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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004717
|DRA_sample_Accession=CAGE@SAMD00004717
|accession_numbers=CAGE;DRX008465;DRR009337;DRZ000762;DRZ002147
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004717
|accession_numbers=CAGE;DRX008465;DRR009337;DRZ000762;DRZ002147;DRZ012112;DRZ013497
|accession_numbers_RNASeq=sRNA-Seq;DRX037088;DRR041454;DRZ007096
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
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|def=
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.24!171.63!EHF;;chr17:7493405..7493419,-!p1@SOX15!2.06!115.12!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.04!121.85!IRF6;;chr3:189507432..189507459,+!p1@TP63!2.04!109.16!TP63;;chr1:6479968..6479986,-!p1@HES2!1.94!86.10!HES2;;chr15:83953397..83953425,-!p1@BNC1!1.93!95.13!BNC1;;chr1:209979411..209979433,-!p2@IRF6!1.74!54.58!IRF6;;chr17:7492684..7492778,-!p2@SOX15!1.71!102.63!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.65!70.53!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.59!37.48!IRX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.58!55.93!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.56!42.47!TFAP2A;;chr6:34524093..34524135,-!p1@SPDEF!1.42!25.37!SPDEF;;chr12:54785054..54785072,-!p4@ZNF385A!1.41!27.87!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.37!229.47!KLF5;;chr6:34524025..34524045,-!p3@SPDEF!1.35!21.14!SPDEF;;chr5:2751785..2751808,-!p2@IRX2!1.33!20.56!IRX2;;chr8:10588010..10588030,-!p1@SOX7!1.32!19.80!SOX7;;chr6:34524049..34524089,-!p2@SPDEF!1.29!18.45!SPDEF;;chr8:49833948..49833973,-!p2@SNAI2!1.28!111.66!SNAI2;;chr3:111314186..111314204,-!p1@ZBED2!1.24!16.53!ZBED2;;chr11:34645791..34645836,+!p3@EHF!1.22!15.57!EHF;;chr19:45908292..45908374,-!p1@PPP1R13L!1.21!134.15!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.20!41.13!EPAS1;;chr14:37051798..37051831,-!p1@NKX2-8!1.20!14.99!NKX2-8;;chr8:49833978..49833996,-!p1@SNAI2!1.19!294.82!SNAI2;;chr5:134369905..134369972,-!p1@PITX1!1.17!21.33!PITX1;;chr8:102504651..102504683,+!p1@GRHL2!1.12!12.30!GRHL2;;chr15:83953373..83953386,-!p2@BNC1!1.12!12.30!BNC1;;chr12:66218836..66218888,+!p1@HMGA2!1.09!104.94!HMGA2;;chr6:10415484..10415508,-!p3@TFAP2A!1.09!11.34!TFAP2A;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.02!HMGA2;;chr14:62162285..62162296,+!p3@HIF1A!1.05!53.24!HIF1A;;chr16:86612320..86612394,+!p1@FOXL1!1.01!9.23!FOXL1;;chr6:10412576..10412599,-!p5@TFAP2A!1.00!9.03!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.99!8.84!PAX9;;chr22:19748231..19748317,+!p1@TBX1!0.99!8.84!TBX1;;chr3:189507523..189507535,+!p5@TP63!0.98!8.65!TP63;;chr14:38064429..38064486,-!p1@FOXA1!0.96!8.07!FOXA1;;chr11:34642656..34642667,+!p2@EHF!0.95!7.88!EHF;;chr6:10413188..10413249,-!p7@TFAP2A!0.95!7.88!TFAP2A;;chr2:122042770..122042785,-!p1@TFCP2L1!0.94!7.69!TFCP2L1;;chr2:208030647..208030689,-!p1@KLF7!0.92!63.42!KLF7;;chr12:66218598..66218645,+!p2@HMGA2!0.89!32.48!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!0.89!8.65!TFAP2C;;chr14:62162258..62162269,+!p2@HIF1A!0.88!66.11!HIF1A;;chr5:134369879..134369898,-!p2@PITX1!0.88!6.53!PITX1;;chr19:42636586..42636607,-!p1@POU2F2!0.87!18.45!POU2F2;;chr19:9811347..9811351,-!p1@ZNF812!0.87!6.34!ZNF812;;chr17:80797886..80797906,-!p1@ZNF750!0.87!6.34!ZNF750;;chr3:189507460..189507471,+!p3@TP63!0.87!6.34!TP63;;chr6:15246200..15246214,+!p2@JARID2!0.86!18.07!JARID2;;chr2:60778035..60778060,-!p4@BCL11A!0.85!7.30!BCL11A;;chr13:73636252..73636307,+!p2@KLF5!0.84!6.92!KLF5;;chr1:209979449..209979460,-!p3@IRF6!0.84!5.96!IRF6;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.96!KDM5D;;chr1:935467..935484,-!p1@HES4!0.83!27.48!HES4;;chr19:33865009..33865090,+!p3@CEBPG!0.83!7.88!CEBPG;;chr2:70142232..70142251,+!p1@MXD1!0.82!34.02!MXD1;;chr6:1312325..1312340,+!p1@FOXQ1!0.82!9.42!FOXQ1;;chr20:22564895..22564910,-!p1@FOXA2!0.82!5.57!FOXA2;;chr18:19749541..19749557,+!p1@GATA6!0.81!18.26!GATA6;;chr1:935398..935465,-!p2@HES4!0.81!11.72!HES4;;chr11:128392273..128392308,-!p2@ETS1!0.80!24.22!ETS1;;chr16:79634624..79634642,-!p1@MAF!0.79!21.72!MAF;;chr4:57547454..57547469,-!p1@HOPX!0.78!5.00!HOPX;;chr2:10091815..10091864,+!p1@GRHL1!0.76!6.53!GRHL1;;chr1:201979703..201979721,+!p2@ELF3!0.76!4.80!ELF3;;chr12:48298765..48298783,-!p2@VDR!0.75!10.38!VDR;;chr17:41622925..41622976,-!p3@ETV4!0.74!7.11!ETV4;;chr6:126102292..126102329,+!p3@NCOA7!0.73!15.76!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!0.73!12.30!NCOA7;;chr1:209979375..209979386,-!p4@IRF6!0.73!4.42!IRF6;;chr12:77459306..77459365,-!p1@E2F7!0.72!59.77!E2F7;;chr1:158979792..158979814,+!p2@IFI16!0.72!45.93!IFI16;;chr19:45579725..45579743,-!p1@ZNF296!0.72!21.33!ZNF296;;chr2:46524878..46524891,+!p3@EPAS1!0.72!7.88!EPAS1;;chr1:37945588..37945604,+!p3@ZC3H12A!0.72!4.23!ZC3H12A;;chr20:22565185..22565223,-!p3@FOXA2!0.72!4.23!FOXA2;;chr17:7492504..7492520,-!p3@SOX15!0.72!4.23!SOX15;;chr21:40177845..40177863,+!p1@ETS2!0.71!279.25!ETS2;;chrX:48900782..48900793,-!p3@TFE3!0.70!8.07!TFE3;;chr3:169381420..169381535,-!p1@MECOM!0.70!4.80!MECOM;;chr8:102504690..102504704,+!p3@GRHL2!0.70!4.04!GRHL2;;chr20:22565370..22565388,-!p2@FOXA2!0.69!3.84!FOXA2;;chr12:66218904..66218913,+!p11@HMGA2!0.69!3.84!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.67!7.11!GATA6;;chr6:10415263..10415274,-!p8@TFAP2A!0.67!3.65!TFAP2A;;chr12:80084737..80084763,-!p3@PAWR!0.66!15.18!PAWR;;chr12:66218212..66218244,+!p5@HMGA2!0.66!5.57!HMGA2;;chr16:67881588..67881612,-!p2@CENPT!0.66!5.19!CENPT;;chr6:10412392..10412409,-!p4@TFAP2A!0.66!4.23!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.65!64.96!KLF4;;chr3:5021268..5021282,+!p4@BHLHE40!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065
|ffid_belonging_in_development=CL:0000223
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg38.nobarcode.ctss.bed.gz
|id=FF:11334-117F2
|id=FF:11334-117F2
|is_a=EFO:0002091;;FF:0000166
|is_a=EFO:0002091;;FF:0000166
Line 46: Line 54:
|library_id=CNhs11975
|library_id=CNhs11975
|library_id_phase_based=2:CNhs11975
|library_id_phase_based=2:CNhs11975
|name="Small Airway Epithelial Cells, donor2"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11334
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GAGTGG.11334
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11334
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GAGTGG.11334
|name=Small Airway Epithelial Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11975,LSID836,release011,COMPLETED"
|profile_hcage=CNhs11975,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq="SRhi10006,,,"
|profile_srnaseq=SRhi10006,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=TP53:2.55845924808;TBX4,5:2.32894301797;PPARG:1.96964636673;ZEB1:1.88524599164;TEF:1.72845182751;HIF1A:1.52498732462;VSX1,2:1.43623527952;ONECUT1,2:1.40354248059;T:1.38759646471;SNAI1..3:1.35552468063;TFCP2:1.0845906586;TEAD1:1.06060866472;ADNP_IRX_SIX_ZHX:1.02082167568;PAX1,9:1.00918831884;XCPE1{core}:0.995964864099;TFAP2{A,C}:0.964302422492;ARID5B:0.940036072349;ZNF148:0.894065897043;MTF1:0.841723446542;MYOD1:0.838819319216;UFEwm:0.798806993454;NKX2-1,4:0.679858353924;GLI1..3:0.64752556863;POU6F1:0.611332199802;ELK1,4_GABP{A,B1}:0.60986097406;TFAP2B:0.593757615412;TLX2:0.57974938406;MAZ:0.556693755016;FOXQ1:0.526265908535;TFDP1:0.504634358708;SP1:0.503311479673;bHLH_family:0.502808240656;SOX17:0.502587571677;HLF:0.502246944309;NKX2-2,8:0.486995093658;LMO2:0.459926876673;CEBPA,B_DDIT3:0.439767522912;FOS_FOS{B,L1}_JUN{B,D}:0.426948964506;GZF1:0.425128465814;NKX2-3_NKX2-5:0.424398149109;NKX3-2:0.379995638156;EGR1..3:0.369374449862;TFAP4:0.337396402833;PAX4:0.32668362122;HAND1,2:0.317943430195;TOPORS:0.317408567326;MED-1{core}:0.304834815113;POU1F1:0.29882950457;PAX5:0.285315394798;HOX{A4,D4}:0.284549622623;NR5A1,2:0.267884143957;HMGA1,2:0.23997288168;KLF4:0.2379831007;FOSL2:0.220380057953;BACH2:0.219084600269;GTF2A1,2:0.198929399965;IKZF1:0.198568267126;HIC1:0.192701012338;HOX{A6,A7,B6,B7}:0.192370308594;FOXM1:0.190865279692;SPZ1:0.186092677121;TBP:0.181036624669;ZBTB6:0.179241398214;FOXN1:0.178773080894;AR:0.178474730932;ZNF423:0.173994861238;EVI1:0.172489975151;NKX3-1:0.167992436405;POU3F1..4:0.154564464968;PITX1..3:0.152402129955;PAX2:0.138060385564;RXR{A,B,G}:0.13270825572;EBF1:0.118414445613;NR3C1:0.112947427615;FOXL1:0.0975912626394;STAT5{A,B}:0.0872603710065;ATF4:0.0843080002864;MTE{core}:0.0691329045781;NFIL3:0.0664223092409;HMX1:0.0372568910081;ESR1:0.0358343943832;RXRA_VDR{dimer}:0.0308259741694;ZFP161:0.0238741252562;POU2F1..3:0.0116657388883;NFIX:0.0033497568876;SMAD1..7,9:-0.0200867252844;NR6A1:-0.0204551404248;ZIC1..3:-0.0222159784273;HSF1,2:-0.0329350130691;CRX:-0.0584149218673;CDC5L:-0.0806409651599;AIRE:-0.0852658860024;REST:-0.0856907844688;ALX4:-0.0951874883619;ZNF238:-0.0956029816743;ZBTB16:-0.104483991044;FOX{F1,F2,J1}:-0.107577856242;RBPJ:-0.124706807535;GFI1B:-0.131985728738;FOXO1,3,4:-0.136656466688;ZNF143:-0.13879871104;MYBL2:-0.168046102955;NFE2:-0.172204366111;NFKB1_REL_RELA:-0.183253834471;TLX1..3_NFIC{dimer}:-0.189073661772;NANOG{mouse}:-0.196753741204;HNF1A:-0.199161041023;MAFB:-0.203651591618;GTF2I:-0.212826126407;ELF1,2,4:-0.229281109027;CREB1:-0.239558092106;PAX8:-0.264952163559;LHX3,4:-0.299284632254;SPI1:-0.304572305753;ETS1,2:-0.318907942073;LEF1_TCF7_TCF7L1,2:-0.325886595919;SOX2:-0.326322826384;NANOG:-0.344758647285;ATF2:-0.350354962032;STAT2,4,6:-0.366805103203;HNF4A_NR2F1,2:-0.377934581337;RREB1:-0.387156852635;EN1,2:-0.39715489642;GATA6:-0.39864535783;PATZ1:-0.403761331019;IRF7:-0.406912380548;POU5F1:-0.432149863515;NRF1:-0.436441792028;FOXA2:-0.440677669753;EP300:-0.442633493386;FOXD3:-0.448605674075;NHLH1,2:-0.470648832709;JUN:-0.47917249094;OCT4_SOX2{dimer}:-0.482140630461;PRDM1:-0.489050277313;MYB:-0.501164059897;RORA:-0.505660581084;NR1H4:-0.51355535949;ATF5_CREB3:-0.518003152693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544513028629;ATF6:-0.546703760701;MYFfamily:-0.55191407975;MZF1:-0.553657787694;AHR_ARNT_ARNT2:-0.565399624645;FOXP1:-0.601661184974;CDX1,2,4:-0.601740132685;XBP1:-0.602112507807;SPIB:-0.607132199423;NKX6-1,2:-0.619874467092;BREu{core}:-0.640153612755;STAT1,3:-0.640551890018;PDX1:-0.657128214859;PAX6:-0.662257196146;ALX1:-0.671329101274;NFE2L2:-0.671708307379;ZNF384:-0.700627187758;HOX{A5,B5}:-0.714775612604;RUNX1..3:-0.716572527658;GATA4:-0.733911087092;CUX2:-0.734108669769;YY1:-0.743614743482;SRF:-0.749590506698;NFY{A,B,C}:-0.776653837463;BPTF:-0.789027093808;RFX1:-0.795370062428;PAX3,7:-0.809279279279;E2F1..5:-0.811704470146;RFX2..5_RFXANK_RFXAP:-0.819338454971;HES1:-0.835794157812;FOXP3:-0.840622918924;ESRRA:-0.854812718351;DMAP1_NCOR{1,2}_SMARC:-0.884932460713;FOX{D1,D2}:-0.886491733289;NFE2L1:-0.897176308994;SOX{8,9,10}:-0.898302111744;MEF2{A,B,C,D}:-0.903316903073;IKZF2:-0.932103851613;NFATC1..3:-0.972601077022;GCM1,2:-0.97629880824;IRF1,2:-0.977181352791;PRRX1,2:-0.996471820782;HOXA9_MEIS1:-1.08564021453;SREBF1,2:-1.09929954968;GFI1:-1.12868239879;DBP:-1.13751551923;TGIF1:-1.18357824658;HBP1_HMGB_SSRP1_UBTF:-1.19001772331;PBX1:-1.20448475469;FOX{I1,J2}:-1.2589163847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2720935329;SOX5:-1.29094861694;TAL1_TCF{3,4,12}:-1.35887373674
|top_motifs=TP53:2.55845924808;TBX4,5:2.32894301797;PPARG:1.96964636673;ZEB1:1.88524599164;TEF:1.72845182751;HIF1A:1.52498732462;VSX1,2:1.43623527952;ONECUT1,2:1.40354248059;T:1.38759646471;SNAI1..3:1.35552468063;TFCP2:1.0845906586;TEAD1:1.06060866472;ADNP_IRX_SIX_ZHX:1.02082167568;PAX1,9:1.00918831884;XCPE1{core}:0.995964864099;TFAP2{A,C}:0.964302422492;ARID5B:0.940036072349;ZNF148:0.894065897043;MTF1:0.841723446542;MYOD1:0.838819319216;UFEwm:0.798806993454;NKX2-1,4:0.679858353924;GLI1..3:0.64752556863;POU6F1:0.611332199802;ELK1,4_GABP{A,B1}:0.60986097406;TFAP2B:0.593757615412;TLX2:0.57974938406;MAZ:0.556693755016;FOXQ1:0.526265908535;TFDP1:0.504634358708;SP1:0.503311479673;bHLH_family:0.502808240656;SOX17:0.502587571677;HLF:0.502246944309;NKX2-2,8:0.486995093658;LMO2:0.459926876673;CEBPA,B_DDIT3:0.439767522912;FOS_FOS{B,L1}_JUN{B,D}:0.426948964506;GZF1:0.425128465814;NKX2-3_NKX2-5:0.424398149109;NKX3-2:0.379995638156;EGR1..3:0.369374449862;TFAP4:0.337396402833;PAX4:0.32668362122;HAND1,2:0.317943430195;TOPORS:0.317408567326;MED-1{core}:0.304834815113;POU1F1:0.29882950457;PAX5:0.285315394798;HOX{A4,D4}:0.284549622623;NR5A1,2:0.267884143957;HMGA1,2:0.23997288168;KLF4:0.2379831007;FOSL2:0.220380057953;BACH2:0.219084600269;GTF2A1,2:0.198929399965;IKZF1:0.198568267126;HIC1:0.192701012338;HOX{A6,A7,B6,B7}:0.192370308594;FOXM1:0.190865279692;SPZ1:0.186092677121;TBP:0.181036624669;ZBTB6:0.179241398214;FOXN1:0.178773080894;AR:0.178474730932;ZNF423:0.173994861238;EVI1:0.172489975151;NKX3-1:0.167992436405;POU3F1..4:0.154564464968;PITX1..3:0.152402129955;PAX2:0.138060385564;RXR{A,B,G}:0.13270825572;EBF1:0.118414445613;NR3C1:0.112947427615;FOXL1:0.0975912626394;STAT5{A,B}:0.0872603710065;ATF4:0.0843080002864;MTE{core}:0.0691329045781;NFIL3:0.0664223092409;HMX1:0.0372568910081;ESR1:0.0358343943832;RXRA_VDR{dimer}:0.0308259741694;ZFP161:0.0238741252562;POU2F1..3:0.0116657388883;NFIX:0.0033497568876;SMAD1..7,9:-0.0200867252844;NR6A1:-0.0204551404248;ZIC1..3:-0.0222159784273;HSF1,2:-0.0329350130691;CRX:-0.0584149218673;CDC5L:-0.0806409651599;AIRE:-0.0852658860024;REST:-0.0856907844688;ALX4:-0.0951874883619;ZNF238:-0.0956029816743;ZBTB16:-0.104483991044;FOX{F1,F2,J1}:-0.107577856242;RBPJ:-0.124706807535;GFI1B:-0.131985728738;FOXO1,3,4:-0.136656466688;ZNF143:-0.13879871104;MYBL2:-0.168046102955;NFE2:-0.172204366111;NFKB1_REL_RELA:-0.183253834471;TLX1..3_NFIC{dimer}:-0.189073661772;NANOG{mouse}:-0.196753741204;HNF1A:-0.199161041023;MAFB:-0.203651591618;GTF2I:-0.212826126407;ELF1,2,4:-0.229281109027;CREB1:-0.239558092106;PAX8:-0.264952163559;LHX3,4:-0.299284632254;SPI1:-0.304572305753;ETS1,2:-0.318907942073;LEF1_TCF7_TCF7L1,2:-0.325886595919;SOX2:-0.326322826384;NANOG:-0.344758647285;ATF2:-0.350354962032;STAT2,4,6:-0.366805103203;HNF4A_NR2F1,2:-0.377934581337;RREB1:-0.387156852635;EN1,2:-0.39715489642;GATA6:-0.39864535783;PATZ1:-0.403761331019;IRF7:-0.406912380548;POU5F1:-0.432149863515;NRF1:-0.436441792028;FOXA2:-0.440677669753;EP300:-0.442633493386;FOXD3:-0.448605674075;NHLH1,2:-0.470648832709;JUN:-0.47917249094;OCT4_SOX2{dimer}:-0.482140630461;PRDM1:-0.489050277313;MYB:-0.501164059897;RORA:-0.505660581084;NR1H4:-0.51355535949;ATF5_CREB3:-0.518003152693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544513028629;ATF6:-0.546703760701;MYFfamily:-0.55191407975;MZF1:-0.553657787694;AHR_ARNT_ARNT2:-0.565399624645;FOXP1:-0.601661184974;CDX1,2,4:-0.601740132685;XBP1:-0.602112507807;SPIB:-0.607132199423;NKX6-1,2:-0.619874467092;BREu{core}:-0.640153612755;STAT1,3:-0.640551890018;PDX1:-0.657128214859;PAX6:-0.662257196146;ALX1:-0.671329101274;NFE2L2:-0.671708307379;ZNF384:-0.700627187758;HOX{A5,B5}:-0.714775612604;RUNX1..3:-0.716572527658;GATA4:-0.733911087092;CUX2:-0.734108669769;YY1:-0.743614743482;SRF:-0.749590506698;NFY{A,B,C}:-0.776653837463;BPTF:-0.789027093808;RFX1:-0.795370062428;PAX3,7:-0.809279279279;E2F1..5:-0.811704470146;RFX2..5_RFXANK_RFXAP:-0.819338454971;HES1:-0.835794157812;FOXP3:-0.840622918924;ESRRA:-0.854812718351;DMAP1_NCOR{1,2}_SMARC:-0.884932460713;FOX{D1,D2}:-0.886491733289;NFE2L1:-0.897176308994;SOX{8,9,10}:-0.898302111744;MEF2{A,B,C,D}:-0.903316903073;IKZF2:-0.932103851613;NFATC1..3:-0.972601077022;GCM1,2:-0.97629880824;IRF1,2:-0.977181352791;PRRX1,2:-0.996471820782;HOXA9_MEIS1:-1.08564021453;SREBF1,2:-1.09929954968;GFI1:-1.12868239879;DBP:-1.13751551923;TGIF1:-1.18357824658;HBP1_HMGB_SSRP1_UBTF:-1.19001772331;PBX1:-1.20448475469;FOX{I1,J2}:-1.2589163847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2720935329;SOX5:-1.29094861694;TAL1_TCF{3,4,12}:-1.35887373674
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11334-117F2;search_select_hide=table117:FF:11334-117F2
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Small Airway Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11975
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage58 years old adult
sexmale
age58
cell typepneumocyte
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004717
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11975 CAGE DRX008465 DRR009337
Accession ID Hg19

Library idBAMCTSS
CNhs11975 DRZ000762 DRZ002147
Accession ID Hg38

Library idBAMCTSS
CNhs11975 DRZ012112 DRZ013497
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004717
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GAGTGG sRNA-Seq DRX037088 DRR041454
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GAGTGG DRZ007096


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0666
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.233
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.404
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.141
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0436
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0604
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.141
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.24
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.333
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.325
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.059
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.15
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.749
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.312
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.41
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.404
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.589
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11975

Jaspar motifP-value
MA0002.20.0143
MA0003.10.75
MA0004.10.185
MA0006.10.0134
MA0007.10.409
MA0009.10.184
MA0014.10.499
MA0017.10.531
MA0018.20.0312
MA0019.10.913
MA0024.13.61734e-5
MA0025.10.601
MA0027.10.555
MA0028.10.0747
MA0029.10.0524
MA0030.10.855
MA0031.10.636
MA0035.20.512
MA0038.14.50989e-4
MA0039.20.0596
MA0040.10.377
MA0041.10.535
MA0042.10.232
MA0043.10.456
MA0046.10.888
MA0047.20.204
MA0048.10.594
MA0050.14.50827e-9
MA0051.11.64954e-6
MA0052.10.00152
MA0055.10.0465
MA0057.10.155
MA0058.10.0214
MA0059.10.661
MA0060.12.43706e-6
MA0061.10.0322
MA0062.20.67
MA0065.20.746
MA0066.10.774
MA0067.10.057
MA0068.10.093
MA0069.10.214
MA0070.10.242
MA0071.10.199
MA0072.10.36
MA0073.10.843
MA0074.10.771
MA0076.10.473
MA0077.10.377
MA0078.10.907
MA0079.20.0921
MA0080.22.89197e-5
MA0081.10.0146
MA0083.10.0895
MA0084.10.182
MA0087.10.76
MA0088.10.129
MA0090.10.00226
MA0091.10.21
MA0092.10.35
MA0093.10.113
MA0099.20.0651
MA0100.10.0252
MA0101.10.128
MA0102.20.941
MA0103.11.10443e-7
MA0104.20.0481
MA0105.10.0027
MA0106.11.281e-10
MA0107.10.0878
MA0108.20.709
MA0111.10.753
MA0112.20.334
MA0113.10.971
MA0114.10.286
MA0115.10.975
MA0116.10.0339
MA0117.10.193
MA0119.10.824
MA0122.10.312
MA0124.10.28
MA0125.10.143
MA0131.10.98
MA0135.10.725
MA0136.10.00267
MA0137.20.00348
MA0138.20.995
MA0139.10.478
MA0140.10.415
MA0141.10.743
MA0142.10.369
MA0143.10.917
MA0144.10.444
MA0145.10.0402
MA0146.10.368
MA0147.10.0802
MA0148.10.144
MA0149.10.178
MA0150.10.172
MA0152.10.321
MA0153.10.43
MA0154.10.155
MA0155.10.433
MA0156.10.126
MA0157.10.185
MA0159.10.766
MA0160.10.599
MA0162.10.468
MA0163.10.00723
MA0164.10.992
MA0258.10.186
MA0259.10.999



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11975

Novel motifP-value
10.418
100.0818
1000.599
1010.0213
1020.324
1030.301
1040.858
1050.77
1060.0412
1070.0947
1080.0786
1090.0966
110.906
1100.961
1110.441
1120.724
1130.999
1140.761
1150.305
1160.634
1170.973
1180.607
1190.774
120.596
1200.077
1210.685
1220.537
1230.671
1240.0105
1250.741
1260.862
1270.584
1280.817
1290.59
130.721
1300.172
1310.896
1320.273
1335.19342e-4
1340.092
1350.72
1368.81196e-4
1370.003
1380.732
1390.665
140.757
1400.248
1410.442
1420.379
1430.166
1440.0797
1450.549
1460.191
1470.101
1480.0598
1490.822
150.214
1500.222
1510.284
1528.28033e-4
1530.505
1540.973
1550.654
1560.897
1570.253
1580.0714
1590.772
160.0665
1600.1
1610.524
1620.692
1630.567
1640.428
1650.891
1660.688
1670.366
1680.614
1690.465
170.46
180.293
190.459
20.369
200.552
210.897
220.948
230.425
240.201
250.31
260.84
270.786
280.86
290.721
30.541
300.174
310.984
320.788
330.489
340.523
350.0152
360.0433
370.633
380.944
390.505
40.689
400.885
410.153
420.459
430.324
440.64
450.211
460.773
470.784
480.793
490.0104
50.364
500.708
510.621
520.148
530.0403
540.888
550.609
560.795
570.775
580.349
590.421
60.0696
600.286
610.972
620.185
630.595
640.721
650.964
660.715
670.66
680.439
690.678
70.651
700.04
710.132
720.634
736.23061e-4
740.00891
750.807
760.313
770.409
780.108
790.246
80.927
800.121
810.114
820.232
830.264
840.445
850.538
860.868
870.0108
880.661
890.297
90.226
900.309
910.447
920.457
930.373
940.296
950.109
960.248
970.713
980.194
990.107



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11975


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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