FF:11355-117H5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005834 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005834 | ||
|accession_numbers=CAGE;DRX008405;DRR009277;DRZ000702;DRZ002087;DRZ012052;DRZ013437 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037087;DRR041453;DRZ007095 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000136 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.20!156.45!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.04!282.94!OSR1;;chr19:46801639..46801699,+!p1@HIF3A!1.93!83.22!HIF3A;;chr10:8096631..8096660,+!p1@GATA3!1.91!96.53!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.84!79.89!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.81!63.25!ZBED2;;chr16:31076332..31076388,-!p3@ZNF668!1.61!39.94!ZNF668;;chr19:46800289..46800327,+!p2@HIF3A!1.61!39.94!HIF3A;;chr8:102504651..102504683,+!p1@GRHL2!1.59!38.28!GRHL2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!38.28!ZBED1;;chr8:49833948..49833973,-!p2@SNAI2!1.55!209.71!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!166.44!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.51!31.62!IRX2;;chr4:174450089..174450153,-!p2@HAND2!1.51!31.62!HAND2;;chr14:75988771..75988826,+!p1@BATF!1.48!38.28!BATF;;chr5:153857800..153857812,-!p2@HAND1!1.47!28.29!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.47!28.29!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.43!31.62!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.41!24.97!IRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.94!TFAP2A;;chr1:209979467..209979494,-!p1@IRF6!1.39!26.63!IRF6;;chr8:49833978..49833996,-!p1@SNAI2!1.36!429.40!SNAI2;;chr5:3595934..3595957,+!p2@IRX1!1.35!21.64!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.35!21.64!HAND2;;chr11:46299539..46299620,+!p2@CREB3L1!1.32!33.29!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.29!18.31!IRX1;;chr8:102504979..102505010,+!p2@GRHL2!1.29!18.31!GRHL2;;chr4:188916918..188916942,+!p1@ZFP42!1.25!16.64!ZFP42;;chr5:153857819..153857824,-!p3@HAND1!1.20!14.98!HAND1;;chr8:102504690..102504704,+!p3@GRHL2!1.20!14.98!GRHL2;;chr17:46132044..46132080,+!p4@NFE2L1!1.20!14.98!NFE2L1;;chr17:7493405..7493419,-!p1@SOX15!1.20!14.98!SOX15;;chr5:2751785..2751808,-!p2@IRX2!1.16!13.31!IRX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.64!ZBTB16;;chr8:55370487..55370503,+!p1@SOX17!1.10!11.65!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!1.04!18.31!NR2F2;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.65!GATA3;;chr2:45236540..45236577,-!p1@SIX2!1.04!9.99!SIX2;;chr17:46671108..46671147,-!p1@HOXB5!1.04!9.99!HOXB5;;chr11:47236584..47236679,+!p1@DDB2!0.98!94.87!DDB2;;chr16:86600426..86600441,+!p1@FOXC2!0.98!21.64!FOXC2;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.65!CENPT;;chr2:231084820..231084836,-!p5@SP110!0.98!9.99!SP110;;chr6:1389789..1389821,+!p1@FOXF2!0.97!11.65!FOXF2;;chr3:111314230..111314241,-!p2@ZBED2!0.97!8.32!ZBED2;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.32!GATA3;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.32!CREB3L1;;chr19:46806868..46806883,+!p3@HIF3A!0.97!8.32!HIF3A;;chr16:67881647..67881663,-!p3@CENPT!0.97!8.32!CENPT;;chr16:86612320..86612394,+!p1@FOXL1!0.97!8.32!FOXL1;;chr20:39317868..39317884,-!p1@MAFB!0.96!99.86!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!0.96!23.30!EPAS1;;chr1:59249732..59249749,-!p2@JUN!0.94!96.53!JUN;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.32!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.91!119.83!KLF4;;chr6:10412576..10412599,-!p5@TFAP2A!0.88!6.66!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!0.88!6.66!TFAP2A;;chr7:27142290..27142310,-!p1@HOXA2!0.88!6.66!HOXA2;;chr20:18038521..18038571,-!p1@OVOL2!0.88!6.66!OVOL2;;chr4:57522598..57522664,-!p3@HOPX!0.88!6.66!HOPX;;chr12:54447637..54447659,+!p4@HOXC4!0.88!6.66!HOXC4;;chr17:46675558..46675577,-!p2@HOXB6!0.88!6.66!HOXB6;;chr19:7584815..7584829,+!p2@ZNF358!0.85!8.32!ZNF358;;chr1:38512457..38512474,-!p1@POU3F1!0.85!6.66!POU3F1;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.63!ZNF521;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!9.99!ZBTB16;;chr15:96869511..96869525,+!p16@NR2F2!0.84!6.66!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.83!83.22!ZNF503;;chr19:45261550..45261641,+!p6@BCL3!0.83!9.99!BCL3;;chr10:77161650..77161661,-!p4@ZNF503!0.83!8.32!ZNF503;;chr15:96869222..96869251,+!p18@NR2F2!0.82!6.66!NR2F2;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.53!MYBL2;;chr12:66218836..66218888,+!p1@HMGA2!0.81!54.92!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.81!26.63!FOXD1;;chr19:7580944..7581031,+!p1@ZNF358!0.80!174.76!ZNF358;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.32!ETV4;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.66!HOXC4;;chr6:85473156..85473210,-!p2@TBX18!0.80!6.66!TBX18;;chr17:7492684..7492778,-!p2@SOX15!0.79!11.65!SOX15;;chr20:55204351..55204377,+!p1@TFAP2C!0.79!6.66!TFAP2C;;chr19:926055..926068,+!p2@ARID3A!0.78!11.65!ARID3A;;chr19:47523058..47523114,+!p1@NPAS1!0.78!4.99!NPAS1;;chr1:209979411..209979433,-!p2@IRF6!0.78!4.99!IRF6;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.78!4.99!ZNF469;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!4.99!TFAP2A;;chr2:16080659..16080685,+!p1@MYCN!0.78!4.99!MYCN;;chr2:19553530..19553547,-!p3@OSR1!0.78!4.99!OSR1;;chr2:19558327..19558334,-!p2@OSR1!0.78!4.99!OSR1;;chr2:45236579..45236596,-!p2@SIX2!0.78!4.99!SIX2;;chr4:299227..299272,-!p1@ZNF732!0.78!4.99!ZNF732;;chr11:113930401..113930422,+!p3@ZBTB16!0.78!4.99!ZBTB16;;chr12:54447219..54447237,+!p6@HOXC4!0.78!4.99!HOXC4;;chr19:17356189..17356221,-!p2@NR2F6!0.77!8.32!NR2F6;;chr6:32095523..32095564,-!p2@ATF6B!0.76!6.66!ATF6B;;chr20:42295713..42295738,+!p2@MYBL2!0.75!29.96!MYBL2;;chr10:77161533..77161546,-!p2@ZNF503!0.75!19.97!ZNF503;;chr3:52001448..52001478,-!p2@PCBP4!0.74!69.90!PCBP4;;chr15:96873861..96873872,+!p9@NR2F2!0.74!9.99!NR2F2;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.32!EPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.27!PPP1R13L;;chr3:52001426..52001447,-!p3@PCBP4!0.73!13.31!PCBP4;;chr15:96869292..96869320,+!p15@NR2F2!0.73!6.66!NR2F2;;chr3:24536253..24536328,-!p1@THRB!0.71!8.32!THRB;;chr11:85376097..85376108,-!p2@CREBZF!0.71!8.32!CREBZF;;chr8:145159277..145159282,+!p7@MAF1!0.71!6.66!MAF1;;chr20:306051..306096,+!p3@SOX12!0.70!11.65!SOX12;;chr20:2673383..2673441,+!p1@EBF4!0.70!6.66!EBF4;;chr6:151712764..151712785,-!p4@ZBTB2!0.70!6.66!ZBTB2;;chr6:33285505..33285529,-!p1@ZBTB22!0.69!29.96!ZBTB22;;chr17:38465413..38465438,+!p5@RARA!0.69!6.66!RARA;;chr16:29818160..29818188,+!p6@MAZ!0.68!19.97!MAZ;;chr5:174151553..174151610,+!p1@MSX2!0.68!6.66!MSX2;;chr19:47922750..47922795,-!p1@MEIS3!0.68!6.66!MEIS3;;chr1:149858461..149858479,+!p1@BOLA1!0.67!1667.68!BOLA1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.67!6.66!MEIS3P1;;chr6:21594391..21594431,+!p9@SOX4!0.67!4.99!SOX4;;chr16:3185125..3185173,+!p1@ZNF213!0.66!9.99!ZNF213;;chr9:110251836..110251887,-!p4@KLF4!0.66!4.99!KLF4;;chr4:81118647..81118666,+!p1@PRDM8!0.66!4.99!PRDM8;;chr17:3571863..3571881,-!p1@TAX1BP3!0.65!292.93!TAX1BP3;;chr1:59249707..59249727,-!p1@JUN!0.65!171.43!JUN;;chr6:34204921..34204939,+!p3@HMGA1!0.65!121.50!HMGA1;;chr5:176738887..176738934,-!p1@MXD3!0.65!26.63!MXD3;;chr19:36545128..36545203,-!p1@THAP8!0.65!18.31!THAP8;;chr10:77161133..77161176,-!p3@ZNF503!0.65!8.32!ZNF503;;chr4:2263809..2263854,-!p1@MXD4!0.64!153.12!MXD4;;chr19:59031131..59031193,-!p1@ZBTB45!0.64!51.59!ZBTB45;;chr12:53625966..53626012,-!p2@RARG!0.64!9.99!RARG;;chr5:178368186..178368238,+!p1@ZNF454!0.64!6.66!ZNF454;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.33!TFAP2A;;chr6:29648890..29648944,-!p1@ZFP57!0.64!3.33!ZFP57;;chr6:391743..391759,+!p1@IRF4!0.64!3.33!IRF4;;chr7:101917447..101917479,+!p4@CUX1!0.64!3.33!CUX1;;chr7:1577899..1577943,+!p3@MAFK!0.64!3.33!MAFK;;chr10:8097295..8097320,+!p6@GATA3!0.64!3.33!GATA3;;chr11:125034586..125034604,+!p3@PKNOX2!0.64!3.33!PKNOX2;;chr11:46333883..46333900,+!p8@CREB3L1!0.64!3.33!CREB3L1;;chr12:3068634..3068656,+!p5@TEAD4!0.64!3.33!TEAD4;;chr14:37131058..37131139,+!p1@PAX9!0.64!3.33!PAX9;;chr19:7584204..7584218,+!p9@ZNF358!0.64!3.33!ZNF358;;chr1:201979743..201979762,+!p1@ELF3!0.64!3.33!ELF3;;chr20:18038486..18038520,-!p2@OVOL2!0.64!3.33!OVOL2;;chr16:67881534..67881549,-!p4@CENPT!0.64!3.33!CENPT;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.33!FOXC2;;chr22:24093154..24093183,-!p2@ZNF70!0.64!3.33!ZNF70;;chr2:66666432..66666462,+!p7@MEIS1!0.64!3.33!MEIS1;;chr3:138665937..138665968,-!p1@FOXL2!0.64!3.33!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.64!3.33!FOXL2;;chr3:24536332..24536358,-!p2@THRB!0.64!3.33!THRB;;chr3:71631217..71631234,-!p33@FOXP1!0.64!3.33!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!0.64!3.33!NR3C2;;chr4:149365827..149365870,-!p5@NR3C2!0.64!3.33!NR3C2;;chrX:56258900..56258917,+!p4@KLF8!0.64!3.33!KLF8;;chr9:132427883..132427951,+!p2@PRRX2!0.64!3.33!PRRX2;;chr16:67867749..67867852,-!p1@CENPT!0.63!88.21!CENPT;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.97!HIF1A;;chr12:66218255..66218304,+!p3@HMGA2!0.63!9.99!HMGA2;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.32!PPARG;;chr2:46524506..46524514,+!p5@EPAS1!0.63!6.66!EPAS1;;chr2:174830540..174830563,-!p8@SP3!0.63!4.99!SP3;;chr13:73633131..73633149,+!p1@KLF5!0.62!39.94!KLF5;;chr9:117150254..117150271,-!p1@AKNA!0.62!9.99!AKNA;;chr12:66218212..66218244,+!p5@HMGA2!0.62!4.99!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.62!4.99!PAWR;;chr12:66218598..66218645,+!p2@HMGA2!0.61!16.64!HMGA2;;chr7:6655225..6655279,+!p1@ENST00000457543!0.61!4.99!ZNF853;;chrX:106960285..106960299,-!p1@TSC22D3!0.60!96.53!TSC22D3;;chr16:29817841..29817865,+!p1@MAZ!0.60!78.22!MAZ;;chr1:249132410..249132456,+!p1@ZNF672!0.60!26.63!ZNF672;;chr2:28616358..28616380,+!p3@FOSL2!0.60!18.31!FOSL2;;chr20:45142154..45142227,-!p1@ZNF334!0.60!6.66!ZNF334;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.99!ETV4;;chr12:3068196..3068232,+!p9@TEAD4!0.60!3.33!TEAD4;;chr16:29817789..29817838,+!p2@MAZ!0.59!48.27!MAZ;;chr11:46722560..46722595,+!p1@ZNF408!0.59!18.31!ZNF408;;chr1:8939265..8939367,-!p5@ENO1!0.59!6.66!ENO1;;chr19:56671612..56671626,+!p4@ZNF444!0.59!4.99!ZNF444;;chr6:144329531..144329546,-!p5@PLAGL1!0.59!4.99!PLAGL1;;chr22:21356378..21356422,-!p2@THAP7!0.58!29.96!THAP7;;chr10:51572408..51572454,+!p3@NCOA4!0.58!19.97!NCOA4;;chr19:926001..926046,+!p1@ARID3A!0.58!11.65!ARID3A;;chr1:249132484..249132505,+!p4@ZNF672!0.58!9.99!ZNF672;;chr16:31085058..31085078,-!p2@ZNF668!0.58!6.66!ZNF668;;chr16:3185051..3185068,+!p3@ZNF213!0.58!4.99!ZNF213;;chr19:44124019..44124030,-!p2@ZNF428!0.58!3.33!ZNF428;;chr3:12330560..12330579,+!p1@PPARG!0.58!3.33!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.58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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.20!156.45!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.04!282.94!OSR1;;chr19:46801639..46801699,+!p1@HIF3A!1.93!83.22!HIF3A;;chr10:8096631..8096660,+!p1@GATA3!1.91!96.53!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.84!79.89!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.81!63.25!ZBED2;;chr16:31076332..31076388,-!p3@ZNF668!1.61!39.94!ZNF668;;chr19:46800289..46800327,+!p2@HIF3A!1.61!39.94!HIF3A;;chr8:102504651..102504683,+!p1@GRHL2!1.59!38.28!GRHL2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!38.28!ZBED1;;chr8:49833948..49833973,-!p2@SNAI2!1.55!209.71!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!166.44!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.51!31.62!IRX2;;chr4:174450089..174450153,-!p2@HAND2!1.51!31.62!HAND2;;chr14:75988771..75988826,+!p1@BATF!1.48!38.28!BATF;;chr5:153857800..153857812,-!p2@HAND1!1.47!28.29!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.47!28.29!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.43!31.62!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.41!24.97!IRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.94!TFAP2A;;chr1:209979467..209979494,-!p1@IRF6!1.39!26.63!IRF6;;chr8:49833978..49833996,-!p1@SNAI2!1.36!429.40!SNAI2;;chr5:3595934..3595957,+!p2@IRX1!1.35!21.64!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.35!21.64!HAND2;;chr11:46299539..46299620,+!p2@CREB3L1!1.32!33.29!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.29!18.31!IRX1;;chr8:102504979..102505010,+!p2@GRHL2!1.29!18.31!GRHL2;;chr4:188916918..188916942,+!p1@ZFP42!1.25!16.64!ZFP42;;chr5:153857819..153857824,-!p3@HAND1!1.20!14.98!HAND1;;chr8:102504690..102504704,+!p3@GRHL2!1.20!14.98!GRHL2;;chr17:46132044..46132080,+!p4@NFE2L1!1.20!14.98!NFE2L1;;chr17:7493405..7493419,-!p1@SOX15!1.20!14.98!SOX15;;chr5:2751785..2751808,-!p2@IRX2!1.16!13.31!IRX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.64!ZBTB16;;chr8:55370487..55370503,+!p1@SOX17!1.10!11.65!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!1.04!18.31!NR2F2;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.65!GATA3;;chr2:45236540..45236577,-!p1@SIX2!1.04!9.99!SIX2;;chr17:46671108..46671147,-!p1@HOXB5!1.04!9.99!HOXB5;;chr11:47236584..47236679,+!p1@DDB2!0.98!94.87!DDB2;;chr16:86600426..86600441,+!p1@FOXC2!0.98!21.64!FOXC2;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.65!CENPT;;chr2:231084820..231084836,-!p5@SP110!0.98!9.99!SP110;;chr6:1389789..1389821,+!p1@FOXF2!0.97!11.65!FOXF2;;chr3:111314230..111314241,-!p2@ZBED2!0.97!8.32!ZBED2;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.32!GATA3;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.32!CREB3L1;;chr19:46806868..46806883,+!p3@HIF3A!0.97!8.32!HIF3A;;chr16:67881647..67881663,-!p3@CENPT!0.97!8.32!CENPT;;chr16:86612320..86612394,+!p1@FOXL1!0.97!8.32!FOXL1;;chr20:39317868..39317884,-!p1@MAFB!0.96!99.86!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!0.96!23.30!EPAS1;;chr1:59249732..59249749,-!p2@JUN!0.94!96.53!JUN;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.32!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.91!119.83!KLF4;;chr6:10412576..10412599,-!p5@TFAP2A!0.88!6.66!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!0.88!6.66!TFAP2A;;chr7:27142290..27142310,-!p1@HOXA2!0.88!6.66!HOXA2;;chr20:18038521..18038571,-!p1@OVOL2!0.88!6.66!OVOL2;;chr4:57522598..57522664,-!p3@HOPX!0.88!6.66!HOPX;;chr12:54447637..54447659,+!p4@HOXC4!0.88!6.66!HOXC4;;chr17:46675558..46675577,-!p2@HOXB6!0.88!6.66!HOXB6;;chr19:7584815..7584829,+!p2@ZNF358!0.85!8.32!ZNF358;;chr1:38512457..38512474,-!p1@POU3F1!0.85!6.66!POU3F1;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.63!ZNF521;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!9.99!ZBTB16;;chr15:96869511..96869525,+!p16@NR2F2!0.84!6.66!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.83!83.22!ZNF503;;chr19:45261550..45261641,+!p6@BCL3!0.83!9.99!BCL3;;chr10:77161650..77161661,-!p4@ZNF503!0.83!8.32!ZNF503;;chr15:96869222..96869251,+!p18@NR2F2!0.82!6.66!NR2F2;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.53!MYBL2;;chr12:66218836..66218888,+!p1@HMGA2!0.81!54.92!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.81!26.63!FOXD1;;chr19:7580944..7581031,+!p1@ZNF358!0.80!174.76!ZNF358;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.32!ETV4;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.66!HOXC4;;chr6:85473156..85473210,-!p2@TBX18!0.80!6.66!TBX18;;chr17:7492684..7492778,-!p2@SOX15!0.79!11.65!SOX15;;chr20:55204351..55204377,+!p1@TFAP2C!0.79!6.66!TFAP2C;;chr19:926055..926068,+!p2@ARID3A!0.78!11.65!ARID3A;;chr19:47523058..47523114,+!p1@NPAS1!0.78!4.99!NPAS1;;chr1:209979411..209979433,-!p2@IRF6!0.78!4.99!IRF6;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.78!4.99!ZNF469;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!4.99!TFAP2A;;chr2:16080659..16080685,+!p1@MYCN!0.78!4.99!MYCN;;chr2:19553530..19553547,-!p3@OSR1!0.78!4.99!OSR1;;chr2:19558327..19558334,-!p2@OSR1!0.78!4.99!OSR1;;chr2:45236579..45236596,-!p2@SIX2!0.78!4.99!SIX2;;chr4:299227..299272,-!p1@ZNF732!0.78!4.99!ZNF732;;chr11:113930401..113930422,+!p3@ZBTB16!0.78!4.99!ZBTB16;;chr12:54447219..54447237,+!p6@HOXC4!0.78!4.99!HOXC4;;chr19:17356189..17356221,-!p2@NR2F6!0.77!8.32!NR2F6;;chr6:32095523..32095564,-!p2@ATF6B!0.76!6.66!ATF6B;;chr20:42295713..42295738,+!p2@MYBL2!0.75!29.96!MYBL2;;chr10:77161533..77161546,-!p2@ZNF503!0.75!19.97!ZNF503;;chr3:52001448..52001478,-!p2@PCBP4!0.74!69.90!PCBP4;;chr15:96873861..96873872,+!p9@NR2F2!0.74!9.99!NR2F2;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.32!EPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.27!PPP1R13L;;chr3:52001426..52001447,-!p3@PCBP4!0.73!13.31!PCBP4;;chr15:96869292..96869320,+!p15@NR2F2!0.73!6.66!NR2F2;;chr3:24536253..24536328,-!p1@THRB!0.71!8.32!THRB;;chr11:85376097..85376108,-!p2@CREBZF!0.71!8.32!CREBZF;;chr8:145159277..145159282,+!p7@MAF1!0.71!6.66!MAF1;;chr20:306051..306096,+!p3@SOX12!0.70!11.65!SOX12;;chr20:2673383..2673441,+!p1@EBF4!0.70!6.66!EBF4;;chr6:151712764..151712785,-!p4@ZBTB2!0.70!6.66!ZBTB2;;chr6:33285505..33285529,-!p1@ZBTB22!0.69!29.96!ZBTB22;;chr17:38465413..38465438,+!p5@RARA!0.69!6.66!RARA;;chr16:29818160..29818188,+!p6@MAZ!0.68!19.97!MAZ;;chr5:174151553..174151610,+!p1@MSX2!0.68!6.66!MSX2;;chr19:47922750..47922795,-!p1@MEIS3!0.68!6.66!MEIS3;;chr1:149858461..149858479,+!p1@BOLA1!0.67!1667.68!BOLA1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.67!6.66!MEIS3P1;;chr6:21594391..21594431,+!p9@SOX4!0.67!4.99!SOX4;;chr16:3185125..3185173,+!p1@ZNF213!0.66!9.99!ZNF213;;chr9:110251836..110251887,-!p4@KLF4!0.66!4.99!KLF4;;chr4:81118647..81118666,+!p1@PRDM8!0.66!4.99!PRDM8;;chr17:3571863..3571881,-!p1@TAX1BP3!0.65!292.93!TAX1BP3;;chr1:59249707..59249727,-!p1@JUN!0.65!171.43!JUN;;chr6:34204921..34204939,+!p3@HMGA1!0.65!121.50!HMGA1;;chr5:176738887..176738934,-!p1@MXD3!0.65!26.63!MXD3;;chr19:36545128..36545203,-!p1@THAP8!0.65!18.31!THAP8;;chr10:77161133..77161176,-!p3@ZNF503!0.65!8.32!ZNF503;;chr4:2263809..2263854,-!p1@MXD4!0.64!153.12!MXD4;;chr19:59031131..59031193,-!p1@ZBTB45!0.64!51.59!ZBTB45;;chr12:53625966..53626012,-!p2@RARG!0.64!9.99!RARG;;chr5:178368186..178368238,+!p1@ZNF454!0.64!6.66!ZNF454;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.33!TFAP2A;;chr6:29648890..29648944,-!p1@ZFP57!0.64!3.33!ZFP57;;chr6:391743..391759,+!p1@IRF4!0.64!3.33!IRF4;;chr7:101917447..101917479,+!p4@CUX1!0.64!3.33!CUX1;;chr7:1577899..1577943,+!p3@MAFK!0.64!3.33!MAFK;;chr10:8097295..8097320,+!p6@GATA3!0.64!3.33!GATA3;;chr11:125034586..125034604,+!p3@PKNOX2!0.64!3.33!PKNOX2;;chr11:46333883..46333900,+!p8@CREB3L1!0.64!3.33!CREB3L1;;chr12:3068634..3068656,+!p5@TEAD4!0.64!3.33!TEAD4;;chr14:37131058..37131139,+!p1@PAX9!0.64!3.33!PAX9;;chr19:7584204..7584218,+!p9@ZNF358!0.64!3.33!ZNF358;;chr1:201979743..201979762,+!p1@ELF3!0.64!3.33!ELF3;;chr20:18038486..18038520,-!p2@OVOL2!0.64!3.33!OVOL2;;chr16:67881534..67881549,-!p4@CENPT!0.64!3.33!CENPT;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.33!FOXC2;;chr22:24093154..24093183,-!p2@ZNF70!0.64!3.33!ZNF70;;chr2:66666432..66666462,+!p7@MEIS1!0.64!3.33!MEIS1;;chr3:138665937..138665968,-!p1@FOXL2!0.64!3.33!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.64!3.33!FOXL2;;chr3:24536332..24536358,-!p2@THRB!0.64!3.33!THRB;;chr3:71631217..71631234,-!p33@FOXP1!0.64!3.33!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!0.64!3.33!NR3C2;;chr4:149365827..149365870,-!p5@NR3C2!0.64!3.33!NR3C2;;chrX:56258900..56258917,+!p4@KLF8!0.64!3.33!KLF8;;chr9:132427883..132427951,+!p2@PRRX2!0.64!3.33!PRRX2;;chr16:67867749..67867852,-!p1@CENPT!0.63!88.21!CENPT;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.97!HIF1A;;chr12:66218255..66218304,+!p3@HMGA2!0.63!9.99!HMGA2;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.32!PPARG;;chr2:46524506..46524514,+!p5@EPAS1!0.63!6.66!EPAS1;;chr2:174830540..174830563,-!p8@SP3!0.63!4.99!SP3;;chr13:73633131..73633149,+!p1@KLF5!0.62!39.94!KLF5;;chr9:117150254..117150271,-!p1@AKNA!0.62!9.99!AKNA;;chr12:66218212..66218244,+!p5@HMGA2!0.62!4.99!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.62!4.99!PAWR;;chr12:66218598..66218645,+!p2@HMGA2!0.61!16.64!HMGA2;;chr7:6655225..6655279,+!p1@ENST00000457543!0.61!4.99!ZNF853;;chrX:106960285..106960299,-!p1@TSC22D3!0.60!96.53!TSC22D3;;chr16:29817841..29817865,+!p1@MAZ!0.60!78.22!MAZ;;chr1:249132410..249132456,+!p1@ZNF672!0.60!26.63!ZNF672;;chr2:28616358..28616380,+!p3@FOSL2!0.60!18.31!FOSL2;;chr20:45142154..45142227,-!p1@ZNF334!0.60!6.66!ZNF334;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.99!ETV4;;chr12:3068196..3068232,+!p9@TEAD4!0.60!3.33!TEAD4;;chr16:29817789..29817838,+!p2@MAZ!0.59!48.27!MAZ;;chr11:46722560..46722595,+!p1@ZNF408!0.59!18.31!ZNF408;;chr1:8939265..8939367,-!p5@ENO1!0.59!6.66!ENO1;;chr19:56671612..56671626,+!p4@ZNF444!0.59!4.99!ZNF444;;chr6:144329531..144329546,-!p5@PLAGL1!0.59!4.99!PLAGL1;;chr22:21356378..21356422,-!p2@THAP7!0.58!29.96!THAP7;;chr10:51572408..51572454,+!p3@NCOA4!0.58!19.97!NCOA4;;chr19:926001..926046,+!p1@ARID3A!0.58!11.65!ARID3A;;chr1:249132484..249132505,+!p4@ZNF672!0.58!9.99!ZNF672;;chr16:31085058..31085078,-!p2@ZNF668!0.58!6.66!ZNF668;;chr16:3185051..3185068,+!p3@ZNF213!0.58!4.99!ZNF213;;chr19:44124019..44124030,-!p2@ZNF428!0.58!3.33!ZNF428;;chr3:12330560..12330579,+!p1@PPARG!0.58!3.33!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.58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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002577;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001987;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11355-117H5 | |id=FF:11355-117H5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000136 | ||
|is_obsolete= | |||
|library_id=CNhs11386 | |||
|library_id_phase_based=2:CNhs11386 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11355 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.CGTACG.11355 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11355 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.CGTACG.11355 | |||
|name=Placental Epithelial Cells, donor2 | |name=Placental Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11386,LSID771,release012,COMPLETED | |profile_hcage=CNhs11386,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.502815558313846,-0.0696075648920235,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.368245900894626,0,0,0,0.425591991369837,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.000334636294191171,0,0,0,-0.158631083977536,-0.211197402695869,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.489213359250936,1.17097659781846,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA230-R10f | |rna_catalog_number=CA230-R10f | ||
| Line 56: | Line 81: | ||
|rna_tube_id=117H5 | |rna_tube_id=117H5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.CGTACG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 104: | ||
|sample_tissue=placenta | |sample_tissue=placenta | ||
|top_motifs=PPARG:2.19231858905;ZNF423:2.08624415923;HOX{A5,B5}:1.91220491355;TP53:1.8460401299;GLI1..3:1.6608590143;ZNF148:1.54841478896;NKX2-1,4:1.47104256114;TBX4,5:1.41906028904;ESR1:1.4001511294;TFAP4:1.35478213264;ZIC1..3:1.33521409985;TFAP2{A,C}:1.31286450483;GCM1,2:1.30814969512;PAX5:1.29203646827;TEAD1:1.25856321455;MTF1:1.1532216989;SNAI1..3:1.09763567676;NKX2-3_NKX2-5:1.06227467739;TBP:1.02341077143;HAND1,2:1.02226924237;EP300:0.92981315117;FOXM1:0.877218290959;ZNF384:0.819003743898;RXRA_VDR{dimer}:0.778079148165;AR:0.737100805775;XCPE1{core}:0.720464098415;HMX1:0.700062371001;SP1:0.697674297327;ZNF238:0.694707977744;POU3F1..4:0.66776888609;CDC5L:0.652377901199;ZEB1:0.643335168379;TFCP2:0.615581958772;RORA:0.590655007952;NR6A1:0.584928579259;SOX17:0.550585515448;EBF1:0.527681161464;HSF1,2:0.520952780595;STAT5{A,B}:0.508599084651;NR3C1:0.497609695005;TAL1_TCF{3,4,12}:0.447395785875;GZF1:0.446264886456;UFEwm:0.424666521436;ONECUT1,2:0.39252104889;HES1:0.372671119135;RXR{A,B,G}:0.368711148253;bHLH_family:0.338079213721;FOXL1:0.333794326125;FOS_FOS{B,L1}_JUN{B,D}:0.306530476911;HOXA9_MEIS1:0.300155674769;MAZ:0.299807643637;POU6F1:0.288190467925;LHX3,4:0.286423747167;POU2F1..3:0.280743070381;PBX1:0.273540752275;NR5A1,2:0.273075048292;HOX{A6,A7,B6,B7}:0.255517573512;TLX1..3_NFIC{dimer}:0.23776599106;SOX{8,9,10}:0.236951375698;RREB1:0.226858917452;FOXQ1:0.226387996719;KLF4:0.224818220033;MYOD1:0.223962018877;BACH2:0.214577195168;GTF2A1,2:0.201274550148;SMAD1..7,9:0.189089371643;IKZF1:0.187651788712;GFI1:0.162159607466;NKX2-2,8:0.144872424902;E2F1..5:0.142999205643;ALX4:0.105629555646;HIC1:0.0787373671663;HIF1A:0.0731676919902;NFIL3:0.0704837958508;HLF:0.0679600365203;FOSL2:0.0584905042271;EN1,2:0.0574136669345;NFY{A,B,C}:0.0529743055139;SPZ1:0.0477222398608;ZNF143:0.045532118663;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0342629866513;ZBTB6:0.0271884853067;YY1:-0.0275259463031;NFE2:-0.0370117328581;GTF2I:-0.0393641574213;LEF1_TCF7_TCF7L1,2:-0.0408405978338;MAFB:-0.0679534912985;DBP:-0.085684983764;ATF2:-0.10713577903;HNF1A:-0.116039368979;SOX5:-0.118352330161;HMGA1,2:-0.158192935044;GATA6:-0.161261924612;ADNP_IRX_SIX_ZHX:-0.174547075422;XBP1:-0.193849006973;HNF4A_NR2F1,2:-0.19452802129;CEBPA,B_DDIT3:-0.205036718791;FOX{F1,F2,J1}:-0.214702036028;NFE2L2:-0.226810625583;SRF:-0.23122042057;JUN:-0.233410203126;NHLH1,2:-0.237366794447;MYB:-0.258387519419;HOX{A4,D4}:-0.287422301474;TOPORS:-0.290544438216;ESRRA:-0.334336190116;OCT4_SOX2{dimer}:-0.354318172613;ARID5B:-0.361029364734;PAX8:-0.36886834395;NANOG:-0.372520859038;NFKB1_REL_RELA:-0.395941918365;RUNX1..3:-0.398448028805;PRRX1,2:-0.40132543765;ATF6:-0.402197402404;TEF:-0.411483116969;REST:-0.425733600529;NFE2L1:-0.426726358092;RFX1:-0.4318534621;PAX1,9:-0.434659952604;MYBL2:-0.451342468297;GFI1B:-0.464672986276;NKX3-2:-0.467119783792;MED-1{core}:-0.507776730862;MEF2{A,B,C,D}:-0.534205287719;EVI1:-0.535145424346;AIRE:-0.549430426595;ELK1,4_GABP{A,B1}:-0.561144061088;NR1H4:-0.583431766685;PATZ1:-0.586963311752;SREBF1,2:-0.62545947538;TFAP2B:-0.639695841409;POU1F1:-0.652701788952;FOXO1,3,4:-0.655553906199;LMO2:-0.674196085445;NANOG{mouse}:-0.676487383413;PITX1..3:-0.688829393875;ETS1,2:-0.707682153628;SOX2:-0.708388302746;SPIB:-0.713919282037;PAX2:-0.731864268404;CRX:-0.734700409212;ATF4:-0.772248678639;CUX2:-0.774915770662;NFATC1..3:-0.797957752851;MZF1:-0.826534901903;NRF1:-0.828714683541;MYFfamily:-0.838912388572;ELF1,2,4:-0.852436967285;STAT1,3:-0.855362805688;MTE{core}:-0.874144078037;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.880157690138;GATA4:-0.900401569175;VSX1,2:-0.935908531864;RBPJ:-0.93594845534;PRDM1:-0.938906483146;SPI1:-0.945029830444;PDX1:-0.947511016826;ALX1:-0.948694684301;TFDP1:-0.950260499367;FOX{D1,D2}:-0.954135649275;IRF7:-0.959326155741;STAT2,4,6:-0.99674544739;FOX{I1,J2}:-0.998105347184;PAX6:-1.02652244156;ATF5_CREB3:-1.03388502475;FOXN1:-1.10246092692;BPTF:-1.12052050968;FOXA2:-1.16545376034;IRF1,2:-1.17466582026;FOXP3:-1.19209928288;PAX3,7:-1.23016021077;TGIF1:-1.23094085233;PAX4:-1.23735967756;POU5F1:-1.23789821084;TLX2:-1.24347290036;CDX1,2,4:-1.27882447826;T:-1.2887519161;EGR1..3:-1.29076893803;BREu{core}:-1.29147040651;NKX3-1:-1.36635094974;RFX2..5_RFXANK_RFXAP:-1.37085624848;CREB1:-1.4101999386;NFIX:-1.41761499788;AHR_ARNT_ARNT2:-1.46225740444;FOXD3:-1.52362973787;ZFP161:-1.62796733252;FOXP1:-1.65799263684;DMAP1_NCOR{1,2}_SMARC:-1.67262489997;HBP1_HMGB_SSRP1_UBTF:-1.83227588493;ZBTB16:-1.85138027794;IKZF2:-2.09615119954;NKX6-1,2:-2.13806316023 | |top_motifs=PPARG:2.19231858905;ZNF423:2.08624415923;HOX{A5,B5}:1.91220491355;TP53:1.8460401299;GLI1..3:1.6608590143;ZNF148:1.54841478896;NKX2-1,4:1.47104256114;TBX4,5:1.41906028904;ESR1:1.4001511294;TFAP4:1.35478213264;ZIC1..3:1.33521409985;TFAP2{A,C}:1.31286450483;GCM1,2:1.30814969512;PAX5:1.29203646827;TEAD1:1.25856321455;MTF1:1.1532216989;SNAI1..3:1.09763567676;NKX2-3_NKX2-5:1.06227467739;TBP:1.02341077143;HAND1,2:1.02226924237;EP300:0.92981315117;FOXM1:0.877218290959;ZNF384:0.819003743898;RXRA_VDR{dimer}:0.778079148165;AR:0.737100805775;XCPE1{core}:0.720464098415;HMX1:0.700062371001;SP1:0.697674297327;ZNF238:0.694707977744;POU3F1..4:0.66776888609;CDC5L:0.652377901199;ZEB1:0.643335168379;TFCP2:0.615581958772;RORA:0.590655007952;NR6A1:0.584928579259;SOX17:0.550585515448;EBF1:0.527681161464;HSF1,2:0.520952780595;STAT5{A,B}:0.508599084651;NR3C1:0.497609695005;TAL1_TCF{3,4,12}:0.447395785875;GZF1:0.446264886456;UFEwm:0.424666521436;ONECUT1,2:0.39252104889;HES1:0.372671119135;RXR{A,B,G}:0.368711148253;bHLH_family:0.338079213721;FOXL1:0.333794326125;FOS_FOS{B,L1}_JUN{B,D}:0.306530476911;HOXA9_MEIS1:0.300155674769;MAZ:0.299807643637;POU6F1:0.288190467925;LHX3,4:0.286423747167;POU2F1..3:0.280743070381;PBX1:0.273540752275;NR5A1,2:0.273075048292;HOX{A6,A7,B6,B7}:0.255517573512;TLX1..3_NFIC{dimer}:0.23776599106;SOX{8,9,10}:0.236951375698;RREB1:0.226858917452;FOXQ1:0.226387996719;KLF4:0.224818220033;MYOD1:0.223962018877;BACH2:0.214577195168;GTF2A1,2:0.201274550148;SMAD1..7,9:0.189089371643;IKZF1:0.187651788712;GFI1:0.162159607466;NKX2-2,8:0.144872424902;E2F1..5:0.142999205643;ALX4:0.105629555646;HIC1:0.0787373671663;HIF1A:0.0731676919902;NFIL3:0.0704837958508;HLF:0.0679600365203;FOSL2:0.0584905042271;EN1,2:0.0574136669345;NFY{A,B,C}:0.0529743055139;SPZ1:0.0477222398608;ZNF143:0.045532118663;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0342629866513;ZBTB6:0.0271884853067;YY1:-0.0275259463031;NFE2:-0.0370117328581;GTF2I:-0.0393641574213;LEF1_TCF7_TCF7L1,2:-0.0408405978338;MAFB:-0.0679534912985;DBP:-0.085684983764;ATF2:-0.10713577903;HNF1A:-0.116039368979;SOX5:-0.118352330161;HMGA1,2:-0.158192935044;GATA6:-0.161261924612;ADNP_IRX_SIX_ZHX:-0.174547075422;XBP1:-0.193849006973;HNF4A_NR2F1,2:-0.19452802129;CEBPA,B_DDIT3:-0.205036718791;FOX{F1,F2,J1}:-0.214702036028;NFE2L2:-0.226810625583;SRF:-0.23122042057;JUN:-0.233410203126;NHLH1,2:-0.237366794447;MYB:-0.258387519419;HOX{A4,D4}:-0.287422301474;TOPORS:-0.290544438216;ESRRA:-0.334336190116;OCT4_SOX2{dimer}:-0.354318172613;ARID5B:-0.361029364734;PAX8:-0.36886834395;NANOG:-0.372520859038;NFKB1_REL_RELA:-0.395941918365;RUNX1..3:-0.398448028805;PRRX1,2:-0.40132543765;ATF6:-0.402197402404;TEF:-0.411483116969;REST:-0.425733600529;NFE2L1:-0.426726358092;RFX1:-0.4318534621;PAX1,9:-0.434659952604;MYBL2:-0.451342468297;GFI1B:-0.464672986276;NKX3-2:-0.467119783792;MED-1{core}:-0.507776730862;MEF2{A,B,C,D}:-0.534205287719;EVI1:-0.535145424346;AIRE:-0.549430426595;ELK1,4_GABP{A,B1}:-0.561144061088;NR1H4:-0.583431766685;PATZ1:-0.586963311752;SREBF1,2:-0.62545947538;TFAP2B:-0.639695841409;POU1F1:-0.652701788952;FOXO1,3,4:-0.655553906199;LMO2:-0.674196085445;NANOG{mouse}:-0.676487383413;PITX1..3:-0.688829393875;ETS1,2:-0.707682153628;SOX2:-0.708388302746;SPIB:-0.713919282037;PAX2:-0.731864268404;CRX:-0.734700409212;ATF4:-0.772248678639;CUX2:-0.774915770662;NFATC1..3:-0.797957752851;MZF1:-0.826534901903;NRF1:-0.828714683541;MYFfamily:-0.838912388572;ELF1,2,4:-0.852436967285;STAT1,3:-0.855362805688;MTE{core}:-0.874144078037;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.880157690138;GATA4:-0.900401569175;VSX1,2:-0.935908531864;RBPJ:-0.93594845534;PRDM1:-0.938906483146;SPI1:-0.945029830444;PDX1:-0.947511016826;ALX1:-0.948694684301;TFDP1:-0.950260499367;FOX{D1,D2}:-0.954135649275;IRF7:-0.959326155741;STAT2,4,6:-0.99674544739;FOX{I1,J2}:-0.998105347184;PAX6:-1.02652244156;ATF5_CREB3:-1.03388502475;FOXN1:-1.10246092692;BPTF:-1.12052050968;FOXA2:-1.16545376034;IRF1,2:-1.17466582026;FOXP3:-1.19209928288;PAX3,7:-1.23016021077;TGIF1:-1.23094085233;PAX4:-1.23735967756;POU5F1:-1.23789821084;TLX2:-1.24347290036;CDX1,2,4:-1.27882447826;T:-1.2887519161;EGR1..3:-1.29076893803;BREu{core}:-1.29147040651;NKX3-1:-1.36635094974;RFX2..5_RFXANK_RFXAP:-1.37085624848;CREB1:-1.4101999386;NFIX:-1.41761499788;AHR_ARNT_ARNT2:-1.46225740444;FOXD3:-1.52362973787;ZFP161:-1.62796733252;FOXP1:-1.65799263684;DMAP1_NCOR{1,2}_SMARC:-1.67262489997;HBP1_HMGB_SSRP1_UBTF:-1.83227588493;ZBTB16:-1.85138027794;IKZF2:-2.09615119954;NKX6-1,2:-2.13806316023 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11355-117H5;search_select_hide=table117:FF:11355-117H5 | |||
}} | }} | ||
Latest revision as of 17:54, 4 June 2020
| Name: | Placental Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11386 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11386
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11386
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.489 |
| 10 | 10 | 0.799 |
| 100 | 100 | 0.327 |
| 101 | 101 | 0.861 |
| 102 | 102 | 0.508 |
| 103 | 103 | 0.135 |
| 104 | 104 | 0.606 |
| 105 | 105 | 0.279 |
| 106 | 106 | 0.0677 |
| 107 | 107 | 0.079 |
| 108 | 108 | 0.55 |
| 109 | 109 | 0.0108 |
| 11 | 11 | 0.11 |
| 110 | 110 | 0.099 |
| 111 | 111 | 0.903 |
| 112 | 112 | 0.623 |
| 113 | 113 | 0.151 |
| 114 | 114 | 0.351 |
| 115 | 115 | 0.848 |
| 116 | 116 | 0.326 |
| 117 | 117 | 0.423 |
| 118 | 118 | 0.257 |
| 119 | 119 | 0.182 |
| 12 | 12 | 0.809 |
| 120 | 120 | 0.12 |
| 121 | 121 | 0.566 |
| 122 | 122 | 0.173 |
| 123 | 123 | 0.319 |
| 124 | 124 | 0.951 |
| 125 | 125 | 0.816 |
| 126 | 126 | 0.532 |
| 127 | 127 | 0.502 |
| 128 | 128 | 0.674 |
| 129 | 129 | 0.184 |
| 13 | 13 | 0.176 |
| 130 | 130 | 0.0776 |
| 131 | 131 | 0.476 |
| 132 | 132 | 0.869 |
| 133 | 133 | 0.102 |
| 134 | 134 | 0.349 |
| 135 | 135 | 0.507 |
| 136 | 136 | 0.372 |
| 137 | 137 | 0.323 |
| 138 | 138 | 0.0578 |
| 139 | 139 | 0.464 |
| 14 | 14 | 0.685 |
| 140 | 140 | 0.879 |
| 141 | 141 | 0.422 |
| 142 | 142 | 0.573 |
| 143 | 143 | 0.406 |
| 144 | 144 | 0.815 |
| 145 | 145 | 0.734 |
| 146 | 146 | 0.0636 |
| 147 | 147 | 0.141 |
| 148 | 148 | 0.9 |
| 149 | 149 | 0.0641 |
| 15 | 15 | 0.325 |
| 150 | 150 | 0.381 |
| 151 | 151 | 0.461 |
| 152 | 152 | 0.0587 |
| 153 | 153 | 0.541 |
| 154 | 154 | 0.588 |
| 155 | 155 | 0.305 |
| 156 | 156 | 0.544 |
| 157 | 157 | 0.465 |
| 158 | 158 | 0.917 |
| 159 | 159 | 0.539 |
| 16 | 16 | 0.0319 |
| 160 | 160 | 0.0172 |
| 161 | 161 | 0.186 |
| 162 | 162 | 0.0561 |
| 163 | 163 | 0.532 |
| 164 | 164 | 0.318 |
| 165 | 165 | 0.772 |
| 166 | 166 | 0.588 |
| 167 | 167 | 0.204 |
| 168 | 168 | 0.356 |
| 169 | 169 | 0.0662 |
| 17 | 17 | 0.0412 |
| 18 | 18 | 0.0966 |
| 19 | 19 | 0.163 |
| 2 | 2 | 0.215 |
| 20 | 20 | 0.994 |
| 21 | 21 | 0.817 |
| 22 | 22 | 0.0787 |
| 23 | 23 | 0.23 |
| 24 | 24 | 0.805 |
| 25 | 25 | 0.977 |
| 26 | 26 | 0.131 |
| 27 | 27 | 0.326 |
| 28 | 28 | 0.7 |
| 29 | 29 | 0.209 |
| 3 | 3 | 0.706 |
| 30 | 30 | 0.186 |
| 31 | 31 | 0.419 |
| 32 | 32 | 7.49436e-9 |
| 33 | 33 | 0.169 |
| 34 | 34 | 0.44 |
| 35 | 35 | 0.744 |
| 36 | 36 | 0.489 |
| 37 | 37 | 0.168 |
| 38 | 38 | 0.374 |
| 39 | 39 | 0.0899 |
| 4 | 4 | 0.196 |
| 40 | 40 | 0.0056 |
| 41 | 41 | 0.607 |
| 42 | 42 | 0.965 |
| 43 | 43 | 0.236 |
| 44 | 44 | 0.606 |
| 45 | 45 | 0.231 |
| 46 | 46 | 0.272 |
| 47 | 47 | 0.433 |
| 48 | 48 | 0.109 |
| 49 | 49 | 0.26 |
| 5 | 5 | 0.713 |
| 50 | 50 | 0.553 |
| 51 | 51 | 0.259 |
| 52 | 52 | 0.431 |
| 53 | 53 | 0.841 |
| 54 | 54 | 0.431 |
| 55 | 55 | 0.984 |
| 56 | 56 | 0.327 |
| 57 | 57 | 0.361 |
| 58 | 58 | 0.854 |
| 59 | 59 | 0.0526 |
| 6 | 6 | 0.953 |
| 60 | 60 | 0.399 |
| 61 | 61 | 0.867 |
| 62 | 62 | 0.921 |
| 63 | 63 | 0.334 |
| 64 | 64 | 0.155 |
| 65 | 65 | 0.234 |
| 66 | 66 | 0.274 |
| 67 | 67 | 0.0803 |
| 68 | 68 | 0.342 |
| 69 | 69 | 7.42423e-4 |
| 7 | 7 | 0.398 |
| 70 | 70 | 0.231 |
| 71 | 71 | 0.127 |
| 72 | 72 | 0.794 |
| 73 | 73 | 0.0489 |
| 74 | 74 | 0.179 |
| 75 | 75 | 0.203 |
| 76 | 76 | 0.411 |
| 77 | 77 | 0.0201 |
| 78 | 78 | 0.453 |
| 79 | 79 | 0.184 |
| 8 | 8 | 0.181 |
| 80 | 80 | 0.866 |
| 81 | 81 | 0.763 |
| 82 | 82 | 0.351 |
| 83 | 83 | 0.967 |
| 84 | 84 | 0.414 |
| 85 | 85 | 0.355 |
| 86 | 86 | 0.706 |
| 87 | 87 | 0.37 |
| 88 | 88 | 0.412 |
| 89 | 89 | 0.147 |
| 9 | 9 | 0.488 |
| 90 | 90 | 0.162 |
| 91 | 91 | 0.0557 |
| 92 | 92 | 0.994 |
| 93 | 93 | 0.966 |
| 94 | 94 | 0.365 |
| 95 | 95 | 0.185 |
| 96 | 96 | 0.856 |
| 97 | 97 | 0.242 |
| 98 | 98 | 0.434 |
| 99 | 99 | 0.0192 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11386
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
