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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005260
|DRA_sample_Accession=CAGE@SAMD00005260
|accession_numbers=CAGE;DRX008255;DRR009127;DRZ000552;DRZ001937
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005260
|accession_numbers=CAGE;DRX008255;DRR009127;DRZ000552;DRZ001937;DRZ011902;DRZ013287
|accession_numbers_RNASeq=sRNA-Seq;DRX037214;DRR041580;DRZ007222
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11346
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTCAA.11346
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTCAA.11346
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11346
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTCAA.11346
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTCAA.11346
|name=Fibroblast - Dermal, donor2
|name=Fibroblast - Dermal, donor2
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 101: Line 106:
|top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615
|top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11346-117G5;search_select_hide=table117:FF:11346-117G5
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Fibroblast - Dermal, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11379
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage68 years old adult
sexfemale
age68
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1616
catalog numberCA106-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005260
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11379 CAGE DRX008255 DRR009127
Accession ID Hg19

Library idBAMCTSS
CNhs11379 DRZ000552 DRZ001937
Accession ID Hg38

Library idBAMCTSS
CNhs11379 DRZ011902 DRZ013287
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005260
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.AGTCAA sRNA-Seq DRX037214 DRR041580
Accession ID Hg19

Library idBAMCTSS
SRhi10013.AGTCAA DRZ007222


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.21
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.161
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.516
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0238
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.321
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.247
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.196
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.116
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0392
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.196
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.505
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0292
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.354
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.433
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.254
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11379

Jaspar motifP-value
MA0002.20.323
MA0003.10.429
MA0004.10.195
MA0006.10.786
MA0007.10.00167
MA0009.10.749
MA0014.10.499
MA0017.10.345
MA0018.23.3869e-4
MA0019.10.796
MA0024.10.189
MA0025.10.165
MA0027.10.538
MA0028.10.272
MA0029.10.525
MA0030.10.177
MA0031.10.515
MA0035.20.299
MA0038.10.107
MA0039.20.133
MA0040.10.69
MA0041.10.508
MA0042.10.914
MA0043.11.50085e-4
MA0046.10.981
MA0047.20.168
MA0048.10.245
MA0050.11.50734e-6
MA0051.10.0425
MA0052.10.153
MA0055.10.00202
MA0057.10.0551
MA0058.10.224
MA0059.10.00345
MA0060.10.0112
MA0061.10.567
MA0062.20.754
MA0065.20.315
MA0066.10.161
MA0067.10.0202
MA0068.10.33
MA0069.10.217
MA0070.10.247
MA0071.10.476
MA0072.10.428
MA0073.10.998
MA0074.10.657
MA0076.10.958
MA0077.10.674
MA0078.10.966
MA0079.20.536
MA0080.20.304
MA0081.10.376
MA0083.10.0801
MA0084.10.769
MA0087.10.624
MA0088.10.01
MA0090.10.0818
MA0091.10.229
MA0092.10.361
MA0093.10.264
MA0099.21.71152e-17
MA0100.10.902
MA0101.10.49
MA0102.20.0305
MA0103.10.18
MA0104.20.0903
MA0105.10.367
MA0106.10.00524
MA0107.10.172
MA0108.25.48841e-5
MA0111.10.533
MA0112.20.0135
MA0113.10.00297
MA0114.10.229
MA0115.10.712
MA0116.10.284
MA0117.10.292
MA0119.10.00951
MA0122.10.899
MA0124.10.164
MA0125.10.654
MA0131.10.887
MA0135.10.326
MA0136.10.234
MA0137.20.0723
MA0138.20.979
MA0139.10.488
MA0140.10.0838
MA0141.10.0264
MA0142.10.209
MA0143.10.151
MA0144.10.553
MA0145.10.183
MA0146.10.452
MA0147.10.0181
MA0148.10.51
MA0149.10.00746
MA0150.10.00756
MA0152.10.575
MA0153.10.773
MA0154.10.437
MA0155.10.264
MA0156.10.301
MA0157.10.98
MA0159.10.319
MA0160.10.205
MA0162.10.101
MA0163.10.0275
MA0164.10.713
MA0258.10.327
MA0259.10.0724



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11379

Novel motifP-value
10.122
100.453
1000.369
1010.646
1020.272
1030.966
1040.315
1050.224
1060.656
1070.298
1080.36
1090.00222
110.0457
1100.0165
1110.604
1120.882
1130.343
1140.133
1150.725
1160.55
1170.525
1180.885
1190.352
120.78
1200.103
1210.308
1220.483
1230.0973
1240.649
1250.574
1260.898
1270.177
1280.382
1290.86
130.104
1300.0711
1310.755
1320.903
1330.188
1340.425
1350.671
1360.308
1370.178
1380.762
1390.943
140.402
1400.508
1410.715
1420.89
1430.0418
1440.517
1450.0277
1460.0337
1470.0835
1480.507
1490.179
150.322
1500.279
1510.658
1520.158
1530.479
1540.559
1550.126
1560.369
1570.43
1580.204
1590.488
160.799
1600.00282
1610.777
1620.961
1630.985
1640.827
1650.646
1660.736
1670.431
1680.472
1690.0518
170.191
180.0744
190.114
20.78
200.905
210.444
220.21
230.479
240.134
250.66
260.0888
270.288
280.133
290.682
30.485
300.611
310.882
320.817
330.0186
340.375
350.813
360.143
370.193
380.42
390.554
40.636
400.0469
410.586
420.355
430.232
440.407
450.688
460.0965
470.217
480.0493
490.273
50.758
500.329
510.647
520.646
530.784
540.721
550.836
560.503
570.0382
580.958
590.604
60.664
600.872
610.781
620.613
630.112
640.315
650.29
660.0156
670.735
680.0919
690.182
70.541
700.402
710.0177
720.97
730.0134
740.722
750.28
760.928
770.122
780.991
790.356
80.00344
800.579
810.611
820.74
830.551
840.0856
850.584
860.629
870.0439
880.197
890.0963
90.14
900.0715
910.731
920.799
930.328
940.525
950.0265
960.219
970.302
980.0329
999.36232e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11379


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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