesicle-mediated transport;0.00182419196282767!GO:0048500;signal recognition particle;0.0019112426326556!GO:0003684;damaged DNA binding;0.00193846119588282!GO:0016363;nuclear matrix;0.00215565031567288!GO:0008632;apoptotic program;0.00219665475035127!GO:0006302;double-strand break repair;0.00236706802069235!GO:0004004;ATP-dependent RNA helicase activity;0.00236808168794271!GO:0030176;integral to endoplasmic reticulum membrane;0.00255203321944161!GO:0030036;actin cytoskeleton organization and biogenesis;0.00262513637921243!GO:0007093;mitotic cell cycle checkpoint;0.00262698799406658!GO:0046483;heterocycle metabolic process;0.00263504461374789!GO:0043488;regulation of mRNA stability;0.00269817658764242!GO:0043487;regulation of RNA stability;0.00269817658764242!GO:0007006;mitochondrial membrane organization and biogenesis;0.00269817658764242!GO:0048487;beta-tubulin binding;0.00277428642498614!GO:0006402;mRNA catabolic process;0.00285610051826194!GO:0030880;RNA polymerase complex;0.00299627729339005!GO:0016481;negative regulation of transcription;0.00311003858117426!GO:0006950;response to stress;0.00322456763588751!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00327042505716232!GO:0030134;ER to Golgi transport vesicle;0.00329567560787453!GO:0003690;double-stranded DNA binding;0.00335791799003882!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00339060087612086!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00339060087612086!GO:0005684;U2-dependent spliceosome;0.0035080223780426!GO:0007052;mitotic spindle organization and biogenesis;0.00366954156838064!GO:0006979;response to oxidative stress;0.00386184864325014!GO:0004177;aminopeptidase activity;0.00391854239536807!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00391854239536807!GO:0015002;heme-copper terminal oxidase activity;0.00391854239536807!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00391854239536807!GO:0004129;cytochrome-c oxidase activity;0.00391854239536807!GO:0008312;7S RNA binding;0.00394978100405424!GO:0030132;clathrin coat of coated pit;0.00400782729132315!GO:0006595;polyamine metabolic process;0.00403884648063477!GO:0030027;lamellipodium;0.00408665668335295!GO:0040008;regulation of growth;0.00414130412414385!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00414587580634427!GO:0044262;cellular carbohydrate metabolic process;0.0042269699350938!GO:0008180;signalosome;0.00450034312850733!GO:0022890;inorganic cation transmembrane transporter activity;0.00463858015448338!GO:0015631;tubulin binding;0.00465249852089695!GO:0008139;nuclear localization sequence binding;0.0047177137809473!GO:0006740;NADPH regeneration;0.00479020029173451!GO:0006098;pentose-phosphate shunt;0.00479020029173451!GO:0000049;tRNA binding;0.0049391991841901!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0049391991841901!GO:0045047;protein targeting to ER;0.0049391991841901!GO:0009112;nucleobase metabolic process;0.00501279169685563!GO:0006401;RNA catabolic process;0.00523172156029147!GO:0030127;COPII vesicle coat;0.00538935412584687!GO:0012507;ER to Golgi transport vesicle membrane;0.00538935412584687!GO:0015992;proton transport;0.00543748158289132!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00559375207470891!GO:0051287;NAD binding;0.00569734928988804!GO:0051087;chaperone binding;0.0057413889887168!GO:0007059;chromosome segregation;0.00575757459399367!GO:0019752;carboxylic acid metabolic process;0.00580945288902063!GO:0003678;DNA helicase activity;0.00580945288902063!GO:0006984;ER-nuclear signaling pathway;0.00602359787201069!GO:0006818;hydrogen transport;0.00607901580471559!GO:0048518;positive regulation of biological process;0.00607901580471559!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00607901580471559!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00607901580471559!GO:0006275;regulation of DNA replication;0.00612126424594293!GO:0046489;phosphoinositide biosynthetic process;0.006154782776563!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00617518211706944!GO:0000428;DNA-directed RNA polymerase complex;0.00617518211706944!GO:0006082;organic acid metabolic process;0.00617898750603949!GO:0042802;identical protein binding;0.00646660279880233!GO:0017166;vinculin binding;0.00656024734689844!GO:0003682;chromatin binding;0.00667844301906528!GO:0007040;lysosome organization and biogenesis;0.00719532387199737!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00720286518999397!GO:0000096;sulfur amino acid metabolic process;0.00741445651056247!GO:0045792;negative regulation of cell size;0.00781407809897996!GO:0030658;transport vesicle membrane;0.00792909565398905!GO:0065007;biological regulation;0.00813075154742779!GO:0006520;amino acid metabolic process;0.00818415989632418!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0087605856096263!GO:0030308;negative regulation of cell growth;0.00887127690864455!GO:0007264;small GTPase mediated signal transduction;0.00892880056003846!GO:0051540;metal cluster binding;0.00902081250332258!GO:0051536;iron-sulfur cluster binding;0.00902081250332258!GO:0030659;cytoplasmic vesicle membrane;0.0090961462175447!GO:0048471;perinuclear region of cytoplasm;0.0090961462175447!GO:0001726;ruffle;0.0090961462175447!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0092232084534004!GO:0008243;plasminogen activator activity;0.00932951499553061!GO:0045045;secretory pathway;0.00941238097759426!GO:0005637;nuclear inner membrane;0.0094943463228115!GO:0043492;ATPase activity, coupled to movement of substances;0.0094943463228115!GO:0016126;sterol biosynthetic process;0.00956132376905245!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00959783748623473!GO:0005869;dynactin complex;0.00972380098242796!GO:0031124;mRNA 3'-end processing;0.0100058476222109!GO:0006352;transcription initiation;0.010099232467999!GO:0030029;actin filament-based process;0.0101729484526216!GO:0016741;transferase activity, transferring one-carbon groups;0.010490395374802!GO:0008168;methyltransferase activity;0.010490395374802!GO:0008047;enzyme activator activity;0.0105132096104441!GO:0005862;muscle thin filament tropomyosin;0.0105409764283191!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0106277483810878!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0112083380705371!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0113141179921559!GO:0046467;membrane lipid biosynthetic process;0.0114075465400754!GO:0016251;general RNA polymerase II transcription factor activity;0.0114576532831486!GO:0007017;microtubule-based process;0.0115335397884962!GO:0005581;collagen;0.0115599529779757!GO:0009116;nucleoside metabolic process;0.0116730125812584!GO:0016197;endosome transport;0.0116947740892164!GO:0004674;protein serine/threonine kinase activity;0.0117839045732969!GO:0043022;ribosome binding;0.0117839045732969!GO:0006778;porphyrin metabolic process;0.0120416592165322!GO:0033013;tetrapyrrole metabolic process;0.0120416592165322!GO:0048468;cell development;0.012246469061568!GO:0030118;clathrin coat;0.0123795210482945!GO:0003746;translation elongation factor activity;0.0124521498061997!GO:0033673;negative regulation of kinase activity;0.0124521498061997!GO:0006469;negative regulation of protein kinase activity;0.0124521498061997!GO:0008092;cytoskeletal protein binding;0.0128279294783861!GO:0006497;protein amino acid lipidation;0.0130511674603856!GO:0019222;regulation of metabolic process;0.013063937548229!GO:0045941;positive regulation of transcription;0.0135780635062225!GO:0005832;chaperonin-containing T-complex;0.0140076894962517!GO:0006739;NADP metabolic process;0.0140927015230081!GO:0051348;negative regulation of transferase activity;0.0141023204796615!GO:0035258;steroid hormone receptor binding;0.0141808060452223!GO:0005876;spindle microtubule;0.0143661304198254!GO:0006650;glycerophospholipid metabolic process;0.0144387143933549!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0146099735710776!GO:0019798;procollagen-proline dioxygenase activity;0.0147636486162276!GO:0000339;RNA cap binding;0.0148461859721048!GO:0007033;vacuole organization and biogenesis;0.015010144402185!GO:0031543;peptidyl-proline dioxygenase activity;0.0153516819228432!GO:0051539;4 iron, 4 sulfur cluster binding;0.0154618157061591!GO:0030145;manganese ion binding;0.0155440617274806!GO:0030503;regulation of cell redox homeostasis;0.0156702588629312!GO:0030660;Golgi-associated vesicle membrane;0.0157013081306699!GO:0051128;regulation of cellular component organization and biogenesis;0.0157053488834852!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0158267454650293!GO:0043065;positive regulation of apoptosis;0.0162203015924071!GO:0031902;late endosome membrane;0.0162203015924071!GO:0032508;DNA duplex unwinding;0.0167712924325261!GO:0032392;DNA geometric change;0.0167712924325261!GO:0006611;protein export from nucleus;0.0168029161556316!GO:0016272;prefoldin complex;0.0172830679687948!GO:0005669;transcription factor TFIID complex;0.0174578635142138!GO:0000792;heterochromatin;0.0174578635142138!GO:0050662;coenzyme binding;0.0175353306991036!GO:0032984;macromolecular complex disassembly;0.0183129155243669!GO:0030521;androgen receptor signaling pathway;0.0185274950255771!GO:0000287;magnesium ion binding;0.0188975735661801!GO:0009967;positive regulation of signal transduction;0.0189232040613652!GO:0050790;regulation of catalytic activity;0.0189350630567954!GO:0006220;pyrimidine nucleotide metabolic process;0.0190086218191341!GO:0008652;amino acid biosynthetic process;0.0191959750818941!GO:0046426;negative regulation of JAK-STAT cascade;0.0192729455482866!GO:0043068;positive regulation of programmed cell death;0.0192729455482866!GO:0004527;exonuclease activity;0.0196340005295669!GO:0003711;transcription elongation regulator activity;0.0201905369436242!GO:0043624;cellular protein complex disassembly;0.0206595960859335!GO:0030032;lamellipodium biogenesis;0.0206595960859335!GO:0030833;regulation of actin filament polymerization;0.0208066525927837!GO:0044433;cytoplasmic vesicle part;0.020830451627801!GO:0004003;ATP-dependent DNA helicase activity;0.0211713618867548!GO:0031529;ruffle organization and biogenesis;0.0211959625517916!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0213658772841784!GO:0042158;lipoprotein biosynthetic process;0.0221370110577506!GO:0016860;intramolecular oxidoreductase activity;0.0223422108406708!GO:0019206;nucleoside kinase activity;0.0223609676588554!GO:0000922;spindle pole;0.0224819004988333!GO:0050811;GABA receptor binding;0.0228199157907984!GO:0016584;nucleosome positioning;0.0228296006473368!GO:0048144;fibroblast proliferation;0.0231668828932601!GO:0048145;regulation of fibroblast proliferation;0.0231668828932601!GO:0030041;actin filament polymerization;0.0233076650551134!GO:0045936;negative regulation of phosphate metabolic process;0.0233743550600408!GO:0030433;ER-associated protein catabolic process;0.0234987252407684!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0234987252407684!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0236871998263459!GO:0006310;DNA recombination;0.023962324273769!GO:0031418;L-ascorbic acid binding;0.023962324273769!GO:0006405;RNA export from nucleus;0.0239950890759706!GO:0042168;heme metabolic process;0.0240690627706255!GO:0008610;lipid biosynthetic process;0.0240886117398402!GO:0006144;purine base metabolic process;0.0241844866560677!GO:0006509;membrane protein ectodomain proteolysis;0.0241844866560677!GO:0033619;membrane protein proteolysis;0.0241844866560677!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0242989751204421!GO:0016044;membrane organization and biogenesis;0.0249952045233702!GO:0006695;cholesterol biosynthetic process;0.0250875451454087!GO:0045893;positive regulation of transcription, DNA-dependent;0.0252863569873104!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0254922676287914!GO:0007569;cell aging;0.0258893045085483!GO:0006268;DNA unwinding during replication;0.0263359344524149!GO:0006118;electron transport;0.0265704936365271!GO:0000910;cytokinesis;0.0265704936365271!GO:0009303;rRNA transcription;0.0267199723651607!GO:0003702;RNA polymerase II transcription factor activity;0.0268847830012016!GO:0030508;thiol-disulfide exchange intermediate activity;0.0268899434122626!GO:0022408;negative regulation of cell-cell adhesion;0.0274940213651869!GO:0016408;C-acyltransferase activity;0.027574483928354!GO:0043241;protein complex disassembly;0.0275828178500978!GO:0006779;porphyrin biosynthetic process;0.0275828178500978!GO:0033014;tetrapyrrole biosynthetic process;0.0275828178500978!GO:0008538;proteasome activator activity;0.0276972854544707!GO:0000209;protein polyubiquitination;0.0279570172233294!GO:0005758;mitochondrial intermembrane space;0.0279570172233294!GO:0007021;tubulin folding;0.0282292683348435!GO:0031625;ubiquitin protein ligase binding;0.0284518603395674!GO:0008637;apoptotic mitochondrial changes;0.028506835955662!GO:0035035;histone acetyltransferase binding;0.028506835955662!GO:0006892;post-Golgi vesicle-mediated transport;0.0289371511387104!GO:0006376;mRNA splice site selection;0.0297565874961793!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0297565874961793!GO:0042393;histone binding;0.0299048023944357!GO:0003756;protein disulfide isomerase activity;0.0299060039834774!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0299060039834774!GO:0001952;regulation of cell-matrix adhesion;0.0299357226473277!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0300374126662385!GO:0048146;positive regulation of fibroblast proliferation;0.0301119028237212!GO:0006289;nucleotide-excision repair;0.0302455295483773!GO:0006749;glutathione metabolic process;0.0302455295483773!GO:0005774;vacuolar membrane;0.0305888815814945!GO:0004722;protein serine/threonine phosphatase activity;0.0311191995901394!GO:0030119;AP-type membrane coat adaptor complex;0.032046568829423!GO:0051101;regulation of DNA binding;0.0337763423945992!GO:0005096;GTPase activator activity;0.0339247765319678!GO:0012506;vesicle membrane;0.0344819896641582!GO:0006506;GPI anchor biosynthetic process;0.0344819896641582!GO:0043596;nuclear replication fork;0.0344819896641582!GO:0005784;translocon complex;0.0344819896641582!GO:0006458;'de novo' protein folding;0.0346792993761845!GO:0051084;'de novo' posttranslational protein folding;0.0346792993761845!GO:0008022;protein C-terminus binding;0.0346792993761845!GO:0051270;regulation of cell motility;0.0348351030615717!GO:0015036;disulfide oxidoreductase activity;0.0348351030615717!GO:0008629;induction of apoptosis by intracellular signals;0.0348752390944903!GO:0006790;sulfur metabolic process;0.0354892183081109!GO:0031272;regulation of pseudopodium formation;0.0356327602605673!GO:0031269;pseudopodium formation;0.0356327602605673!GO:0031344;regulation of cell projection organization and biogenesis;0.0356327602605673!GO:0031268;pseudopodium organization and biogenesis;0.0356327602605673!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0356327602605673!GO:0031274;positive regulation of pseudopodium formation;0.0356327602605673!GO:0031123;RNA 3'-end processing;0.0362005367042639!GO:0030496;midbody;0.0363248831431092!GO:0047485;protein N-terminus binding;0.0367820393194702!GO:0007346;regulation of progression through mitotic cell cycle;0.0367970177979924!GO:0033559;unsaturated fatty acid metabolic process;0.0369130868142509!GO:0006636;unsaturated fatty acid biosynthetic process;0.0369130868142509!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0370388399050907!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0370388399050907!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0370388399050907!GO:0050681;androgen receptor binding;0.037381961359488!GO:0000178;exosome (RNase complex);0.0379053412741171!GO:0005586;collagen type III;0.0380804668803168!GO:0006378;mRNA polyadenylation;0.0383993962142119!GO:0005801;cis-Golgi network;0.038972132748049!GO:0031371;ubiquitin conjugating enzyme complex;0.038972132748049!GO:0009119;ribonucleoside metabolic process;0.0390472249086084!GO:0043433;negative regulation of transcription factor activity;0.0398752372995435!GO:0043130;ubiquitin binding;0.0402573439138612!GO:0032182;small conjugating protein binding;0.0402573439138612!GO:0030911;TPR domain binding;0.0403451805620825!GO:0031901;early endosome membrane;0.0405792904048186!GO:0006672;ceramide metabolic process;0.0423354507007211!GO:0022415;viral reproductive process;0.0425034340032914!GO:0022411;cellular component disassembly;0.0438441549289753!GO:0042770;DNA damage response, signal transduction;0.0443429994712665!GO:0006505;GPI anchor metabolic process;0.0444861806320756!GO:0006596;polyamine biosynthetic process;0.0447361994458936!GO:0031970;organelle envelope lumen;0.0453952751327262!GO:0042326;negative regulation of phosphorylation;0.0454407134987721!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0456091512845078!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0456091512845078!GO:0010257;NADH dehydrogenase complex assembly;0.0456091512845078!GO:0033108;mitochondrial respiratory chain complex assembly;0.0456091512845078!GO:0046519;sphingoid metabolic process;0.045655249387254!GO:0006007;glucose catabolic process;0.0459640127932318!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0460141533441218!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0465094884615701!GO:0051059;NF-kappaB binding;0.0481051051533108!GO:0051098;regulation of binding;0.0481051051533108!GO:0045926;negative regulation of growth;0.0481051051533108!GO:0009124;nucleoside monophosphate biosynthetic process;0.0485003465599209!GO:0009123;nucleoside monophosphate metabolic process;0.0485003465599209!GO:0022406;membrane docking;0.0485003465599209!GO:0048278;vesicle docking;0.0485003465599209 | |||
|sample_id=11332 | |sample_id=11332 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=prostate | |sample_tissue=prostate | ||
|top_motifs=ALX4:2.07714028941;TAL1_TCF{3,4,12}:1.87430519505;UFEwm:1.86495777062;NKX2-2,8:1.73989258974;KLF4:1.37924870087;POU3F1..4:1.32380169915;PAX1,9:1.26289758991;GZF1:1.25372191675;AIRE:1.22098207358;ZNF238:1.2182203062;XBP1:1.21704314967;EVI1:1.21036281304;ZNF384:1.18566840744;HSF1,2:1.15348434387;EN1,2:1.10590486392;ESR1:1.09144085175;TOPORS:1.0602591926;MYBL2:1.05629113642;HES1:1.04531559142;PAX4:1.02068057672;NKX3-1:0.963513145423;PPARG:0.87687975329;TEF:0.829830331462;NFE2L1:0.820520221795;FOXD3:0.817396641228;GFI1B:0.762563947722;NR3C1:0.751182936396;SRF:0.72894183298;HOX{A5,B5}:0.708941405302;YY1:0.686412325378;RXR{A,B,G}:0.674585117085;TFAP4:0.653963826545;GATA4:0.64886154594;TEAD1:0.648203057824;ZIC1..3:0.61442474536;HMX1:0.607792708915;NR1H4:0.602844269018;CDC5L:0.588849662214;MYB:0.582064744777;ZNF423:0.577547369488;TBP:0.514783346629;GFI1:0.513364037526;MAFB:0.501993707032;TP53:0.495860438594;GLI1..3:0.487909567538;GTF2A1,2:0.468327562822;RXRA_VDR{dimer}:0.455744823222;TLX1..3_NFIC{dimer}:0.418951049083;NKX6-1,2:0.412271779762;PDX1:0.397562811581;E2F1..5:0.386135028965;EBF1:0.34368217079;STAT5{A,B}:0.330377699516;SPZ1:0.303389354762;HMGA1,2:0.300891473459;FOXL1:0.30005303627;bHLH_family:0.290553410068;PRDM1:0.284511712166;MTE{core}:0.26972453251;ATF6:0.261455997474;XCPE1{core}:0.258992373026;IKZF1:0.255851037635;HNF4A_NR2F1,2:0.240234436791;HOX{A4,D4}:0.228008231958;PAX8:0.222347075616;ONECUT1,2:0.217103124777;HLF:0.2120174635;FOX{I1,J2}:0.207463194107;CDX1,2,4:0.19245710971;TFCP2:0.191461543885;TBX4,5:0.191048329561;HOXA9_MEIS1:0.182220708982;LHX3,4:0.17758968693;TFDP1:0.177568707719;NFIX:0.170479286108;NR6A1:0.156411989943;POU5F1:0.147866729467;PAX5:0.147429842269;ELK1,4_GABP{A,B1}:0.144481651423;GTF2I:0.127762551937;PBX1:0.124233791178;BACH2:0.119580986339;NHLH1,2:0.112152971333;CRX:0.0982534199826;FOXQ1:0.0859983875805;NFE2L2:0.0762733638449;ZBTB6:0.0685953828987;PATZ1:0.0658417263692;ZNF143:0.0599889412985;MZF1:0.055250000472;IRF1,2:0.0431222929517;ARID5B:0.017670686461;NR5A1,2:0.0146446694346;MYFfamily:0.00798429243734;ZBTB16:-0.00072205566508;NFY{A,B,C}:-0.00498176205114;CEBPA,B_DDIT3:-0.029525621475;ESRRA:-0.0422119883508;FOS_FOS{B,L1}_JUN{B,D}:-0.0471759331748;LEF1_TCF7_TCF7L1,2:-0.054970763502;NRF1:-0.068339505905;HIC1:-0.110629391937;PAX3,7:-0.112714343011;RFX1:-0.13040609029;DBP:-0.14527501644;AHR_ARNT_ARNT2:-0.15926108056;HNF1A:-0.163558624536;TFAP2B:-0.172331414777;NANOG{mouse}:-0.17260503591;DMAP1_NCOR{1,2}_SMARC:-0.179213375698;NFE2:-0.18167706383;FOXO1,3,4:-0.200703471813;FOSL2:-0.205251364316;FOXP1:-0.219993850451;PITX1..3:-0.221455591922;NFKB1_REL_RELA:-0.247863792432;REST:-0.250943978212;NKX3-2:-0.25307607422;FOXM1:-0.253953706669;ZNF148:-0.259487959367;LMO2:-0.260457646565;ZFP161:-0.264318854378;SOX17:-0.276564114895;EGR1..3:-0.290302232001;RREB1:-0.293057661631;MAZ:-0.317602411873;HAND1,2:-0.31812704417;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.328992666553;TFAP2{A,C}:-0.335800369049;NFATC1..3:-0.353709316257;T:-0.374084761439;OCT4_SOX2{dimer}:-0.384603116469;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.385785823016;POU2F1..3:-0.391556791096;RUNX1..3:-0.436322797734;SMAD1..7,9:-0.4527431695;AR:-0.466894228243;SP1:-0.473088499421;CUX2:-0.483418721574;BPTF:-0.487448188522;STAT2,4,6:-0.490757427615;IRF7:-0.505745095608;FOXP3:-0.517468126203;MTF1:-0.519708200062;NKX2-1,4:-0.534471121698;CREB1:-0.554270856135;SPI1:-0.572581103647;NFIL3:-0.578049837028;ELF1,2,4:-0.578532723384;STAT1,3:-0.591823428607;POU1F1:-0.599850157437;PRRX1,2:-0.607473594609;SREBF1,2:-0.618626136618;BREu{core}:-0.629104619689;POU6F1:-0.66207103969;IKZF2:-0.663766540181;MED-1{core}:-0.666301202542;JUN:-0.685934978418;NKX2-3_NKX2-5:-0.688728535707;TLX2:-0.700348447783;MEF2{A,B,C,D}:-0.700438909885;ETS1,2:-0.701984900714;TGIF1:-0.732221291518;SOX2:-0.733232858536;SNAI1..3:-0.735422585644;ALX1:-0.743163770366;SOX5:-0.747412042452;GATA6:-0.752371922276;ADNP_IRX_SIX_ZHX:-0.755345737021;RFX2..5_RFXANK_RFXAP:-0.768377443542;SOX{8,9,10}:-0.770035220887;SPIB:-0.776480805056;MYOD1:-0.781515757707;GCM1,2:-0.840215906226;FOX{D1,D2}:-0.853760087767;ATF5_CREB3:-0.854817071094;ATF4:-0.874259461867;FOX{F1,F2,J1}:-0.875739197157;PAX2:-0.881149506609;HIF1A:-0.90033380557;FOXA2:-0.900497794107;RORA:-0.909871969443;ATF2:-0.917522765642;HBP1_HMGB_SSRP1_UBTF:-0.932313431637;EP300:-0.935424441369;PAX6:-1.02588621276;VSX1,2:-1.04687974462;ZEB1:-1.06481232579;FOXN1:-1.14964411318;HOX{A6,A7,B6,B7}:-1.1859013344;RBPJ:-1.19948117692;NANOG:-1.52462978325 | |top_motifs=ALX4:2.07714028941;TAL1_TCF{3,4,12}:1.87430519505;UFEwm:1.86495777062;NKX2-2,8:1.73989258974;KLF4:1.37924870087;POU3F1..4:1.32380169915;PAX1,9:1.26289758991;GZF1:1.25372191675;AIRE:1.22098207358;ZNF238:1.2182203062;XBP1:1.21704314967;EVI1:1.21036281304;ZNF384:1.18566840744;HSF1,2:1.15348434387;EN1,2:1.10590486392;ESR1:1.09144085175;TOPORS:1.0602591926;MYBL2:1.05629113642;HES1:1.04531559142;PAX4:1.02068057672;NKX3-1:0.963513145423;PPARG:0.87687975329;TEF:0.829830331462;NFE2L1:0.820520221795;FOXD3:0.817396641228;GFI1B:0.762563947722;NR3C1:0.751182936396;SRF:0.72894183298;HOX{A5,B5}:0.708941405302;YY1:0.686412325378;RXR{A,B,G}:0.674585117085;TFAP4:0.653963826545;GATA4:0.64886154594;TEAD1:0.648203057824;ZIC1..3:0.61442474536;HMX1:0.607792708915;NR1H4:0.602844269018;CDC5L:0.588849662214;MYB:0.582064744777;ZNF423:0.577547369488;TBP:0.514783346629;GFI1:0.513364037526;MAFB:0.501993707032;TP53:0.495860438594;GLI1..3:0.487909567538;GTF2A1,2:0.468327562822;RXRA_VDR{dimer}:0.455744823222;TLX1..3_NFIC{dimer}:0.418951049083;NKX6-1,2:0.412271779762;PDX1:0.397562811581;E2F1..5:0.386135028965;EBF1:0.34368217079;STAT5{A,B}:0.330377699516;SPZ1:0.303389354762;HMGA1,2:0.300891473459;FOXL1:0.30005303627;bHLH_family:0.290553410068;PRDM1:0.284511712166;MTE{core}:0.26972453251;ATF6:0.261455997474;XCPE1{core}:0.258992373026;IKZF1:0.255851037635;HNF4A_NR2F1,2:0.240234436791;HOX{A4,D4}:0.228008231958;PAX8:0.222347075616;ONECUT1,2:0.217103124777;HLF:0.2120174635;FOX{I1,J2}:0.207463194107;CDX1,2,4:0.19245710971;TFCP2:0.191461543885;TBX4,5:0.191048329561;HOXA9_MEIS1:0.182220708982;LHX3,4:0.17758968693;TFDP1:0.177568707719;NFIX:0.170479286108;NR6A1:0.156411989943;POU5F1:0.147866729467;PAX5:0.147429842269;ELK1,4_GABP{A,B1}:0.144481651423;GTF2I:0.127762551937;PBX1:0.124233791178;BACH2:0.119580986339;NHLH1,2:0.112152971333;CRX:0.0982534199826;FOXQ1:0.0859983875805;NFE2L2:0.0762733638449;ZBTB6:0.0685953828987;PATZ1:0.0658417263692;ZNF143:0.0599889412985;MZF1:0.055250000472;IRF1,2:0.0431222929517;ARID5B:0.017670686461;NR5A1,2:0.0146446694346;MYFfamily:0.00798429243734;ZBTB16:-0.00072205566508;NFY{A,B,C}:-0.00498176205114;CEBPA,B_DDIT3:-0.029525621475;ESRRA:-0.0422119883508;FOS_FOS{B,L1}_JUN{B,D}:-0.0471759331748;LEF1_TCF7_TCF7L1,2:-0.054970763502;NRF1:-0.068339505905;HIC1:-0.110629391937;PAX3,7:-0.112714343011;RFX1:-0.13040609029;DBP:-0.14527501644;AHR_ARNT_ARNT2:-0.15926108056;HNF1A:-0.163558624536;TFAP2B:-0.172331414777;NANOG{mouse}:-0.17260503591;DMAP1_NCOR{1,2}_SMARC:-0.179213375698;NFE2:-0.18167706383;FOXO1,3,4:-0.200703471813;FOSL2:-0.205251364316;FOXP1:-0.219993850451;PITX1..3:-0.221455591922;NFKB1_REL_RELA:-0.247863792432;REST:-0.250943978212;NKX3-2:-0.25307607422;FOXM1:-0.253953706669;ZNF148:-0.259487959367;LMO2:-0.260457646565;ZFP161:-0.264318854378;SOX17:-0.276564114895;EGR1..3:-0.290302232001;RREB1:-0.293057661631;MAZ:-0.317602411873;HAND1,2:-0.31812704417;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.328992666553;TFAP2{A,C}:-0.335800369049;NFATC1..3:-0.353709316257;T:-0.374084761439;OCT4_SOX2{dimer}:-0.384603116469;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.385785823016;POU2F1..3:-0.391556791096;RUNX1..3:-0.436322797734;SMAD1..7,9:-0.4527431695;AR:-0.466894228243;SP1:-0.473088499421;CUX2:-0.483418721574;BPTF:-0.487448188522;STAT2,4,6:-0.490757427615;IRF7:-0.505745095608;FOXP3:-0.517468126203;MTF1:-0.519708200062;NKX2-1,4:-0.534471121698;CREB1:-0.554270856135;SPI1:-0.572581103647;NFIL3:-0.578049837028;ELF1,2,4:-0.578532723384;STAT1,3:-0.591823428607;POU1F1:-0.599850157437;PRRX1,2:-0.607473594609;SREBF1,2:-0.618626136618;BREu{core}:-0.629104619689;POU6F1:-0.66207103969;IKZF2:-0.663766540181;MED-1{core}:-0.666301202542;JUN:-0.685934978418;NKX2-3_NKX2-5:-0.688728535707;TLX2:-0.700348447783;MEF2{A,B,C,D}:-0.700438909885;ETS1,2:-0.701984900714;TGIF1:-0.732221291518;SOX2:-0.733232858536;SNAI1..3:-0.735422585644;ALX1:-0.743163770366;SOX5:-0.747412042452;GATA6:-0.752371922276;ADNP_IRX_SIX_ZHX:-0.755345737021;RFX2..5_RFXANK_RFXAP:-0.768377443542;SOX{8,9,10}:-0.770035220887;SPIB:-0.776480805056;MYOD1:-0.781515757707;GCM1,2:-0.840215906226;FOX{D1,D2}:-0.853760087767;ATF5_CREB3:-0.854817071094;ATF4:-0.874259461867;FOX{F1,F2,J1}:-0.875739197157;PAX2:-0.881149506609;HIF1A:-0.90033380557;FOXA2:-0.900497794107;RORA:-0.909871969443;ATF2:-0.917522765642;HBP1_HMGB_SSRP1_UBTF:-0.932313431637;EP300:-0.935424441369;PAX6:-1.02588621276;VSX1,2:-1.04687974462;ZEB1:-1.06481232579;FOXN1:-1.14964411318;HOX{A6,A7,B6,B7}:-1.1859013344;RBPJ:-1.19948117692;NANOG:-1.52462978325 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11332-117E9;search_select_hide=table117:FF:11332-117E9 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Prostate Stromal Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11973 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11973
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11973
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.425 |
| 10 | 10 | 0.0317 |
| 100 | 100 | 0.0408 |
| 101 | 101 | 0.481 |
| 102 | 102 | 0.26 |
| 103 | 103 | 0.474 |
| 104 | 104 | 0.47 |
| 105 | 105 | 0.0294 |
| 106 | 106 | 0.683 |
| 107 | 107 | 0.0486 |
| 108 | 108 | 0.358 |
| 109 | 109 | 0.143 |
| 11 | 11 | 0.22 |
| 110 | 110 | 0.0868 |
| 111 | 111 | 0.747 |
| 112 | 112 | 0.618 |
| 113 | 113 | 0.518 |
| 114 | 114 | 0.849 |
| 115 | 115 | 0.0093 |
| 116 | 116 | 0.00275 |
| 117 | 117 | 0.302 |
| 118 | 118 | 0.386 |
| 119 | 119 | 0.967 |
| 12 | 12 | 0.071 |
| 120 | 120 | 0.0338 |
| 121 | 121 | 0.304 |
| 122 | 122 | 0.00792 |
| 123 | 123 | 0.123 |
| 124 | 124 | 0.772 |
| 125 | 125 | 0.18 |
| 126 | 126 | 0.966 |
| 127 | 127 | 0.976 |
| 128 | 128 | 0.773 |
| 129 | 129 | 0.122 |
| 13 | 13 | 0.248 |
| 130 | 130 | 0.587 |
| 131 | 131 | 0.369 |
| 132 | 132 | 0.525 |
| 133 | 133 | 0.529 |
| 134 | 134 | 0.413 |
| 135 | 135 | 0.256 |
| 136 | 136 | 0.0816 |
| 137 | 137 | 0.311 |
| 138 | 138 | 0.356 |
| 139 | 139 | 0.884 |
| 14 | 14 | 0.061 |
| 140 | 140 | 0.563 |
| 141 | 141 | 0.328 |
| 142 | 142 | 0.332 |
| 143 | 143 | 0.651 |
| 144 | 144 | 0.591 |
| 145 | 145 | 0.702 |
| 146 | 146 | 0.124 |
| 147 | 147 | 0.0663 |
| 148 | 148 | 0.39 |
| 149 | 149 | 0.137 |
| 15 | 15 | 0.597 |
| 150 | 150 | 0.225 |
| 151 | 151 | 0.935 |
| 152 | 152 | 0.062 |
| 153 | 153 | 0.856 |
| 154 | 154 | 0.566 |
| 155 | 155 | 0.198 |
| 156 | 156 | 0.772 |
| 157 | 157 | 0.166 |
| 158 | 158 | 0.0233 |
| 159 | 159 | 0.47 |
| 16 | 16 | 0.0343 |
| 160 | 160 | 0.418 |
| 161 | 161 | 0.575 |
| 162 | 162 | 0.437 |
| 163 | 163 | 0.885 |
| 164 | 164 | 0.0735 |
| 165 | 165 | 0.943 |
| 166 | 166 | 0.0287 |
| 167 | 167 | 0.664 |
| 168 | 168 | 0.185 |
| 169 | 169 | 0.0127 |
| 17 | 17 | 0.915 |
| 18 | 18 | 0.123 |
| 19 | 19 | 0.00189 |
| 2 | 2 | 0.551 |
| 20 | 20 | 0.745 |
| 21 | 21 | 0.0278 |
| 22 | 22 | 0.525 |
| 23 | 23 | 0.932 |
| 24 | 24 | 0.732 |
| 25 | 25 | 0.437 |
| 26 | 26 | 0.126 |
| 27 | 27 | 0.832 |
| 28 | 28 | 0.156 |
| 29 | 29 | 0.15 |
| 3 | 3 | 0.326 |
| 30 | 30 | 0.87 |
| 31 | 31 | 0.702 |
| 32 | 32 | 4.44196e-11 |
| 33 | 33 | 0.754 |
| 34 | 34 | 0.649 |
| 35 | 35 | 0.675 |
| 36 | 36 | 0.456 |
| 37 | 37 | 0.0228 |
| 38 | 38 | 0.48 |
| 39 | 39 | 0.334 |
| 4 | 4 | 0.137 |
| 40 | 40 | 0.985 |
| 41 | 41 | 0.0264 |
| 42 | 42 | 0.886 |
| 43 | 43 | 0.881 |
| 44 | 44 | 0.00761 |
| 45 | 45 | 0.195 |
| 46 | 46 | 0.239 |
| 47 | 47 | 0.565 |
| 48 | 48 | 0.54 |
| 49 | 49 | 0.569 |
| 5 | 5 | 0.348 |
| 50 | 50 | 0.7 |
| 51 | 51 | 0.845 |
| 52 | 52 | 0.772 |
| 53 | 53 | 0.26 |
| 54 | 54 | 0.762 |
| 55 | 55 | 0.44 |
| 56 | 56 | 0.761 |
| 57 | 57 | 0.746 |
| 58 | 58 | 0.664 |
| 59 | 59 | 0.118 |
| 6 | 6 | 0.226 |
| 60 | 60 | 0.895 |
| 61 | 61 | 0.901 |
| 62 | 62 | 0.776 |
| 63 | 63 | 0.371 |
| 64 | 64 | 0.868 |
| 65 | 65 | 0.624 |
| 66 | 66 | 0.772 |
| 67 | 67 | 0.792 |
| 68 | 68 | 0.694 |
| 69 | 69 | 0.558 |
| 7 | 7 | 0.389 |
| 70 | 70 | 0.929 |
| 71 | 71 | 0.0206 |
| 72 | 72 | 0.434 |
| 73 | 73 | 0.0187 |
| 74 | 74 | 0.0565 |
| 75 | 75 | 0.145 |
| 76 | 76 | 0.786 |
| 77 | 77 | 0.147 |
| 78 | 78 | 0.36 |
| 79 | 79 | 0.00174 |
| 8 | 8 | 0.0185 |
| 80 | 80 | 0.0181 |
| 81 | 81 | 0.704 |
| 82 | 82 | 0.902 |
| 83 | 83 | 0.95 |
| 84 | 84 | 0.975 |
| 85 | 85 | 0.918 |
| 86 | 86 | 0.371 |
| 87 | 87 | 0.124 |
| 88 | 88 | 0.308 |
| 89 | 89 | 0.0887 |
| 9 | 9 | 0.975 |
| 90 | 90 | 0.79 |
| 91 | 91 | 0.839 |
| 92 | 92 | 0.781 |
| 93 | 93 | 0.241 |
| 94 | 94 | 0.388 |
| 95 | 95 | 0.0604 |
| 96 | 96 | 0.588 |
| 97 | 97 | 0.898 |
| 98 | 98 | 0.178 |
| 99 | 99 | 0.00233 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11973
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002622 (prostate stromal cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0002384 (connective tissue)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000277 (human prostate stromal cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
