FF:11346-117G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005260 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005260 | ||
|accession_numbers=CAGE;DRX008255;DRR009127;DRZ000552;DRZ001937;DRZ011902;DRZ013287 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037214;DRR041580;DRZ007222 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.88!2122.16!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.53!103.26!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.34!TWIST2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.10!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!31.95!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.38!62.18!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.67!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.36!28.52!SOX18;;chr8:25902876..25902936,-!p1@EBF2!1.32!19.97!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.26!47.35!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!1.25!29.09!DRAP1;;chr21:39870339..39870443,-!p1@ERG!1.21!15.40!ERG;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.69!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.15!14.83!TCF4;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.26!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.55!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.12!20.54!TCF12;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.98!RFX8;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.93!FOSL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.69!TFAP2C;;chr17:59477233..59477263,+!p1@TBX2!1.06!33.09!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.05!46.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.95!HMGA2;;chr17:6926362..6926377,+!p1@BCL6B!1.05!10.27!BCL6B;;chr11:65667846..65667868,-!p1@FOSL1!1.04!266.41!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.64!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.41!ZBTB38;;chr6:34204973..34204990,+!p4@HMGA1!0.98!116.38!HMGA1;;chr8:128748308..128748324,+!p2@MYC!0.97!235.03!MYC;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.11!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.84!PRRX2;;chr1:170632439..170632465,+!p11@PRRX1!0.93!7.42!PRRX1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.42!HES2;;chr15:83953397..83953425,-!p1@BNC1!0.90!7.99!BNC1;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.27!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.89!6.85!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!0.89!6.85!SOX7;;chr12:96588368..96588394,+!p3@ELK3!0.88!18.26!ELK3;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.40!NR1H3;;chr17:41622765..41622821,-!p2@ETV4!0.88!10.27!ETV4;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.27!ZBTB38;;chr3:12330560..12330579,+!p1@PPARG!0.87!7.42!PPARG;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.28!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.86!6.28!RUNX1T1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.23!RARG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.76!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.70!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.70!PRRX2;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.42!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!656.61!HMGA1;;chr11:65686952..65686975,+!p5@DRAP1!0.79!30.81!DRAP1;;chr19:13213511..13213545,-!p2@LYL1!0.79!5.70!LYL1;;chr1:170632959..170632987,+!p4@PRRX1!0.79!5.70!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.79!5.13!TBX20;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.85!PRDM8;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.96!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.39!TOX2;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.28!TBX2;;chr17:7493405..7493419,-!p1@SOX15!0.75!4.56!SOX15;;chr8:93074848..93074871,-!p3@RUNX1T1!0.75!4.56!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.56!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.56!PRRX1;;chr3:12329358..12329393,+!p3@PPARG!0.74!11.98!PPARG;;chr8:128747661..128747703,+!p6@MYC!0.74!6.28!MYC;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.28!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.13!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.56!GLIS1;;chr3:12329397..12329433,+!p2@PPARG!0.71!10.27!PPARG;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.99!ZFP106;;chr11:46299199..46299233,+!p1@CREB3L1!0.70!23.39!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.70!3.99!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.68!6.28!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.56!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.65!91.85!AEBP1;;chr16:4322832..4322907,-!p1@TFAP4!0.65!30.24!TFAP4;;chr11:47279248..47279264,+!p3@NR1H3!0.65!3.99!NR1H3;;chr5:2751785..2751808,-!p2@IRX2!0.65!3.42!IRX2;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.42!RFX8;;chr2:223163706..223163730,-!p1@PAX3!0.65!3.42!PAX3;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.42!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!0.65!3.42!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.65!3.42!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!0.64!11.41!ZHX3;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.97!PHB2;;chr5:321810..321877,+!p1@AHRR!0.63!11.98!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.85!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.70!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.63!5.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.13!SATB2;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.56!TOX2;;chr8:128747757..128747800,+!p7@MYC!0.62!4.56!MYC;;chr15:96869114..96869160,+!p11@NR2F2!0.62!4.56!NR2F2;;chr1:8938766..8938774,-!p2@ENO1!0.61!255.57!ENO1;;chr14:611161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| |expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.88!2122.16!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.53!103.26!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.34!TWIST2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.10!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!31.95!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.38!62.18!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.67!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.36!28.52!SOX18;;chr8:25902876..25902936,-!p1@EBF2!1.32!19.97!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.26!47.35!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!1.25!29.09!DRAP1;;chr21:39870339..39870443,-!p1@ERG!1.21!15.40!ERG;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.69!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.15!14.83!TCF4;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.26!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.55!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.12!20.54!TCF12;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.98!RFX8;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.93!FOSL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.69!TFAP2C;;chr17:59477233..59477263,+!p1@TBX2!1.06!33.09!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.05!46.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.95!HMGA2;;chr17:6926362..6926377,+!p1@BCL6B!1.05!10.27!BCL6B;;chr11:65667846..65667868,-!p1@FOSL1!1.04!266.41!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.64!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.41!ZBTB38;;chr6:34204973..34204990,+!p4@HMGA1!0.98!116.38!HMGA1;;chr8:128748308..128748324,+!p2@MYC!0.97!235.03!MYC;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.11!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.84!PRRX2;;chr1:170632439..170632465,+!p11@PRRX1!0.93!7.42!PRRX1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.42!HES2;;chr15:83953397..83953425,-!p1@BNC1!0.90!7.99!BNC1;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.27!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.89!6.85!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!0.89!6.85!SOX7;;chr12:96588368..96588394,+!p3@ELK3!0.88!18.26!ELK3;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.40!NR1H3;;chr17:41622765..41622821,-!p2@ETV4!0.88!10.27!ETV4;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.27!ZBTB38;;chr3:12330560..12330579,+!p1@PPARG!0.87!7.42!PPARG;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.28!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.86!6.28!RUNX1T1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.23!RARG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.76!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.70!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.70!PRRX2;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.42!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!656.61!HMGA1;;chr11:65686952..65686975,+!p5@DRAP1!0.79!30.81!DRAP1;;chr19:13213511..13213545,-!p2@LYL1!0.79!5.70!LYL1;;chr1:170632959..170632987,+!p4@PRRX1!0.79!5.70!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.79!5.13!TBX20;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.85!PRDM8;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.96!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.39!TOX2;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.28!TBX2;;chr17:7493405..7493419,-!p1@SOX15!0.75!4.56!SOX15;;chr8:93074848..93074871,-!p3@RUNX1T1!0.75!4.56!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.56!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.56!PRRX1;;chr3:12329358..12329393,+!p3@PPARG!0.74!11.98!PPARG;;chr8:128747661..128747703,+!p6@MYC!0.74!6.28!MYC;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.28!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.13!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.56!GLIS1;;chr3:12329397..12329433,+!p2@PPARG!0.71!10.27!PPARG;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.99!ZFP106;;chr11:46299199..46299233,+!p1@CREB3L1!0.70!23.39!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.70!3.99!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.68!6.28!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.56!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.65!91.85!AEBP1;;chr16:4322832..4322907,-!p1@TFAP4!0.65!30.24!TFAP4;;chr11:47279248..47279264,+!p3@NR1H3!0.65!3.99!NR1H3;;chr5:2751785..2751808,-!p2@IRX2!0.65!3.42!IRX2;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.42!RFX8;;chr2:223163706..223163730,-!p1@PAX3!0.65!3.42!PAX3;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.42!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!0.65!3.42!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.65!3.42!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!0.64!11.41!ZHX3;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.97!PHB2;;chr5:321810..321877,+!p1@AHRR!0.63!11.98!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.85!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.70!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.63!5.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.13!SATB2;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.56!TOX2;;chr8:128747757..128747800,+!p7@MYC!0.62!4.56!MYC;;chr15:96869114..96869160,+!p11@NR2F2!0.62!4.56!NR2F2;;chr1:8938766..8938774,-!p2@ENO1!0.61!255.57!ENO1;;chr14:611161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TA2!0.18!2.28!MTA2;;chr17:38256973..38256990,-!p5@NR1D1!0.18!2.28!NR1D1;;chr4:146402925..146402957,+!p4@SMAD1!0.18!2.28!SMAD1;;chr2:46524506..46524514,+!p5@EPAS1!0.18!1.71!EPAS1;;chr3:185826814..185826825,-!p3@ETV5!0.18!1.71!ETV5;;chr2:174830540..174830563,-!p8@SP3!0.18!1.14!SP3;;chr3:25469724..25469773,+!p1@RARB!0.18!1.14!RARB;;chr1:61547811..61547837,+!p7@NFIA!0.18!1.14!NFIA;;chr20:48807648..48807671,+!p9@CEBPB!0.18!1.14!CEBPB;;chr8:128752771..128752843,+!p9@MYC!0.18!1.14!MYC;;chr8:80679993..80680011,-!p1@HEY1!0.18!1.14!HEY1;;chrX:66763856..66763896,+!p1@AR!0.18!1.14!AR;;chr15:66994615..66994630,+!p3@SMAD6!0.18!1.14!SMAD6;;chr15:96869292..96869320,+!p15@NR2F2!0.18!1.14!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!0.18!1.14!NR2F2;;chr16:54320158..54320200,-!p5@IRX3!0.18!1.14!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.18!1.14!IRX5;;chr16:67063142..67063153,+!p4@CBFB!0.18!1.14!CBFB;;chr11:113930425..113930471,+!p1@ZBTB16!0.18!1.14!ZBTB16;;chr12:80085255..80085284,-!p9@PAWR!0.18!1.14!PAWR;;chr12:7079807..7079848,-!p1@PHB2!0.17!241.88!PHB2;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.17!100.97!PCBP2;;chr9:130953817..130953876,-!p1@CIZ1!0.17!80.44!CIZ1;;chr13:114238997..114239077,+!p1@TFDP1!0.17!66.75!TFDP1;;chr18:3450161..3450183,+!p1@TGIF1!0.17!45.07!TGIF1;;chr17:38474489..38474548,+!p1@RARA!0.17!42.21!RARA;;chr19:11071685..11071798,+!p1@SMARCA4!0.17!37.08!SMARCA4;;chr11:47236489..47236567,+!p2@DDB2!0.17!17.68!DDB2;;chr11:62369108..62369183,-!p3@MTA2!0.17!16.54!MTA2;;chr22:30162924..30163005,-!p1@ZMAT5!0.17!15.97!ZMAT5;;chr19:42580274..42580375,+!p1@ZNF574!0.17!14.83!ZNF574;;chr1:246729483..246729538,-!p2@TFB2M!0.17!11.98!TFB2M;;chr19:4065485..4065546,-!p2@ZBTB7A!0.17!11.41!ZBTB7A;;chr19:49865646..49865718,-!p1@TEAD2!0.17!10.84!TEAD2;;chr15:50647274..50647336,-!p1@GABPB1!0.17!8.56!GABPB1;;chr12:54772960..54773015,-!p3@ZNF385A!0.17!5.70!ZNF385A;;chr19:6280025..6280040,-!p2@MLLT1!0.17!3.99!MLLT1;;chr1:8484142..8484232,-!p10@RERE!0.17!2.85!RERE;;chr1:8763463..8763499,-!p6@RERE!0.17!2.85!RERE;;chr17:46621937..46621966,-!p2@HOXB2!0.17!2.85!HOXB2;;chr19:12721790..12721810,+!p2@ZNF791!0.17!2.85!ZNF791;;chr22:41697497..41697515,+!p2@ZC3H7B!0.17!2.85!ZC3H7B;;chr3:48282536..48282586,+!p2@ZNF589!0.17!2.85!ZNF589;;chr20:25677443..25677464,-!p2@ZNF337!0.17!2.28!ZNF337;;chr1:25256756..25256774,-!p1@RUNX3!0.17!1.71!RUNX3;;chr6:31869828..31869880,-!p1@ZBTB12!0.17!1.71!ZBTB12;;chr16:31724618..31724630,+!p2@ZNF720!0.17!1.71!ZNF720;;chr16:89787973..89788001,+!p3@ZNF276!0.17!1.71!ZNF276;;chr12:122516678..122516687,+!p3@MLXIP!0.17!1.71!MLXIP;;chr14:21566882..21566898,-!p3@ZNF219!0.17!1.14!ZNF219;;chr6:43139248..43139261,+!p4@SRF!0.17!1.14!SRF;;chr19:44037334..44037365,+!p2@ZNF575!0.17!1.14!ZNF575;;chr19:58666399..58666438,-!p3@ZNF329!0.17!1.14!ZNF329;;chr1:247171316..247171336,-!p3@ZNF695!0.17!1.14!ZNF695;;chr10:44144219..44144230,-!p5@ZNF32!0.17!0.57!ZNF32;;chr12:57853565..57853579,+!p1@GLI1!0.17!0.57!GLI1;;chr12:66218152..66218174,+!p10@HMGA2!0.17!0.57!HMGA2;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.16!31.95!MEF2B;;chr19:1863591..1863611,-!p2@KLF16!0.16!11.98!KLF16;;chr16:30418910..30418961,+!p1@ZNF771!0.16!9.13!ZNF771;;chr19:57106647..57106686,+!p1@ZNF71!0.16!7.99!ZNF71;;chr3:128206762..128206781,-!p2@GATA2!0.16!7.42!GATA2;;chr11:62368696..62368759,-!p4@MTA2!0.16!7.42!MTA2;;chr3:40518599..40518664,+!p1@ZNF619!0.16!6.85!ZNF619;;chr5:92918919..92918942,+!p1@NR2F1!0.16!5.13!NR2F1;;chr8:57123815..57123867,-!p1@PLAG1!0.16!4.56!PLAG1;;chr7:102985288..102985310,-!p2@DNAJC2!0.16!2.28!DNAJC2;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.16!2.28!ZKSCAN5;;chr8:145159447..145159458,+!p4@MAF1!0.16!2.28!MAF1;;chr2:46524474..46524491,+!p4@EPAS1!0.16!2.28!EPAS1;;chr19:52408285..52408310,-!p3@ZNF649!0.16!2.28!ZNF649;;chr20:25677399..25677433,-!p3@ZNF337!0.16!1.71!ZNF337;;chr20:50808667..50808729,-!p3@ZFP64!0.16!1.71!ZFP64;;chr17:61920116..61920131,-!p5@SMARCD2!0.16!1.71!SMARCD2;;chr18:51750414..51750449,-!p5@MBD2!0.16!1.71!MBD2;;chr5:43065197..43065244,+!p5@ZNF131!0.16!1.71!ZNF131;;chr15:57025812..57025819,-!p4@ZNF280D!0.16!1.14!ZNF280D;;chr4:57774884..57774924,+!p4@REST!0.16!1.14!REST;;chr1:35657082..35657099,-!p8@SFPQ!0.16!1.14!SFPQ;;chr12:10875768..10875808,-!p3@CSDA!0.16!1.14!CSDA;;chr12:3068196..3068232,+!p9@TEAD4!0.16!0.57!TEAD4;;chr2:25565377..25565389,-!p9@DNMT3A!0.16!0.57!DNMT3A;;chr5:92918860..92918871,+!p10@NR2F1!0.16!0.57!NR2F1;;chr7:100076744..100076749,-!p8@TSC22D4!0.16!0.57!TSC22D4;;chr8:80680078..80680101,-!p3@HEY1!0.16!0.57!HEY1;;chr15:77197781..77197801,-!p3@SCAPER!0.16!0.57!SCAPER;;chr17:42295955..42295964,-!p22@UBTF!0.16!0.57!UBTF;;chr19:39390697..39390713,+!p4@NFKBIB!0.16!0.57!NFKBIB;;chr19:52772811..52772817,+!p3@ZNF766!0.16!0.57!ZNF766;;chr19:56154958..56155027,+!p1@ZNF581!0.15!41.64!ZNF581;;chr10:96122682..96122730,-!p1@NOC3L!0.15!18.26!NOC3L;;chr3:52001448..52001478,-!p2@PCBP4!0.15!17.11!PCBP4;;chr12:77459306..77459365,-!p1@E2F7!0.15!15.40!E2F7;;chr4:26322419..26322479,+!p2@RBPJ!0.15!14.83!RBPJ;;ch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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11346-117G5 | |id=FF:11346-117G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |||
|library_id=CNhs11379 | |||
|library_id_phase_based=2:CNhs11379 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11346 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTCAA.11346 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11346 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTCAA.11346 | |||
|name=Fibroblast - Dermal, donor2 | |name=Fibroblast - Dermal, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11379,LSID771,release012,COMPLETED | |profile_hcage=CNhs11379,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.152999621921016,-0.282403560576942,0,0,0,0,0,0,0,0,0.196030148402437,0,0,0,0,-0.153323010348428,0,0,0,0.21659803436627,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0478846427647946,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.196030148402437,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0879997793936553,0,0,0,-0.00564320679025099,0.0468644280405482,0,0,0,0,0.232569884100803,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0016414802787573,0,0,0,0.0171773729327378,0.125268551912235,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA106-R10a | |rna_catalog_number=CA106-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117G5 | |rna_tube_id=117G5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.AGTCAA | |||
|sample_age=68 | |sample_age=68 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.50971768856247e-242!GO:0005737;cytoplasm;8.45066017276836e-200!GO:0043226;organelle;3.91972623153604e-188!GO:0043229;intracellular organelle;7.31028347610082e-188!GO:0043231;intracellular membrane-bound organelle;6.35222010387178e-183!GO:0043227;membrane-bound organelle;1.475772810078e-182!GO:0044422;organelle part;1.22265631796439e-150!GO:0044446;intracellular organelle part;2.53863581979976e-149!GO:0044444;cytoplasmic part;2.62808026367263e-141!GO:0032991;macromolecular complex;1.33438283190123e-105!GO:0030529;ribonucleoprotein complex;8.43074471808226e-96!GO:0044237;cellular metabolic process;1.10218198836742e-87!GO:0044238;primary metabolic process;5.14950898132776e-87!GO:0005739;mitochondrion;6.58329603520689e-83!GO:0043233;organelle lumen;2.17563004653662e-81!GO:0031974;membrane-enclosed lumen;2.17563004653662e-81!GO:0005515;protein binding;2.2843533592062e-79!GO:0043170;macromolecule metabolic process;6.93140153529145e-76!GO:0044428;nuclear part;2.40263114204941e-74!GO:0003723;RNA binding;4.50930165688294e-71!GO:0005634;nucleus;2.59783047045616e-67!GO:0005840;ribosome;2.76743114413097e-59!GO:0006412;translation;3.45367218253085e-56!GO:0044429;mitochondrial part;1.62802695771518e-54!GO:0006396;RNA processing;4.03704098934246e-54!GO:0009058;biosynthetic process;5.24612357131385e-52!GO:0003735;structural constituent of ribosome;8.84119595613067e-52!GO:0043234;protein complex;1.41353078422427e-51!GO:0019538;protein metabolic process;6.7740155955375e-51!GO:0031090;organelle membrane;1.87609591311739e-50!GO:0044249;cellular biosynthetic process;1.22028868556863e-49!GO:0016043;cellular component organization and biogenesis;2.39626370544065e-47!GO:0031981;nuclear lumen;1.20904998350396e-46!GO:0031967;organelle envelope;5.16629478781812e-46!GO:0031975;envelope;1.35725703957219e-45!GO:0044260;cellular macromolecule metabolic process;9.80809445680396e-45!GO:0044267;cellular protein metabolic process;1.49113524215717e-44!GO:0033279;ribosomal subunit;6.81155472505812e-44!GO:0009059;macromolecule biosynthetic process;7.63287614361443e-44!GO:0005829;cytosol;1.37235350081742e-42!GO:0015031;protein transport;4.31349069910678e-40!GO:0033036;macromolecule localization;1.17422986388537e-39!GO:0043228;non-membrane-bound organelle;6.25968023513749e-39!GO:0043232;intracellular non-membrane-bound organelle;6.25968023513749e-39!GO:0043283;biopolymer metabolic process;8.45485314566331e-38!GO:0045184;establishment of protein localization;7.06339555245472e-37!GO:0016071;mRNA metabolic process;7.06339555245472e-37!GO:0008104;protein localization;1.57131394076451e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.00422128661408e-35!GO:0010467;gene expression;1.7306614521259e-35!GO:0008380;RNA splicing;2.03957934865398e-35!GO:0005740;mitochondrial envelope;2.73609678530201e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.851656379683e-34!GO:0006996;organelle organization and biogenesis;1.27294671141446e-33!GO:0046907;intracellular transport;6.56880524218676e-33!GO:0006397;mRNA processing;1.14000897791229e-32!GO:0065003;macromolecular complex assembly;4.06412147882613e-32!GO:0031966;mitochondrial membrane;4.35236017158849e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.27286793515929e-31!GO:0019866;organelle inner membrane;1.0231993859647e-30!GO:0005743;mitochondrial inner membrane;4.15141889603726e-29!GO:0022607;cellular component assembly;6.47004572362289e-29!GO:0006886;intracellular protein transport;2.02227610129274e-28!GO:0006259;DNA metabolic process;3.09020329541971e-28!GO:0005654;nucleoplasm;2.3237998327093e-26!GO:0005681;spliceosome;2.87016301610273e-26!GO:0031980;mitochondrial lumen;7.75892996100087e-25!GO:0005759;mitochondrial matrix;7.75892996100087e-25!GO:0044445;cytosolic part;1.57852317221877e-24!GO:0015934;large ribosomal subunit;8.8194631508068e-24!GO:0005730;nucleolus;3.70952864928752e-23!GO:0044455;mitochondrial membrane part;1.12324187057646e-22!GO:0006119;oxidative phosphorylation;3.95896213001647e-22!GO:0000166;nucleotide binding;1.48099855492365e-21!GO:0044451;nucleoplasm part;1.75331094784135e-21!GO:0051649;establishment of cellular localization;3.11839930372594e-21!GO:0015935;small ribosomal subunit;3.86194256938385e-21!GO:0007049;cell cycle;4.78916661352883e-21!GO:0051641;cellular localization;4.88935727689544e-21!GO:0016462;pyrophosphatase activity;2.51573216251228e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.79833285518469e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.97592372433635e-20!GO:0017111;nucleoside-triphosphatase activity;2.20158748929843e-19!GO:0048770;pigment granule;6.4570339145857e-19!GO:0042470;melanosome;6.4570339145857e-19!GO:0006457;protein folding;6.66853401324873e-19!GO:0042254;ribosome biogenesis and assembly;9.85306220466872e-19!GO:0012505;endomembrane system;9.92843823658124e-19!GO:0051186;cofactor metabolic process;1.93210005104984e-18!GO:0016874;ligase activity;2.56482479977575e-18!GO:0005746;mitochondrial respiratory chain;9.05141838608027e-18!GO:0022618;protein-RNA complex assembly;2.82559560618219e-17!GO:0005761;mitochondrial ribosome;3.95736664327034e-17!GO:0000313;organellar ribosome;3.95736664327034e-17!GO:0022402;cell cycle process;8.43525927813853e-17!GO:0000278;mitotic cell cycle;9.48994129047948e-17!GO:0003676;nucleic acid binding;1.42564039955224e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.75280528585323e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.94180870919146e-16!GO:0005783;endoplasmic reticulum;5.02730712081135e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.39240630326954e-16!GO:0008134;transcription factor binding;2.08546037970428e-15!GO:0044265;cellular macromolecule catabolic process;2.15224282526133e-15!GO:0006605;protein targeting;2.46842983269328e-15!GO:0017076;purine nucleotide binding;3.75564421998191e-15!GO:0043285;biopolymer catabolic process;4.21364984178346e-15!GO:0008135;translation factor activity, nucleic acid binding;4.82235504949171e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.92535104081833e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.22958000878801e-15!GO:0003954;NADH dehydrogenase activity;6.22958000878801e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.22958000878801e-15!GO:0009057;macromolecule catabolic process;6.40973522742243e-15!GO:0044248;cellular catabolic process;7.04545479903265e-15!GO:0006974;response to DNA damage stimulus;8.02956090315215e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.39475091473104e-14!GO:0000375;RNA splicing, via transesterification reactions;1.39475091473104e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.39475091473104e-14!GO:0032553;ribonucleotide binding;1.41097151891865e-14!GO:0032555;purine ribonucleotide binding;1.41097151891865e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.2836181963548e-14!GO:0044432;endoplasmic reticulum part;2.68108830068309e-14!GO:0006512;ubiquitin cycle;3.95746388334985e-14!GO:0006732;coenzyme metabolic process;7.8987694849486e-14!GO:0051082;unfolded protein binding;1.1748243663641e-13!GO:0000087;M phase of mitotic cell cycle;1.88444517592091e-13!GO:0009055;electron carrier activity;2.17933458149261e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.17933458149261e-13!GO:0045271;respiratory chain complex I;2.17933458149261e-13!GO:0005747;mitochondrial respiratory chain complex I;2.17933458149261e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.17933458149261e-13!GO:0006399;tRNA metabolic process;2.23773574394317e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.31018774695011e-13!GO:0042773;ATP synthesis coupled electron transport;2.31018774695011e-13!GO:0007067;mitosis;3.05159882357616e-13!GO:0019941;modification-dependent protein catabolic process;3.14811212261133e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.14811212261133e-13!GO:0005794;Golgi apparatus;3.56152999348892e-13!GO:0006364;rRNA processing;3.62112404024097e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.73942072336628e-13!GO:0044257;cellular protein catabolic process;4.88257912774328e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.09354956098341e-13!GO:0030554;adenyl nucleotide binding;9.32810158102184e-13!GO:0005635;nuclear envelope;9.40761983520719e-13!GO:0016072;rRNA metabolic process;1.04779677353135e-12!GO:0005524;ATP binding;1.37621950216254e-12!GO:0016070;RNA metabolic process;1.94999747328572e-12!GO:0006260;DNA replication;2.05323191499829e-12!GO:0048193;Golgi vesicle transport;2.05581022450171e-12!GO:0030163;protein catabolic process;2.09403456904661e-12!GO:0005694;chromosome;2.25326127014637e-12!GO:0032559;adenyl ribonucleotide binding;2.54541801148763e-12!GO:0044453;nuclear membrane part;2.79259532684674e-12!GO:0031965;nuclear membrane;4.51802207806368e-12!GO:0009719;response to endogenous stimulus;4.96087437062244e-12!GO:0016192;vesicle-mediated transport;6.4785786207213e-12!GO:0043412;biopolymer modification;1.11826688456509e-11!GO:0006281;DNA repair;1.17301550464207e-11!GO:0003743;translation initiation factor activity;1.54377001236833e-11!GO:0022403;cell cycle phase;2.20810641110707e-11!GO:0044427;chromosomal part;3.20958309787186e-11!GO:0009259;ribonucleotide metabolic process;3.34829495274923e-11!GO:0051276;chromosome organization and biogenesis;4.37633758478715e-11!GO:0006163;purine nucleotide metabolic process;6.15822987539792e-11!GO:0042623;ATPase activity, coupled;6.75664893836573e-11!GO:0016604;nuclear body;6.79603590513717e-11!GO:0006913;nucleocytoplasmic transport;6.82118466757539e-11!GO:0006413;translational initiation;9.50058693108906e-11!GO:0016887;ATPase activity;1.14957865824069e-10!GO:0012501;programmed cell death;1.25817528697138e-10!GO:0005643;nuclear pore;1.32727830799531e-10!GO:0005793;ER-Golgi intermediate compartment;1.34863370822339e-10!GO:0051169;nuclear transport;1.47199894933464e-10!GO:0006915;apoptosis;1.57305777790075e-10!GO:0016491;oxidoreductase activity;1.86837900661724e-10!GO:0003712;transcription cofactor activity;2.90444875826741e-10!GO:0009150;purine ribonucleotide metabolic process;2.90795074554014e-10!GO:0006446;regulation of translational initiation;3.62509646344544e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.90876781617607e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.90876781617607e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.90876781617607e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.90927377147467e-10!GO:0006164;purine nucleotide biosynthetic process;3.90927377147467e-10!GO:0006464;protein modification process;4.05606899474405e-10!GO:0008565;protein transporter activity;4.76812770118523e-10!GO:0009260;ribonucleotide biosynthetic process;5.45888392543699e-10!GO:0000074;regulation of progression through cell cycle;5.73416305547226e-10!GO:0051726;regulation of cell cycle;5.83519633904924e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.88716462291432e-10!GO:0065002;intracellular protein transport across a membrane;7.96213328915219e-10!GO:0043038;amino acid activation;9.24508546755495e-10!GO:0006418;tRNA aminoacylation for protein translation;9.24508546755495e-10!GO:0043039;tRNA aminoacylation;9.24508546755495e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.09069946068464e-09!GO:0006323;DNA packaging;1.09103757737783e-09!GO:0005789;endoplasmic reticulum membrane;1.45057702927378e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.51230883601972e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.82067603966386e-09!GO:0051301;cell division;1.84303984768783e-09!GO:0051188;cofactor biosynthetic process;2.35351509117651e-09!GO:0008219;cell death;2.4832273574271e-09!GO:0016265;death;2.4832273574271e-09!GO:0046930;pore complex;2.65143228151928e-09!GO:0000279;M phase;2.92285968929751e-09!GO:0006461;protein complex assembly;3.101806073142e-09!GO:0009056;catabolic process;3.93967977161428e-09!GO:0017038;protein import;4.32668771185935e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.44841958064876e-09!GO:0065004;protein-DNA complex assembly;4.77785211462911e-09!GO:0008026;ATP-dependent helicase activity;5.37277968228271e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.14306716087635e-09!GO:0009060;aerobic respiration;8.41212677318222e-09!GO:0009199;ribonucleoside triphosphate metabolic process;8.45611093538474e-09!GO:0007005;mitochondrion organization and biogenesis;1.09028580727452e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.11994994105626e-08!GO:0009141;nucleoside triphosphate metabolic process;1.14430770008766e-08!GO:0043687;post-translational protein modification;1.3269746538254e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.8106403488653e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.8106403488653e-08!GO:0004386;helicase activity;1.8604966025493e-08!GO:0016607;nuclear speck;1.90066234125965e-08!GO:0006333;chromatin assembly or disassembly;2.08686177278187e-08!GO:0008639;small protein conjugating enzyme activity;2.33509577417912e-08!GO:0009117;nucleotide metabolic process;3.16396211879772e-08!GO:0050657;nucleic acid transport;3.27770808818498e-08!GO:0051236;establishment of RNA localization;3.27770808818498e-08!GO:0050658;RNA transport;3.27770808818498e-08!GO:0006403;RNA localization;3.60678156800122e-08!GO:0019787;small conjugating protein ligase activity;3.88189304480876e-08!GO:0015986;ATP synthesis coupled proton transport;3.97324425580813e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.97324425580813e-08!GO:0016740;transferase activity;4.30644908792959e-08!GO:0004842;ubiquitin-protein ligase activity;5.19317499918034e-08!GO:0045333;cellular respiration;5.71008168973626e-08!GO:0006334;nucleosome assembly;7.109772778613e-08!GO:0046034;ATP metabolic process;7.29278159027586e-08!GO:0016779;nucleotidyltransferase activity;8.11884209356095e-08!GO:0000785;chromatin;8.39012294151944e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.88547187155216e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.88547187155216e-08!GO:0048523;negative regulation of cellular process;9.16191668968179e-08!GO:0051246;regulation of protein metabolic process;1.03165649980437e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.07980615795281e-07!GO:0006366;transcription from RNA polymerase II promoter;1.52956281504355e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.9266995114362e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.9266995114362e-07!GO:0016881;acid-amino acid ligase activity;2.08376680920211e-07!GO:0031497;chromatin assembly;2.16500400719656e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.25279222336141e-07!GO:0003697;single-stranded DNA binding;2.33797743020207e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.3955904344125e-07!GO:0019829;cation-transporting ATPase activity;2.41793622227486e-07!GO:0048475;coated membrane;2.53664270978182e-07!GO:0030117;membrane coat;2.53664270978182e-07!GO:0005788;endoplasmic reticulum lumen;2.670128152242e-07!GO:0006099;tricarboxylic acid cycle;2.9273864778192e-07!GO:0046356;acetyl-CoA catabolic process;2.9273864778192e-07!GO:0030120;vesicle coat;3.38732550483364e-07!GO:0030662;coated vesicle membrane;3.38732550483364e-07!GO:0009108;coenzyme biosynthetic process;3.67896131667807e-07!GO:0006091;generation of precursor metabolites and energy;3.93566859393454e-07!GO:0051187;cofactor catabolic process;4.2191339778922e-07!GO:0006084;acetyl-CoA metabolic process;5.92447774677081e-07!GO:0003924;GTPase activity;5.96986113183177e-07!GO:0005768;endosome;6.88117405749991e-07!GO:0006754;ATP biosynthetic process;6.9224137992353e-07!GO:0006753;nucleoside phosphate metabolic process;6.9224137992353e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.95650195897592e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.96545972063777e-07!GO:0005762;mitochondrial large ribosomal subunit;9.61568284539995e-07!GO:0000315;organellar large ribosomal subunit;9.61568284539995e-07!GO:0042981;regulation of apoptosis;9.79795906378757e-07!GO:0009109;coenzyme catabolic process;1.11846899672092e-06!GO:0043067;regulation of programmed cell death;1.32379829635794e-06!GO:0016853;isomerase activity;1.49451438237219e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.74642337741903e-06!GO:0051028;mRNA transport;1.88324740326252e-06!GO:0045259;proton-transporting ATP synthase complex;1.98537932384508e-06!GO:0000245;spliceosome assembly;2.17489809196696e-06!GO:0003899;DNA-directed RNA polymerase activity;2.54075954438748e-06!GO:0043566;structure-specific DNA binding;3.1403221186741e-06!GO:0048519;negative regulation of biological process;3.1797573389907e-06!GO:0006916;anti-apoptosis;3.29061681440438e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.79878194699341e-06!GO:0044431;Golgi apparatus part;4.40721259151121e-06!GO:0015630;microtubule cytoskeleton;4.41571640266958e-06!GO:0051170;nuclear import;4.48310458126628e-06!GO:0005667;transcription factor complex;4.62456458373195e-06!GO:0016787;hydrolase activity;4.7555200274906e-06!GO:0043069;negative regulation of programmed cell death;4.78093685378365e-06!GO:0044440;endosomal part;5.0401044280766e-06!GO:0010008;endosome membrane;5.0401044280766e-06!GO:0031988;membrane-bound vesicle;5.0401044280766e-06!GO:0031252;leading edge;5.53843046830379e-06!GO:0003724;RNA helicase activity;5.60743739318274e-06!GO:0006752;group transfer coenzyme metabolic process;6.7657554600759e-06!GO:0043066;negative regulation of apoptosis;7.18116198500201e-06!GO:0006606;protein import into nucleus;7.67046729885494e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.02965358233698e-05!GO:0032446;protein modification by small protein conjugation;1.03784556300776e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.06541572430472e-05!GO:0016567;protein ubiquitination;1.12747330818658e-05!GO:0004298;threonine endopeptidase activity;1.2007978259951e-05!GO:0045454;cell redox homeostasis;1.78833084290399e-05!GO:0050794;regulation of cellular process;2.22410517062601e-05!GO:0003713;transcription coactivator activity;2.39715918523804e-05!GO:0003714;transcription corepressor activity;3.1990044429482e-05!GO:0000151;ubiquitin ligase complex;3.32859409602739e-05!GO:0005770;late endosome;3.38555544382431e-05!GO:0016564;transcription repressor activity;3.49995724051789e-05!GO:0008033;tRNA processing;3.49995724051789e-05!GO:0009165;nucleotide biosynthetic process;3.55388814615995e-05!GO:0005819;spindle;3.62342498660567e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.93240227308264e-05!GO:0005525;GTP binding;4.03475698087769e-05!GO:0006261;DNA-dependent DNA replication;4.25390029750637e-05!GO:0031410;cytoplasmic vesicle;4.31380034649891e-05!GO:0031982;vesicle;4.42560004053065e-05!GO:0005813;centrosome;4.44273783349207e-05!GO:0008654;phospholipid biosynthetic process;4.72949518136512e-05!GO:0016568;chromatin modification;5.02852374188837e-05!GO:0031968;organelle outer membrane;5.08134942797662e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.08285682861839e-05!GO:0006793;phosphorus metabolic process;5.27965233672865e-05!GO:0006796;phosphate metabolic process;5.27965233672865e-05!GO:0000314;organellar small ribosomal subunit;5.36209410700773e-05!GO:0005763;mitochondrial small ribosomal subunit;5.36209410700773e-05!GO:0005773;vacuole;5.77658322174493e-05!GO:0019867;outer membrane;5.77658322174493e-05!GO:0006613;cotranslational protein targeting to membrane;5.91945405245325e-05!GO:0016563;transcription activator activity;6.00243143038413e-05!GO:0043623;cellular protein complex assembly;6.4403667662132e-05!GO:0016859;cis-trans isomerase activity;6.55876283571749e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.7934229645543e-05!GO:0044452;nucleolar part;7.19184446945012e-05!GO:0030867;rough endoplasmic reticulum membrane;7.55173661744639e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.59075944925649e-05!GO:0000139;Golgi membrane;8.26479057385361e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.89097276495131e-05!GO:0008186;RNA-dependent ATPase activity;9.4540031414279e-05!GO:0005815;microtubule organizing center;0.000117204222938028!GO:0043021;ribonucleoprotein binding;0.000131853785229303!GO:0006082;organic acid metabolic process;0.0001401806394651!GO:0000786;nucleosome;0.000140458612150524!GO:0051087;chaperone binding;0.000141975628849289!GO:0005741;mitochondrial outer membrane;0.000147281553547536!GO:0019752;carboxylic acid metabolic process;0.000147281553547536!GO:0016310;phosphorylation;0.000149506388654171!GO:0051329;interphase of mitotic cell cycle;0.000149506388654171!GO:0005905;coated pit;0.000157079685343506!GO:0015980;energy derivation by oxidation of organic compounds;0.000158404845204893!GO:0006626;protein targeting to mitochondrion;0.000158835501963624!GO:0050662;coenzyme binding;0.000160766277559273!GO:0045786;negative regulation of progression through cell cycle;0.000168070012464734!GO:0005048;signal sequence binding;0.000168589019348877!GO:0048522;positive regulation of cellular process;0.000189123915201557!GO:0030880;RNA polymerase complex;0.000198649041913175!GO:0051325;interphase;0.000204530133876068!GO:0043681;protein import into mitochondrion;0.000204530133876068!GO:0033116;ER-Golgi intermediate compartment membrane;0.000221018721011786!GO:0031324;negative regulation of cellular metabolic process;0.000221887881131634!GO:0000323;lytic vacuole;0.000224710644034718!GO:0005764;lysosome;0.000224710644034718!GO:0051168;nuclear export;0.00023379825532465!GO:0006839;mitochondrial transport;0.000237962367737434!GO:0051540;metal cluster binding;0.000241868548082949!GO:0051536;iron-sulfur cluster binding;0.000241868548082949!GO:0004004;ATP-dependent RNA helicase activity;0.000248653317307308!GO:0051427;hormone receptor binding;0.000248653317307308!GO:0005798;Golgi-associated vesicle;0.000254832796572012!GO:0046483;heterocycle metabolic process;0.00025724716549595!GO:0019899;enzyme binding;0.00025724716549595!GO:0030036;actin cytoskeleton organization and biogenesis;0.000268677409518181!GO:0016126;sterol biosynthetic process;0.000280004573231256!GO:0005657;replication fork;0.000296256571025533!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000296256571025533!GO:0005769;early endosome;0.000297212340491334!GO:0007051;spindle organization and biogenesis;0.000345192768288538!GO:0032561;guanyl ribonucleotide binding;0.000345267723744178!GO:0019001;guanyl nucleotide binding;0.000345267723744178!GO:0000059;protein import into nucleus, docking;0.000362160012134782!GO:0005885;Arp2/3 protein complex;0.000411052943116696!GO:0007006;mitochondrial membrane organization and biogenesis;0.000449823470080735!GO:0065009;regulation of a molecular function;0.000463247128171205!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000479433215198095!GO:0006414;translational elongation;0.000481422161927927!GO:0006520;amino acid metabolic process;0.000493388497114265!GO:0035257;nuclear hormone receptor binding;0.000517409832262803!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000537372890994229!GO:0000428;DNA-directed RNA polymerase complex;0.000537372890994229!GO:0007010;cytoskeleton organization and biogenesis;0.000585679821971175!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000603529616342824!GO:0008168;methyltransferase activity;0.000608039379281266!GO:0006383;transcription from RNA polymerase III promoter;0.000639724165752761!GO:0005791;rough endoplasmic reticulum;0.000642309371849979!GO:0016741;transferase activity, transferring one-carbon groups;0.000642668828650059!GO:0000075;cell cycle checkpoint;0.000643141837338337!GO:0008632;apoptotic program;0.000646422079690524!GO:0016044;membrane organization and biogenesis;0.000649427945389551!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0006644227443469!GO:0003684;damaged DNA binding;0.000679254918894292!GO:0008361;regulation of cell size;0.000695425916492917!GO:0019843;rRNA binding;0.000695717001797071!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000712488998382492!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000789196443215981!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000789196443215981!GO:0008250;oligosaccharyl transferase complex;0.000854939182347552!GO:0016049;cell growth;0.000878783127253151!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000894016199535998!GO:0042802;identical protein binding;0.00095872122565474!GO:0051920;peroxiredoxin activity;0.000959810703947456!GO:0009892;negative regulation of metabolic process;0.000986293181308692!GO:0006950;response to stress;0.000987881511097377!GO:0008610;lipid biosynthetic process;0.00100778000946474!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00102298876342936!GO:0006612;protein targeting to membrane;0.0011053008737247!GO:0046474;glycerophospholipid biosynthetic process;0.0011053008737247!GO:0008094;DNA-dependent ATPase activity;0.00114268561810114!GO:0001558;regulation of cell growth;0.00115536251516169!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00118840227396341!GO:0051252;regulation of RNA metabolic process;0.00119574203821587!GO:0030663;COPI coated vesicle membrane;0.00123305540901308!GO:0030126;COPI vesicle coat;0.00123305540901308!GO:0000775;chromosome, pericentric region;0.00124212390410583!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00124284622331159!GO:0004576;oligosaccharyl transferase activity;0.00124284622331159!GO:0048037;cofactor binding;0.00126318141137709!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00129348040991761!GO:0000049;tRNA binding;0.00130432708445114!GO:0006695;cholesterol biosynthetic process;0.00135578123909823!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00142471057256121!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00142471057256121!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00142471057256121!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00152570315066479!GO:0044262;cellular carbohydrate metabolic process;0.00157092205912812!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00162000912679094!GO:0030029;actin filament-based process;0.00168885446279128!GO:0031072;heat shock protein binding;0.00171051809345385!GO:0050789;regulation of biological process;0.00172946145996014!GO:0043284;biopolymer biosynthetic process;0.00181104179676052!GO:0005684;U2-dependent spliceosome;0.00181916890591827!GO:0051287;NAD binding;0.00183246259451261!GO:0006118;electron transport;0.00184814602270245!GO:0051789;response to protein stimulus;0.00189206169382618!GO:0006986;response to unfolded protein;0.00189206169382618!GO:0033673;negative regulation of kinase activity;0.00191635960647665!GO:0006469;negative regulation of protein kinase activity;0.00191635960647665!GO:0032508;DNA duplex unwinding;0.00196897839659573!GO:0032392;DNA geometric change;0.00196897839659573!GO:0030132;clathrin coat of coated pit;0.00200339764833529!GO:0051348;negative regulation of transferase activity;0.00201571100544616!GO:0008652;amino acid biosynthetic process;0.00203130532760414!GO:0043488;regulation of mRNA stability;0.00238438635506034!GO:0043487;regulation of RNA stability;0.00238438635506034!GO:0006401;RNA catabolic process;0.00240299621769286!GO:0007243;protein kinase cascade;0.00240342931406471!GO:0016363;nuclear matrix;0.00243476070079461!GO:0030137;COPI-coated vesicle;0.00254673709113434!GO:0051539;4 iron, 4 sulfur cluster binding;0.0026732076415013!GO:0015036;disulfide oxidoreductase activity;0.00269993703221072!GO:0006891;intra-Golgi vesicle-mediated transport;0.00273962727911214!GO:0003729;mRNA binding;0.00283064301459394!GO:0006402;mRNA catabolic process;0.00302052879959553!GO:0018196;peptidyl-asparagine modification;0.00306722732813469!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00306722732813469!GO:0007088;regulation of mitosis;0.00314101470721189!GO:0030118;clathrin coat;0.00318394466665464!GO:0006595;polyamine metabolic process;0.00345913613673522!GO:0003711;transcription elongation regulator activity;0.00353198806553544!GO:0006778;porphyrin metabolic process;0.00353198806553544!GO:0033013;tetrapyrrole metabolic process;0.00353198806553544!GO:0030133;transport vesicle;0.00353198806553544!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0035443513879739!GO:0015399;primary active transmembrane transporter activity;0.0035443513879739!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00356664777972549!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00356664777972549!GO:0006268;DNA unwinding during replication;0.00401701953504418!GO:0046467;membrane lipid biosynthetic process;0.00437095495366428!GO:0017166;vinculin binding;0.00457509834389516!GO:0006611;protein export from nucleus;0.00467237123023575!GO:0043086;negative regulation of catalytic activity;0.00474812964378641!GO:0016481;negative regulation of transcription;0.00475727262284345!GO:0048487;beta-tubulin binding;0.00476476744691805!GO:0015992;proton transport;0.00478007241437455!GO:0006807;nitrogen compound metabolic process;0.00509672913056239!GO:0008139;nuclear localization sequence binding;0.00525011498017771!GO:0030027;lamellipodium;0.00528808017234612!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00534209220876665!GO:0006289;nucleotide-excision repair;0.00541579927542256!GO:0006740;NADPH regeneration;0.00541579927542256!GO:0006098;pentose-phosphate shunt;0.00541579927542256!GO:0006519;amino acid and derivative metabolic process;0.00544731872689738!GO:0004177;aminopeptidase activity;0.0055620420686769!GO:0019206;nucleoside kinase activity;0.00575381222846754!GO:0006979;response to oxidative stress;0.00579501508958476!GO:0006818;hydrogen transport;0.00607598384099101!GO:0003678;DNA helicase activity;0.00611031047831845!GO:0009112;nucleobase metabolic process;0.00613175827972158!GO:0016407;acetyltransferase activity;0.0062100306262669!GO:0004527;exonuclease activity;0.0062100306262669!GO:0008092;cytoskeletal protein binding;0.0062100306262669!GO:0006405;RNA export from nucleus;0.00651593668308552!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00657388770233004!GO:0015002;heme-copper terminal oxidase activity;0.00657388770233004!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00657388770233004!GO:0004129;cytochrome-c oxidase activity;0.00657388770233004!GO:0008180;signalosome;0.00660162414233466!GO:0022890;inorganic cation transmembrane transporter activity;0.00661918952290269!GO:0015631;tubulin binding;0.00670344081218729!GO:0004518;nuclease activity;0.00719391252421321!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00735708514804172!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00745153030377482!GO:0000178;exosome (RNase complex);0.00745153030377482!GO:0009308;amine metabolic process;0.00767866729402718!GO:0009303;rRNA transcription;0.00769141735642529!GO:0050790;regulation of catalytic activity;0.00772468273817893!GO:0048471;perinuclear region of cytoplasm;0.00779878411063135!GO:0048500;signal recognition particle;0.00781656833062158!GO:0031124;mRNA 3'-end processing;0.00784519475545261!GO:0047485;protein N-terminus binding;0.00789291316461325!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00815387463391566!GO:0035258;steroid hormone receptor binding;0.00891801722045803!GO:0008637;apoptotic mitochondrial changes;0.00893861538420984!GO:0042168;heme metabolic process;0.00903034077296939!GO:0005096;GTPase activator activity;0.00929483762292828!GO:0031902;late endosome membrane;0.00934090777546862!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00943246885267429!GO:0005832;chaperonin-containing T-complex;0.00946269042810982!GO:0048518;positive regulation of biological process;0.00946269042810982!GO:0030658;transport vesicle membrane;0.00948679285898342!GO:0008047;enzyme activator activity;0.00952459032011624!GO:0005874;microtubule;0.00962488187217904!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00971991163381868!GO:0006779;porphyrin biosynthetic process;0.0105030991290793!GO:0033014;tetrapyrrole biosynthetic process;0.0105030991290793!GO:0008312;7S RNA binding;0.0108025060197551!GO:0046489;phosphoinositide biosynthetic process;0.0108347486718929!GO:0000082;G1/S transition of mitotic cell cycle;0.010840084877708!GO:0003746;translation elongation factor activity;0.0110045338993807!GO:0030127;COPII vesicle coat;0.0114565089464635!GO:0012507;ER to Golgi transport vesicle membrane;0.0114565089464635!GO:0043022;ribosome binding;0.0125081405570218!GO:0009451;RNA modification;0.0130675973573568!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0130767369096717!GO:0005862;muscle thin filament tropomyosin;0.0130775630818021!GO:0003682;chromatin binding;0.0131997336926642!GO:0000096;sulfur amino acid metabolic process;0.0132808780747522!GO:0006144;purine base metabolic process;0.0133736243558309!GO:0000339;RNA cap binding;0.0135784816699599!GO:0030119;AP-type membrane coat adaptor complex;0.0136153658443999!GO:0030134;ER to Golgi transport vesicle;0.0136839806427938!GO:0003690;double-stranded DNA binding;0.0137191329311046!GO:0045941;positive regulation of transcription;0.0138936177109352!GO:0043189;H4/H2A histone acetyltransferase complex;0.014040398355763!GO:0016408;C-acyltransferase activity;0.0143381472891889!GO:0005669;transcription factor TFIID complex;0.0144123533610319!GO:0016251;general RNA polymerase II transcription factor activity;0.014489300664961!GO:0001726;ruffle;0.0146163100862401!GO:0006302;double-strand break repair;0.0151273923423366!GO:0009116;nucleoside metabolic process;0.0151653886439794!GO:0030659;cytoplasmic vesicle membrane;0.0153546019493485!GO:0006007;glucose catabolic process;0.015531474630363!GO:0009124;nucleoside monophosphate biosynthetic process;0.015531474630363!GO:0009123;nucleoside monophosphate metabolic process;0.015531474630363!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0155623585954588!GO:0043596;nuclear replication fork;0.0156316906279552!GO:0035267;NuA4 histone acetyltransferase complex;0.0156585246365078!GO:0007050;cell cycle arrest;0.015684609589856!GO:0000776;kinetochore;0.0159060266479242!GO:0006352;transcription initiation;0.0160722932448802!GO:0030176;integral to endoplasmic reticulum membrane;0.0162919601580483!GO:0051537;2 iron, 2 sulfur cluster binding;0.0163009707586417!GO:0006284;base-excision repair;0.0163009707586417!GO:0022408;negative regulation of cell-cell adhesion;0.016556518649986!GO:0005637;nuclear inner membrane;0.0166593832670195!GO:0007021;tubulin folding;0.0167199095766512!GO:0005869;dynactin complex;0.0169828653873681!GO:0016860;intramolecular oxidoreductase activity;0.0173197178805766!GO:0006733;oxidoreduction coenzyme metabolic process;0.0173327059145072!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0174180715464658!GO:0045047;protein targeting to ER;0.0174180715464658!GO:0043492;ATPase activity, coupled to movement of substances;0.0174561696137798!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0177732375081843!GO:0006378;mRNA polyadenylation;0.0179310291931221!GO:0005100;Rho GTPase activator activity;0.0179398462668113!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0181586864565801!GO:0030521;androgen receptor signaling pathway;0.0181586864565801!GO:0016197;endosome transport;0.0183436911248851!GO:0008283;cell proliferation;0.018962548192788!GO:0030131;clathrin adaptor complex;0.0192877209991378!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0193034098520987!GO:0005774;vacuolar membrane;0.0195531191592688!GO:0006417;regulation of translation;0.0196554109620578!GO:0007264;small GTPase mediated signal transduction;0.0199798635033142!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.020051213266144!GO:0008538;proteasome activator activity;0.0203168176792937!GO:0007052;mitotic spindle organization and biogenesis;0.020462858951292!GO:0005758;mitochondrial intermembrane space;0.0207188941884148!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0207821044301929!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0207821044301929!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0209993203627412!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0211089709962002!GO:0048468;cell development;0.0211532519103048!GO:0007093;mitotic cell cycle checkpoint;0.0211877610388538!GO:0016272;prefoldin complex;0.0212538757749514!GO:0030660;Golgi-associated vesicle membrane;0.021731824017174!GO:0006220;pyrimidine nucleotide metabolic process;0.0218086333060311!GO:0040008;regulation of growth;0.02201276847594!GO:0006509;membrane protein ectodomain proteolysis;0.0220994664786303!GO:0033619;membrane protein proteolysis;0.0220994664786303!GO:0008243;plasminogen activator activity;0.0224932863797551!GO:0008629;induction of apoptosis by intracellular signals;0.0225601951843077!GO:0006376;mRNA splice site selection;0.0226065853833287!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0226065853833287!GO:0009967;positive regulation of signal transduction;0.0226065853833287!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0226537046214606!GO:0048660;regulation of smooth muscle cell proliferation;0.0227207146738136!GO:0006354;RNA elongation;0.023048429056862!GO:0042770;DNA damage response, signal transduction;0.0234707157170683!GO:0001836;release of cytochrome c from mitochondria;0.0240440395862199!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0240660317408324!GO:0035035;histone acetyltransferase binding;0.024171260791564!GO:0031529;ruffle organization and biogenesis;0.0244303305033559!GO:0007034;vacuolar transport;0.0245633337216854!GO:0004532;exoribonuclease activity;0.0245633337216854!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0245633337216854!GO:0006897;endocytosis;0.0247458278255891!GO:0010324;membrane invagination;0.0247458278255891!GO:0032984;macromolecular complex disassembly;0.0251230713333814!GO:0030508;thiol-disulfide exchange intermediate activity;0.0251606842655594!GO:0006783;heme biosynthetic process;0.0257792061107473!GO:0006739;NADP metabolic process;0.0257792061107473!GO:0051052;regulation of DNA metabolic process;0.0262755542550832!GO:0009161;ribonucleoside monophosphate metabolic process;0.0265682021235216!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0265682021235216!GO:0045893;positive regulation of transcription, DNA-dependent;0.0266388453665855!GO:0003756;protein disulfide isomerase activity;0.0266422143621712!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0266422143621712!GO:0005092;GDP-dissociation inhibitor activity;0.0276983998764582!GO:0030031;cell projection biogenesis;0.0277830742778518!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0279625504324912!GO:0030125;clathrin vesicle coat;0.0279913999394687!GO:0030665;clathrin coated vesicle membrane;0.0279913999394687!GO:0030041;actin filament polymerization;0.028018584381977!GO:0008415;acyltransferase activity;0.029453614797806!GO:0001953;negative regulation of cell-matrix adhesion;0.0296587136099822!GO:0043065;positive regulation of apoptosis;0.0298536544059831!GO:0030032;lamellipodium biogenesis;0.0302081704876314!GO:0000123;histone acetyltransferase complex;0.0302919615920466!GO:0007569;cell aging;0.0304913754965564!GO:0045792;negative regulation of cell size;0.0306664837628942!GO:0004003;ATP-dependent DNA helicase activity;0.0308938119615455!GO:0033559;unsaturated fatty acid metabolic process;0.0316795464473461!GO:0006636;unsaturated fatty acid biosynthetic process;0.0316795464473461!GO:0031123;RNA 3'-end processing;0.0321444420016255!GO:0051098;regulation of binding;0.0325464021039442!GO:0006541;glutamine metabolic process;0.0326340528337511!GO:0045045;secretory pathway;0.0327666541302372!GO:0006650;glycerophospholipid metabolic process;0.0333004488338117!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0339441425561835!GO:0006275;regulation of DNA replication;0.034244631485459!GO:0018193;peptidyl-amino acid modification;0.0344432669897307!GO:0051128;regulation of cellular component organization and biogenesis;0.0349613199654667!GO:0005876;spindle microtubule;0.0349794361385433!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0351401677876818!GO:0046128;purine ribonucleoside metabolic process;0.0357212131507544!GO:0042278;purine nucleoside metabolic process;0.0357212131507544!GO:0006270;DNA replication initiation;0.0357446299541977!GO:0043241;protein complex disassembly;0.0357548812189334!GO:0043624;cellular protein complex disassembly;0.0361369832421394!GO:0016417;S-acyltransferase activity;0.0371716963794734!GO:0051716;cellular response to stimulus;0.0373421736923038!GO:0043068;positive regulation of programmed cell death;0.0373957586245099!GO:0030911;TPR domain binding;0.0374825752245838!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0374825752245838!GO:0051338;regulation of transferase activity;0.0384366581830943!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0384366581830943!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0386310225306892!GO:0030308;negative regulation of cell growth;0.0387243013006243!GO:0008022;protein C-terminus binding;0.0395447426636569!GO:0015035;protein disulfide oxidoreductase activity;0.0395447426636569!GO:0016584;nucleosome positioning;0.0395447426636569!GO:0044437;vacuolar part;0.0396456906470205!GO:0016746;transferase activity, transferring acyl groups;0.0396456906470205!GO:0030503;regulation of cell redox homeostasis;0.0397539317265065!GO:0031970;organelle envelope lumen;0.0397539317265065!GO:0007162;negative regulation of cell adhesion;0.0402024464522721!GO:0030984;kininogen binding;0.0402655917099544!GO:0004213;cathepsin B activity;0.0402655917099544!GO:0006607;NLS-bearing substrate import into nucleus;0.0403001494885543!GO:0006596;polyamine biosynthetic process;0.0403001494885543!GO:0016125;sterol metabolic process;0.0403423326862613!GO:0000922;spindle pole;0.0404507562248643!GO:0022411;cellular component disassembly;0.0405322090287523!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0405322090287523!GO:0005784;translocon complex;0.0409725430457565!GO:0048144;fibroblast proliferation;0.0415200412752328!GO:0048145;regulation of fibroblast proliferation;0.0415200412752328!GO:0044433;cytoplasmic vesicle part;0.0416617632984513!GO:0007033;vacuole organization and biogenesis;0.0416617632984513!GO:0007040;lysosome organization and biogenesis;0.0426746938405031!GO:0051270;regulation of cell motility;0.0429187511072535!GO:0005765;lysosomal membrane;0.043251570766263!GO:0008147;structural constituent of bone;0.0435000214634116!GO:0006310;DNA recombination;0.043673462548012!GO:0000209;protein polyubiquitination;0.0447399802537175!GO:0009889;regulation of biosynthetic process;0.0450644367382372!GO:0050681;androgen receptor binding;0.0453029337087294!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0454694820113253!GO:0010257;NADH dehydrogenase complex assembly;0.0454694820113253!GO:0033108;mitochondrial respiratory chain complex assembly;0.0454694820113253!GO:0031625;ubiquitin protein ligase binding;0.0456108692151393!GO:0043154;negative regulation of caspase activity;0.0458384412003409!GO:0051101;regulation of DNA binding;0.0462647962458043!GO:0031272;regulation of pseudopodium formation;0.046303335554973!GO:0031269;pseudopodium formation;0.046303335554973!GO:0031344;regulation of cell projection organization and biogenesis;0.046303335554973!GO:0031268;pseudopodium organization and biogenesis;0.046303335554973!GO:0031346;positive regulation of cell projection organization and biogenesis;0.046303335554973!GO:0031274;positive regulation of pseudopodium formation;0.046303335554973!GO:0006497;protein amino acid lipidation;0.046303335554973!GO:0051059;NF-kappaB binding;0.0467684275209392!GO:0001952;regulation of cell-matrix adhesion;0.0470887473572418!GO:0030833;regulation of actin filament polymerization;0.0472866102513995!GO:0031371;ubiquitin conjugating enzyme complex;0.0474290943390539!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0474290943390539!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0474290943390539!GO:0009126;purine nucleoside monophosphate metabolic process;0.0474290943390539!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0474290943390539!GO:0045334;clathrin-coated endocytic vesicle;0.0476750177947667!GO:0031326;regulation of cellular biosynthetic process;0.0479990145743734!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0480918558152937!GO:0045039;protein import into mitochondrial inner membrane;0.0480918558152937!GO:0030145;manganese ion binding;0.0481253901492806!GO:0043130;ubiquitin binding;0.0487049759920431!GO:0032182;small conjugating protein binding;0.0487049759920431!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.048909235797336!GO:0006769;nicotinamide metabolic process;0.0494788331514308!GO:0046112;nucleobase biosynthetic process;0.0499034342945785 | |||
|sample_id=11346 | |sample_id=11346 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615 | |top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11346-117G5;search_select_hide=table117:FF:11346-117G5 | |||
}} | }} | ||
Latest revision as of 17:54, 4 June 2020
| Name: | Fibroblast - Dermal, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11379 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11379
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11379
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.122 |
| 10 | 10 | 0.453 |
| 100 | 100 | 0.369 |
| 101 | 101 | 0.646 |
| 102 | 102 | 0.272 |
| 103 | 103 | 0.966 |
| 104 | 104 | 0.315 |
| 105 | 105 | 0.224 |
| 106 | 106 | 0.656 |
| 107 | 107 | 0.298 |
| 108 | 108 | 0.36 |
| 109 | 109 | 0.00222 |
| 11 | 11 | 0.0457 |
| 110 | 110 | 0.0165 |
| 111 | 111 | 0.604 |
| 112 | 112 | 0.882 |
| 113 | 113 | 0.343 |
| 114 | 114 | 0.133 |
| 115 | 115 | 0.725 |
| 116 | 116 | 0.55 |
| 117 | 117 | 0.525 |
| 118 | 118 | 0.885 |
| 119 | 119 | 0.352 |
| 12 | 12 | 0.78 |
| 120 | 120 | 0.103 |
| 121 | 121 | 0.308 |
| 122 | 122 | 0.483 |
| 123 | 123 | 0.0973 |
| 124 | 124 | 0.649 |
| 125 | 125 | 0.574 |
| 126 | 126 | 0.898 |
| 127 | 127 | 0.177 |
| 128 | 128 | 0.382 |
| 129 | 129 | 0.86 |
| 13 | 13 | 0.104 |
| 130 | 130 | 0.0711 |
| 131 | 131 | 0.755 |
| 132 | 132 | 0.903 |
| 133 | 133 | 0.188 |
| 134 | 134 | 0.425 |
| 135 | 135 | 0.671 |
| 136 | 136 | 0.308 |
| 137 | 137 | 0.178 |
| 138 | 138 | 0.762 |
| 139 | 139 | 0.943 |
| 14 | 14 | 0.402 |
| 140 | 140 | 0.508 |
| 141 | 141 | 0.715 |
| 142 | 142 | 0.89 |
| 143 | 143 | 0.0418 |
| 144 | 144 | 0.517 |
| 145 | 145 | 0.0277 |
| 146 | 146 | 0.0337 |
| 147 | 147 | 0.0835 |
| 148 | 148 | 0.507 |
| 149 | 149 | 0.179 |
| 15 | 15 | 0.322 |
| 150 | 150 | 0.279 |
| 151 | 151 | 0.658 |
| 152 | 152 | 0.158 |
| 153 | 153 | 0.479 |
| 154 | 154 | 0.559 |
| 155 | 155 | 0.126 |
| 156 | 156 | 0.369 |
| 157 | 157 | 0.43 |
| 158 | 158 | 0.204 |
| 159 | 159 | 0.488 |
| 16 | 16 | 0.799 |
| 160 | 160 | 0.00282 |
| 161 | 161 | 0.777 |
| 162 | 162 | 0.961 |
| 163 | 163 | 0.985 |
| 164 | 164 | 0.827 |
| 165 | 165 | 0.646 |
| 166 | 166 | 0.736 |
| 167 | 167 | 0.431 |
| 168 | 168 | 0.472 |
| 169 | 169 | 0.0518 |
| 17 | 17 | 0.191 |
| 18 | 18 | 0.0744 |
| 19 | 19 | 0.114 |
| 2 | 2 | 0.78 |
| 20 | 20 | 0.905 |
| 21 | 21 | 0.444 |
| 22 | 22 | 0.21 |
| 23 | 23 | 0.479 |
| 24 | 24 | 0.134 |
| 25 | 25 | 0.66 |
| 26 | 26 | 0.0888 |
| 27 | 27 | 0.288 |
| 28 | 28 | 0.133 |
| 29 | 29 | 0.682 |
| 3 | 3 | 0.485 |
| 30 | 30 | 0.611 |
| 31 | 31 | 0.882 |
| 32 | 32 | 0.817 |
| 33 | 33 | 0.0186 |
| 34 | 34 | 0.375 |
| 35 | 35 | 0.813 |
| 36 | 36 | 0.143 |
| 37 | 37 | 0.193 |
| 38 | 38 | 0.42 |
| 39 | 39 | 0.554 |
| 4 | 4 | 0.636 |
| 40 | 40 | 0.0469 |
| 41 | 41 | 0.586 |
| 42 | 42 | 0.355 |
| 43 | 43 | 0.232 |
| 44 | 44 | 0.407 |
| 45 | 45 | 0.688 |
| 46 | 46 | 0.0965 |
| 47 | 47 | 0.217 |
| 48 | 48 | 0.0493 |
| 49 | 49 | 0.273 |
| 5 | 5 | 0.758 |
| 50 | 50 | 0.329 |
| 51 | 51 | 0.647 |
| 52 | 52 | 0.646 |
| 53 | 53 | 0.784 |
| 54 | 54 | 0.721 |
| 55 | 55 | 0.836 |
| 56 | 56 | 0.503 |
| 57 | 57 | 0.0382 |
| 58 | 58 | 0.958 |
| 59 | 59 | 0.604 |
| 6 | 6 | 0.664 |
| 60 | 60 | 0.872 |
| 61 | 61 | 0.781 |
| 62 | 62 | 0.613 |
| 63 | 63 | 0.112 |
| 64 | 64 | 0.315 |
| 65 | 65 | 0.29 |
| 66 | 66 | 0.0156 |
| 67 | 67 | 0.735 |
| 68 | 68 | 0.0919 |
| 69 | 69 | 0.182 |
| 7 | 7 | 0.541 |
| 70 | 70 | 0.402 |
| 71 | 71 | 0.0177 |
| 72 | 72 | 0.97 |
| 73 | 73 | 0.0134 |
| 74 | 74 | 0.722 |
| 75 | 75 | 0.28 |
| 76 | 76 | 0.928 |
| 77 | 77 | 0.122 |
| 78 | 78 | 0.991 |
| 79 | 79 | 0.356 |
| 8 | 8 | 0.00344 |
| 80 | 80 | 0.579 |
| 81 | 81 | 0.611 |
| 82 | 82 | 0.74 |
| 83 | 83 | 0.551 |
| 84 | 84 | 0.0856 |
| 85 | 85 | 0.584 |
| 86 | 86 | 0.629 |
| 87 | 87 | 0.0439 |
| 88 | 88 | 0.197 |
| 89 | 89 | 0.0963 |
| 9 | 9 | 0.14 |
| 90 | 90 | 0.0715 |
| 91 | 91 | 0.731 |
| 92 | 92 | 0.799 |
| 93 | 93 | 0.328 |
| 94 | 94 | 0.525 |
| 95 | 95 | 0.0265 |
| 96 | 96 | 0.219 |
| 97 | 97 | 0.302 |
| 98 | 98 | 0.0329 |
| 99 | 99 | 9.36232e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11379
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
