FF:11335-117F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005488 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005488 | ||
|accession_numbers=CAGE;DRX008496;DRR009368;DRZ000793;DRZ002178;DRZ012143;DRZ013528 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037245;DRR041611;DRZ007253 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000183 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11335-117F3 | |id=FF:11335-117F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000183 | ||
|is_obsolete= | |||
|library_id=CNhs11976 | |||
|library_id_phase_based=2:CNhs11976 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11335 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GAGTGG.11335 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11335 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GAGTGG.11335 | |||
|name=Smooth Muscle Cells - Prostate, donor2 | |name=Smooth Muscle Cells - Prostate, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11976,LSID836,release011,COMPLETED | |profile_hcage=CNhs11976,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0287199675136495,0,0,0,0,0.168315032672112,0,-0.00523037402482496,0.227919023753141,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254146034855532,0,0,0,0,0,0.284789141825428,0,0,-0.0247939605406478,0,0,0,0,0,0,0,0,0,0,0.057439935027299,0,0.160606820801534,0.057439935027299,0,0,0,0,0,0,0,0.00450494640081515,0,0,0,0.057439935027299,0,0.0247695747522034,0,0.201825364269232,0,0,0.0108190020251175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0722402252374572,0,0,0,0,0,0,0.00325115138965759,0.054081314619107,0,0.000598300740779378,-0.0584468268118252,0.138939265692957,0,0.057439935027299,0,0.057439935027299,0.0101272780005081,0.127510707178024,0,0,0,0,0,0,0.057439935027299,0,0,0,0,0,0,0,0,0,0,-0.0676536264088115,0,0,0,0.106817756478025,0.277441648469787,0.057439935027299,0,0.057439935027299,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117F3 | |rna_tube_id=117F3 | ||
|rna_weight_ug=35.9 | |rna_weight_ug=35.9 | ||
|rnaseq_library_id=SRhi10014.GAGTGG | |||
|sample_age=34 | |sample_age=34 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-2587 | |sample_cell_catalog=CC-2587 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.68815434893982e-217!GO:0005737;cytoplasm;2.11707948088351e-192!GO:0043231;intracellular membrane-bound organelle;7.94868751602641e-169!GO:0043227;membrane-bound organelle;7.94868751602641e-169!GO:0043226;organelle;5.84259283299827e-168!GO:0043229;intracellular organelle;1.5653984359757e-167!GO:0044444;cytoplasmic part;1.78562008915983e-145!GO:0044422;organelle part;3.41717096657063e-124!GO:0044446;intracellular organelle part;1.78477121723932e-122!GO:0032991;macromolecular complex;4.12715573832953e-85!GO:0030529;ribonucleoprotein complex;1.00527361614211e-82!GO:0044238;primary metabolic process;2.45710127002301e-82!GO:0044237;cellular metabolic process;1.93480854196237e-81!GO:0043170;macromolecule metabolic process;3.80604373256168e-73!GO:0005515;protein binding;7.77123103039559e-71!GO:0005739;mitochondrion;6.10407811699758e-67!GO:0043233;organelle lumen;8.47743695573132e-67!GO:0031974;membrane-enclosed lumen;8.47743695573132e-67!GO:0003723;RNA binding;7.01250797686661e-63!GO:0044428;nuclear part;1.63608962840076e-58!GO:0005840;ribosome;2.14816894205576e-53!GO:0031090;organelle membrane;2.29114105819493e-53!GO:0019538;protein metabolic process;1.52063575624859e-52!GO:0005634;nucleus;2.10755709225139e-52!GO:0006412;translation;1.36011241006579e-49!GO:0003735;structural constituent of ribosome;4.76745553716652e-47!GO:0044260;cellular macromolecule metabolic process;4.95676802483449e-47!GO:0044267;cellular protein metabolic process;5.52420550798704e-46!GO:0009058;biosynthetic process;5.55092368289478e-45!GO:0044429;mitochondrial part;3.07843615590837e-44!GO:0015031;protein transport;8.83465914221937e-43!GO:0016043;cellular component organization and biogenesis;6.44748861758865e-42!GO:0044249;cellular biosynthetic process;2.14168350365655e-41!GO:0033036;macromolecule localization;3.26395875253874e-41!GO:0006396;RNA processing;8.88900579693739e-41!GO:0043234;protein complex;1.07573102796695e-40!GO:0033279;ribosomal subunit;1.91934814341022e-40!GO:0009059;macromolecule biosynthetic process;4.01924441858445e-39!GO:0045184;establishment of protein localization;4.96927708914304e-39!GO:0005829;cytosol;7.75964407586863e-39!GO:0008104;protein localization;1.58508916456413e-38!GO:0031967;organelle envelope;4.30219220769599e-38!GO:0031975;envelope;1.06008387598058e-37!GO:0031981;nuclear lumen;1.38099327132778e-36!GO:0043283;biopolymer metabolic process;1.51920061575832e-34!GO:0010467;gene expression;3.63917537040472e-34!GO:0016071;mRNA metabolic process;1.10172247304852e-32!GO:0046907;intracellular transport;2.08132246066516e-31!GO:0008380;RNA splicing;9.95310845022821e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22006430909191e-30!GO:0065003;macromolecular complex assembly;2.35364184280431e-29!GO:0005740;mitochondrial envelope;8.0681275709049e-29!GO:0006397;mRNA processing;8.7456947628536e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.7456947628536e-28!GO:0031966;mitochondrial membrane;3.36576594567034e-27!GO:0019866;organelle inner membrane;5.64366085430118e-27!GO:0006886;intracellular protein transport;1.10988654443567e-26!GO:0022607;cellular component assembly;1.22074788125205e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.3189527658678e-26!GO:0005743;mitochondrial inner membrane;1.44692761507128e-25!GO:0005783;endoplasmic reticulum;1.77926238697878e-25!GO:0044445;cytosolic part;1.06600622555916e-23!GO:0006996;organelle organization and biogenesis;1.88205954304554e-23!GO:0005654;nucleoplasm;2.14106137394478e-23!GO:0006119;oxidative phosphorylation;6.64224186107293e-23!GO:0012505;endomembrane system;7.09867929275532e-23!GO:0005681;spliceosome;7.85126972551521e-22!GO:0006457;protein folding;3.7621767426437e-21!GO:0015934;large ribosomal subunit;7.27532003127079e-21!GO:0015935;small ribosomal subunit;1.35146101967556e-20!GO:0044455;mitochondrial membrane part;1.7195983438633e-20!GO:0043228;non-membrane-bound organelle;6.74047000048464e-20!GO:0043232;intracellular non-membrane-bound organelle;6.74047000048464e-20!GO:0051649;establishment of cellular localization;7.66821599399769e-20!GO:0048770;pigment granule;1.08847314457721e-19!GO:0042470;melanosome;1.08847314457721e-19!GO:0051641;cellular localization;1.2381806922091e-19!GO:0044451;nucleoplasm part;1.84781003610715e-19!GO:0044432;endoplasmic reticulum part;2.1717067372492e-19!GO:0031980;mitochondrial lumen;6.46386828536339e-19!GO:0005759;mitochondrial matrix;6.46386828536339e-19!GO:0000166;nucleotide binding;4.88285106019559e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.20564743129728e-17!GO:0016462;pyrophosphatase activity;1.22551046139477e-17!GO:0005794;Golgi apparatus;1.71971329929452e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.75665321721186e-17!GO:0005746;mitochondrial respiratory chain;2.69174370130008e-17!GO:0022618;protein-RNA complex assembly;4.14234719412285e-17!GO:0051186;cofactor metabolic process;4.47874628109472e-17!GO:0017111;nucleoside-triphosphatase activity;4.92888356535947e-17!GO:0043285;biopolymer catabolic process;1.41954803183107e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.56600550759484e-16!GO:0008135;translation factor activity, nucleic acid binding;3.25406686053013e-16!GO:0008134;transcription factor binding;3.95575517068926e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.70812309625988e-16!GO:0044265;cellular macromolecule catabolic process;5.98395866130111e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.06009669914146e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.03673443461002e-15!GO:0003676;nucleic acid binding;1.10461997146377e-15!GO:0016874;ligase activity;1.56371858523564e-15!GO:0019941;modification-dependent protein catabolic process;1.5833654966926e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.5833654966926e-15!GO:0006259;DNA metabolic process;1.98492579646885e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.98492579646885e-15!GO:0003954;NADH dehydrogenase activity;1.98492579646885e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.98492579646885e-15!GO:0044257;cellular protein catabolic process;2.14118033399523e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.3879395714796e-15!GO:0006512;ubiquitin cycle;3.20224903084463e-15!GO:0048193;Golgi vesicle transport;4.50283908448097e-15!GO:0009057;macromolecule catabolic process;4.9184647639103e-15!GO:0030163;protein catabolic process;5.93780668924266e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.58119965287525e-15!GO:0005761;mitochondrial ribosome;1.48664205815926e-14!GO:0000313;organellar ribosome;1.48664205815926e-14!GO:0051082;unfolded protein binding;2.6250265752485e-14!GO:0016192;vesicle-mediated transport;4.31457326992856e-14!GO:0005730;nucleolus;6.13793634455865e-14!GO:0042775;organelle ATP synthesis coupled electron transport;8.26219898856304e-14!GO:0042773;ATP synthesis coupled electron transport;8.26219898856304e-14!GO:0044248;cellular catabolic process;9.98990483772552e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.08769529930944e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.36489039728633e-13!GO:0045271;respiratory chain complex I;1.36489039728633e-13!GO:0005747;mitochondrial respiratory chain complex I;1.36489039728633e-13!GO:0006605;protein targeting;1.44141450198118e-13!GO:0006732;coenzyme metabolic process;1.44992480950304e-13!GO:0005789;endoplasmic reticulum membrane;3.24410244013818e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.62752214682039e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.0097915069416e-13!GO:0007049;cell cycle;4.86263589316776e-13!GO:0016070;RNA metabolic process;8.93380485753204e-13!GO:0003743;translation initiation factor activity;1.09569894982452e-12!GO:0005793;ER-Golgi intermediate compartment;1.35704738770933e-12!GO:0032553;ribonucleotide binding;2.14195745739004e-12!GO:0032555;purine ribonucleotide binding;2.14195745739004e-12!GO:0017076;purine nucleotide binding;2.62060383983563e-12!GO:0009055;electron carrier activity;9.44196730877116e-12!GO:0006413;translational initiation;2.30018963749562e-11!GO:0003712;transcription cofactor activity;2.33665669062458e-11!GO:0043412;biopolymer modification;2.64436930510056e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.71496268067467e-11!GO:0000375;RNA splicing, via transesterification reactions;3.71496268067467e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.71496268067467e-11!GO:0006464;protein modification process;1.73153931562895e-10!GO:0005635;nuclear envelope;4.36072919256644e-10!GO:0042254;ribosome biogenesis and assembly;5.19880489208068e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.19880489208068e-10!GO:0012501;programmed cell death;9.18839394602846e-10!GO:0006446;regulation of translational initiation;9.3536042187173e-10!GO:0048523;negative regulation of cellular process;1.2636770428112e-09!GO:0006915;apoptosis;1.53998759048342e-09!GO:0016604;nuclear body;1.76141155738413e-09!GO:0009259;ribonucleotide metabolic process;1.96630244047784e-09!GO:0016491;oxidoreductase activity;2.09086458476365e-09!GO:0031965;nuclear membrane;2.65044484630367e-09!GO:0022402;cell cycle process;2.94508848395847e-09!GO:0008565;protein transporter activity;3.62007936463924e-09!GO:0032559;adenyl ribonucleotide binding;4.34463179043229e-09!GO:0006913;nucleocytoplasmic transport;4.44846155997628e-09!GO:0006163;purine nucleotide metabolic process;4.51445502564861e-09!GO:0005524;ATP binding;4.57297854936498e-09!GO:0043687;post-translational protein modification;5.12472640463166e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.8352729286427e-09!GO:0009150;purine ribonucleotide metabolic process;6.45003989131258e-09!GO:0030554;adenyl nucleotide binding;6.59545549831317e-09!GO:0006974;response to DNA damage stimulus;7.55005812076566e-09!GO:0051169;nuclear transport;8.22692220859186e-09!GO:0051188;cofactor biosynthetic process;8.4381864392209e-09!GO:0006399;tRNA metabolic process;8.86977213417781e-09!GO:0009056;catabolic process;9.21379068316138e-09!GO:0005788;endoplasmic reticulum lumen;9.21379068316138e-09!GO:0019787;small conjugating protein ligase activity;1.00368740293155e-08!GO:0008219;cell death;1.13035705573779e-08!GO:0016265;death;1.13035705573779e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1914901947367e-08!GO:0008639;small protein conjugating enzyme activity;1.20225427799115e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.22523640325386e-08!GO:0006461;protein complex assembly;1.39944538665037e-08!GO:0009060;aerobic respiration;1.44652483990436e-08!GO:0006164;purine nucleotide biosynthetic process;1.48599101293098e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.7693750687732e-08!GO:0009260;ribonucleotide biosynthetic process;1.81638347585758e-08!GO:0015986;ATP synthesis coupled proton transport;2.03300238502232e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.03300238502232e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.03922638721002e-08!GO:0004842;ubiquitin-protein ligase activity;2.23801745834029e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.23801745834029e-08!GO:0003924;GTPase activity;3.01097814111362e-08!GO:0044431;Golgi apparatus part;3.09730444782088e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.3819562197486e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.3819562197486e-08!GO:0042623;ATPase activity, coupled;3.79374898569736e-08!GO:0009141;nucleoside triphosphate metabolic process;3.99984076840102e-08!GO:0016887;ATPase activity;4.26344792835929e-08!GO:0044453;nuclear membrane part;4.26344792835929e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.63194315721807e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.63194315721807e-08!GO:0019829;cation-transporting ATPase activity;5.6937869904981e-08!GO:0045333;cellular respiration;5.80343778711218e-08!GO:0048519;negative regulation of biological process;6.05197705500391e-08!GO:0016881;acid-amino acid ligase activity;6.34821957986459e-08!GO:0017038;protein import;6.61743589193193e-08!GO:0016607;nuclear speck;7.8196879575188e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.33271398506423e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.33271398506423e-08!GO:0006366;transcription from RNA polymerase II promoter;9.75597736718964e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.01169302226345e-07!GO:0005768;endosome;1.21769280217215e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.34424685323734e-07!GO:0046034;ATP metabolic process;1.41967332020758e-07!GO:0030120;vesicle coat;1.53965682723048e-07!GO:0030662;coated vesicle membrane;1.53965682723048e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.67838097629624e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.67838097629624e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.67838097629624e-07!GO:0051726;regulation of cell cycle;2.29081695480036e-07!GO:0051246;regulation of protein metabolic process;2.4124051567879e-07!GO:0000074;regulation of progression through cell cycle;2.52924723667377e-07!GO:0009117;nucleotide metabolic process;2.76062196062108e-07!GO:0006754;ATP biosynthetic process;2.80909236733936e-07!GO:0006753;nucleoside phosphate metabolic process;2.80909236733936e-07!GO:0006099;tricarboxylic acid cycle;3.34602425463175e-07!GO:0046356;acetyl-CoA catabolic process;3.34602425463175e-07!GO:0043038;amino acid activation;3.40810411138415e-07!GO:0006418;tRNA aminoacylation for protein translation;3.40810411138415e-07!GO:0043039;tRNA aminoacylation;3.40810411138415e-07!GO:0000278;mitotic cell cycle;3.49577380682319e-07!GO:0051187;cofactor catabolic process;3.61327044721277e-07!GO:0008026;ATP-dependent helicase activity;3.86560736251952e-07!GO:0065004;protein-DNA complex assembly;3.94616281062693e-07!GO:0006323;DNA packaging;4.09652597750873e-07!GO:0051276;chromosome organization and biogenesis;4.12975446199384e-07!GO:0031982;vesicle;4.18314220275894e-07!GO:0048475;coated membrane;4.45929663211391e-07!GO:0030117;membrane coat;4.45929663211391e-07!GO:0031988;membrane-bound vesicle;4.58180615204104e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.2385505839621e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.51429775405025e-07!GO:0009108;coenzyme biosynthetic process;5.73808536258713e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.24185486572267e-07!GO:0009109;coenzyme catabolic process;6.36725879360463e-07!GO:0004386;helicase activity;6.36725879360463e-07!GO:0043069;negative regulation of programmed cell death;6.4803281586957e-07!GO:0065002;intracellular protein transport across a membrane;6.53286271417948e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.61185871528973e-07!GO:0031410;cytoplasmic vesicle;7.10306360297242e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.53397357411046e-07!GO:0006084;acetyl-CoA metabolic process;8.57237827450485e-07!GO:0043066;negative regulation of apoptosis;9.92791332106472e-07!GO:0016853;isomerase activity;9.92791332106472e-07!GO:0050794;regulation of cellular process;1.15233184652073e-06!GO:0045454;cell redox homeostasis;1.29621959855793e-06!GO:0009719;response to endogenous stimulus;1.41707720339664e-06!GO:0005770;late endosome;1.46113453887256e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.92270961473991e-06!GO:0006281;DNA repair;2.01057755231056e-06!GO:0005773;vacuole;2.12916640866841e-06!GO:0045259;proton-transporting ATP synthase complex;2.32057085584937e-06!GO:0005667;transcription factor complex;2.40698335980609e-06!GO:0043067;regulation of programmed cell death;2.43883883957025e-06!GO:0007005;mitochondrion organization and biogenesis;2.45081081533302e-06!GO:0003714;transcription corepressor activity;2.5280959121657e-06!GO:0006916;anti-apoptosis;2.61685225005873e-06!GO:0042981;regulation of apoptosis;2.78944336464367e-06!GO:0006364;rRNA processing;3.48904458028662e-06!GO:0003697;single-stranded DNA binding;3.55623367651002e-06!GO:0006091;generation of precursor metabolites and energy;3.57517563247033e-06!GO:0000139;Golgi membrane;3.59758295086623e-06!GO:0005643;nuclear pore;3.93043867350457e-06!GO:0045786;negative regulation of progression through cell cycle;4.12788372211795e-06!GO:0004298;threonine endopeptidase activity;4.56047899527227e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.86133920398799e-06!GO:0006752;group transfer coenzyme metabolic process;5.93955986046527e-06!GO:0032446;protein modification by small protein conjugation;6.31483449944381e-06!GO:0016072;rRNA metabolic process;6.77368970773336e-06!GO:0008654;phospholipid biosynthetic process;8.22013046954746e-06!GO:0016787;hydrolase activity;8.2631682183993e-06!GO:0005525;GTP binding;8.8731998679524e-06!GO:0016567;protein ubiquitination;9.27927148801762e-06!GO:0006333;chromatin assembly or disassembly;9.64614508351286e-06!GO:0044440;endosomal part;9.84323028688319e-06!GO:0010008;endosome membrane;9.84323028688319e-06!GO:0005762;mitochondrial large ribosomal subunit;1.042640423404e-05!GO:0000315;organellar large ribosomal subunit;1.042640423404e-05!GO:0031252;leading edge;1.15630524296968e-05!GO:0005798;Golgi-associated vesicle;1.15630524296968e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.26489829691263e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.29489528338665e-05!GO:0000245;spliceosome assembly;1.51199992236179e-05!GO:0051170;nuclear import;1.5561500551268e-05!GO:0016564;transcription repressor activity;1.69964161626042e-05!GO:0016859;cis-trans isomerase activity;1.71163361807686e-05!GO:0006613;cotranslational protein targeting to membrane;1.71163361807686e-05!GO:0003713;transcription coactivator activity;1.84195846088796e-05!GO:0000323;lytic vacuole;1.8585916433519e-05!GO:0005764;lysosome;1.8585916433519e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.86034357118434e-05!GO:0043566;structure-specific DNA binding;1.88586648938934e-05!GO:0000151;ubiquitin ligase complex;1.99799595114234e-05!GO:0005694;chromosome;2.0291757768834e-05!GO:0031324;negative regulation of cellular metabolic process;2.4342090374275e-05!GO:0016310;phosphorylation;2.47412790842338e-05!GO:0050657;nucleic acid transport;2.47412790842338e-05!GO:0051236;establishment of RNA localization;2.47412790842338e-05!GO:0050658;RNA transport;2.47412790842338e-05!GO:0006403;RNA localization;2.56645333956835e-05!GO:0006260;DNA replication;2.91195513261217e-05!GO:0046930;pore complex;2.92136634402096e-05!GO:0006606;protein import into nucleus;3.26047490537088e-05!GO:0006793;phosphorus metabolic process;3.48825225735633e-05!GO:0006796;phosphate metabolic process;3.48825225735633e-05!GO:0051789;response to protein stimulus;3.9400413645147e-05!GO:0006986;response to unfolded protein;3.9400413645147e-05!GO:0032561;guanyl ribonucleotide binding;5.04325314940304e-05!GO:0019001;guanyl nucleotide binding;5.04325314940304e-05!GO:0050789;regulation of biological process;5.21836767331677e-05!GO:0016740;transferase activity;5.48245524329254e-05!GO:0030867;rough endoplasmic reticulum membrane;5.70976184725025e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.42921540279088e-05!GO:0003724;RNA helicase activity;7.1872667198471e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.1872667198471e-05!GO:0019843;rRNA binding;7.2484698173234e-05!GO:0016563;transcription activator activity;7.45529773836689e-05!GO:0044427;chromosomal part;7.53313325367593e-05!GO:0019867;outer membrane;7.76502073223974e-05!GO:0031968;organelle outer membrane;8.06248996769496e-05!GO:0005791;rough endoplasmic reticulum;9.2015748596751e-05!GO:0000785;chromatin;9.97732745166564e-05!GO:0043623;cellular protein complex assembly;0.00010463503305248!GO:0005048;signal sequence binding;0.000111150083450142!GO:0005905;coated pit;0.000111679947262014!GO:0016568;chromatin modification;0.000114538870974277!GO:0006334;nucleosome assembly;0.000117775998006636!GO:0033116;ER-Golgi intermediate compartment membrane;0.000144561741747402!GO:0000087;M phase of mitotic cell cycle;0.000149881768092294!GO:0043021;ribonucleoprotein binding;0.000161656371837598!GO:0006612;protein targeting to membrane;0.000195706005435013!GO:0007067;mitosis;0.000204659837739134!GO:0022403;cell cycle phase;0.000209599440009558!GO:0000314;organellar small ribosomal subunit;0.000212719892807302!GO:0005763;mitochondrial small ribosomal subunit;0.000212719892807302!GO:0006414;translational elongation;0.000239284333634424!GO:0009892;negative regulation of metabolic process;0.000246849602595853!GO:0030663;COPI coated vesicle membrane;0.000259511323196013!GO:0030126;COPI vesicle coat;0.000259511323196013!GO:0030133;transport vesicle;0.000266760445816598!GO:0051301;cell division;0.000271324551380836!GO:0008361;regulation of cell size;0.000289347597298102!GO:0005769;early endosome;0.000301662236805294!GO:0031497;chromatin assembly;0.000301721510381921!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000341611944674242!GO:0016779;nucleotidyltransferase activity;0.000342093877449404!GO:0016049;cell growth;0.000352163694085101!GO:0005741;mitochondrial outer membrane;0.000354323489854637!GO:0051028;mRNA transport;0.000360951388026633!GO:0008610;lipid biosynthetic process;0.000365327572229943!GO:0008250;oligosaccharyl transferase complex;0.000387802270180586!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00039394662937714!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000446589274960866!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000452283103556342!GO:0005885;Arp2/3 protein complex;0.000468470614305395!GO:0015630;microtubule cytoskeleton;0.000483737887742352!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000517636809754543!GO:0030137;COPI-coated vesicle;0.000517636809754543!GO:0046474;glycerophospholipid biosynthetic process;0.000529049702744761!GO:0009165;nucleotide biosynthetic process;0.0005429773784905!GO:0004576;oligosaccharyl transferase activity;0.000553697995200523!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000555000843318601!GO:0016481;negative regulation of transcription;0.000591832878374132!GO:0030176;integral to endoplasmic reticulum membrane;0.000593638319881793!GO:0044262;cellular carbohydrate metabolic process;0.000646335246219266!GO:0018196;peptidyl-asparagine modification;0.000688859742580568!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000688859742580568!GO:0043284;biopolymer biosynthetic process;0.000720113424932776!GO:0016126;sterol biosynthetic process;0.000724614824256348!GO:0003899;DNA-directed RNA polymerase activity;0.000766579423551997!GO:0051427;hormone receptor binding;0.000862689899790313!GO:0001558;regulation of cell growth;0.000868771819556673!GO:0006891;intra-Golgi vesicle-mediated transport;0.000873230368251507!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000878736677244245!GO:0051920;peroxiredoxin activity;0.000879482307053601!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000888869074568413!GO:0004177;aminopeptidase activity;0.000939109372486189!GO:0005581;collagen;0.000954043559401526!GO:0006626;protein targeting to mitochondrion;0.00106560202823811!GO:0030036;actin cytoskeleton organization and biogenesis;0.00106743315197113!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00116674874894077!GO:0015399;primary active transmembrane transporter activity;0.00116674874894077!GO:0046467;membrane lipid biosynthetic process;0.0011687752169049!GO:0043681;protein import into mitochondrion;0.0011903178788451!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00124776136976577!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00135136869159323!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00135136869159323!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00135136869159323!GO:0005813;centrosome;0.00138991761863664!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00150434862225272!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00150678356273301!GO:0048522;positive regulation of cellular process;0.00150853588082675!GO:0019752;carboxylic acid metabolic process;0.00152241693575234!GO:0007264;small GTPase mediated signal transduction;0.00153826097058251!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00153826097058251!GO:0035257;nuclear hormone receptor binding;0.00158694270677814!GO:0006082;organic acid metabolic process;0.00160603352531229!GO:0006839;mitochondrial transport;0.00175502401497825!GO:0019899;enzyme binding;0.00186870976280646!GO:0048471;perinuclear region of cytoplasm;0.0019033317144342!GO:0031072;heat shock protein binding;0.00191368518622737!GO:0045045;secretory pathway;0.00203038296644799!GO:0051329;interphase of mitotic cell cycle;0.00219857334055034!GO:0008186;RNA-dependent ATPase activity;0.00229289591167773!GO:0030027;lamellipodium;0.00239410958014962!GO:0048500;signal recognition particle;0.00240026454368561!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00240685056499244!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00243493225568153!GO:0046483;heterocycle metabolic process;0.00243843330379813!GO:0006695;cholesterol biosynthetic process;0.00266022244509838!GO:0006979;response to oxidative stress;0.00274996049244738!GO:0007040;lysosome organization and biogenesis;0.00288115725102029!GO:0042802;identical protein binding;0.00288685803242052!GO:0046489;phosphoinositide biosynthetic process;0.00295497762205672!GO:0003729;mRNA binding;0.00297719871021152!GO:0007243;protein kinase cascade;0.00304666474335338!GO:0030134;ER to Golgi transport vesicle;0.00309696161144887!GO:0043488;regulation of mRNA stability;0.00309696161144887!GO:0043487;regulation of RNA stability;0.00309696161144887!GO:0005815;microtubule organizing center;0.00331042627146548!GO:0016044;membrane organization and biogenesis;0.00332512256166059!GO:0008180;signalosome;0.00338347078557056!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00347989114957441!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00347989114957441!GO:0019222;regulation of metabolic process;0.00351802307430823!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00356302080751861!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00356302080751861!GO:0030132;clathrin coat of coated pit;0.00374195285570996!GO:0051252;regulation of RNA metabolic process;0.00390143905198796!GO:0030659;cytoplasmic vesicle membrane;0.00401102638090775!GO:0015992;proton transport;0.00401372181729792!GO:0016363;nuclear matrix;0.00401372181729792!GO:0016197;endosome transport;0.00401372181729792!GO:0006818;hydrogen transport;0.00404636460397177!GO:0006383;transcription from RNA polymerase III promoter;0.00409918491127308!GO:0008047;enzyme activator activity;0.0041100422505664!GO:0006402;mRNA catabolic process;0.00416052596651358!GO:0003746;translation elongation factor activity;0.00433578484260544!GO:0051168;nuclear export;0.00434423612491533!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00435049414558188!GO:0015002;heme-copper terminal oxidase activity;0.00435049414558188!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00435049414558188!GO:0004129;cytochrome-c oxidase activity;0.00435049414558188!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00447552401383585!GO:0022890;inorganic cation transmembrane transporter activity;0.00448858970231448!GO:0008033;tRNA processing;0.00462793558877561!GO:0030127;COPII vesicle coat;0.00477201668510152!GO:0012507;ER to Golgi transport vesicle membrane;0.00477201668510152!GO:0031902;late endosome membrane;0.00477201668510152!GO:0051087;chaperone binding;0.00477201668510152!GO:0007006;mitochondrial membrane organization and biogenesis;0.00526989616619236!GO:0007050;cell cycle arrest;0.00530656336551461!GO:0000082;G1/S transition of mitotic cell cycle;0.00554766642500367!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00556143448452743!GO:0045047;protein targeting to ER;0.00556143448452743!GO:0048487;beta-tubulin binding;0.00557194190570003!GO:0004004;ATP-dependent RNA helicase activity;0.00570002911669002!GO:0065007;biological regulation;0.0058777213399996!GO:0006740;NADPH regeneration;0.00595068166879423!GO:0006098;pentose-phosphate shunt;0.00595068166879423!GO:0000279;M phase;0.00627232971503807!GO:0006352;transcription initiation;0.00630957114353846!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00643838538798805!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00660920781491308!GO:0007033;vacuole organization and biogenesis;0.00662873057948291!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00667109635617782!GO:0044433;cytoplasmic vesicle part;0.00688218755284633!GO:0051287;NAD binding;0.00699828513883462!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00724997743346383!GO:0003690;double-stranded DNA binding;0.0072814459883999!GO:0016860;intramolecular oxidoreductase activity;0.00759121949412716!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00764445728904783!GO:0030029;actin filament-based process;0.00768970389580276!GO:0030658;transport vesicle membrane;0.00785273545300927!GO:0008312;7S RNA binding;0.00786215002447909!GO:0030145;manganese ion binding;0.00787705385017971!GO:0000096;sulfur amino acid metabolic process;0.00787705385017971!GO:0051325;interphase;0.00799261833710043!GO:0012506;vesicle membrane;0.00858702988783197!GO:0017166;vinculin binding;0.00873372083237921!GO:0030041;actin filament polymerization;0.00884334709245528!GO:0000049;tRNA binding;0.00886331685943284!GO:0007010;cytoskeleton organization and biogenesis;0.00890182596613869!GO:0006520;amino acid metabolic process;0.0089779511446768!GO:0005586;collagen type III;0.00900677709301611!GO:0031543;peptidyl-proline dioxygenase activity;0.00934723406001085!GO:0030880;RNA polymerase complex;0.00934723406001085!GO:0050662;coenzyme binding;0.00934723406001085!GO:0043433;negative regulation of transcription factor activity;0.00941990556600559!GO:0005684;U2-dependent spliceosome;0.00989593476842433!GO:0043492;ATPase activity, coupled to movement of substances;0.0100399392823575!GO:0009112;nucleobase metabolic process;0.0100967219478321!GO:0008139;nuclear localization sequence binding;0.0102047508341495!GO:0019798;procollagen-proline dioxygenase activity;0.0102904502530274!GO:0006650;glycerophospholipid metabolic process;0.0103928040418169!GO:0006595;polyamine metabolic process;0.0104109458831895!GO:0005869;dynactin complex;0.0107071925385738!GO:0001726;ruffle;0.0107417970349494!GO:0016408;C-acyltransferase activity;0.010816384994055!GO:0006778;porphyrin metabolic process;0.0109189135307014!GO:0033013;tetrapyrrole metabolic process;0.0109189135307014!GO:0009967;positive regulation of signal transduction;0.0110161427637919!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0112769849353102!GO:0016251;general RNA polymerase II transcription factor activity;0.0112858728706156!GO:0006401;RNA catabolic process;0.0115454686323411!GO:0030521;androgen receptor signaling pathway;0.0117577377943088!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0118946957969935!GO:0030503;regulation of cell redox homeostasis;0.0119424007221418!GO:0030118;clathrin coat;0.0119806767766173!GO:0006509;membrane protein ectodomain proteolysis;0.0124124927478467!GO:0033619;membrane protein proteolysis;0.0124124927478467!GO:0031418;L-ascorbic acid binding;0.0126016766546124!GO:0006892;post-Golgi vesicle-mediated transport;0.0127678916112544!GO:0005774;vacuolar membrane;0.0130283189380643!GO:0006790;sulfur metabolic process;0.0132334566510238!GO:0043022;ribosome binding;0.0140272593676496!GO:0000059;protein import into nucleus, docking;0.0143898256245017!GO:0005862;muscle thin filament tropomyosin;0.0144600312878644!GO:0005096;GTPase activator activity;0.0144600312878644!GO:0015631;tubulin binding;0.0147531545407819!GO:0032984;macromolecular complex disassembly;0.0150567333739336!GO:0044452;nucleolar part;0.0152130332073275!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0152248287700499!GO:0006643;membrane lipid metabolic process;0.0152756112888245!GO:0000339;RNA cap binding;0.0153697824288231!GO:0006118;electron transport;0.0155443889509324!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0155501385675118!GO:0006984;ER-nuclear signaling pathway;0.0155881134596862!GO:0006497;protein amino acid lipidation;0.0156460548593522!GO:0016272;prefoldin complex;0.0158659509399529!GO:0065009;regulation of a molecular function;0.0159719418973269!GO:0006739;NADP metabolic process;0.0163143191882822!GO:0045792;negative regulation of cell size;0.0172827434174656!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0173926122624659!GO:0051539;4 iron, 4 sulfur cluster binding;0.0175024131938547!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0178937087306408!GO:0000428;DNA-directed RNA polymerase complex;0.0178937087306408!GO:0031625;ubiquitin protein ligase binding;0.0178937087306408!GO:0048037;cofactor binding;0.0179705107975792!GO:0008632;apoptotic program;0.017973372827523!GO:0051101;regulation of DNA binding;0.0180052527987521!GO:0003684;damaged DNA binding;0.0187652877939918!GO:0050811;GABA receptor binding;0.0188027707700782!GO:0006950;response to stress;0.0188371478869385!GO:0003711;transcription elongation regulator activity;0.0189401180652201!GO:0048518;positive regulation of biological process;0.0189702233047452!GO:0005669;transcription factor TFIID complex;0.0189702233047452!GO:0042168;heme metabolic process;0.0190790246196539!GO:0022408;negative regulation of cell-cell adhesion;0.0193124546836543!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0193124546836543!GO:0030660;Golgi-associated vesicle membrane;0.0195909020966279!GO:0043624;cellular protein complex disassembly;0.019805759859057!GO:0030308;negative regulation of cell growth;0.0200630223563323!GO:0007030;Golgi organization and biogenesis;0.0208151780902233!GO:0045893;positive regulation of transcription, DNA-dependent;0.0208357301520002!GO:0022406;membrane docking;0.0211056305124504!GO:0048278;vesicle docking;0.0211056305124504!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0215417699211204!GO:0006672;ceramide metabolic process;0.0216847211170784!GO:0015036;disulfide oxidoreductase activity;0.0217731551062811!GO:0005583;fibrillar collagen;0.0218673609054094!GO:0031901;early endosome membrane;0.0218866737858524!GO:0031529;ruffle organization and biogenesis;0.0219214796773594!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0219214796773594!GO:0030518;steroid hormone receptor signaling pathway;0.0220077883995999!GO:0005832;chaperonin-containing T-complex;0.0220077883995999!GO:0006749;glutathione metabolic process;0.0220476486782815!GO:0003756;protein disulfide isomerase activity;0.0220476486782815!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0220476486782815!GO:0045936;negative regulation of phosphate metabolic process;0.0222854336499803!GO:0016125;sterol metabolic process;0.0224351483795151!GO:0008154;actin polymerization and/or depolymerization;0.0227684749812215!GO:0035035;histone acetyltransferase binding;0.0230382846033913!GO:0007034;vacuolar transport;0.0233969592639903!GO:0035258;steroid hormone receptor binding;0.0241880000510945!GO:0043241;protein complex disassembly;0.0243212596813799!GO:0000209;protein polyubiquitination;0.0244132532072067!GO:0045941;positive regulation of transcription;0.0246730647316093!GO:0006354;RNA elongation;0.0247770783581927!GO:0008652;amino acid biosynthetic process;0.024985326883635!GO:0030032;lamellipodium biogenesis;0.0250880810836019!GO:0040008;regulation of growth;0.0251005858846503!GO:0006779;porphyrin biosynthetic process;0.0251005858846503!GO:0033014;tetrapyrrole biosynthetic process;0.0251005858846503!GO:0046519;sphingoid metabolic process;0.0253195888556844!GO:0006767;water-soluble vitamin metabolic process;0.0257929979615887!GO:0006506;GPI anchor biosynthetic process;0.0259569680904682!GO:0006807;nitrogen compound metabolic process;0.0259817932428942!GO:0045892;negative regulation of transcription, DNA-dependent;0.0263921382627417!GO:0030384;phosphoinositide metabolic process;0.0266812103936271!GO:0005637;nuclear inner membrane;0.0267492793899815!GO:0051128;regulation of cellular component organization and biogenesis;0.0267859722438564!GO:0006007;glucose catabolic process;0.026937454276523!GO:0007021;tubulin folding;0.0273078725386263!GO:0006904;vesicle docking during exocytosis;0.0278848271308587!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0281774036641035!GO:0042158;lipoprotein biosynthetic process;0.0284141867212067!GO:0006769;nicotinamide metabolic process;0.0285251558506507!GO:0033673;negative regulation of kinase activity;0.0285251558506507!GO:0006469;negative regulation of protein kinase activity;0.0285251558506507!GO:0044437;vacuolar part;0.029160003500786!GO:0044255;cellular lipid metabolic process;0.0292702493267825!GO:0051052;regulation of DNA metabolic process;0.0298568465681993!GO:0006733;oxidoreduction coenzyme metabolic process;0.0298615244474132!GO:0006261;DNA-dependent DNA replication;0.0298615244474132!GO:0030508;thiol-disulfide exchange intermediate activity;0.0313215964338778!GO:0005765;lysosomal membrane;0.031770250245116!GO:0044420;extracellular matrix part;0.0317897838449983!GO:0004674;protein serine/threonine kinase activity;0.0320481133059188!GO:0009081;branched chain family amino acid metabolic process;0.0320517645421073!GO:0030833;regulation of actin filament polymerization;0.0320517645421073!GO:0003678;DNA helicase activity;0.0320911192159802!GO:0006720;isoprenoid metabolic process;0.0321323668589522!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0325994751524934!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.033557842298303!GO:0047485;protein N-terminus binding;0.033557842298303!GO:0032940;secretion by cell;0.033557842298303!GO:0006505;GPI anchor metabolic process;0.0339861204151801!GO:0006289;nucleotide-excision repair;0.0343035845608348!GO:0051348;negative regulation of transferase activity;0.0358829071719389!GO:0046426;negative regulation of JAK-STAT cascade;0.0360179422921151!GO:0033559;unsaturated fatty acid metabolic process;0.0362680916296411!GO:0006636;unsaturated fatty acid biosynthetic process;0.0362680916296411!GO:0006376;mRNA splice site selection;0.0366297346444889!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0366297346444889!GO:0008320;protein transmembrane transporter activity;0.0366297346444889!GO:0009308;amine metabolic process;0.0366297346444889!GO:0051098;regulation of binding;0.0367346366916202!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0369096895371716!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0370481357883334!GO:0003923;GPI-anchor transamidase activity;0.0370557567908151!GO:0016255;attachment of GPI anchor to protein;0.0370557567908151!GO:0042765;GPI-anchor transamidase complex;0.0370557567908151!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0379301796704067!GO:0005801;cis-Golgi network;0.0379360957859873!GO:0005099;Ras GTPase activator activity;0.0387020119078456!GO:0000786;nucleosome;0.0390271082330404!GO:0008538;proteasome activator activity;0.0391980717160847!GO:0030119;AP-type membrane coat adaptor complex;0.0397718301751332!GO:0016584;nucleosome positioning;0.0398867332314021!GO:0031371;ubiquitin conjugating enzyme complex;0.0399259616021011!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0402322608221216!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0402322608221216!GO:0005758;mitochondrial intermembrane space;0.0405996905250318!GO:0001516;prostaglandin biosynthetic process;0.0408637926274144!GO:0046457;prostanoid biosynthetic process;0.0408637926274144!GO:0006338;chromatin remodeling;0.0415796940039962!GO:0050681;androgen receptor binding;0.0416750706152968!GO:0030911;TPR domain binding;0.0417550180388182!GO:0006783;heme biosynthetic process;0.0419929051739975!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0424105124555101!GO:0031124;mRNA 3'-end processing;0.0426084517831195!GO:0001953;negative regulation of cell-matrix adhesion;0.0426084517831195!GO:0006144;purine base metabolic process;0.0426426524800784!GO:0042670;retinal cone cell differentiation;0.0429797082333401!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0429797082333401!GO:0046549;retinal cone cell development;0.0429797082333401!GO:0008243;plasminogen activator activity;0.0429952759390905!GO:0008147;structural constituent of bone;0.0434366529712065!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0435650694324704!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0436046671102983!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0437091288691539!GO:0007041;lysosomal transport;0.0440043463885745!GO:0008629;induction of apoptosis by intracellular signals;0.0440043463885745!GO:0030433;ER-associated protein catabolic process;0.0440043463885745!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0440043463885745!GO:0004722;protein serine/threonine phosphatase activity;0.04429267433011!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0457265814545128!GO:0006607;NLS-bearing substrate import into nucleus;0.0458892527091431!GO:0000287;magnesium ion binding;0.0462166010027501!GO:0008234;cysteine-type peptidase activity;0.0462603624546013!GO:0042326;negative regulation of phosphorylation;0.0467497119089827!GO:0007179;transforming growth factor beta receptor signaling pathway;0.04692464517356!GO:0006302;double-strand break repair;0.047023622978753!GO:0050178;phenylpyruvate tautomerase activity;0.0470721398883506!GO:0008287;protein serine/threonine phosphatase complex;0.0472939186179769!GO:0004860;protein kinase inhibitor activity;0.0474965054023312!GO:0031301;integral to organelle membrane;0.0478359031783668!GO:0048468;cell development;0.047887390601314!GO:0051540;metal cluster binding;0.0484879578119665!GO:0051536;iron-sulfur cluster binding;0.0484879578119665!GO:0000075;cell cycle checkpoint;0.04865056078811!GO:0006458;'de novo' protein folding;0.04865056078811!GO:0051084;'de novo' posttranslational protein folding;0.04865056078811!GO:0032981;mitochondrial respiratory chain complex I assembly;0.04865056078811!GO:0010257;NADH dehydrogenase complex assembly;0.04865056078811!GO:0033108;mitochondrial respiratory chain complex assembly;0.04865056078811!GO:0022884;macromolecule transmembrane transporter activity;0.0489031489418976!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0489031489418976!GO:0001952;regulation of cell-matrix adhesion;0.0491820944454664!GO:0022415;viral reproductive process;0.0496182174890996!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0499898131899234 | |||
|sample_id=11335 | |sample_id=11335 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=prostate | |sample_tissue=prostate | ||
|top_motifs=TAL1_TCF{3,4,12}:2.58033047666;ALX4:2.31844858469;NKX3-1:1.83942716071;UFEwm:1.83517074604;MYBL2:1.81363812252;ESR1:1.69852742954;KLF4:1.40847075638;TEF:1.37949445114;AIRE:1.36478375992;TOPORS:1.25415858824;PAX1,9:1.23478024008;ZNF238:1.14495926916;NFE2L1:1.1395906409;EN1,2:1.10246565383;XBP1:1.09947956046;GZF1:1.08301103293;TFAP4:1.07258533406;NKX2-2,8:1.06152020016;HOX{A4,D4}:1.03815359903;RXR{A,B,G}:1.00167448684;HSF1,2:0.993400793003;LHX3,4:0.978559958621;EVI1:0.968617710298;HMGA1,2:0.947149440176;EBF1:0.944718340457;PATZ1:0.939699334055;GLI1..3:0.91508733092;TEAD1:0.860347908862;ZNF423:0.842881106242;GFI1B:0.826163704395;IKZF1:0.811511590273;NKX6-1,2:0.766109998449;HES1:0.763618185373;SPZ1:0.74861313684;YY1:0.740433530532;CDC5L:0.716247507608;MAFB:0.704307457651;MYFfamily:0.691396184104;NANOG{mouse}:0.685123713616;NFIX:0.666850052584;HOX{A5,B5}:0.633792935258;ATF6:0.628252019298;NR6A1:0.626372643699;ZNF384:0.622594147325;GTF2A1,2:0.619780693344;DBP:0.612842949459;TLX1..3_NFIC{dimer}:0.610034759745;FOXL1:0.581809007559;NFE2L2:0.543472818338;GTF2I:0.535390992074;TBX4,5:0.517066826073;TP53:0.484738368174;NR3C1:0.472436268535;ZBTB6:0.456465470889;PPARG:0.450587290784;STAT5{A,B}:0.447983502147;PRDM1:0.445274691642;CRX:0.444632813287;PAX5:0.432232779636;ZIC1..3:0.421761634186;NR1H4:0.417245882376;bHLH_family:0.379204408747;TFCP2:0.369912209434;RXRA_VDR{dimer}:0.365592243366;TFAP2{A,C}:0.36182556607;HOXA9_MEIS1:0.333276273881;MZF1:0.311730838329;HLF:0.304573499682;MAZ:0.298191573448;FOXO1,3,4:0.296452247605;SRF:0.294030199635;GATA4:0.290730813594;HMX1:0.272545728933;PAX4:0.257985453822;ELK1,4_GABP{A,B1}:0.247427808288;MTE{core}:0.244230209198;NFATC1..3:0.21070968094;EGR1..3:0.207906355819;TBP:0.1902801934;CEBPA,B_DDIT3:0.188866770319;HAND1,2:0.173157909125;HIC1:0.170650476183;NHLH1,2:0.169758365929;NR5A1,2:0.157976933856;RREB1:0.0993290650648;MTF1:0.0647089329435;TFAP2B:0.0632534618022;CDX1,2,4:0.0503087951243;FOXQ1:0.0442070741659;FOX{I1,J2}:0.0305514924133;STAT2,4,6:0.0295748333907;SOX17:0.029518275306;PITX1..3:0.0235865465768;FOXD3:0.00794990449228;HNF1A:-0.00951355011313;HNF4A_NR2F1,2:-0.01116146078;XCPE1{core}:-0.0156849974501;ZNF143:-0.0491973869151;NRF1:-0.0703185504146;FOXP3:-0.0741108375139;ZBTB16:-0.102473142092;FOXP1:-0.116387074737;PBX1:-0.126879523218;RFX1:-0.147291529566;AHR_ARNT_ARNT2:-0.14934454225;MYB:-0.150261417152;ESRRA:-0.154030938906;TLX2:-0.168565587186;ONECUT1,2:-0.173818969667;PAX6:-0.182391433992;T:-0.182399025855;POU3F1..4:-0.185866222904;NKX3-2:-0.189027780591;REST:-0.197754518627;IRF1,2:-0.202129026289;BACH2:-0.203727055968;DMAP1_NCOR{1,2}_SMARC:-0.210316782083;HIF1A:-0.211719002782;PAX8:-0.226371996884;LMO2:-0.23857820094;NFE2:-0.239340292937;STAT1,3:-0.243570063945;MED-1{core}:-0.247087253555;ZNF148:-0.247394443742;RFX2..5_RFXANK_RFXAP:-0.286123703634;SOX5:-0.341563307172;IRF7:-0.34660054522;HOX{A6,A7,B6,B7}:-0.347542106079;SREBF1,2:-0.37395457512;SMAD1..7,9:-0.376662103599;ZFP161:-0.376918169249;FOS_FOS{B,L1}_JUN{B,D}:-0.3812406382;FOX{D1,D2}:-0.38920754225;CREB1:-0.39018628956;GCM1,2:-0.390342131862;POU6F1:-0.398946582261;FOXM1:-0.404378082442;NFKB1_REL_RELA:-0.41481052921;GFI1:-0.419531695169;ATF2:-0.423009516418;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.436019400335;POU5F1:-0.443764308903;ARID5B:-0.444196651004;SP1:-0.473408571121;RUNX1..3:-0.493287431014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.518734575674;FOSL2:-0.522159664961;AR:-0.532259594569;E2F1..5:-0.544133803866;NFY{A,B,C}:-0.548439496768;TFDP1:-0.567825758245;ELF1,2,4:-0.574854710223;SPI1:-0.592170973424;PRRX1,2:-0.603014161662;ATF4:-0.617950581465;ATF5_CREB3:-0.620400547709;BPTF:-0.626741242917;CUX2:-0.635248157174;SPIB:-0.639263696575;LEF1_TCF7_TCF7L1,2:-0.642608511856;PAX3,7:-0.675768863168;ETS1,2:-0.703633316735;NKX2-3_NKX2-5:-0.704937162621;POU1F1:-0.709994238955;JUN:-0.711911940221;PAX2:-0.730572064674;TGIF1:-0.741366916386;SOX2:-0.775087597847;FOXA2:-0.785600373501;PDX1:-0.793927095963;SNAI1..3:-0.799793980817;FOX{F1,F2,J1}:-0.800024943082;ADNP_IRX_SIX_ZHX:-0.830068020351;GATA6:-0.839674455445;VSX1,2:-0.85629317266;NFIL3:-0.858182645821;ALX1:-0.8582121865;MEF2{A,B,C,D}:-0.870422168456;FOXN1:-0.879810110812;MYOD1:-0.906227683799;SOX{8,9,10}:-0.944119081566;IKZF2:-0.959146650738;ZEB1:-0.967927412369;BREu{core}:-0.987383293665;OCT4_SOX2{dimer}:-0.991015777718;NKX2-1,4:-1.08440639007;EP300:-1.12095861382;POU2F1..3:-1.3519623;RBPJ:-1.41283354908;RORA:-1.4386252608;NANOG:-1.67129160921;HBP1_HMGB_SSRP1_UBTF:-2.01044005743 | |top_motifs=TAL1_TCF{3,4,12}:2.58033047666;ALX4:2.31844858469;NKX3-1:1.83942716071;UFEwm:1.83517074604;MYBL2:1.81363812252;ESR1:1.69852742954;KLF4:1.40847075638;TEF:1.37949445114;AIRE:1.36478375992;TOPORS:1.25415858824;PAX1,9:1.23478024008;ZNF238:1.14495926916;NFE2L1:1.1395906409;EN1,2:1.10246565383;XBP1:1.09947956046;GZF1:1.08301103293;TFAP4:1.07258533406;NKX2-2,8:1.06152020016;HOX{A4,D4}:1.03815359903;RXR{A,B,G}:1.00167448684;HSF1,2:0.993400793003;LHX3,4:0.978559958621;EVI1:0.968617710298;HMGA1,2:0.947149440176;EBF1:0.944718340457;PATZ1:0.939699334055;GLI1..3:0.91508733092;TEAD1:0.860347908862;ZNF423:0.842881106242;GFI1B:0.826163704395;IKZF1:0.811511590273;NKX6-1,2:0.766109998449;HES1:0.763618185373;SPZ1:0.74861313684;YY1:0.740433530532;CDC5L:0.716247507608;MAFB:0.704307457651;MYFfamily:0.691396184104;NANOG{mouse}:0.685123713616;NFIX:0.666850052584;HOX{A5,B5}:0.633792935258;ATF6:0.628252019298;NR6A1:0.626372643699;ZNF384:0.622594147325;GTF2A1,2:0.619780693344;DBP:0.612842949459;TLX1..3_NFIC{dimer}:0.610034759745;FOXL1:0.581809007559;NFE2L2:0.543472818338;GTF2I:0.535390992074;TBX4,5:0.517066826073;TP53:0.484738368174;NR3C1:0.472436268535;ZBTB6:0.456465470889;PPARG:0.450587290784;STAT5{A,B}:0.447983502147;PRDM1:0.445274691642;CRX:0.444632813287;PAX5:0.432232779636;ZIC1..3:0.421761634186;NR1H4:0.417245882376;bHLH_family:0.379204408747;TFCP2:0.369912209434;RXRA_VDR{dimer}:0.365592243366;TFAP2{A,C}:0.36182556607;HOXA9_MEIS1:0.333276273881;MZF1:0.311730838329;HLF:0.304573499682;MAZ:0.298191573448;FOXO1,3,4:0.296452247605;SRF:0.294030199635;GATA4:0.290730813594;HMX1:0.272545728933;PAX4:0.257985453822;ELK1,4_GABP{A,B1}:0.247427808288;MTE{core}:0.244230209198;NFATC1..3:0.21070968094;EGR1..3:0.207906355819;TBP:0.1902801934;CEBPA,B_DDIT3:0.188866770319;HAND1,2:0.173157909125;HIC1:0.170650476183;NHLH1,2:0.169758365929;NR5A1,2:0.157976933856;RREB1:0.0993290650648;MTF1:0.0647089329435;TFAP2B:0.0632534618022;CDX1,2,4:0.0503087951243;FOXQ1:0.0442070741659;FOX{I1,J2}:0.0305514924133;STAT2,4,6:0.0295748333907;SOX17:0.029518275306;PITX1..3:0.0235865465768;FOXD3:0.00794990449228;HNF1A:-0.00951355011313;HNF4A_NR2F1,2:-0.01116146078;XCPE1{core}:-0.0156849974501;ZNF143:-0.0491973869151;NRF1:-0.0703185504146;FOXP3:-0.0741108375139;ZBTB16:-0.102473142092;FOXP1:-0.116387074737;PBX1:-0.126879523218;RFX1:-0.147291529566;AHR_ARNT_ARNT2:-0.14934454225;MYB:-0.150261417152;ESRRA:-0.154030938906;TLX2:-0.168565587186;ONECUT1,2:-0.173818969667;PAX6:-0.182391433992;T:-0.182399025855;POU3F1..4:-0.185866222904;NKX3-2:-0.189027780591;REST:-0.197754518627;IRF1,2:-0.202129026289;BACH2:-0.203727055968;DMAP1_NCOR{1,2}_SMARC:-0.210316782083;HIF1A:-0.211719002782;PAX8:-0.226371996884;LMO2:-0.23857820094;NFE2:-0.239340292937;STAT1,3:-0.243570063945;MED-1{core}:-0.247087253555;ZNF148:-0.247394443742;RFX2..5_RFXANK_RFXAP:-0.286123703634;SOX5:-0.341563307172;IRF7:-0.34660054522;HOX{A6,A7,B6,B7}:-0.347542106079;SREBF1,2:-0.37395457512;SMAD1..7,9:-0.376662103599;ZFP161:-0.376918169249;FOS_FOS{B,L1}_JUN{B,D}:-0.3812406382;FOX{D1,D2}:-0.38920754225;CREB1:-0.39018628956;GCM1,2:-0.390342131862;POU6F1:-0.398946582261;FOXM1:-0.404378082442;NFKB1_REL_RELA:-0.41481052921;GFI1:-0.419531695169;ATF2:-0.423009516418;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.436019400335;POU5F1:-0.443764308903;ARID5B:-0.444196651004;SP1:-0.473408571121;RUNX1..3:-0.493287431014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.518734575674;FOSL2:-0.522159664961;AR:-0.532259594569;E2F1..5:-0.544133803866;NFY{A,B,C}:-0.548439496768;TFDP1:-0.567825758245;ELF1,2,4:-0.574854710223;SPI1:-0.592170973424;PRRX1,2:-0.603014161662;ATF4:-0.617950581465;ATF5_CREB3:-0.620400547709;BPTF:-0.626741242917;CUX2:-0.635248157174;SPIB:-0.639263696575;LEF1_TCF7_TCF7L1,2:-0.642608511856;PAX3,7:-0.675768863168;ETS1,2:-0.703633316735;NKX2-3_NKX2-5:-0.704937162621;POU1F1:-0.709994238955;JUN:-0.711911940221;PAX2:-0.730572064674;TGIF1:-0.741366916386;SOX2:-0.775087597847;FOXA2:-0.785600373501;PDX1:-0.793927095963;SNAI1..3:-0.799793980817;FOX{F1,F2,J1}:-0.800024943082;ADNP_IRX_SIX_ZHX:-0.830068020351;GATA6:-0.839674455445;VSX1,2:-0.85629317266;NFIL3:-0.858182645821;ALX1:-0.8582121865;MEF2{A,B,C,D}:-0.870422168456;FOXN1:-0.879810110812;MYOD1:-0.906227683799;SOX{8,9,10}:-0.944119081566;IKZF2:-0.959146650738;ZEB1:-0.967927412369;BREu{core}:-0.987383293665;OCT4_SOX2{dimer}:-0.991015777718;NKX2-1,4:-1.08440639007;EP300:-1.12095861382;POU2F1..3:-1.3519623;RBPJ:-1.41283354908;RORA:-1.4386252608;NANOG:-1.67129160921;HBP1_HMGB_SSRP1_UBTF:-2.01044005743 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11335-117F3;search_select_hide=table117:FF:11335-117F3 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Smooth Muscle Cells - Prostate, donor2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11976 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11976
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11976
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.654 |
| 10 | 10 | 0.52 |
| 100 | 100 | 0.0671 |
| 101 | 101 | 0.482 |
| 102 | 102 | 0.287 |
| 103 | 103 | 0.696 |
| 104 | 104 | 0.876 |
| 105 | 105 | 0.0187 |
| 106 | 106 | 0.698 |
| 107 | 107 | 0.39 |
| 108 | 108 | 0.4 |
| 109 | 109 | 0.556 |
| 11 | 11 | 0.431 |
| 110 | 110 | 0.384 |
| 111 | 111 | 0.712 |
| 112 | 112 | 0.402 |
| 113 | 113 | 0.0293 |
| 114 | 114 | 0.483 |
| 115 | 115 | 0.00116 |
| 116 | 116 | 0.0214 |
| 117 | 117 | 0.517 |
| 118 | 118 | 0.837 |
| 119 | 119 | 0.393 |
| 12 | 12 | 0.187 |
| 120 | 120 | 0.206 |
| 121 | 121 | 0.0666 |
| 122 | 122 | 0.00341 |
| 123 | 123 | 0.319 |
| 124 | 124 | 0.271 |
| 125 | 125 | 0.247 |
| 126 | 126 | 0.738 |
| 127 | 127 | 0.177 |
| 128 | 128 | 0.185 |
| 129 | 129 | 0.112 |
| 13 | 13 | 0.965 |
| 130 | 130 | 0.917 |
| 131 | 131 | 0.322 |
| 132 | 132 | 0.378 |
| 133 | 133 | 0.809 |
| 134 | 134 | 0.891 |
| 135 | 135 | 0.943 |
| 136 | 136 | 0.0925 |
| 137 | 137 | 0.0638 |
| 138 | 138 | 0.939 |
| 139 | 139 | 0.0881 |
| 14 | 14 | 0.171 |
| 140 | 140 | 0.998 |
| 141 | 141 | 0.598 |
| 142 | 142 | 0.957 |
| 143 | 143 | 0.884 |
| 144 | 144 | 0.182 |
| 145 | 145 | 0.31 |
| 146 | 146 | 0.482 |
| 147 | 147 | 0.583 |
| 148 | 148 | 0.672 |
| 149 | 149 | 0.0116 |
| 15 | 15 | 0.239 |
| 150 | 150 | 0.287 |
| 151 | 151 | 0.558 |
| 152 | 152 | 0.0185 |
| 153 | 153 | 0.382 |
| 154 | 154 | 0.985 |
| 155 | 155 | 0.0836 |
| 156 | 156 | 0.319 |
| 157 | 157 | 0.184 |
| 158 | 158 | 0.0125 |
| 159 | 159 | 0.577 |
| 16 | 16 | 0.0376 |
| 160 | 160 | 0.929 |
| 161 | 161 | 0.671 |
| 162 | 162 | 0.47 |
| 163 | 163 | 0.729 |
| 164 | 164 | 0.00584 |
| 165 | 165 | 0.729 |
| 166 | 166 | 0.112 |
| 167 | 167 | 0.744 |
| 168 | 168 | 0.544 |
| 169 | 169 | 0.0257 |
| 17 | 17 | 0.942 |
| 18 | 18 | 0.318 |
| 19 | 19 | 0.00648 |
| 2 | 2 | 0.328 |
| 20 | 20 | 0.635 |
| 21 | 21 | 0.134 |
| 22 | 22 | 0.278 |
| 23 | 23 | 0.919 |
| 24 | 24 | 0.346 |
| 25 | 25 | 0.0561 |
| 26 | 26 | 0.296 |
| 27 | 27 | 0.887 |
| 28 | 28 | 0.0914 |
| 29 | 29 | 0.306 |
| 3 | 3 | 0.516 |
| 30 | 30 | 0.939 |
| 31 | 31 | 0.738 |
| 32 | 32 | 4.51469e-18 |
| 33 | 33 | 0.657 |
| 34 | 34 | 0.881 |
| 35 | 35 | 0.402 |
| 36 | 36 | 0.0506 |
| 37 | 37 | 0.0385 |
| 38 | 38 | 0.193 |
| 39 | 39 | 0.519 |
| 4 | 4 | 0.118 |
| 40 | 40 | 0.235 |
| 41 | 41 | 0.0901 |
| 42 | 42 | 0.57 |
| 43 | 43 | 0.936 |
| 44 | 44 | 0.109 |
| 45 | 45 | 0.384 |
| 46 | 46 | 0.509 |
| 47 | 47 | 0.606 |
| 48 | 48 | 0.89 |
| 49 | 49 | 0.359 |
| 5 | 5 | 0.588 |
| 50 | 50 | 0.794 |
| 51 | 51 | 0.666 |
| 52 | 52 | 0.94 |
| 53 | 53 | 0.312 |
| 54 | 54 | 0.701 |
| 55 | 55 | 0.624 |
| 56 | 56 | 0.94 |
| 57 | 57 | 0.932 |
| 58 | 58 | 0.228 |
| 59 | 59 | 0.169 |
| 6 | 6 | 0.594 |
| 60 | 60 | 0.657 |
| 61 | 61 | 0.664 |
| 62 | 62 | 0.617 |
| 63 | 63 | 0.522 |
| 64 | 64 | 0.68 |
| 65 | 65 | 0.998 |
| 66 | 66 | 0.2 |
| 67 | 67 | 0.757 |
| 68 | 68 | 0.818 |
| 69 | 69 | 0.997 |
| 7 | 7 | 0.0755 |
| 70 | 70 | 0.942 |
| 71 | 71 | 0.173 |
| 72 | 72 | 0.517 |
| 73 | 73 | 0.00413 |
| 74 | 74 | 0.0785 |
| 75 | 75 | 0.373 |
| 76 | 76 | 0.823 |
| 77 | 77 | 0.244 |
| 78 | 78 | 0.208 |
| 79 | 79 | 0.00235 |
| 8 | 8 | 0.123 |
| 80 | 80 | 0.0131 |
| 81 | 81 | 0.879 |
| 82 | 82 | 0.383 |
| 83 | 83 | 0.255 |
| 84 | 84 | 0.75 |
| 85 | 85 | 0.416 |
| 86 | 86 | 0.215 |
| 87 | 87 | 0.0821 |
| 88 | 88 | 0.608 |
| 89 | 89 | 0.2 |
| 9 | 9 | 0.956 |
| 90 | 90 | 0.597 |
| 91 | 91 | 0.634 |
| 92 | 92 | 0.392 |
| 93 | 93 | 0.314 |
| 94 | 94 | 0.732 |
| 95 | 95 | 0.1 |
| 96 | 96 | 0.37 |
| 97 | 97 | 0.84 |
| 98 | 98 | 0.381 |
| 99 | 99 | 0.00175 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11976
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000183 human smooth muscle cell of prostate sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
1000487 (smooth muscle cell of prostate)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000183 (human smooth muscle cell of prostate sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
