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(Created page with "{{f5samples |id=FF:11334-117F2 |name=Small Airway Epithelial Cells, donor2 |sample_id=11334 |rna_tube_id=117F2 |rna_box=117 |rna_position=F2 |sample_cell_lot=lot:5F0380...")
 
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{{f5samples
{{f5samples
|id=FF:11334-117F2
|DRA_sample_Accession=CAGE@SAMD00004717
|name=Small Airway Epithelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004717
|sample_id=11334
|accession_numbers=CAGE;DRX008465;DRR009337;DRZ000762;DRZ002147;DRZ012112;DRZ013497
|rna_tube_id=117F2
|accession_numbers_RNASeq=sRNA-Seq;DRX037088;DRR041454;DRZ007096
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000065,UBERON:0001004
|rna_position=F2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002368
|sample_cell_lot=lot:5F0380J
|sample_cell_catalog=CC-2547
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=58 years old adult
|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=58
|sample_ethnicity=C
|rna_rin=10.00000
|rna_od260/230=2.10000
|rna_od260/280=2.06000
|sample_cell_type=pneumocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=37.50000
|rna_concentration=1.70000
|sample_note=
|profile_hcage=CNhs11975,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10006,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000548,CL:0002076,CL:0002321,CL:0002368,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000065,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001004,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000166
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Small%2520Airway%2520Epithelial%2520Cells%252c%2520donor2.CNhs11975.11334-117F2.hg38.nobarcode.ctss.bed.gz
|id=FF:11334-117F2
|is_a=EFO:0002091;;FF:0000166
|is_obsolete=
|library_id=CNhs11975
|library_id_phase_based=2:CNhs11975
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11334
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GAGTGG.11334
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11334
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GAGTGG.11334
|name=Small Airway Epithelial Cells, donor2
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs11975,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10006,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_catalog_number=N/A
|rna_concentration=1.7
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.1
|rna_od260/280=2.06
|rna_position=F2
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=117F2
|rna_weight_ug=37.5
|rnaseq_library_id=SRhi10006.GAGTGG
|sample_age=58
|sample_category=primary cells
|sample_cell_catalog=CC-2547
|sample_cell_line=
|sample_cell_lot=lot:5F0380J
|sample_cell_type=pneumocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=58 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.80283135436011e-236!GO:0005737;cytoplasm;1.47708188377483e-194!GO:0043226;organelle;5.7250915110896e-180!GO:0043229;intracellular organelle;1.98404698922116e-179!GO:0043231;intracellular membrane-bound organelle;1.37138220627759e-165!GO:0043227;membrane-bound organelle;2.41754738440771e-165!GO:0044422;organelle part;1.85887435682777e-124!GO:0044446;intracellular organelle part;3.9991463126249e-123!GO:0044444;cytoplasmic part;5.71783860369451e-123!GO:0032991;macromolecular complex;3.61386584658369e-83!GO:0005515;protein binding;4.91732291265697e-81!GO:0044238;primary metabolic process;1.70065767833822e-80!GO:0044237;cellular metabolic process;1.05737874577634e-79!GO:0030529;ribonucleoprotein complex;2.79673516392858e-78!GO:0043170;macromolecule metabolic process;7.82821151108629e-76!GO:0003723;RNA binding;4.05873570665344e-62!GO:0005634;nucleus;5.78126173619644e-62!GO:0043233;organelle lumen;6.74642351151089e-61!GO:0031974;membrane-enclosed lumen;6.74642351151089e-61!GO:0044428;nuclear part;9.87007478269459e-58!GO:0019538;protein metabolic process;3.50335406304824e-56!GO:0005739;mitochondrion;3.57457016655195e-52!GO:0006412;translation;3.31167017925233e-50!GO:0005840;ribosome;1.12943360252078e-49!GO:0031090;organelle membrane;1.21533792072839e-49!GO:0044260;cellular macromolecule metabolic process;2.00130536674906e-49!GO:0044267;cellular protein metabolic process;2.16489671344779e-49!GO:0016043;cellular component organization and biogenesis;4.65969565425411e-47!GO:0015031;protein transport;8.66585623768878e-47!GO:0033036;macromolecule localization;1.68698488372066e-46!GO:0003735;structural constituent of ribosome;3.19761992832892e-44!GO:0008104;protein localization;3.31074505865779e-43!GO:0045184;establishment of protein localization;6.94634573072952e-43!GO:0006396;RNA processing;3.19885095008354e-42!GO:0043283;biopolymer metabolic process;1.73972596904163e-41!GO:0009058;biosynthetic process;1.40265805267158e-40!GO:0043234;protein complex;1.40322333389671e-40!GO:0005829;cytosol;3.77591784877657e-40!GO:0009059;macromolecule biosynthetic process;1.89910424235086e-39!GO:0010467;gene expression;3.88602678853902e-39!GO:0044249;cellular biosynthetic process;1.22522982908271e-38!GO:0033279;ribosomal subunit;8.84968127287249e-38!GO:0031981;nuclear lumen;1.87716421030282e-37!GO:0046907;intracellular transport;4.5067818937687e-36!GO:0044429;mitochondrial part;6.1324110375386e-35!GO:0043228;non-membrane-bound organelle;1.0882229936732e-33!GO:0043232;intracellular non-membrane-bound organelle;1.0882229936732e-33!GO:0031967;organelle envelope;9.03626517227601e-33!GO:0016071;mRNA metabolic process;9.3985885911967e-33!GO:0031975;envelope;2.04691968413881e-32!GO:0065003;macromolecular complex assembly;4.16053568390819e-32!GO:0008380;RNA splicing;4.08700944352773e-31!GO:0006886;intracellular protein transport;4.19713919796187e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.91036547355159e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.77633387414036e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.60797025866924e-29!GO:0022607;cellular component assembly;2.3454110692659e-28!GO:0006996;organelle organization and biogenesis;2.54554332425552e-28!GO:0006397;mRNA processing;1.49405935137533e-27!GO:0044445;cytosolic part;6.49323072041141e-24!GO:0012505;endomembrane system;1.4898291784745e-23!GO:0005740;mitochondrial envelope;3.61529826508005e-23!GO:0051649;establishment of cellular localization;9.28947329725237e-23!GO:0051641;cellular localization;1.09088892947426e-22!GO:0005654;nucleoplasm;4.83485859067974e-22!GO:0005681;spliceosome;6.73902093544337e-22!GO:0031966;mitochondrial membrane;2.13494926673452e-21!GO:0019866;organelle inner membrane;3.2408393908613e-20!GO:0005783;endoplasmic reticulum;1.00442758209655e-19!GO:0005794;Golgi apparatus;1.12181521528276e-19!GO:0015935;small ribosomal subunit;2.02123747867411e-19!GO:0015934;large ribosomal subunit;2.48999583933394e-19!GO:0006457;protein folding;3.34388230467067e-19!GO:0005743;mitochondrial inner membrane;8.5053218977101e-19!GO:0006119;oxidative phosphorylation;1.03841118274154e-18!GO:0022618;protein-RNA complex assembly;1.61859852068492e-18!GO:0000166;nucleotide binding;2.0863274706023e-18!GO:0005730;nucleolus;4.82778604095639e-18!GO:0016874;ligase activity;4.90250716099164e-18!GO:0048770;pigment granule;4.95180241749254e-18!GO:0042470;melanosome;4.95180241749254e-18!GO:0006512;ubiquitin cycle;5.77104498275492e-18!GO:0043285;biopolymer catabolic process;7.54375688739773e-18!GO:0044451;nucleoplasm part;1.08845730994985e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.16507973415107e-17!GO:0016462;pyrophosphatase activity;1.3794425672944e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42629161695921e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.97412656576053e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.112767713116e-17!GO:0019941;modification-dependent protein catabolic process;2.13899323527835e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.13899323527835e-17!GO:0044257;cellular protein catabolic process;3.08993351210176e-17!GO:0008134;transcription factor binding;4.37577239573985e-17!GO:0044455;mitochondrial membrane part;4.59703618084677e-17!GO:0017111;nucleoside-triphosphatase activity;5.16397971333645e-17!GO:0016070;RNA metabolic process;1.50749336336738e-16!GO:0044265;cellular macromolecule catabolic process;1.90177840181162e-16!GO:0043412;biopolymer modification;1.93506149892385e-16!GO:0003676;nucleic acid binding;2.19670485328105e-16!GO:0030163;protein catabolic process;2.52179682890717e-16!GO:0006605;protein targeting;3.0066868235161e-16!GO:0044432;endoplasmic reticulum part;3.22851352964462e-16!GO:0012501;programmed cell death;3.87675516344293e-16!GO:0006915;apoptosis;1.15817619649699e-15!GO:0006259;DNA metabolic process;1.22986394849237e-15!GO:0006464;protein modification process;1.69339451469788e-15!GO:0009057;macromolecule catabolic process;1.72344289335869e-15!GO:0048193;Golgi vesicle transport;5.34983716120767e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.69536451254319e-15!GO:0008135;translation factor activity, nucleic acid binding;8.53239086815628e-15!GO:0016192;vesicle-mediated transport;1.65251314414419e-14!GO:0031980;mitochondrial lumen;1.73208002612631e-14!GO:0005759;mitochondrial matrix;1.73208002612631e-14!GO:0008219;cell death;2.85034656647317e-14!GO:0016265;death;2.85034656647317e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.07959212718175e-14!GO:0051082;unfolded protein binding;1.27385422389083e-13!GO:0007049;cell cycle;1.56694853048037e-13!GO:0005746;mitochondrial respiratory chain;1.57865049222655e-13!GO:0043687;post-translational protein modification;2.17697949537994e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.36376890232967e-13!GO:0032553;ribonucleotide binding;3.64526719976733e-13!GO:0032555;purine ribonucleotide binding;3.64526719976733e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.03008624781192e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.06905528589534e-12!GO:0003954;NADH dehydrogenase activity;1.06905528589534e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.06905528589534e-12!GO:0017076;purine nucleotide binding;1.12680616199867e-12!GO:0051186;cofactor metabolic process;1.4724195025172e-12!GO:0005761;mitochondrial ribosome;1.61766414252325e-12!GO:0000313;organellar ribosome;1.61766414252325e-12!GO:0006413;translational initiation;2.60624294954988e-12!GO:0044248;cellular catabolic process;2.83149952951269e-12!GO:0003743;translation initiation factor activity;3.52181193034499e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.63597966426947e-12!GO:0005789;endoplasmic reticulum membrane;6.74077754732078e-12!GO:0042254;ribosome biogenesis and assembly;8.79449382252343e-12!GO:0048523;negative regulation of cellular process;1.00257571367383e-11!GO:0006461;protein complex assembly;1.71513117346736e-11!GO:0008565;protein transporter activity;3.83858285876599e-11!GO:0006446;regulation of translational initiation;3.97355851066373e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.44481160310184e-11!GO:0000375;RNA splicing, via transesterification reactions;4.44481160310184e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.44481160310184e-11!GO:0043067;regulation of programmed cell death;6.34498891623159e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.34498891623159e-11!GO:0042773;ATP synthesis coupled electron transport;6.34498891623159e-11!GO:0006732;coenzyme metabolic process;8.33133060489714e-11!GO:0030964;NADH dehydrogenase complex (quinone);8.84376152732099e-11!GO:0045271;respiratory chain complex I;8.84376152732099e-11!GO:0005747;mitochondrial respiratory chain complex I;8.84376152732099e-11!GO:0042981;regulation of apoptosis;9.07997596951875e-11!GO:0003712;transcription cofactor activity;1.15066967342778e-10!GO:0006913;nucleocytoplasmic transport;1.19375868064603e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.41371268289038e-10!GO:0016604;nuclear body;1.80320317834014e-10!GO:0008639;small protein conjugating enzyme activity;1.80320317834014e-10!GO:0005635;nuclear envelope;1.91999928204303e-10!GO:0051169;nuclear transport;2.42658463891375e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.50017928994066e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.48178131459943e-10!GO:0048519;negative regulation of biological process;3.69052223320239e-10!GO:0004842;ubiquitin-protein ligase activity;3.69052223320239e-10!GO:0050794;regulation of cellular process;4.88865887477543e-10!GO:0006366;transcription from RNA polymerase II promoter;5.61377699343337e-10!GO:0005524;ATP binding;5.64162876917598e-10!GO:0044431;Golgi apparatus part;6.24603361713246e-10!GO:0019787;small conjugating protein ligase activity;7.81970559106495e-10!GO:0005793;ER-Golgi intermediate compartment;9.96365888549072e-10!GO:0032559;adenyl ribonucleotide binding;1.10393417507064e-09!GO:0005768;endosome;1.38131273457474e-09!GO:0051246;regulation of protein metabolic process;1.7381293226244e-09!GO:0009055;electron carrier activity;2.15873655498937e-09!GO:0031965;nuclear membrane;3.26858647182504e-09!GO:0030554;adenyl nucleotide binding;4.03724746865342e-09!GO:0016881;acid-amino acid ligase activity;4.09019461906618e-09!GO:0003924;GTPase activity;4.54947928272866e-09!GO:0016607;nuclear speck;4.8920862038503e-09!GO:0017038;protein import;5.80533072348207e-09!GO:0022402;cell cycle process;6.16705519881469e-09!GO:0006399;tRNA metabolic process;7.12108965720121e-09!GO:0048475;coated membrane;8.89833609797341e-09!GO:0030117;membrane coat;8.89833609797341e-09!GO:0030120;vesicle coat;1.13710265285771e-08!GO:0030662;coated vesicle membrane;1.13710265285771e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.19673429666278e-08!GO:0044453;nuclear membrane part;1.60538270514093e-08!GO:0043069;negative regulation of programmed cell death;2.0242871174252e-08!GO:0006974;response to DNA damage stimulus;3.25373635444307e-08!GO:0000074;regulation of progression through cell cycle;3.87518310004982e-08!GO:0009056;catabolic process;4.14983774190434e-08!GO:0006323;DNA packaging;4.52075178966764e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.52218879353938e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.52218879353938e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.52218879353938e-08!GO:0000139;Golgi membrane;5.01937466073561e-08!GO:0051726;regulation of cell cycle;5.13123363280674e-08!GO:0043066;negative regulation of apoptosis;5.9250824258535e-08!GO:0009259;ribonucleotide metabolic process;8.33231187845161e-08!GO:0051188;cofactor biosynthetic process;9.1372019834992e-08!GO:0006163;purine nucleotide metabolic process;1.04226294406316e-07!GO:0051276;chromosome organization and biogenesis;1.11538190450477e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.33052821948883e-07!GO:0009150;purine ribonucleotide metabolic process;1.5577841565248e-07!GO:0006916;anti-apoptosis;1.63473082749635e-07!GO:0007005;mitochondrion organization and biogenesis;1.65077565536735e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.67619036308595e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.67619036308595e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.67619036308595e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.7225239588638e-07!GO:0009141;nucleoside triphosphate metabolic process;2.10780184988753e-07!GO:0016887;ATPase activity;2.12244400819228e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.18918874005809e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.18918874005809e-07!GO:0006164;purine nucleotide biosynthetic process;2.71353322606473e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.74421031874252e-07!GO:0016072;rRNA metabolic process;2.83618429801731e-07!GO:0005643;nuclear pore;2.88846958949379e-07!GO:0006364;rRNA processing;2.91108532209038e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.97754866996625e-07!GO:0015986;ATP synthesis coupled proton transport;3.03439814831713e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.03439814831713e-07!GO:0032446;protein modification by small protein conjugation;3.1762260692136e-07!GO:0043038;amino acid activation;3.20672797623913e-07!GO:0006418;tRNA aminoacylation for protein translation;3.20672797623913e-07!GO:0043039;tRNA aminoacylation;3.20672797623913e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.53525891277142e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.53525891277142e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.70403862439156e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.79007033341884e-07!GO:0009260;ribonucleotide biosynthetic process;4.14705294665958e-07!GO:0031988;membrane-bound vesicle;4.21653604180475e-07!GO:0042623;ATPase activity, coupled;4.21653604180475e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.25913263436904e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.25913263436904e-07!GO:0016567;protein ubiquitination;4.53123445645093e-07!GO:0000278;mitotic cell cycle;4.59313946467314e-07!GO:0006793;phosphorus metabolic process;4.82329372493415e-07!GO:0006796;phosphate metabolic process;4.82329372493415e-07!GO:0065002;intracellular protein transport across a membrane;6.34391204924775e-07!GO:0003714;transcription corepressor activity;6.5490046785917e-07!GO:0004386;helicase activity;7.68585416179841e-07!GO:0030532;small nuclear ribonucleoprotein complex;7.80148609107935e-07!GO:0008026;ATP-dependent helicase activity;1.0305589348711e-06!GO:0009108;coenzyme biosynthetic process;1.16092774266481e-06!GO:0051170;nuclear import;1.24898466909443e-06!GO:0019829;cation-transporting ATPase activity;1.43502447488553e-06!GO:0050789;regulation of biological process;1.57103744774589e-06!GO:0016564;transcription repressor activity;1.79949367692976e-06!GO:0006606;protein import into nucleus;2.71863447894466e-06!GO:0043623;cellular protein complex assembly;2.94331425861959e-06!GO:0006403;RNA localization;3.08452872293782e-06!GO:0031982;vesicle;3.19294842830038e-06!GO:0006754;ATP biosynthetic process;3.25875767149396e-06!GO:0006753;nucleoside phosphate metabolic process;3.25875767149396e-06!GO:0005525;GTP binding;3.2959017943187e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.30144187674628e-06!GO:0050657;nucleic acid transport;3.41865867492443e-06!GO:0051236;establishment of RNA localization;3.41865867492443e-06!GO:0050658;RNA transport;3.41865867492443e-06!GO:0048522;positive regulation of cellular process;3.92016271421502e-06!GO:0031410;cytoplasmic vesicle;4.44760858037867e-06!GO:0007243;protein kinase cascade;4.49270143977067e-06!GO:0031252;leading edge;4.53663196356103e-06!GO:0046034;ATP metabolic process;4.62361470025417e-06!GO:0006281;DNA repair;4.81894217271022e-06!GO:0009719;response to endogenous stimulus;4.99327510643352e-06!GO:0031324;negative regulation of cellular metabolic process;5.69126288541656e-06!GO:0006752;group transfer coenzyme metabolic process;6.55097467409403e-06!GO:0005798;Golgi-associated vesicle;6.92015471700482e-06!GO:0046930;pore complex;7.0602627723695e-06!GO:0005770;late endosome;7.21481424826561e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.36174875704793e-06!GO:0016740;transferase activity;7.66644540059922e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.12628610272162e-06!GO:0045259;proton-transporting ATP synthase complex;1.01868670501399e-05!GO:0016310;phosphorylation;1.04226135403823e-05!GO:0044440;endosomal part;1.04226135403823e-05!GO:0010008;endosome membrane;1.04226135403823e-05!GO:0005788;endoplasmic reticulum lumen;1.09678444435804e-05!GO:0000245;spliceosome assembly;1.28091762076138e-05!GO:0005773;vacuole;1.38966440062513e-05!GO:0009060;aerobic respiration;1.39792043287167e-05!GO:0006333;chromatin assembly or disassembly;1.40794767734164e-05!GO:0005694;chromosome;1.50877544031592e-05!GO:0000785;chromatin;1.53154897160352e-05!GO:0045786;negative regulation of progression through cell cycle;1.53322264149918e-05!GO:0065004;protein-DNA complex assembly;1.53840126976055e-05!GO:0045454;cell redox homeostasis;1.55039225413718e-05!GO:0006613;cotranslational protein targeting to membrane;1.70762254454585e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.70862337823693e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.06969824319251e-05!GO:0009967;positive regulation of signal transduction;2.07615465601651e-05!GO:0009892;negative regulation of metabolic process;2.14328325138269e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.6673665401626e-05!GO:0016568;chromatin modification;3.29710095025042e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.7210737095636e-05!GO:0045333;cellular respiration;3.97505161341367e-05!GO:0019899;enzyme binding;4.74352041138424e-05!GO:0005762;mitochondrial large ribosomal subunit;4.79164620539407e-05!GO:0000315;organellar large ribosomal subunit;4.79164620539407e-05!GO:0032561;guanyl ribonucleotide binding;5.14557166822369e-05!GO:0019001;guanyl nucleotide binding;5.14557166822369e-05!GO:0008092;cytoskeletal protein binding;5.2749378641439e-05!GO:0000151;ubiquitin ligase complex;5.43490791710882e-05!GO:0003724;RNA helicase activity;5.70367467655287e-05!GO:0019222;regulation of metabolic process;5.70367467655287e-05!GO:0009117;nucleotide metabolic process;5.89909481827968e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.47430132996545e-05!GO:0051028;mRNA transport;7.07489259466935e-05!GO:0051427;hormone receptor binding;7.6817122504201e-05!GO:0044427;chromosomal part;8.14815339976214e-05!GO:0042802;identical protein binding;8.34457807150962e-05!GO:0000323;lytic vacuole;8.57896612709319e-05!GO:0005764;lysosome;8.57896612709319e-05!GO:0016787;hydrolase activity;8.71545088821554e-05!GO:0019843;rRNA binding;8.97908673694844e-05!GO:0048471;perinuclear region of cytoplasm;9.15949488290214e-05!GO:0005839;proteasome core complex (sensu Eukaryota);9.15949488290214e-05!GO:0030029;actin filament-based process;0.000101913440984452!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000106031816572153!GO:0003713;transcription coactivator activity;0.000107313563032109!GO:0005769;early endosome;0.000110099880553762!GO:0016853;isomerase activity;0.000113760808600666!GO:0030118;clathrin coat;0.000115684438390681!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000116919338178147!GO:0005667;transcription factor complex;0.000118039353955515!GO:0016859;cis-trans isomerase activity;0.000120458454893567!GO:0016481;negative regulation of transcription;0.000124658816133745!GO:0003697;single-stranded DNA binding;0.000136588544276898!GO:0005905;coated pit;0.000143421287804006!GO:0035257;nuclear hormone receptor binding;0.000145489977612324!GO:0030867;rough endoplasmic reticulum membrane;0.000151400448979929!GO:0048468;cell development;0.000158979670399098!GO:0016044;membrane organization and biogenesis;0.000163892544760307!GO:0043566;structure-specific DNA binding;0.000164150312244153!GO:0015630;microtubule cytoskeleton;0.00016938642462036!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000177908153873352!GO:0008654;phospholipid biosynthetic process;0.000184823807160273!GO:0007264;small GTPase mediated signal transduction;0.000187238589804087!GO:0007010;cytoskeleton organization and biogenesis;0.000191548174478922!GO:0016563;transcription activator activity;0.000204465636947836!GO:0043021;ribonucleoprotein binding;0.000214746154738435!GO:0051187;cofactor catabolic process;0.00024033123061619!GO:0031072;heat shock protein binding;0.000242613815944531!GO:0000087;M phase of mitotic cell cycle;0.000244998313216338!GO:0006099;tricarboxylic acid cycle;0.000244998313216338!GO:0046356;acetyl-CoA catabolic process;0.000244998313216338!GO:0048518;positive regulation of biological process;0.000260817209912494!GO:0006260;DNA replication;0.000294202648108208!GO:0005813;centrosome;0.000306557176247581!GO:0033116;ER-Golgi intermediate compartment membrane;0.000312377028262733!GO:0007067;mitosis;0.000341002500802957!GO:0009109;coenzyme catabolic process;0.000354571523927294!GO:0016491;oxidoreductase activity;0.000364521710529043!GO:0004298;threonine endopeptidase activity;0.000374196692421885!GO:0005048;signal sequence binding;0.000374530252637173!GO:0005885;Arp2/3 protein complex;0.000377345198531326!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000398847367835577!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000402337972336611!GO:0031968;organelle outer membrane;0.00042134393853209!GO:0019867;outer membrane;0.000424855162951443!GO:0065009;regulation of a molecular function;0.00047941835735539!GO:0030658;transport vesicle membrane;0.000481950816705203!GO:0016197;endosome transport;0.000487997360653682!GO:0008250;oligosaccharyl transferase complex;0.000494008474252222!GO:0016779;nucleotidyltransferase activity;0.000494718691392184!GO:0005741;mitochondrial outer membrane;0.000500141750431678!GO:0051789;response to protein stimulus;0.000509339969749039!GO:0006986;response to unfolded protein;0.000509339969749039!GO:0045893;positive regulation of transcription, DNA-dependent;0.000518731397524896!GO:0000314;organellar small ribosomal subunit;0.000529255686025484!GO:0005763;mitochondrial small ribosomal subunit;0.000529255686025484!GO:0043065;positive regulation of apoptosis;0.000548463381975867!GO:0006084;acetyl-CoA metabolic process;0.000559738671796283!GO:0030132;clathrin coat of coated pit;0.000634549014338524!GO:0043068;positive regulation of programmed cell death;0.000638890746265271!GO:0006334;nucleosome assembly;0.000652245851779278!GO:0004576;oligosaccharyl transferase activity;0.000652526021023727!GO:0001726;ruffle;0.00065390650200069!GO:0006612;protein targeting to membrane;0.000654691739460308!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000679068027450698!GO:0022403;cell cycle phase;0.000696644705874537!GO:0007006;mitochondrial membrane organization and biogenesis;0.000739113505659466!GO:0030119;AP-type membrane coat adaptor complex;0.000857579407119879!GO:0006626;protein targeting to mitochondrion;0.000868165488607306!GO:0005815;microtubule organizing center;0.000872944096580693!GO:0045941;positive regulation of transcription;0.000912570166915843!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000956632153968299!GO:0006402;mRNA catabolic process;0.000981071995407534!GO:0065007;biological regulation;0.00101421009995902!GO:0051252;regulation of RNA metabolic process;0.00101895840450072!GO:0018196;peptidyl-asparagine modification;0.00104643948980768!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00104643948980768!GO:0051301;cell division;0.00108659888755567!GO:0051168;nuclear export;0.00110526681039041!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00110526681039041!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00110705544782875!GO:0031497;chromatin assembly;0.00119295086269016!GO:0006891;intra-Golgi vesicle-mediated transport;0.00126284236795478!GO:0030660;Golgi-associated vesicle membrane;0.00133028625909334!GO:0004674;protein serine/threonine kinase activity;0.00135387683505229!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00154230480334411!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00157702422560907!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00160704213730675!GO:0030131;clathrin adaptor complex;0.00162732766362117!GO:0051128;regulation of cellular component organization and biogenesis;0.00165023931672476!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00165367113497787!GO:0051920;peroxiredoxin activity;0.00171837353643492!GO:0030133;transport vesicle;0.00172323426056261!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00172323426056261!GO:0003729;mRNA binding;0.00172571664758953!GO:0006839;mitochondrial transport;0.00173039608751708!GO:0043681;protein import into mitochondrion;0.00184203702995991!GO:0030659;cytoplasmic vesicle membrane;0.00184800939593658!GO:0008186;RNA-dependent ATPase activity;0.00185756630980975!GO:0043488;regulation of mRNA stability;0.00195662507766038!GO:0043487;regulation of RNA stability;0.00195662507766038!GO:0030663;COPI coated vesicle membrane;0.00197720851927271!GO:0030126;COPI vesicle coat;0.00197720851927271!GO:0051101;regulation of DNA binding;0.00204734589255078!GO:0003899;DNA-directed RNA polymerase activity;0.00215064848970431!GO:0008361;regulation of cell size;0.0021841289876377!GO:0030833;regulation of actin filament polymerization;0.00230405778770472!GO:0006091;generation of precursor metabolites and energy;0.0024927852658136!GO:0048500;signal recognition particle;0.00261971197231294!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00265967082066174!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00265967082066174!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00265967082066174!GO:0000049;tRNA binding;0.00267875307170268!GO:0005791;rough endoplasmic reticulum;0.00280856512486054!GO:0006979;response to oxidative stress;0.00289933461738745!GO:0008139;nuclear localization sequence binding;0.00291142209069265!GO:0030134;ER to Golgi transport vesicle;0.003025087756971!GO:0030125;clathrin vesicle coat;0.00310764290265204!GO:0030665;clathrin coated vesicle membrane;0.00310764290265204!GO:0030880;RNA polymerase complex;0.00316440885266742!GO:0016049;cell growth;0.00320330920043355!GO:0008632;apoptotic program;0.00321951699800351!GO:0044433;cytoplasmic vesicle part;0.00334731715365262!GO:0030137;COPI-coated vesicle;0.00345631864819251!GO:0000059;protein import into nucleus, docking;0.00356268707930253!GO:0006401;RNA catabolic process;0.00377364615392544!GO:0051098;regulation of binding;0.00385367449918607!GO:0030176;integral to endoplasmic reticulum membrane;0.00387231181881767!GO:0030031;cell projection biogenesis;0.00389757661115676!GO:0035258;steroid hormone receptor binding;0.00392631438109474!GO:0006417;regulation of translation;0.00394997032248826!GO:0045045;secretory pathway;0.00408051826157094!GO:0005856;cytoskeleton;0.00425742294259346!GO:0008629;induction of apoptosis by intracellular signals;0.00425742294259346!GO:0008033;tRNA processing;0.00439423338934517!GO:0017166;vinculin binding;0.00452335900201279!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00469694761123339!GO:0015399;primary active transmembrane transporter activity;0.00469694761123339!GO:0030127;COPII vesicle coat;0.00473125751561366!GO:0012507;ER to Golgi transport vesicle membrane;0.00473125751561366!GO:0004004;ATP-dependent RNA helicase activity;0.00483034172033655!GO:0015980;energy derivation by oxidation of organic compounds;0.00505245346935758!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00505590253094753!GO:0001558;regulation of cell growth;0.00518745641950586!GO:0006509;membrane protein ectodomain proteolysis;0.00563479415569955!GO:0033619;membrane protein proteolysis;0.00563479415569955!GO:0006383;transcription from RNA polymerase III promoter;0.00583724692127745!GO:0006917;induction of apoptosis;0.00596731295397197!GO:0006414;translational elongation;0.00616629637605761!GO:0031323;regulation of cellular metabolic process;0.00621616559234966!GO:0048144;fibroblast proliferation;0.00624716631682974!GO:0048145;regulation of fibroblast proliferation;0.00624716631682974!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00624716631682974!GO:0000428;DNA-directed RNA polymerase complex;0.00624716631682974!GO:0048146;positive regulation of fibroblast proliferation;0.00672121163002921!GO:0044452;nucleolar part;0.0068578646319202!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0068578646319202!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00691782459728198!GO:0030027;lamellipodium;0.00691782459728198!GO:0015631;tubulin binding;0.00697531176888306!GO:0012506;vesicle membrane;0.00753056892420576!GO:0007050;cell cycle arrest;0.00758595003747474!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00766758450250551!GO:0045047;protein targeting to ER;0.00766758450250551!GO:0005684;U2-dependent spliceosome;0.00769103868903211!GO:0016272;prefoldin complex;0.00777241281449945!GO:0003690;double-stranded DNA binding;0.00805803965375551!GO:0012502;induction of programmed cell death;0.00806508601049712!GO:0045892;negative regulation of transcription, DNA-dependent;0.00813319381188805!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.008332381114498!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.008332381114498!GO:0006354;RNA elongation;0.00878365929771763!GO:0030041;actin filament polymerization;0.00890929908670446!GO:0016363;nuclear matrix;0.00890929908670446!GO:0046489;phosphoinositide biosynthetic process;0.00891884623226648!GO:0046474;glycerophospholipid biosynthetic process;0.00907194527944962!GO:0051329;interphase of mitotic cell cycle;0.0091521919977494!GO:0003711;transcription elongation regulator activity;0.00923105173521688!GO:0046822;regulation of nucleocytoplasmic transport;0.00935886457156993!GO:0009165;nucleotide biosynthetic process;0.00948169941641892!GO:0030521;androgen receptor signaling pathway;0.00997668674290587!GO:0008312;7S RNA binding;0.0103139004710192!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0107172951865603!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0107172951865603!GO:0046467;membrane lipid biosynthetic process;0.0111522086765449!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0112552118157275!GO:0000279;M phase;0.0112924798944108!GO:0030503;regulation of cell redox homeostasis;0.011553923584846!GO:0006892;post-Golgi vesicle-mediated transport;0.0115821722566949!GO:0043022;ribosome binding;0.0122596706184788!GO:0048487;beta-tubulin binding;0.0128096850685313!GO:0005819;spindle;0.0128943141590287!GO:0016791;phosphoric monoester hydrolase activity;0.0131135233134511!GO:0031902;late endosome membrane;0.0134916045551391!GO:0016126;sterol biosynthetic process;0.0137354064244634!GO:0006611;protein export from nucleus;0.0137708732706548!GO:0032984;macromolecular complex disassembly;0.0141008107831288!GO:0008637;apoptotic mitochondrial changes;0.0141666213153982!GO:0006595;polyamine metabolic process;0.014471614504796!GO:0030032;lamellipodium biogenesis;0.0144724359702357!GO:0031529;ruffle organization and biogenesis;0.015021317961831!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0150611325930865!GO:0050681;androgen receptor binding;0.0150983729308302!GO:0050790;regulation of catalytic activity;0.015296066218354!GO:0031326;regulation of cellular biosynthetic process;0.0158316872281866!GO:0051287;NAD binding;0.0162793367344264!GO:0008610;lipid biosynthetic process;0.0166257349242754!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0166335021181743!GO:0000209;protein polyubiquitination;0.0168263087773368!GO:0005869;dynactin complex;0.0169396547613168!GO:0007265;Ras protein signal transduction;0.0169726596056393!GO:0001666;response to hypoxia;0.0172728583310557!GO:0009889;regulation of biosynthetic process;0.0174751485774908!GO:0016311;dephosphorylation;0.0177542750741286!GO:0006350;transcription;0.0181028569362117!GO:0006352;transcription initiation;0.0181054016318896!GO:0006650;glycerophospholipid metabolic process;0.0181054016318896!GO:0008234;cysteine-type peptidase activity;0.0183663289656349!GO:0032507;maintenance of cellular protein localization;0.0184238682083015!GO:0006749;glutathione metabolic process;0.0187654900603523!GO:0030384;phosphoinositide metabolic process;0.0187892991918342!GO:0043624;cellular protein complex disassembly;0.0192101031432784!GO:0008287;protein serine/threonine phosphatase complex;0.019471726331664!GO:0015992;proton transport;0.019825703378178!GO:0004721;phosphoprotein phosphatase activity;0.0200744978964067!GO:0043241;protein complex disassembly;0.0201894752878016!GO:0008154;actin polymerization and/or depolymerization;0.0204507004807286!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0207143745239931!GO:0006818;hydrogen transport;0.0210219701073803!GO:0051325;interphase;0.0213052721856568!GO:0005149;interleukin-1 receptor binding;0.0213655706330584!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0214304885718218!GO:0035035;histone acetyltransferase binding;0.0216046289429607!GO:0051272;positive regulation of cell motility;0.0220061996636221!GO:0040017;positive regulation of locomotion;0.0220061996636221!GO:0031625;ubiquitin protein ligase binding;0.0220337841068299!GO:0051087;chaperone binding;0.0221185184069811!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0227701721994047!GO:0033043;regulation of organelle organization and biogenesis;0.0227701721994047!GO:0006984;ER-nuclear signaling pathway;0.0232209467005058!GO:0030433;ER-associated protein catabolic process;0.0232209467005058!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0232209467005058!GO:0009893;positive regulation of metabolic process;0.0233802697419224!GO:0007242;intracellular signaling cascade;0.0240402138308522!GO:0045926;negative regulation of growth;0.024491139888454!GO:0005832;chaperonin-containing T-complex;0.0246355030985364!GO:0030308;negative regulation of cell growth;0.0247094073520896!GO:0043492;ATPase activity, coupled to movement of substances;0.0249527247860392!GO:0045792;negative regulation of cell size;0.0250145279150764!GO:0007030;Golgi organization and biogenesis;0.0258496487885276!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0258644455275844!GO:0051338;regulation of transferase activity;0.025888687314708!GO:0006950;response to stress;0.0259034849908365!GO:0010468;regulation of gene expression;0.0259034849908365!GO:0046483;heterocycle metabolic process;0.0268244725626717!GO:0009116;nucleoside metabolic process;0.0270530757760078!GO:0000096;sulfur amino acid metabolic process;0.0275562726528015!GO:0003684;damaged DNA binding;0.0275562726528015!GO:0005637;nuclear inner membrane;0.02757767277449!GO:0008243;plasminogen activator activity;0.0276071556973199!GO:0051059;NF-kappaB binding;0.0278285601668356!GO:0045334;clathrin-coated endocytic vesicle;0.028039957470324!GO:0003746;translation elongation factor activity;0.0281920601892025!GO:0016251;general RNA polymerase II transcription factor activity;0.02844833881882!GO:0004680;casein kinase activity;0.0287150507229806!GO:0022406;membrane docking;0.0287150507229806!GO:0048278;vesicle docking;0.0287150507229806!GO:0003779;actin binding;0.0289140261959009!GO:0050178;phenylpyruvate tautomerase activity;0.0297853297179378!GO:0003682;chromatin binding;0.0303713771145666!GO:0005774;vacuolar membrane;0.0303713771145666!GO:0006897;endocytosis;0.0307203365867456!GO:0010324;membrane invagination;0.0307203365867456!GO:0008047;enzyme activator activity;0.0308732129663637!GO:0040008;regulation of growth;0.0310189844998253!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0314323495397099!GO:0000159;protein phosphatase type 2A complex;0.0317485664505685!GO:0032940;secretion by cell;0.0318584669475571!GO:0006497;protein amino acid lipidation;0.0319893033757697!GO:0030518;steroid hormone receptor signaling pathway;0.0320383772383975!GO:0043284;biopolymer biosynthetic process;0.0321202040631833!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0328806245420045!GO:0051052;regulation of DNA metabolic process;0.0328806245420045!GO:0005862;muscle thin filament tropomyosin;0.0335042454956525!GO:0008426;protein kinase C inhibitor activity;0.0337659094719434!GO:0022890;inorganic cation transmembrane transporter activity;0.0340039029439782!GO:0046519;sphingoid metabolic process;0.0343893108511705!GO:0030911;TPR domain binding;0.0344577326623319!GO:0000339;RNA cap binding;0.034596391015166!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0354345642465136!GO:0015002;heme-copper terminal oxidase activity;0.0354345642465136!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0354345642465136!GO:0004129;cytochrome-c oxidase activity;0.0354345642465136!GO:0045185;maintenance of protein localization;0.0354827014332111!GO:0003756;protein disulfide isomerase activity;0.0366785806106489!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0366785806106489!GO:0051651;maintenance of cellular localization;0.0367371223479864!GO:0007004;telomere maintenance via telomerase;0.0372388671411443!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0373460128644862!GO:0031901;early endosome membrane;0.0373460128644862!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0373830076959682!GO:0031371;ubiquitin conjugating enzyme complex;0.0379870933443173!GO:0000082;G1/S transition of mitotic cell cycle;0.0380462012398469!GO:0001889;liver development;0.0380462012398469!GO:0046983;protein dimerization activity;0.0381350192051035!GO:0030145;manganese ion binding;0.0384401079190084!GO:0007034;vacuolar transport;0.0385383034412024!GO:0005874;microtubule;0.0387909303750403!GO:0006506;GPI anchor biosynthetic process;0.0389104333803177!GO:0006376;mRNA splice site selection;0.039937942900447!GO:0000389;nuclear mRNA 3'-splice site recognition;0.039937942900447!GO:0031272;regulation of pseudopodium formation;0.0414278814735439!GO:0031269;pseudopodium formation;0.0414278814735439!GO:0031344;regulation of cell projection organization and biogenesis;0.0414278814735439!GO:0031268;pseudopodium organization and biogenesis;0.0414278814735439!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0414278814735439!GO:0031274;positive regulation of pseudopodium formation;0.0414278814735439!GO:0006607;NLS-bearing substrate import into nucleus;0.0414278814735439!GO:0016584;nucleosome positioning;0.0414278814735439!GO:0032594;protein transport within lipid bilayer;0.0414278814735439!GO:0032907;transforming growth factor-beta3 production;0.0414278814735439!GO:0032596;protein transport into lipid raft;0.0414278814735439!GO:0032910;regulation of transforming growth factor-beta3 production;0.0414278814735439!GO:0032595;B cell receptor transport within lipid bilayer;0.0414278814735439!GO:0033606;chemokine receptor transport within lipid bilayer;0.0414278814735439!GO:0032600;chemokine receptor transport out of lipid raft;0.0414278814735439!GO:0032599;protein transport out of lipid raft;0.0414278814735439!GO:0032597;B cell receptor transport into lipid raft;0.0414278814735439!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0414278814735439!GO:0006695;cholesterol biosynthetic process;0.0414508603118192!GO:0008283;cell proliferation;0.042992450042832!GO:0005784;translocon complex;0.0433663509564926!GO:0006904;vesicle docking during exocytosis;0.0437653941776114!GO:0051235;maintenance of localization;0.0444257251420868!GO:0001836;release of cytochrome c from mitochondria;0.044553688122492!GO:0043549;regulation of kinase activity;0.04460009967572!GO:0005669;transcription factor TFIID complex;0.0447675251420213!GO:0050662;coenzyme binding;0.0449394093970366!GO:0009966;regulation of signal transduction;0.0450090357221268!GO:0005758;mitochondrial intermembrane space;0.0455322510124969!GO:0016301;kinase activity;0.0455322510124969!GO:0031970;organelle envelope lumen;0.0456576049909265!GO:0032535;regulation of cellular component size;0.0459344515865603!GO:0022411;cellular component disassembly;0.0459826401362492!GO:0004722;protein serine/threonine phosphatase activity;0.0459965822570496!GO:0008286;insulin receptor signaling pathway;0.0459965822570496!GO:0008180;signalosome;0.0460635063956494!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0461748801856578!GO:0000287;magnesium ion binding;0.0471256400846299!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0471256400846299!GO:0010257;NADH dehydrogenase complex assembly;0.0471256400846299!GO:0033108;mitochondrial respiratory chain complex assembly;0.0471256400846299!GO:0030832;regulation of actin filament length;0.0471721950615706!GO:0030128;clathrin coat of endocytic vesicle;0.0472742038373833!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0472742038373833!GO:0030122;AP-2 adaptor complex;0.0472742038373833!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0473087865595058!GO:0008601;protein phosphatase type 2A regulator activity;0.0483887990164347!GO:0006405;RNA export from nucleus;0.0487145399816764!GO:0000786;nucleosome;0.0491919511682842!GO:0006505;GPI anchor metabolic process;0.0496168940900531!GO:0007040;lysosome organization and biogenesis;0.0496168940900531!GO:0006289;nucleotide-excision repair;0.0499990653750653
|sample_id=11334
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=TP53:2.55845924808;TBX4,5:2.32894301797;PPARG:1.96964636673;ZEB1:1.88524599164;TEF:1.72845182751;HIF1A:1.52498732462;VSX1,2:1.43623527952;ONECUT1,2:1.40354248059;T:1.38759646471;SNAI1..3:1.35552468063;TFCP2:1.0845906586;TEAD1:1.06060866472;ADNP_IRX_SIX_ZHX:1.02082167568;PAX1,9:1.00918831884;XCPE1{core}:0.995964864099;TFAP2{A,C}:0.964302422492;ARID5B:0.940036072349;ZNF148:0.894065897043;MTF1:0.841723446542;MYOD1:0.838819319216;UFEwm:0.798806993454;NKX2-1,4:0.679858353924;GLI1..3:0.64752556863;POU6F1:0.611332199802;ELK1,4_GABP{A,B1}:0.60986097406;TFAP2B:0.593757615412;TLX2:0.57974938406;MAZ:0.556693755016;FOXQ1:0.526265908535;TFDP1:0.504634358708;SP1:0.503311479673;bHLH_family:0.502808240656;SOX17:0.502587571677;HLF:0.502246944309;NKX2-2,8:0.486995093658;LMO2:0.459926876673;CEBPA,B_DDIT3:0.439767522912;FOS_FOS{B,L1}_JUN{B,D}:0.426948964506;GZF1:0.425128465814;NKX2-3_NKX2-5:0.424398149109;NKX3-2:0.379995638156;EGR1..3:0.369374449862;TFAP4:0.337396402833;PAX4:0.32668362122;HAND1,2:0.317943430195;TOPORS:0.317408567326;MED-1{core}:0.304834815113;POU1F1:0.29882950457;PAX5:0.285315394798;HOX{A4,D4}:0.284549622623;NR5A1,2:0.267884143957;HMGA1,2:0.23997288168;KLF4:0.2379831007;FOSL2:0.220380057953;BACH2:0.219084600269;GTF2A1,2:0.198929399965;IKZF1:0.198568267126;HIC1:0.192701012338;HOX{A6,A7,B6,B7}:0.192370308594;FOXM1:0.190865279692;SPZ1:0.186092677121;TBP:0.181036624669;ZBTB6:0.179241398214;FOXN1:0.178773080894;AR:0.178474730932;ZNF423:0.173994861238;EVI1:0.172489975151;NKX3-1:0.167992436405;POU3F1..4:0.154564464968;PITX1..3:0.152402129955;PAX2:0.138060385564;RXR{A,B,G}:0.13270825572;EBF1:0.118414445613;NR3C1:0.112947427615;FOXL1:0.0975912626394;STAT5{A,B}:0.0872603710065;ATF4:0.0843080002864;MTE{core}:0.0691329045781;NFIL3:0.0664223092409;HMX1:0.0372568910081;ESR1:0.0358343943832;RXRA_VDR{dimer}:0.0308259741694;ZFP161:0.0238741252562;POU2F1..3:0.0116657388883;NFIX:0.0033497568876;SMAD1..7,9:-0.0200867252844;NR6A1:-0.0204551404248;ZIC1..3:-0.0222159784273;HSF1,2:-0.0329350130691;CRX:-0.0584149218673;CDC5L:-0.0806409651599;AIRE:-0.0852658860024;REST:-0.0856907844688;ALX4:-0.0951874883619;ZNF238:-0.0956029816743;ZBTB16:-0.104483991044;FOX{F1,F2,J1}:-0.107577856242;RBPJ:-0.124706807535;GFI1B:-0.131985728738;FOXO1,3,4:-0.136656466688;ZNF143:-0.13879871104;MYBL2:-0.168046102955;NFE2:-0.172204366111;NFKB1_REL_RELA:-0.183253834471;TLX1..3_NFIC{dimer}:-0.189073661772;NANOG{mouse}:-0.196753741204;HNF1A:-0.199161041023;MAFB:-0.203651591618;GTF2I:-0.212826126407;ELF1,2,4:-0.229281109027;CREB1:-0.239558092106;PAX8:-0.264952163559;LHX3,4:-0.299284632254;SPI1:-0.304572305753;ETS1,2:-0.318907942073;LEF1_TCF7_TCF7L1,2:-0.325886595919;SOX2:-0.326322826384;NANOG:-0.344758647285;ATF2:-0.350354962032;STAT2,4,6:-0.366805103203;HNF4A_NR2F1,2:-0.377934581337;RREB1:-0.387156852635;EN1,2:-0.39715489642;GATA6:-0.39864535783;PATZ1:-0.403761331019;IRF7:-0.406912380548;POU5F1:-0.432149863515;NRF1:-0.436441792028;FOXA2:-0.440677669753;EP300:-0.442633493386;FOXD3:-0.448605674075;NHLH1,2:-0.470648832709;JUN:-0.47917249094;OCT4_SOX2{dimer}:-0.482140630461;PRDM1:-0.489050277313;MYB:-0.501164059897;RORA:-0.505660581084;NR1H4:-0.51355535949;ATF5_CREB3:-0.518003152693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544513028629;ATF6:-0.546703760701;MYFfamily:-0.55191407975;MZF1:-0.553657787694;AHR_ARNT_ARNT2:-0.565399624645;FOXP1:-0.601661184974;CDX1,2,4:-0.601740132685;XBP1:-0.602112507807;SPIB:-0.607132199423;NKX6-1,2:-0.619874467092;BREu{core}:-0.640153612755;STAT1,3:-0.640551890018;PDX1:-0.657128214859;PAX6:-0.662257196146;ALX1:-0.671329101274;NFE2L2:-0.671708307379;ZNF384:-0.700627187758;HOX{A5,B5}:-0.714775612604;RUNX1..3:-0.716572527658;GATA4:-0.733911087092;CUX2:-0.734108669769;YY1:-0.743614743482;SRF:-0.749590506698;NFY{A,B,C}:-0.776653837463;BPTF:-0.789027093808;RFX1:-0.795370062428;PAX3,7:-0.809279279279;E2F1..5:-0.811704470146;RFX2..5_RFXANK_RFXAP:-0.819338454971;HES1:-0.835794157812;FOXP3:-0.840622918924;ESRRA:-0.854812718351;DMAP1_NCOR{1,2}_SMARC:-0.884932460713;FOX{D1,D2}:-0.886491733289;NFE2L1:-0.897176308994;SOX{8,9,10}:-0.898302111744;MEF2{A,B,C,D}:-0.903316903073;IKZF2:-0.932103851613;NFATC1..3:-0.972601077022;GCM1,2:-0.97629880824;IRF1,2:-0.977181352791;PRRX1,2:-0.996471820782;HOXA9_MEIS1:-1.08564021453;SREBF1,2:-1.09929954968;GFI1:-1.12868239879;DBP:-1.13751551923;TGIF1:-1.18357824658;HBP1_HMGB_SSRP1_UBTF:-1.19001772331;PBX1:-1.20448475469;FOX{I1,J2}:-1.2589163847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2720935329;SOX5:-1.29094861694;TAL1_TCF{3,4,12}:-1.35887373674
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11334-117F2;search_select_hide=table117:FF:11334-117F2
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Small Airway Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11975
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage58 years old adult
sexmale
age58
cell typepneumocyte
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004717
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11975 CAGE DRX008465 DRR009337
Accession ID Hg19

Library idBAMCTSS
CNhs11975 DRZ000762 DRZ002147
Accession ID Hg38

Library idBAMCTSS
CNhs11975 DRZ012112 DRZ013497
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004717
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GAGTGG sRNA-Seq DRX037088 DRR041454
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GAGTGG DRZ007096


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0666
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.233
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.404
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.141
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0436
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0604
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.141
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.24
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.333
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.325
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.059
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.15
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.749
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.312
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.41
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.404
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.589
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11975

Jaspar motifP-value
MA0002.20.0143
MA0003.10.75
MA0004.10.185
MA0006.10.0134
MA0007.10.409
MA0009.10.184
MA0014.10.499
MA0017.10.531
MA0018.20.0312
MA0019.10.913
MA0024.13.61734e-5
MA0025.10.601
MA0027.10.555
MA0028.10.0747
MA0029.10.0524
MA0030.10.855
MA0031.10.636
MA0035.20.512
MA0038.14.50989e-4
MA0039.20.0596
MA0040.10.377
MA0041.10.535
MA0042.10.232
MA0043.10.456
MA0046.10.888
MA0047.20.204
MA0048.10.594
MA0050.14.50827e-9
MA0051.11.64954e-6
MA0052.10.00152
MA0055.10.0465
MA0057.10.155
MA0058.10.0214
MA0059.10.661
MA0060.12.43706e-6
MA0061.10.0322
MA0062.20.67
MA0065.20.746
MA0066.10.774
MA0067.10.057
MA0068.10.093
MA0069.10.214
MA0070.10.242
MA0071.10.199
MA0072.10.36
MA0073.10.843
MA0074.10.771
MA0076.10.473
MA0077.10.377
MA0078.10.907
MA0079.20.0921
MA0080.22.89197e-5
MA0081.10.0146
MA0083.10.0895
MA0084.10.182
MA0087.10.76
MA0088.10.129
MA0090.10.00226
MA0091.10.21
MA0092.10.35
MA0093.10.113
MA0099.20.0651
MA0100.10.0252
MA0101.10.128
MA0102.20.941
MA0103.11.10443e-7
MA0104.20.0481
MA0105.10.0027
MA0106.11.281e-10
MA0107.10.0878
MA0108.20.709
MA0111.10.753
MA0112.20.334
MA0113.10.971
MA0114.10.286
MA0115.10.975
MA0116.10.0339
MA0117.10.193
MA0119.10.824
MA0122.10.312
MA0124.10.28
MA0125.10.143
MA0131.10.98
MA0135.10.725
MA0136.10.00267
MA0137.20.00348
MA0138.20.995
MA0139.10.478
MA0140.10.415
MA0141.10.743
MA0142.10.369
MA0143.10.917
MA0144.10.444
MA0145.10.0402
MA0146.10.368
MA0147.10.0802
MA0148.10.144
MA0149.10.178
MA0150.10.172
MA0152.10.321
MA0153.10.43
MA0154.10.155
MA0155.10.433
MA0156.10.126
MA0157.10.185
MA0159.10.766
MA0160.10.599
MA0162.10.468
MA0163.10.00723
MA0164.10.992
MA0258.10.186
MA0259.10.999



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11975

Novel motifP-value
10.418
100.0818
1000.599
1010.0213
1020.324
1030.301
1040.858
1050.77
1060.0412
1070.0947
1080.0786
1090.0966
110.906
1100.961
1110.441
1120.724
1130.999
1140.761
1150.305
1160.634
1170.973
1180.607
1190.774
120.596
1200.077
1210.685
1220.537
1230.671
1240.0105
1250.741
1260.862
1270.584
1280.817
1290.59
130.721
1300.172
1310.896
1320.273
1335.19342e-4
1340.092
1350.72
1368.81196e-4
1370.003
1380.732
1390.665
140.757
1400.248
1410.442
1420.379
1430.166
1440.0797
1450.549
1460.191
1470.101
1480.0598
1490.822
150.214
1500.222
1510.284
1528.28033e-4
1530.505
1540.973
1550.654
1560.897
1570.253
1580.0714
1590.772
160.0665
1600.1
1610.524
1620.692
1630.567
1640.428
1650.891
1660.688
1670.366
1680.614
1690.465
170.46
180.293
190.459
20.369
200.552
210.897
220.948
230.425
240.201
250.31
260.84
270.786
280.86
290.721
30.541
300.174
310.984
320.788
330.489
340.523
350.0152
360.0433
370.633
380.944
390.505
40.689
400.885
410.153
420.459
430.324
440.64
450.211
460.773
470.784
480.793
490.0104
50.364
500.708
510.621
520.148
530.0403
540.888
550.609
560.795
570.775
580.349
590.421
60.0696
600.286
610.972
620.185
630.595
640.721
650.964
660.715
670.66
680.439
690.678
70.651
700.04
710.132
720.634
736.23061e-4
740.00891
750.807
760.313
770.409
780.108
790.246
80.927
800.121
810.114
820.232
830.264
840.445
850.538
860.868
870.0108
880.661
890.297
90.226
900.309
910.447
920.457
930.373
940.296
950.109
960.248
970.713
980.194
990.107



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11975


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002368 (respiratory epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000166 (human small airway epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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