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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002067,UBERON:0002097,UBERON:0002199,UBERON:0002329,UBERON:0002384,UBERON:0002416,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003102,UBERON:0003104,UBERON:0004016,UBERON:0004120,UBERON:0004290,UBERON:0004923,UBERON:0005291,UBERON:0005423,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005260
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002551,CL:0002620
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005260
|accession_numbers=CAGE;DRX008255;DRR009127;DRZ000552;DRZ001937;DRZ011902;DRZ013287
|accession_numbers_RNASeq=sRNA-Seq;DRX037214;DRR041580;DRZ007222
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.88!2122.16!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.53!103.26!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.34!TWIST2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.10!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.39!31.95!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.38!62.18!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.67!PRRX1;;chr20:62680984..62680999,-!p1@SOX18!1.36!28.52!SOX18;;chr8:25902876..25902936,-!p1@EBF2!1.32!19.97!EBF2;;chr7:19157248..19157268,-!p1@TWIST1!1.26!47.35!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!1.25!29.09!DRAP1;;chr21:39870339..39870443,-!p1@ERG!1.21!15.40!ERG;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.69!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.15!14.83!TCF4;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.26!PRRX1;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.55!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.12!20.54!TCF12;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.98!RFX8;;chr11:65667884..65667895,-!p2@FOSL1!1.09!43.93!FOSL1;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.69!TFAP2C;;chr17:59477233..59477263,+!p1@TBX2!1.06!33.09!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.05!46.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.95!HMGA2;;chr17:6926362..6926377,+!p1@BCL6B!1.05!10.27!BCL6B;;chr11:65667846..65667868,-!p1@FOSL1!1.04!266.41!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.64!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.41!ZBTB38;;chr6:34204973..34204990,+!p4@HMGA1!0.98!116.38!HMGA1;;chr8:128748308..128748324,+!p2@MYC!0.97!235.03!MYC;;chr16:86600426..86600441,+!p1@FOXC2!0.97!21.11!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.84!PRRX2;;chr1:170632439..170632465,+!p11@PRRX1!0.93!7.42!PRRX1;;chr1:6479968..6479986,-!p1@HES2!0.93!7.42!HES2;;chr15:83953397..83953425,-!p1@BNC1!0.90!7.99!BNC1;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.27!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.89!6.85!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!0.89!6.85!SOX7;;chr12:96588368..96588394,+!p3@ELK3!0.88!18.26!ELK3;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.40!NR1H3;;chr17:41622765..41622821,-!p2@ETV4!0.88!10.27!ETV4;;chr3:141121847..141121868,+!p5@ZBTB38!0.88!10.27!ZBTB38;;chr3:12330560..12330579,+!p1@PPARG!0.87!7.42!PPARG;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.28!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.86!6.28!RUNX1T1;;chr12:53614115..53614154,-!p1@RARG!0.85!34.23!RARG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.76!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.70!TCF21;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.70!PRRX2;;chr11:65687222..65687240,+!p7@DRAP1!0.82!7.42!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!656.61!HMGA1;;chr11:65686952..65686975,+!p5@DRAP1!0.79!30.81!DRAP1;;chr19:13213511..13213545,-!p2@LYL1!0.79!5.70!LYL1;;chr1:170632959..170632987,+!p4@PRRX1!0.79!5.70!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.79!5.13!TBX20;;chr4:81118647..81118666,+!p1@PRDM8!0.78!6.85!PRDM8;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.96!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.76!23.39!TOX2;;chr17:59477275..59477286,+!p3@TBX2!0.75!6.28!TBX2;;chr17:7493405..7493419,-!p1@SOX15!0.75!4.56!SOX15;;chr8:93074848..93074871,-!p3@RUNX1T1!0.75!4.56!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.56!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.75!4.56!PRRX1;;chr3:12329358..12329393,+!p3@PPARG!0.74!11.98!PPARG;;chr8:128747661..128747703,+!p6@MYC!0.74!6.28!MYC;;chr11:65687243..65687276,+!p8@DRAP1!0.74!6.28!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.13!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.72!4.56!GLIS1;;chr3:12329397..12329433,+!p2@PPARG!0.71!10.27!PPARG;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.99!ZFP106;;chr11:46299199..46299233,+!p1@CREB3L1!0.70!23.39!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.70!3.99!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.68!6.28!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.56!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.65!91.85!AEBP1;;chr16:4322832..4322907,-!p1@TFAP4!0.65!30.24!TFAP4;;chr11:47279248..47279264,+!p3@NR1H3!0.65!3.99!NR1H3;;chr5:2751785..2751808,-!p2@IRX2!0.65!3.42!IRX2;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.42!RFX8;;chr2:223163706..223163730,-!p1@PAX3!0.65!3.42!PAX3;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.42!FOXC2;;chr1:170633058..170633084,+!p5@PRRX1!0.65!3.42!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.65!3.42!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!0.64!11.41!ZHX3;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.97!PHB2;;chr5:321810..321877,+!p1@AHRR!0.63!11.98!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.85!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.70!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.63!5.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.13!SATB2;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.56!TOX2;;chr8:128747757..128747800,+!p7@MYC!0.62!4.56!MYC;;chr15:96869114..96869160,+!p11@NR2F2!0.62!4.56!NR2F2;;chr1:8938766..8938774,-!p2@ENO1!0.61!255.57!ENO1;;chr14:611161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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor2.CNhs11379.11346-117G5.hg38.nobarcode.ctss.bed.gz
|id=FF:11346-117G5
|id=FF:11346-117G5
|is_a=EFO:0002091;;FF:0000002;;FF:0000062;;FF:0000210
|is_a=EFO:0002091;;FF:0000062
|is_obsolete=
|library_id=CNhs11379
|library_id_phase_based=2:CNhs11379
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11346
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTCAA.11346
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11346
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTCAA.11346
|name=Fibroblast - Dermal, donor2
|name=Fibroblast - Dermal, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11379,LSID771,release012,COMPLETED
|profile_hcage=CNhs11379,LSID771,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.152999621921016,-0.282403560576942,0,0,0,0,0,0,0,0,0.196030148402437,0,0,0,0,-0.153323010348428,0,0,0,0.21659803436627,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0478846427647946,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.196030148402437,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0879997793936553,0,0,0,-0.00564320679025099,0.0468644280405482,0,0,0,0,0.232569884100803,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0016414802787573,0,0,0,0.0171773729327378,0.125268551912235,0,0,0,0,0,0
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|rna_box=117
|rna_box=117
|rna_catalog_number=CA106-R10a
|rna_catalog_number=CA106-R10a
Line 55: Line 82:
|rna_tube_id=117G5
|rna_tube_id=117G5
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.AGTCAA
|sample_age=68
|sample_age=68
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=A
|sample_ethnicity=A
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.50971768856247e-242!GO:0005737;cytoplasm;8.45066017276836e-200!GO:0043226;organelle;3.91972623153604e-188!GO:0043229;intracellular organelle;7.31028347610082e-188!GO:0043231;intracellular membrane-bound organelle;6.35222010387178e-183!GO:0043227;membrane-bound organelle;1.475772810078e-182!GO:0044422;organelle part;1.22265631796439e-150!GO:0044446;intracellular organelle part;2.53863581979976e-149!GO:0044444;cytoplasmic part;2.62808026367263e-141!GO:0032991;macromolecular complex;1.33438283190123e-105!GO:0030529;ribonucleoprotein complex;8.43074471808226e-96!GO:0044237;cellular metabolic process;1.10218198836742e-87!GO:0044238;primary metabolic process;5.14950898132776e-87!GO:0005739;mitochondrion;6.58329603520689e-83!GO:0043233;organelle lumen;2.17563004653662e-81!GO:0031974;membrane-enclosed lumen;2.17563004653662e-81!GO:0005515;protein binding;2.2843533592062e-79!GO:0043170;macromolecule metabolic process;6.93140153529145e-76!GO:0044428;nuclear part;2.40263114204941e-74!GO:0003723;RNA binding;4.50930165688294e-71!GO:0005634;nucleus;2.59783047045616e-67!GO:0005840;ribosome;2.76743114413097e-59!GO:0006412;translation;3.45367218253085e-56!GO:0044429;mitochondrial part;1.62802695771518e-54!GO:0006396;RNA processing;4.03704098934246e-54!GO:0009058;biosynthetic process;5.24612357131385e-52!GO:0003735;structural constituent of ribosome;8.84119595613067e-52!GO:0043234;protein complex;1.41353078422427e-51!GO:0019538;protein metabolic process;6.7740155955375e-51!GO:0031090;organelle membrane;1.87609591311739e-50!GO:0044249;cellular biosynthetic process;1.22028868556863e-49!GO:0016043;cellular component organization and biogenesis;2.39626370544065e-47!GO:0031981;nuclear lumen;1.20904998350396e-46!GO:0031967;organelle envelope;5.16629478781812e-46!GO:0031975;envelope;1.35725703957219e-45!GO:0044260;cellular macromolecule metabolic process;9.80809445680396e-45!GO:0044267;cellular protein metabolic process;1.49113524215717e-44!GO:0033279;ribosomal subunit;6.81155472505812e-44!GO:0009059;macromolecule biosynthetic process;7.63287614361443e-44!GO:0005829;cytosol;1.37235350081742e-42!GO:0015031;protein transport;4.31349069910678e-40!GO:0033036;macromolecule localization;1.17422986388537e-39!GO:0043228;non-membrane-bound organelle;6.25968023513749e-39!GO:0043232;intracellular non-membrane-bound organelle;6.25968023513749e-39!GO:0043283;biopolymer metabolic process;8.45485314566331e-38!GO:0045184;establishment of protein localization;7.06339555245472e-37!GO:0016071;mRNA metabolic process;7.06339555245472e-37!GO:0008104;protein localization;1.57131394076451e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.00422128661408e-35!GO:0010467;gene expression;1.7306614521259e-35!GO:0008380;RNA splicing;2.03957934865398e-35!GO:0005740;mitochondrial envelope;2.73609678530201e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.851656379683e-34!GO:0006996;organelle organization and biogenesis;1.27294671141446e-33!GO:0046907;intracellular transport;6.56880524218676e-33!GO:0006397;mRNA processing;1.14000897791229e-32!GO:0065003;macromolecular complex assembly;4.06412147882613e-32!GO:0031966;mitochondrial membrane;4.35236017158849e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.27286793515929e-31!GO:0019866;organelle inner membrane;1.0231993859647e-30!GO:0005743;mitochondrial inner membrane;4.15141889603726e-29!GO:0022607;cellular component assembly;6.47004572362289e-29!GO:0006886;intracellular protein transport;2.02227610129274e-28!GO:0006259;DNA metabolic process;3.09020329541971e-28!GO:0005654;nucleoplasm;2.3237998327093e-26!GO:0005681;spliceosome;2.87016301610273e-26!GO:0031980;mitochondrial lumen;7.75892996100087e-25!GO:0005759;mitochondrial matrix;7.75892996100087e-25!GO:0044445;cytosolic part;1.57852317221877e-24!GO:0015934;large ribosomal subunit;8.8194631508068e-24!GO:0005730;nucleolus;3.70952864928752e-23!GO:0044455;mitochondrial membrane part;1.12324187057646e-22!GO:0006119;oxidative phosphorylation;3.95896213001647e-22!GO:0000166;nucleotide binding;1.48099855492365e-21!GO:0044451;nucleoplasm part;1.75331094784135e-21!GO:0051649;establishment of cellular localization;3.11839930372594e-21!GO:0015935;small ribosomal subunit;3.86194256938385e-21!GO:0007049;cell cycle;4.78916661352883e-21!GO:0051641;cellular localization;4.88935727689544e-21!GO:0016462;pyrophosphatase activity;2.51573216251228e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.79833285518469e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.97592372433635e-20!GO:0017111;nucleoside-triphosphatase activity;2.20158748929843e-19!GO:0048770;pigment granule;6.4570339145857e-19!GO:0042470;melanosome;6.4570339145857e-19!GO:0006457;protein folding;6.66853401324873e-19!GO:0042254;ribosome biogenesis and assembly;9.85306220466872e-19!GO:0012505;endomembrane system;9.92843823658124e-19!GO:0051186;cofactor metabolic process;1.93210005104984e-18!GO:0016874;ligase activity;2.56482479977575e-18!GO:0005746;mitochondrial respiratory chain;9.05141838608027e-18!GO:0022618;protein-RNA complex assembly;2.82559560618219e-17!GO:0005761;mitochondrial ribosome;3.95736664327034e-17!GO:0000313;organellar ribosome;3.95736664327034e-17!GO:0022402;cell cycle process;8.43525927813853e-17!GO:0000278;mitotic cell cycle;9.48994129047948e-17!GO:0003676;nucleic acid binding;1.42564039955224e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.75280528585323e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.94180870919146e-16!GO:0005783;endoplasmic reticulum;5.02730712081135e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.39240630326954e-16!GO:0008134;transcription factor binding;2.08546037970428e-15!GO:0044265;cellular macromolecule catabolic process;2.15224282526133e-15!GO:0006605;protein targeting;2.46842983269328e-15!GO:0017076;purine nucleotide binding;3.75564421998191e-15!GO:0043285;biopolymer catabolic process;4.21364984178346e-15!GO:0008135;translation factor activity, nucleic acid binding;4.82235504949171e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.92535104081833e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.22958000878801e-15!GO:0003954;NADH dehydrogenase activity;6.22958000878801e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.22958000878801e-15!GO:0009057;macromolecule catabolic process;6.40973522742243e-15!GO:0044248;cellular catabolic process;7.04545479903265e-15!GO:0006974;response to DNA damage stimulus;8.02956090315215e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.39475091473104e-14!GO:0000375;RNA splicing, via transesterification reactions;1.39475091473104e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.39475091473104e-14!GO:0032553;ribonucleotide binding;1.41097151891865e-14!GO:0032555;purine ribonucleotide binding;1.41097151891865e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.2836181963548e-14!GO:0044432;endoplasmic reticulum part;2.68108830068309e-14!GO:0006512;ubiquitin cycle;3.95746388334985e-14!GO:0006732;coenzyme metabolic process;7.8987694849486e-14!GO:0051082;unfolded protein binding;1.1748243663641e-13!GO:0000087;M phase of mitotic cell cycle;1.88444517592091e-13!GO:0009055;electron carrier activity;2.17933458149261e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.17933458149261e-13!GO:0045271;respiratory chain complex I;2.17933458149261e-13!GO:0005747;mitochondrial respiratory chain complex I;2.17933458149261e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.17933458149261e-13!GO:0006399;tRNA metabolic process;2.23773574394317e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.31018774695011e-13!GO:0042773;ATP synthesis coupled electron transport;2.31018774695011e-13!GO:0007067;mitosis;3.05159882357616e-13!GO:0019941;modification-dependent protein catabolic process;3.14811212261133e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.14811212261133e-13!GO:0005794;Golgi apparatus;3.56152999348892e-13!GO:0006364;rRNA processing;3.62112404024097e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.73942072336628e-13!GO:0044257;cellular protein catabolic process;4.88257912774328e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.09354956098341e-13!GO:0030554;adenyl nucleotide binding;9.32810158102184e-13!GO:0005635;nuclear envelope;9.40761983520719e-13!GO:0016072;rRNA metabolic process;1.04779677353135e-12!GO:0005524;ATP binding;1.37621950216254e-12!GO:0016070;RNA metabolic process;1.94999747328572e-12!GO:0006260;DNA replication;2.05323191499829e-12!GO:0048193;Golgi vesicle transport;2.05581022450171e-12!GO:0030163;protein catabolic process;2.09403456904661e-12!GO:0005694;chromosome;2.25326127014637e-12!GO:0032559;adenyl ribonucleotide binding;2.54541801148763e-12!GO:0044453;nuclear membrane part;2.79259532684674e-12!GO:0031965;nuclear membrane;4.51802207806368e-12!GO:0009719;response to endogenous stimulus;4.96087437062244e-12!GO:0016192;vesicle-mediated transport;6.4785786207213e-12!GO:0043412;biopolymer modification;1.11826688456509e-11!GO:0006281;DNA repair;1.17301550464207e-11!GO:0003743;translation initiation factor activity;1.54377001236833e-11!GO:0022403;cell cycle phase;2.20810641110707e-11!GO:0044427;chromosomal part;3.20958309787186e-11!GO:0009259;ribonucleotide metabolic process;3.34829495274923e-11!GO:0051276;chromosome organization and biogenesis;4.37633758478715e-11!GO:0006163;purine nucleotide metabolic process;6.15822987539792e-11!GO:0042623;ATPase activity, coupled;6.75664893836573e-11!GO:0016604;nuclear body;6.79603590513717e-11!GO:0006913;nucleocytoplasmic transport;6.82118466757539e-11!GO:0006413;translational initiation;9.50058693108906e-11!GO:0016887;ATPase activity;1.14957865824069e-10!GO:0012501;programmed cell death;1.25817528697138e-10!GO:0005643;nuclear pore;1.32727830799531e-10!GO:0005793;ER-Golgi intermediate compartment;1.34863370822339e-10!GO:0051169;nuclear transport;1.47199894933464e-10!GO:0006915;apoptosis;1.57305777790075e-10!GO:0016491;oxidoreductase activity;1.86837900661724e-10!GO:0003712;transcription cofactor activity;2.90444875826741e-10!GO:0009150;purine ribonucleotide metabolic process;2.90795074554014e-10!GO:0006446;regulation of translational initiation;3.62509646344544e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.90876781617607e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.90876781617607e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.90876781617607e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.90927377147467e-10!GO:0006164;purine nucleotide biosynthetic process;3.90927377147467e-10!GO:0006464;protein modification process;4.05606899474405e-10!GO:0008565;protein transporter activity;4.76812770118523e-10!GO:0009260;ribonucleotide biosynthetic process;5.45888392543699e-10!GO:0000074;regulation of progression through cell cycle;5.73416305547226e-10!GO:0051726;regulation of cell cycle;5.83519633904924e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.88716462291432e-10!GO:0065002;intracellular protein transport across a membrane;7.96213328915219e-10!GO:0043038;amino acid activation;9.24508546755495e-10!GO:0006418;tRNA aminoacylation for protein translation;9.24508546755495e-10!GO:0043039;tRNA aminoacylation;9.24508546755495e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.09069946068464e-09!GO:0006323;DNA packaging;1.09103757737783e-09!GO:0005789;endoplasmic reticulum membrane;1.45057702927378e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.51230883601972e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.82067603966386e-09!GO:0051301;cell division;1.84303984768783e-09!GO:0051188;cofactor biosynthetic process;2.35351509117651e-09!GO:0008219;cell death;2.4832273574271e-09!GO:0016265;death;2.4832273574271e-09!GO:0046930;pore complex;2.65143228151928e-09!GO:0000279;M phase;2.92285968929751e-09!GO:0006461;protein complex assembly;3.101806073142e-09!GO:0009056;catabolic process;3.93967977161428e-09!GO:0017038;protein import;4.32668771185935e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.44841958064876e-09!GO:0065004;protein-DNA complex assembly;4.77785211462911e-09!GO:0008026;ATP-dependent helicase activity;5.37277968228271e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.14306716087635e-09!GO:0009060;aerobic respiration;8.41212677318222e-09!GO:0009199;ribonucleoside triphosphate metabolic process;8.45611093538474e-09!GO:0007005;mitochondrion organization and biogenesis;1.09028580727452e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.11994994105626e-08!GO:0009141;nucleoside triphosphate metabolic process;1.14430770008766e-08!GO:0043687;post-translational protein modification;1.3269746538254e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.8106403488653e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.8106403488653e-08!GO:0004386;helicase activity;1.8604966025493e-08!GO:0016607;nuclear speck;1.90066234125965e-08!GO:0006333;chromatin assembly or disassembly;2.08686177278187e-08!GO:0008639;small protein conjugating enzyme activity;2.33509577417912e-08!GO:0009117;nucleotide metabolic process;3.16396211879772e-08!GO:0050657;nucleic acid transport;3.27770808818498e-08!GO:0051236;establishment of RNA localization;3.27770808818498e-08!GO:0050658;RNA transport;3.27770808818498e-08!GO:0006403;RNA localization;3.60678156800122e-08!GO:0019787;small conjugating protein ligase activity;3.88189304480876e-08!GO:0015986;ATP synthesis coupled proton transport;3.97324425580813e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.97324425580813e-08!GO:0016740;transferase activity;4.30644908792959e-08!GO:0004842;ubiquitin-protein ligase activity;5.19317499918034e-08!GO:0045333;cellular respiration;5.71008168973626e-08!GO:0006334;nucleosome assembly;7.109772778613e-08!GO:0046034;ATP metabolic process;7.29278159027586e-08!GO:0016779;nucleotidyltransferase activity;8.11884209356095e-08!GO:0000785;chromatin;8.39012294151944e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.88547187155216e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.88547187155216e-08!GO:0048523;negative regulation of cellular process;9.16191668968179e-08!GO:0051246;regulation of protein metabolic process;1.03165649980437e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.07980615795281e-07!GO:0006366;transcription from RNA polymerase II promoter;1.52956281504355e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.9266995114362e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.9266995114362e-07!GO:0016881;acid-amino acid ligase activity;2.08376680920211e-07!GO:0031497;chromatin assembly;2.16500400719656e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.25279222336141e-07!GO:0003697;single-stranded DNA binding;2.33797743020207e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.3955904344125e-07!GO:0019829;cation-transporting ATPase activity;2.41793622227486e-07!GO:0048475;coated membrane;2.53664270978182e-07!GO:0030117;membrane coat;2.53664270978182e-07!GO:0005788;endoplasmic reticulum lumen;2.670128152242e-07!GO:0006099;tricarboxylic acid cycle;2.9273864778192e-07!GO:0046356;acetyl-CoA catabolic process;2.9273864778192e-07!GO:0030120;vesicle coat;3.38732550483364e-07!GO:0030662;coated vesicle membrane;3.38732550483364e-07!GO:0009108;coenzyme biosynthetic process;3.67896131667807e-07!GO:0006091;generation of precursor metabolites and energy;3.93566859393454e-07!GO:0051187;cofactor catabolic process;4.2191339778922e-07!GO:0006084;acetyl-CoA metabolic process;5.92447774677081e-07!GO:0003924;GTPase activity;5.96986113183177e-07!GO:0005768;endosome;6.88117405749991e-07!GO:0006754;ATP biosynthetic process;6.9224137992353e-07!GO:0006753;nucleoside phosphate metabolic process;6.9224137992353e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.95650195897592e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.96545972063777e-07!GO:0005762;mitochondrial large ribosomal subunit;9.61568284539995e-07!GO:0000315;organellar large ribosomal subunit;9.61568284539995e-07!GO:0042981;regulation of apoptosis;9.79795906378757e-07!GO:0009109;coenzyme catabolic process;1.11846899672092e-06!GO:0043067;regulation of programmed cell death;1.32379829635794e-06!GO:0016853;isomerase activity;1.49451438237219e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.74642337741903e-06!GO:0051028;mRNA transport;1.88324740326252e-06!GO:0045259;proton-transporting ATP synthase complex;1.98537932384508e-06!GO:0000245;spliceosome assembly;2.17489809196696e-06!GO:0003899;DNA-directed RNA polymerase activity;2.54075954438748e-06!GO:0043566;structure-specific DNA binding;3.1403221186741e-06!GO:0048519;negative regulation of biological process;3.1797573389907e-06!GO:0006916;anti-apoptosis;3.29061681440438e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.79878194699341e-06!GO:0044431;Golgi apparatus part;4.40721259151121e-06!GO:0015630;microtubule cytoskeleton;4.41571640266958e-06!GO:0051170;nuclear import;4.48310458126628e-06!GO:0005667;transcription factor complex;4.62456458373195e-06!GO:0016787;hydrolase activity;4.7555200274906e-06!GO:0043069;negative regulation of programmed cell death;4.78093685378365e-06!GO:0044440;endosomal part;5.0401044280766e-06!GO:0010008;endosome membrane;5.0401044280766e-06!GO:0031988;membrane-bound vesicle;5.0401044280766e-06!GO:0031252;leading edge;5.53843046830379e-06!GO:0003724;RNA helicase activity;5.60743739318274e-06!GO:0006752;group transfer coenzyme metabolic process;6.7657554600759e-06!GO:0043066;negative regulation of apoptosis;7.18116198500201e-06!GO:0006606;protein import into nucleus;7.67046729885494e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.02965358233698e-05!GO:0032446;protein modification by small protein conjugation;1.03784556300776e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.06541572430472e-05!GO:0016567;protein ubiquitination;1.12747330818658e-05!GO:0004298;threonine endopeptidase activity;1.2007978259951e-05!GO:0045454;cell redox homeostasis;1.78833084290399e-05!GO:0050794;regulation of cellular process;2.22410517062601e-05!GO:0003713;transcription coactivator activity;2.39715918523804e-05!GO:0003714;transcription corepressor activity;3.1990044429482e-05!GO:0000151;ubiquitin ligase complex;3.32859409602739e-05!GO:0005770;late endosome;3.38555544382431e-05!GO:0016564;transcription repressor activity;3.49995724051789e-05!GO:0008033;tRNA processing;3.49995724051789e-05!GO:0009165;nucleotide biosynthetic process;3.55388814615995e-05!GO:0005819;spindle;3.62342498660567e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.93240227308264e-05!GO:0005525;GTP binding;4.03475698087769e-05!GO:0006261;DNA-dependent DNA replication;4.25390029750637e-05!GO:0031410;cytoplasmic vesicle;4.31380034649891e-05!GO:0031982;vesicle;4.42560004053065e-05!GO:0005813;centrosome;4.44273783349207e-05!GO:0008654;phospholipid biosynthetic process;4.72949518136512e-05!GO:0016568;chromatin modification;5.02852374188837e-05!GO:0031968;organelle outer membrane;5.08134942797662e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.08285682861839e-05!GO:0006793;phosphorus metabolic process;5.27965233672865e-05!GO:0006796;phosphate metabolic process;5.27965233672865e-05!GO:0000314;organellar small ribosomal subunit;5.36209410700773e-05!GO:0005763;mitochondrial small ribosomal subunit;5.36209410700773e-05!GO:0005773;vacuole;5.77658322174493e-05!GO:0019867;outer membrane;5.77658322174493e-05!GO:0006613;cotranslational protein targeting to membrane;5.91945405245325e-05!GO:0016563;transcription activator activity;6.00243143038413e-05!GO:0043623;cellular protein complex assembly;6.4403667662132e-05!GO:0016859;cis-trans isomerase activity;6.55876283571749e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.7934229645543e-05!GO:0044452;nucleolar part;7.19184446945012e-05!GO:0030867;rough endoplasmic reticulum membrane;7.55173661744639e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.59075944925649e-05!GO:0000139;Golgi membrane;8.26479057385361e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.89097276495131e-05!GO:0008186;RNA-dependent ATPase activity;9.4540031414279e-05!GO:0005815;microtubule organizing center;0.000117204222938028!GO:0043021;ribonucleoprotein binding;0.000131853785229303!GO:0006082;organic acid metabolic process;0.0001401806394651!GO:0000786;nucleosome;0.000140458612150524!GO:0051087;chaperone binding;0.000141975628849289!GO:0005741;mitochondrial outer membrane;0.000147281553547536!GO:0019752;carboxylic acid metabolic process;0.000147281553547536!GO:0016310;phosphorylation;0.000149506388654171!GO:0051329;interphase of mitotic cell cycle;0.000149506388654171!GO:0005905;coated pit;0.000157079685343506!GO:0015980;energy derivation by oxidation of organic compounds;0.000158404845204893!GO:0006626;protein targeting to mitochondrion;0.000158835501963624!GO:0050662;coenzyme binding;0.000160766277559273!GO:0045786;negative regulation of progression through cell cycle;0.000168070012464734!GO:0005048;signal sequence binding;0.000168589019348877!GO:0048522;positive regulation of cellular process;0.000189123915201557!GO:0030880;RNA polymerase complex;0.000198649041913175!GO:0051325;interphase;0.000204530133876068!GO:0043681;protein import into mitochondrion;0.000204530133876068!GO:0033116;ER-Golgi intermediate compartment membrane;0.000221018721011786!GO:0031324;negative regulation of cellular metabolic process;0.000221887881131634!GO:0000323;lytic vacuole;0.000224710644034718!GO:0005764;lysosome;0.000224710644034718!GO:0051168;nuclear export;0.00023379825532465!GO:0006839;mitochondrial transport;0.000237962367737434!GO:0051540;metal cluster binding;0.000241868548082949!GO:0051536;iron-sulfur cluster binding;0.000241868548082949!GO:0004004;ATP-dependent RNA helicase activity;0.000248653317307308!GO:0051427;hormone receptor binding;0.000248653317307308!GO:0005798;Golgi-associated vesicle;0.000254832796572012!GO:0046483;heterocycle metabolic process;0.00025724716549595!GO:0019899;enzyme binding;0.00025724716549595!GO:0030036;actin cytoskeleton organization and biogenesis;0.000268677409518181!GO:0016126;sterol biosynthetic process;0.000280004573231256!GO:0005657;replication fork;0.000296256571025533!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000296256571025533!GO:0005769;early endosome;0.000297212340491334!GO:0007051;spindle organization and biogenesis;0.000345192768288538!GO:0032561;guanyl ribonucleotide binding;0.000345267723744178!GO:0019001;guanyl nucleotide binding;0.000345267723744178!GO:0000059;protein import into nucleus, docking;0.000362160012134782!GO:0005885;Arp2/3 protein complex;0.000411052943116696!GO:0007006;mitochondrial membrane organization and biogenesis;0.000449823470080735!GO:0065009;regulation of a molecular function;0.000463247128171205!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000479433215198095!GO:0006414;translational elongation;0.000481422161927927!GO:0006520;amino acid metabolic process;0.000493388497114265!GO:0035257;nuclear hormone receptor binding;0.000517409832262803!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000537372890994229!GO:0000428;DNA-directed RNA polymerase complex;0.000537372890994229!GO:0007010;cytoskeleton organization and biogenesis;0.000585679821971175!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000603529616342824!GO:0008168;methyltransferase activity;0.000608039379281266!GO:0006383;transcription from RNA polymerase III promoter;0.000639724165752761!GO:0005791;rough endoplasmic reticulum;0.000642309371849979!GO:0016741;transferase activity, transferring one-carbon groups;0.000642668828650059!GO:0000075;cell cycle checkpoint;0.000643141837338337!GO:0008632;apoptotic program;0.000646422079690524!GO:0016044;membrane organization and biogenesis;0.000649427945389551!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0006644227443469!GO:0003684;damaged DNA binding;0.000679254918894292!GO:0008361;regulation of cell size;0.000695425916492917!GO:0019843;rRNA binding;0.000695717001797071!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000712488998382492!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000789196443215981!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000789196443215981!GO:0008250;oligosaccharyl transferase complex;0.000854939182347552!GO:0016049;cell growth;0.000878783127253151!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000894016199535998!GO:0042802;identical protein binding;0.00095872122565474!GO:0051920;peroxiredoxin activity;0.000959810703947456!GO:0009892;negative regulation of metabolic process;0.000986293181308692!GO:0006950;response to stress;0.000987881511097377!GO:0008610;lipid biosynthetic process;0.00100778000946474!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00102298876342936!GO:0006612;protein targeting to membrane;0.0011053008737247!GO:0046474;glycerophospholipid biosynthetic process;0.0011053008737247!GO:0008094;DNA-dependent ATPase activity;0.00114268561810114!GO:0001558;regulation of cell growth;0.00115536251516169!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00118840227396341!GO:0051252;regulation of RNA metabolic process;0.00119574203821587!GO:0030663;COPI coated vesicle membrane;0.00123305540901308!GO:0030126;COPI vesicle coat;0.00123305540901308!GO:0000775;chromosome, pericentric region;0.00124212390410583!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00124284622331159!GO:0004576;oligosaccharyl transferase activity;0.00124284622331159!GO:0048037;cofactor binding;0.00126318141137709!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00129348040991761!GO:0000049;tRNA binding;0.00130432708445114!GO:0006695;cholesterol biosynthetic process;0.00135578123909823!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00142471057256121!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00142471057256121!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00142471057256121!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00152570315066479!GO:0044262;cellular carbohydrate metabolic process;0.00157092205912812!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00162000912679094!GO:0030029;actin filament-based process;0.00168885446279128!GO:0031072;heat shock protein binding;0.00171051809345385!GO:0050789;regulation of biological process;0.00172946145996014!GO:0043284;biopolymer biosynthetic process;0.00181104179676052!GO:0005684;U2-dependent spliceosome;0.00181916890591827!GO:0051287;NAD binding;0.00183246259451261!GO:0006118;electron transport;0.00184814602270245!GO:0051789;response to protein stimulus;0.00189206169382618!GO:0006986;response to unfolded protein;0.00189206169382618!GO:0033673;negative regulation of kinase activity;0.00191635960647665!GO:0006469;negative regulation of protein kinase activity;0.00191635960647665!GO:0032508;DNA duplex unwinding;0.00196897839659573!GO:0032392;DNA geometric change;0.00196897839659573!GO:0030132;clathrin coat of coated pit;0.00200339764833529!GO:0051348;negative regulation of transferase activity;0.00201571100544616!GO:0008652;amino acid biosynthetic process;0.00203130532760414!GO:0043488;regulation of mRNA stability;0.00238438635506034!GO:0043487;regulation of RNA stability;0.00238438635506034!GO:0006401;RNA catabolic process;0.00240299621769286!GO:0007243;protein kinase cascade;0.00240342931406471!GO:0016363;nuclear matrix;0.00243476070079461!GO:0030137;COPI-coated vesicle;0.00254673709113434!GO:0051539;4 iron, 4 sulfur cluster binding;0.0026732076415013!GO:0015036;disulfide oxidoreductase activity;0.00269993703221072!GO:0006891;intra-Golgi vesicle-mediated transport;0.00273962727911214!GO:0003729;mRNA binding;0.00283064301459394!GO:0006402;mRNA catabolic process;0.00302052879959553!GO:0018196;peptidyl-asparagine modification;0.00306722732813469!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00306722732813469!GO:0007088;regulation of mitosis;0.00314101470721189!GO:0030118;clathrin coat;0.00318394466665464!GO:0006595;polyamine metabolic process;0.00345913613673522!GO:0003711;transcription elongation regulator activity;0.00353198806553544!GO:0006778;porphyrin metabolic process;0.00353198806553544!GO:0033013;tetrapyrrole metabolic process;0.00353198806553544!GO:0030133;transport vesicle;0.00353198806553544!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0035443513879739!GO:0015399;primary active transmembrane transporter activity;0.0035443513879739!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00356664777972549!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00356664777972549!GO:0006268;DNA unwinding during replication;0.00401701953504418!GO:0046467;membrane lipid biosynthetic process;0.00437095495366428!GO:0017166;vinculin binding;0.00457509834389516!GO:0006611;protein export from nucleus;0.00467237123023575!GO:0043086;negative regulation of catalytic activity;0.00474812964378641!GO:0016481;negative regulation of transcription;0.00475727262284345!GO:0048487;beta-tubulin binding;0.00476476744691805!GO:0015992;proton transport;0.00478007241437455!GO:0006807;nitrogen compound metabolic process;0.00509672913056239!GO:0008139;nuclear localization sequence binding;0.00525011498017771!GO:0030027;lamellipodium;0.00528808017234612!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00534209220876665!GO:0006289;nucleotide-excision repair;0.00541579927542256!GO:0006740;NADPH regeneration;0.00541579927542256!GO:0006098;pentose-phosphate shunt;0.00541579927542256!GO:0006519;amino acid and derivative metabolic process;0.00544731872689738!GO:0004177;aminopeptidase activity;0.0055620420686769!GO:0019206;nucleoside kinase activity;0.00575381222846754!GO:0006979;response to oxidative stress;0.00579501508958476!GO:0006818;hydrogen transport;0.00607598384099101!GO:0003678;DNA helicase activity;0.00611031047831845!GO:0009112;nucleobase metabolic process;0.00613175827972158!GO:0016407;acetyltransferase activity;0.0062100306262669!GO:0004527;exonuclease activity;0.0062100306262669!GO:0008092;cytoskeletal protein binding;0.0062100306262669!GO:0006405;RNA export from nucleus;0.00651593668308552!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00657388770233004!GO:0015002;heme-copper terminal oxidase activity;0.00657388770233004!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00657388770233004!GO:0004129;cytochrome-c oxidase activity;0.00657388770233004!GO:0008180;signalosome;0.00660162414233466!GO:0022890;inorganic cation transmembrane transporter activity;0.00661918952290269!GO:0015631;tubulin binding;0.00670344081218729!GO:0004518;nuclease activity;0.00719391252421321!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00735708514804172!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00745153030377482!GO:0000178;exosome (RNase complex);0.00745153030377482!GO:0009308;amine metabolic process;0.00767866729402718!GO:0009303;rRNA transcription;0.00769141735642529!GO:0050790;regulation of catalytic activity;0.00772468273817893!GO:0048471;perinuclear region of cytoplasm;0.00779878411063135!GO:0048500;signal recognition particle;0.00781656833062158!GO:0031124;mRNA 3'-end processing;0.00784519475545261!GO:0047485;protein N-terminus binding;0.00789291316461325!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00815387463391566!GO:0035258;steroid hormone receptor binding;0.00891801722045803!GO:0008637;apoptotic mitochondrial changes;0.00893861538420984!GO:0042168;heme metabolic process;0.00903034077296939!GO:0005096;GTPase activator activity;0.00929483762292828!GO:0031902;late endosome membrane;0.00934090777546862!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00943246885267429!GO:0005832;chaperonin-containing T-complex;0.00946269042810982!GO:0048518;positive regulation of biological process;0.00946269042810982!GO:0030658;transport vesicle membrane;0.00948679285898342!GO:0008047;enzyme activator activity;0.00952459032011624!GO:0005874;microtubule;0.00962488187217904!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00971991163381868!GO:0006779;porphyrin biosynthetic process;0.0105030991290793!GO:0033014;tetrapyrrole biosynthetic process;0.0105030991290793!GO:0008312;7S RNA binding;0.0108025060197551!GO:0046489;phosphoinositide biosynthetic process;0.0108347486718929!GO:0000082;G1/S transition of mitotic cell cycle;0.010840084877708!GO:0003746;translation elongation factor activity;0.0110045338993807!GO:0030127;COPII vesicle coat;0.0114565089464635!GO:0012507;ER to Golgi transport vesicle membrane;0.0114565089464635!GO:0043022;ribosome binding;0.0125081405570218!GO:0009451;RNA modification;0.0130675973573568!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0130767369096717!GO:0005862;muscle thin filament tropomyosin;0.0130775630818021!GO:0003682;chromatin binding;0.0131997336926642!GO:0000096;sulfur amino acid metabolic process;0.0132808780747522!GO:0006144;purine base metabolic process;0.0133736243558309!GO:0000339;RNA cap binding;0.0135784816699599!GO:0030119;AP-type membrane coat adaptor complex;0.0136153658443999!GO:0030134;ER to Golgi transport vesicle;0.0136839806427938!GO:0003690;double-stranded DNA binding;0.0137191329311046!GO:0045941;positive regulation of transcription;0.0138936177109352!GO:0043189;H4/H2A histone acetyltransferase complex;0.014040398355763!GO:0016408;C-acyltransferase activity;0.0143381472891889!GO:0005669;transcription factor TFIID complex;0.0144123533610319!GO:0016251;general RNA polymerase II transcription factor activity;0.014489300664961!GO:0001726;ruffle;0.0146163100862401!GO:0006302;double-strand break repair;0.0151273923423366!GO:0009116;nucleoside metabolic process;0.0151653886439794!GO:0030659;cytoplasmic vesicle membrane;0.0153546019493485!GO:0006007;glucose catabolic process;0.015531474630363!GO:0009124;nucleoside monophosphate biosynthetic process;0.015531474630363!GO:0009123;nucleoside monophosphate metabolic process;0.015531474630363!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0155623585954588!GO:0043596;nuclear replication fork;0.0156316906279552!GO:0035267;NuA4 histone acetyltransferase complex;0.0156585246365078!GO:0007050;cell cycle arrest;0.015684609589856!GO:0000776;kinetochore;0.0159060266479242!GO:0006352;transcription initiation;0.0160722932448802!GO:0030176;integral to endoplasmic reticulum membrane;0.0162919601580483!GO:0051537;2 iron, 2 sulfur cluster binding;0.0163009707586417!GO:0006284;base-excision repair;0.0163009707586417!GO:0022408;negative regulation of cell-cell adhesion;0.016556518649986!GO:0005637;nuclear inner membrane;0.0166593832670195!GO:0007021;tubulin folding;0.0167199095766512!GO:0005869;dynactin complex;0.0169828653873681!GO:0016860;intramolecular oxidoreductase activity;0.0173197178805766!GO:0006733;oxidoreduction coenzyme metabolic process;0.0173327059145072!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0174180715464658!GO:0045047;protein targeting to ER;0.0174180715464658!GO:0043492;ATPase activity, coupled to movement of substances;0.0174561696137798!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0177732375081843!GO:0006378;mRNA polyadenylation;0.0179310291931221!GO:0005100;Rho GTPase activator activity;0.0179398462668113!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0181586864565801!GO:0030521;androgen receptor signaling pathway;0.0181586864565801!GO:0016197;endosome transport;0.0183436911248851!GO:0008283;cell proliferation;0.018962548192788!GO:0030131;clathrin adaptor complex;0.0192877209991378!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0193034098520987!GO:0005774;vacuolar membrane;0.0195531191592688!GO:0006417;regulation of translation;0.0196554109620578!GO:0007264;small GTPase mediated signal transduction;0.0199798635033142!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.020051213266144!GO:0008538;proteasome activator activity;0.0203168176792937!GO:0007052;mitotic spindle organization and biogenesis;0.020462858951292!GO:0005758;mitochondrial intermembrane space;0.0207188941884148!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0207821044301929!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0207821044301929!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0209993203627412!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0211089709962002!GO:0048468;cell development;0.0211532519103048!GO:0007093;mitotic cell cycle checkpoint;0.0211877610388538!GO:0016272;prefoldin complex;0.0212538757749514!GO:0030660;Golgi-associated vesicle membrane;0.021731824017174!GO:0006220;pyrimidine nucleotide metabolic process;0.0218086333060311!GO:0040008;regulation of growth;0.02201276847594!GO:0006509;membrane protein ectodomain proteolysis;0.0220994664786303!GO:0033619;membrane protein proteolysis;0.0220994664786303!GO:0008243;plasminogen activator activity;0.0224932863797551!GO:0008629;induction of apoptosis by intracellular signals;0.0225601951843077!GO:0006376;mRNA splice site selection;0.0226065853833287!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0226065853833287!GO:0009967;positive regulation of signal transduction;0.0226065853833287!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0226537046214606!GO:0048660;regulation of smooth muscle cell proliferation;0.0227207146738136!GO:0006354;RNA elongation;0.023048429056862!GO:0042770;DNA damage response, signal transduction;0.0234707157170683!GO:0001836;release of cytochrome c from mitochondria;0.0240440395862199!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0240660317408324!GO:0035035;histone acetyltransferase binding;0.024171260791564!GO:0031529;ruffle organization and biogenesis;0.0244303305033559!GO:0007034;vacuolar transport;0.0245633337216854!GO:0004532;exoribonuclease activity;0.0245633337216854!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0245633337216854!GO:0006897;endocytosis;0.0247458278255891!GO:0010324;membrane invagination;0.0247458278255891!GO:0032984;macromolecular complex disassembly;0.0251230713333814!GO:0030508;thiol-disulfide exchange intermediate activity;0.0251606842655594!GO:0006783;heme biosynthetic process;0.0257792061107473!GO:0006739;NADP metabolic process;0.0257792061107473!GO:0051052;regulation of DNA metabolic process;0.0262755542550832!GO:0009161;ribonucleoside monophosphate metabolic process;0.0265682021235216!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0265682021235216!GO:0045893;positive regulation of transcription, DNA-dependent;0.0266388453665855!GO:0003756;protein disulfide isomerase activity;0.0266422143621712!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0266422143621712!GO:0005092;GDP-dissociation inhibitor activity;0.0276983998764582!GO:0030031;cell projection biogenesis;0.0277830742778518!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0279625504324912!GO:0030125;clathrin vesicle coat;0.0279913999394687!GO:0030665;clathrin coated vesicle membrane;0.0279913999394687!GO:0030041;actin filament polymerization;0.028018584381977!GO:0008415;acyltransferase activity;0.029453614797806!GO:0001953;negative regulation of cell-matrix adhesion;0.0296587136099822!GO:0043065;positive regulation of apoptosis;0.0298536544059831!GO:0030032;lamellipodium biogenesis;0.0302081704876314!GO:0000123;histone acetyltransferase complex;0.0302919615920466!GO:0007569;cell aging;0.0304913754965564!GO:0045792;negative regulation of cell size;0.0306664837628942!GO:0004003;ATP-dependent DNA helicase activity;0.0308938119615455!GO:0033559;unsaturated fatty acid metabolic process;0.0316795464473461!GO:0006636;unsaturated fatty acid biosynthetic process;0.0316795464473461!GO:0031123;RNA 3'-end processing;0.0321444420016255!GO:0051098;regulation of binding;0.0325464021039442!GO:0006541;glutamine metabolic process;0.0326340528337511!GO:0045045;secretory pathway;0.0327666541302372!GO:0006650;glycerophospholipid metabolic process;0.0333004488338117!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0339441425561835!GO:0006275;regulation of DNA replication;0.034244631485459!GO:0018193;peptidyl-amino acid modification;0.0344432669897307!GO:0051128;regulation of cellular component organization and biogenesis;0.0349613199654667!GO:0005876;spindle microtubule;0.0349794361385433!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0351401677876818!GO:0046128;purine ribonucleoside metabolic process;0.0357212131507544!GO:0042278;purine nucleoside metabolic process;0.0357212131507544!GO:0006270;DNA replication initiation;0.0357446299541977!GO:0043241;protein complex disassembly;0.0357548812189334!GO:0043624;cellular protein complex disassembly;0.0361369832421394!GO:0016417;S-acyltransferase activity;0.0371716963794734!GO:0051716;cellular response to stimulus;0.0373421736923038!GO:0043068;positive regulation of programmed cell death;0.0373957586245099!GO:0030911;TPR domain binding;0.0374825752245838!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0374825752245838!GO:0051338;regulation of transferase activity;0.0384366581830943!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0384366581830943!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0386310225306892!GO:0030308;negative regulation of cell growth;0.0387243013006243!GO:0008022;protein C-terminus binding;0.0395447426636569!GO:0015035;protein disulfide oxidoreductase activity;0.0395447426636569!GO:0016584;nucleosome positioning;0.0395447426636569!GO:0044437;vacuolar part;0.0396456906470205!GO:0016746;transferase activity, transferring acyl groups;0.0396456906470205!GO:0030503;regulation of cell redox homeostasis;0.0397539317265065!GO:0031970;organelle envelope lumen;0.0397539317265065!GO:0007162;negative regulation of cell adhesion;0.0402024464522721!GO:0030984;kininogen binding;0.0402655917099544!GO:0004213;cathepsin B activity;0.0402655917099544!GO:0006607;NLS-bearing substrate import into nucleus;0.0403001494885543!GO:0006596;polyamine biosynthetic process;0.0403001494885543!GO:0016125;sterol metabolic process;0.0403423326862613!GO:0000922;spindle pole;0.0404507562248643!GO:0022411;cellular component disassembly;0.0405322090287523!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0405322090287523!GO:0005784;translocon complex;0.0409725430457565!GO:0048144;fibroblast proliferation;0.0415200412752328!GO:0048145;regulation of fibroblast proliferation;0.0415200412752328!GO:0044433;cytoplasmic vesicle part;0.0416617632984513!GO:0007033;vacuole organization and biogenesis;0.0416617632984513!GO:0007040;lysosome organization and biogenesis;0.0426746938405031!GO:0051270;regulation of cell motility;0.0429187511072535!GO:0005765;lysosomal membrane;0.043251570766263!GO:0008147;structural constituent of bone;0.0435000214634116!GO:0006310;DNA recombination;0.043673462548012!GO:0000209;protein polyubiquitination;0.0447399802537175!GO:0009889;regulation of biosynthetic process;0.0450644367382372!GO:0050681;androgen receptor binding;0.0453029337087294!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0454694820113253!GO:0010257;NADH dehydrogenase complex assembly;0.0454694820113253!GO:0033108;mitochondrial respiratory chain complex assembly;0.0454694820113253!GO:0031625;ubiquitin protein ligase binding;0.0456108692151393!GO:0043154;negative regulation of caspase activity;0.0458384412003409!GO:0051101;regulation of DNA binding;0.0462647962458043!GO:0031272;regulation of pseudopodium formation;0.046303335554973!GO:0031269;pseudopodium formation;0.046303335554973!GO:0031344;regulation of cell projection organization and biogenesis;0.046303335554973!GO:0031268;pseudopodium organization and biogenesis;0.046303335554973!GO:0031346;positive regulation of cell projection organization and biogenesis;0.046303335554973!GO:0031274;positive regulation of pseudopodium formation;0.046303335554973!GO:0006497;protein amino acid lipidation;0.046303335554973!GO:0051059;NF-kappaB binding;0.0467684275209392!GO:0001952;regulation of cell-matrix adhesion;0.0470887473572418!GO:0030833;regulation of actin filament polymerization;0.0472866102513995!GO:0031371;ubiquitin conjugating enzyme complex;0.0474290943390539!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0474290943390539!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0474290943390539!GO:0009126;purine nucleoside monophosphate metabolic process;0.0474290943390539!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0474290943390539!GO:0045334;clathrin-coated endocytic vesicle;0.0476750177947667!GO:0031326;regulation of cellular biosynthetic process;0.0479990145743734!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0480918558152937!GO:0045039;protein import into mitochondrial inner membrane;0.0480918558152937!GO:0030145;manganese ion binding;0.0481253901492806!GO:0043130;ubiquitin binding;0.0487049759920431!GO:0032182;small conjugating protein binding;0.0487049759920431!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.048909235797336!GO:0006769;nicotinamide metabolic process;0.0494788331514308!GO:0046112;nucleobase biosynthetic process;0.0499034342945785
|sample_id=11346
|sample_id=11346
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=skin
|sample_tissue=skin
|top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615
|top_motifs=NANOG:1.11331544041;HES1:1.07877615485;ZNF238:0.974700952025;bHLH_family:0.926264031919;PDX1:0.926112063181;TLX1..3_NFIC{dimer}:0.817844922778;PBX1:0.815413519184;HAND1,2:0.79555003523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.79074023742;AR:0.781339363526;LEF1_TCF7_TCF7L1,2:0.778307436561;NR3C1:0.702985606034;TBP:0.700077033471;GFI1:0.686062819052;TP53:0.631367598969;GZF1:0.629352473018;GFI1B:0.616946861067;STAT5{A,B}:0.598541376896;LHX3,4:0.585848589464;POU3F1..4:0.581622029172;HOX{A5,B5}:0.557602900611;ESRRA:0.545140827355;TFAP4:0.513699101892;FOS_FOS{B,L1}_JUN{B,D}:0.495808565346;NFATC1..3:0.491669475225;PAX8:0.485309042811;RXR{A,B,G}:0.475102705626;TBX4,5:0.463314196362;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.450614482319;TFDP1:0.447642750552;ADNP_IRX_SIX_ZHX:0.445217108309;ZNF148:0.430699349364;GTF2A1,2:0.420249023156;TEAD1:0.396012157667;EN1,2:0.388385085481;PRRX1,2:0.355248361274;BACH2:0.329579680144;POU1F1:0.316510244114;NFE2L1:0.311529478595;NR5A1,2:0.309664841689;NKX2-1,4:0.30360016226;E2F1..5:0.297182374164;YY1:0.296925816687;SOX5:0.294700070339;TFCP2:0.273445525052;SOX17:0.266803337535;GLI1..3:0.247961130605;SOX{8,9,10}:0.237085820445;ZNF423:0.228685643001;NFE2:0.225887692511;FOSL2:0.225388440554;MTF1:0.223921816308;ELF1,2,4:0.223761158471;GATA6:0.220147153206;NKX2-2,8:0.213769200477;NFY{A,B,C}:0.208938823087;CRX:0.180209575399;CEBPA,B_DDIT3:0.168789869034;RORA:0.16721679912;NFE2L2:0.165230864621;PAX1,9:0.160691650146;NFIX:0.152574917024;SRF:0.151922310214;T:0.130770448021;HOX{A6,A7,B6,B7}:0.116978330744;MYB:0.0891058020198;IKZF1:0.0890637681216;GCM1,2:0.0849593766998;CDC5L:0.0821827537051;HNF1A:0.0399809123957;FOXD3:0.0396951064886;ALX4:0.0390807627697;TAL1_TCF{3,4,12}:0.0377470636;ZBTB6:0.0256302067744;POU2F1..3:0.023171011377;XCPE1{core}:0.0171570163344;ELK1,4_GABP{A,B1}:0.013136678221;NKX3-2:0.00497297192022;HIC1:-0.00228745314555;EBF1:-0.0130691731698;GTF2I:-0.0131925201622;PAX3,7:-0.0135971031001;ZNF143:-0.0207106836862;HNF4A_NR2F1,2:-0.0284197733316;ETS1,2:-0.0322106729988;NRF1:-0.032720712023;MYBL2:-0.0331051316696;TFAP2{A,C}:-0.0530850116581;HSF1,2:-0.062199595494;SPIB:-0.0697490660867;ONECUT1,2:-0.0791967553992;SPZ1:-0.0937017335425;HLF:-0.114379187028;TGIF1:-0.126850312347;MEF2{A,B,C,D}:-0.130265234734;REST:-0.130971676951;NHLH1,2:-0.138402268802;AHR_ARNT_ARNT2:-0.157068392045;HOX{A4,D4}:-0.157355213942;HBP1_HMGB_SSRP1_UBTF:-0.174736061945;TOPORS:-0.184378758795;ESR1:-0.205518859905;PPARG:-0.207049875593;SP1:-0.207445694234;ZIC1..3:-0.2193401939;VSX1,2:-0.219410349314;CUX2:-0.254568161164;UFEwm:-0.276828058335;ATF6:-0.277799466571;CREB1:-0.283355985642;ARID5B:-0.284062026787;KLF4:-0.294858002811;SMAD1..7,9:-0.296110032326;NFKB1_REL_RELA:-0.299970005429;NR1H4:-0.302399038508;OCT4_SOX2{dimer}:-0.306742431782;RFX1:-0.308632136838;SPI1:-0.315585564936;NFIL3:-0.31959548331;ALX1:-0.32299550363;ATF2:-0.329317856906;PAX2:-0.334722565381;PITX1..3:-0.355100977508;LMO2:-0.357720727277;NKX2-3_NKX2-5:-0.364240886081;PAX5:-0.371928958248;ZFP161:-0.37843102531;MYOD1:-0.383249275621;RUNX1..3:-0.38712972707;POU6F1:-0.393656311304;PAX6:-0.394515357167;RREB1:-0.400079843408;FOXL1:-0.401796612147;MYFfamily:-0.401969948456;MZF1:-0.403085266977;TFAP2B:-0.403443334859;RBPJ:-0.410856135838;STAT2,4,6:-0.420284016737;GATA4:-0.428080128054;HIF1A:-0.452021905099;RXRA_VDR{dimer}:-0.459116213076;POU5F1:-0.459930982205;FOXA2:-0.461459130856;FOXM1:-0.465500920697;SNAI1..3:-0.468885962891;FOXQ1:-0.48003444825;FOXO1,3,4:-0.482366251785;BREu{core}:-0.497195627305;ZEB1:-0.531397852325;PRDM1:-0.538628992238;NKX3-1:-0.539018218628;EGR1..3:-0.562217039302;SOX2:-0.570086620598;RFX2..5_RFXANK_RFXAP:-0.574790668651;ATF5_CREB3:-0.578103396854;MTE{core}:-0.608412056682;MED-1{core}:-0.608624340717;JUN:-0.612996653181;MAFB:-0.615119965267;XBP1:-0.618494981467;PATZ1:-0.637246761357;MAZ:-0.657715755429;HOXA9_MEIS1:-0.664099437822;TEF:-0.672554339896;NR6A1:-0.686347319705;IRF7:-0.688083475227;DMAP1_NCOR{1,2}_SMARC:-0.688210459676;FOX{I1,J2}:-0.688855133319;FOX{F1,F2,J1}:-0.708871287594;IKZF2:-0.747399355635;ZNF384:-0.748176450507;FOX{D1,D2}:-0.7754691215;STAT1,3:-0.781903630217;NANOG{mouse}:-0.784062605588;IRF1,2:-0.802035212141;SREBF1,2:-0.850876231659;HMGA1,2:-0.861849913258;FOXP1:-0.966281449511;DBP:-0.978958297593;HMX1:-1.05588359337;TLX2:-1.08138183331;NKX6-1,2:-1.10033073942;EP300:-1.10034722919;ATF4:-1.11939908019;PAX4:-1.16628214989;FOXP3:-1.19267510496;BPTF:-1.24171085771;EVI1:-1.24486342996;ZBTB16:-1.31011044651;AIRE:-1.31702208983;FOXN1:-1.36470979826;CDX1,2,4:-1.39924324615
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11346-117G5;search_select_hide=table117:FF:11346-117G5
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Fibroblast - Dermal, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11379
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage68 years old adult
sexfemale
age68
cell typefibroblast
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1616
catalog numberCA106-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005260
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11379 CAGE DRX008255 DRR009127
Accession ID Hg19

Library idBAMCTSS
CNhs11379 DRZ000552 DRZ001937
Accession ID Hg38

Library idBAMCTSS
CNhs11379 DRZ011902 DRZ013287
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005260
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.AGTCAA sRNA-Seq DRX037214 DRR041580
Accession ID Hg19

Library idBAMCTSS
SRhi10013.AGTCAA DRZ007222


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.21
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.161
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.516
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0238
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.321
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.247
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.196
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.116
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0392
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.196
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.505
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0292
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.354
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.433
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.254
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11379

Jaspar motifP-value
MA0002.20.323
MA0003.10.429
MA0004.10.195
MA0006.10.786
MA0007.10.00167
MA0009.10.749
MA0014.10.499
MA0017.10.345
MA0018.23.3869e-4
MA0019.10.796
MA0024.10.189
MA0025.10.165
MA0027.10.538
MA0028.10.272
MA0029.10.525
MA0030.10.177
MA0031.10.515
MA0035.20.299
MA0038.10.107
MA0039.20.133
MA0040.10.69
MA0041.10.508
MA0042.10.914
MA0043.11.50085e-4
MA0046.10.981
MA0047.20.168
MA0048.10.245
MA0050.11.50734e-6
MA0051.10.0425
MA0052.10.153
MA0055.10.00202
MA0057.10.0551
MA0058.10.224
MA0059.10.00345
MA0060.10.0112
MA0061.10.567
MA0062.20.754
MA0065.20.315
MA0066.10.161
MA0067.10.0202
MA0068.10.33
MA0069.10.217
MA0070.10.247
MA0071.10.476
MA0072.10.428
MA0073.10.998
MA0074.10.657
MA0076.10.958
MA0077.10.674
MA0078.10.966
MA0079.20.536
MA0080.20.304
MA0081.10.376
MA0083.10.0801
MA0084.10.769
MA0087.10.624
MA0088.10.01
MA0090.10.0818
MA0091.10.229
MA0092.10.361
MA0093.10.264
MA0099.21.71152e-17
MA0100.10.902
MA0101.10.49
MA0102.20.0305
MA0103.10.18
MA0104.20.0903
MA0105.10.367
MA0106.10.00524
MA0107.10.172
MA0108.25.48841e-5
MA0111.10.533
MA0112.20.0135
MA0113.10.00297
MA0114.10.229
MA0115.10.712
MA0116.10.284
MA0117.10.292
MA0119.10.00951
MA0122.10.899
MA0124.10.164
MA0125.10.654
MA0131.10.887
MA0135.10.326
MA0136.10.234
MA0137.20.0723
MA0138.20.979
MA0139.10.488
MA0140.10.0838
MA0141.10.0264
MA0142.10.209
MA0143.10.151
MA0144.10.553
MA0145.10.183
MA0146.10.452
MA0147.10.0181
MA0148.10.51
MA0149.10.00746
MA0150.10.00756
MA0152.10.575
MA0153.10.773
MA0154.10.437
MA0155.10.264
MA0156.10.301
MA0157.10.98
MA0159.10.319
MA0160.10.205
MA0162.10.101
MA0163.10.0275
MA0164.10.713
MA0258.10.327
MA0259.10.0724



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11379

Novel motifP-value
10.122
100.453
1000.369
1010.646
1020.272
1030.966
1040.315
1050.224
1060.656
1070.298
1080.36
1090.00222
110.0457
1100.0165
1110.604
1120.882
1130.343
1140.133
1150.725
1160.55
1170.525
1180.885
1190.352
120.78
1200.103
1210.308
1220.483
1230.0973
1240.649
1250.574
1260.898
1270.177
1280.382
1290.86
130.104
1300.0711
1310.755
1320.903
1330.188
1340.425
1350.671
1360.308
1370.178
1380.762
1390.943
140.402
1400.508
1410.715
1420.89
1430.0418
1440.517
1450.0277
1460.0337
1470.0835
1480.507
1490.179
150.322
1500.279
1510.658
1520.158
1530.479
1540.559
1550.126
1560.369
1570.43
1580.204
1590.488
160.799
1600.00282
1610.777
1620.961
1630.985
1640.827
1650.646
1660.736
1670.431
1680.472
1690.0518
170.191
180.0744
190.114
20.78
200.905
210.444
220.21
230.479
240.134
250.66
260.0888
270.288
280.133
290.682
30.485
300.611
310.882
320.817
330.0186
340.375
350.813
360.143
370.193
380.42
390.554
40.636
400.0469
410.586
420.355
430.232
440.407
450.688
460.0965
470.217
480.0493
490.273
50.758
500.329
510.647
520.646
530.784
540.721
550.836
560.503
570.0382
580.958
590.604
60.664
600.872
610.781
620.613
630.112
640.315
650.29
660.0156
670.735
680.0919
690.182
70.541
700.402
710.0177
720.97
730.0134
740.722
750.28
760.928
770.122
780.991
790.356
80.00344
800.579
810.611
820.74
830.551
840.0856
850.584
860.629
870.0439
880.197
890.0963
90.14
900.0715
910.731
920.799
930.328
940.525
950.0265
960.219
970.302
980.0329
999.36232e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11379


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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