FF:11355-117H5: Difference between revisions

Latest revision as of 17:54, 4 June 2020

Name:	Placental Epithelial Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11386
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	placenta
dev stage	NA
sex	female
age	NA
cell type	placental epithelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2544
catalog number	CA230-R10f
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005834

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11386		CAGE		DRX008405		DRR009277

Accession ID Hg19

Library id		BAM		CTSS
CNhs11386		DRZ000702		DRZ002087

Accession ID Hg38

Library id		BAM		CTSS
CNhs11386		DRZ012052		DRZ013437

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005834

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10006.CGTACG		sRNA-Seq		DRX037087		DRR041453

Accession ID Hg19

Library id		BAM		CTSS
SRhi10006.CGTACG		DRZ007095

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.188
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0182
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.426
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.884
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.02
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.269
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.257
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.609
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.672
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.636
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.467
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.759
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.331
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.426
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.388
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.426
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.778
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.636
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11386

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.745
MA0003.1	MA0003.1	0.221
MA0004.1	MA0004.1	0.681
MA0006.1	MA0006.1	0.109
MA0007.1	MA0007.1	0.00265
MA0009.1	MA0009.1	0.382
MA0014.1	MA0014.1	0.556
MA0017.1	MA0017.1	0.766
MA0018.2	MA0018.2	0.00508
MA0019.1	MA0019.1	0.0913
MA0024.1	MA0024.1	0.325
MA0025.1	MA0025.1	0.55
MA0027.1	MA0027.1	0.813
MA0028.1	MA0028.1	0.266
MA0029.1	MA0029.1	0.359
MA0030.1	MA0030.1	0.282
MA0031.1	MA0031.1	0.2
MA0035.2	MA0035.2	0.657
MA0038.1	MA0038.1	0.238
MA0039.2	MA0039.2	0.124
MA0040.1	MA0040.1	0.543
MA0041.1	MA0041.1	0.491
MA0042.1	MA0042.1	0.738
MA0043.1	MA0043.1	0.00195
MA0046.1	MA0046.1	0.571
MA0047.2	MA0047.2	0.915
MA0048.1	MA0048.1	0.729
MA0050.1	MA0050.1	3.64259e-8
MA0051.1	MA0051.1	6.30029e-5
MA0052.1	MA0052.1	0.872
MA0055.1	MA0055.1	0.0687
MA0057.1	MA0057.1	0.624
MA0058.1	MA0058.1	0.746
MA0059.1	MA0059.1	0.267
MA0060.1	MA0060.1	0.274
MA0061.1	MA0061.1	0.93
MA0062.2	MA0062.2	0.00305
MA0065.2	MA0065.2	0.0762
MA0066.1	MA0066.1	0.181
MA0067.1	MA0067.1	0.0254
MA0068.1	MA0068.1	0.0357
MA0069.1	MA0069.1	0.728
MA0070.1	MA0070.1	0.187
MA0071.1	MA0071.1	0.294
MA0072.1	MA0072.1	0.447
MA0073.1	MA0073.1	0.442
MA0074.1	MA0074.1	0.519
MA0076.1	MA0076.1	0.0519
MA0077.1	MA0077.1	0.492
MA0078.1	MA0078.1	0.536
MA0079.2	MA0079.2	0.642
MA0080.2	MA0080.2	1.06908e-8
MA0081.1	MA0081.1	0.00892
MA0083.1	MA0083.1	0.465
MA0084.1	MA0084.1	0.856
MA0087.1	MA0087.1	0.471
MA0088.1	MA0088.1	0.416
MA0090.1	MA0090.1	2.1633e-4
MA0091.1	MA0091.1	0.13
MA0092.1	MA0092.1	0.333
MA0093.1	MA0093.1	0.702
MA0099.2	MA0099.2	9.8035e-5
MA0100.1	MA0100.1	0.134
MA0101.1	MA0101.1	0.0643
MA0102.2	MA0102.2	0.00148
MA0103.1	MA0103.1	0.0128
MA0104.2	MA0104.2	0.611
MA0105.1	MA0105.1	0.346
MA0106.1	MA0106.1	0.0754
MA0107.1	MA0107.1	0.0428
MA0108.2	MA0108.2	0.0164
MA0111.1	MA0111.1	0.921
MA0112.2	MA0112.2	0.00308
MA0113.1	MA0113.1	6.6057e-4
MA0114.1	MA0114.1	0.238
MA0115.1	MA0115.1	0.667
MA0116.1	MA0116.1	0.0439
MA0117.1	MA0117.1	0.58
MA0119.1	MA0119.1	0.28
MA0122.1	MA0122.1	0.729
MA0124.1	MA0124.1	0.474
MA0125.1	MA0125.1	0.89
MA0131.1	MA0131.1	0.252
MA0135.1	MA0135.1	0.743
MA0136.1	MA0136.1	1.81404e-8
MA0137.2	MA0137.2	0.0489
MA0138.2	MA0138.2	0.207
MA0139.1	MA0139.1	0.571
MA0140.1	MA0140.1	0.796
MA0141.1	MA0141.1	0.314
MA0142.1	MA0142.1	0.387
MA0143.1	MA0143.1	0.549
MA0144.1	MA0144.1	0.866
MA0145.1	MA0145.1	0.153
MA0146.1	MA0146.1	0.0361
MA0147.1	MA0147.1	0.905
MA0148.1	MA0148.1	0.988
MA0149.1	MA0149.1	0.5
MA0150.1	MA0150.1	0.953
MA0152.1	MA0152.1	0.811
MA0153.1	MA0153.1	0.355
MA0154.1	MA0154.1	0.0824
MA0155.1	MA0155.1	0.165
MA0156.1	MA0156.1	3.30076e-7
MA0157.1	MA0157.1	0.247
MA0159.1	MA0159.1	0.209
MA0160.1	MA0160.1	0.488
MA0162.1	MA0162.1	0.0557
MA0163.1	MA0163.1	0.0213
MA0164.1	MA0164.1	0.74
MA0258.1	MA0258.1	0.0134
MA0259.1	MA0259.1	0.795

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11386

Novel motif	Logo	P-value
1	1	0.489
10	10	0.799
100	100	0.327
101	101	0.861
102	102	0.508
103	103	0.135
104	104	0.606
105	105	0.279
106	106	0.0677
107	107	0.079
108	108	0.55
109	109	0.0108
11	11	0.11
110	110	0.099
111	111	0.903
112	112	0.623
113	113	0.151
114	114	0.351
115	115	0.848
116	116	0.326
117	117	0.423
118	118	0.257
119	119	0.182
12	12	0.809
120	120	0.12
121	121	0.566
122	122	0.173
123	123	0.319
124	124	0.951
125	125	0.816
126	126	0.532
127	127	0.502
128	128	0.674
129	129	0.184
13	13	0.176
130	130	0.0776
131	131	0.476
132	132	0.869
133	133	0.102
134	134	0.349
135	135	0.507
136	136	0.372
137	137	0.323
138	138	0.0578
139	139	0.464
14	14	0.685
140	140	0.879
141	141	0.422
142	142	0.573
143	143	0.406
144	144	0.815
145	145	0.734
146	146	0.0636
147	147	0.141
148	148	0.9
149	149	0.0641
15	15	0.325
150	150	0.381
151	151	0.461
152	152	0.0587
153	153	0.541
154	154	0.588
155	155	0.305
156	156	0.544
157	157	0.465
158	158	0.917
159	159	0.539
16	16	0.0319
160	160	0.0172
161	161	0.186
162	162	0.0561
163	163	0.532
164	164	0.318
165	165	0.772
166	166	0.588
167	167	0.204
168	168	0.356
169	169	0.0662
17	17	0.0412
18	18	0.0966
19	19	0.163
2	2	0.215
20	20	0.994
21	21	0.817
22	22	0.0787
23	23	0.23
24	24	0.805
25	25	0.977
26	26	0.131
27	27	0.326
28	28	0.7
29	29	0.209
3	3	0.706
30	30	0.186
31	31	0.419
32	32	7.49436e-9
33	33	0.169
34	34	0.44
35	35	0.744
36	36	0.489
37	37	0.168
38	38	0.374
39	39	0.0899
4	4	0.196
40	40	0.0056
41	41	0.607
42	42	0.965
43	43	0.236
44	44	0.606
45	45	0.231
46	46	0.272
47	47	0.433
48	48	0.109
49	49	0.26
5	5	0.713
50	50	0.553
51	51	0.259
52	52	0.431
53	53	0.841
54	54	0.431
55	55	0.984
56	56	0.327
57	57	0.361
58	58	0.854
59	59	0.0526
6	6	0.953
60	60	0.399
61	61	0.867
62	62	0.921
63	63	0.334
64	64	0.155
65	65	0.234
66	66	0.274
67	67	0.0803
68	68	0.342
69	69	7.42423e-4
7	7	0.398
70	70	0.231
71	71	0.127
72	72	0.794
73	73	0.0489
74	74	0.179
75	75	0.203
76	76	0.411
77	77	0.0201
78	78	0.453
79	79	0.184
8	8	0.181
80	80	0.866
81	81	0.763
82	82	0.351
83	83	0.967
84	84	0.414
85	85	0.355
86	86	0.706
87	87	0.37
88	88	0.412
89	89	0.147
9	9	0.488
90	90	0.162
91	91	0.0557
92	92	0.994
93	93	0.966
94	94	0.365
95	95	0.185
96	96	0.856
97	97	0.242
98	98	0.434
99	99	0.0192

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11386

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000136 human placental epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008297
+|DRA_sample_Accession=CAGE@SAMD00005834
-|accession_numbers=CAGE;DRX008405;DRR009277;DRZ000702;DRZ002087
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005834
+|accession_numbers=CAGE;DRX008405;DRR009277;DRZ000702;DRZ002087;DRZ012052;DRZ013437
+|accession_numbers_RNASeq=sRNA-Seq;DRX037087;DRR041453;DRZ007095
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.20!156.45!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.04!282.94!OSR1;;chr19:46801639..46801699,+!p1@HIF3A!1.93!83.22!HIF3A;;chr10:8096631..8096660,+!p1@GATA3!1.91!96.53!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.84!79.89!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.81!63.25!ZBED2;;chr16:31076332..31076388,-!p3@ZNF668!1.61!39.94!ZNF668;;chr19:46800289..46800327,+!p2@HIF3A!1.61!39.94!HIF3A;;chr8:102504651..102504683,+!p1@GRHL2!1.59!38.28!GRHL2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!38.28!ZBED1;;chr8:49833948..49833973,-!p2@SNAI2!1.55!209.71!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!166.44!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.51!31.62!IRX2;;chr4:174450089..174450153,-!p2@HAND2!1.51!31.62!HAND2;;chr14:75988771..75988826,+!p1@BATF!1.48!38.28!BATF;;chr5:153857800..153857812,-!p2@HAND1!1.47!28.29!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.47!28.29!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.43!31.62!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.41!24.97!IRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.94!TFAP2A;;chr1:209979467..209979494,-!p1@IRF6!1.39!26.63!IRF6;;chr8:49833978..49833996,-!p1@SNAI2!1.36!429.40!SNAI2;;chr5:3595934..3595957,+!p2@IRX1!1.35!21.64!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.35!21.64!HAND2;;chr11:46299539..46299620,+!p2@CREB3L1!1.32!33.29!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.29!18.31!IRX1;;chr8:102504979..102505010,+!p2@GRHL2!1.29!18.31!GRHL2;;chr4:188916918..188916942,+!p1@ZFP42!1.25!16.64!ZFP42;;chr5:153857819..153857824,-!p3@HAND1!1.20!14.98!HAND1;;chr8:102504690..102504704,+!p3@GRHL2!1.20!14.98!GRHL2;;chr17:46132044..46132080,+!p4@NFE2L1!1.20!14.98!NFE2L1;;chr17:7493405..7493419,-!p1@SOX15!1.20!14.98!SOX15;;chr5:2751785..2751808,-!p2@IRX2!1.16!13.31!IRX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.64!ZBTB16;;chr8:55370487..55370503,+!p1@SOX17!1.10!11.65!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!1.04!18.31!NR2F2;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.65!GATA3;;chr2:45236540..45236577,-!p1@SIX2!1.04!9.99!SIX2;;chr17:46671108..46671147,-!p1@HOXB5!1.04!9.99!HOXB5;;chr11:47236584..47236679,+!p1@DDB2!0.98!94.87!DDB2;;chr16:86600426..86600441,+!p1@FOXC2!0.98!21.64!FOXC2;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.65!CENPT;;chr2:231084820..231084836,-!p5@SP110!0.98!9.99!SP110;;chr6:1389789..1389821,+!p1@FOXF2!0.97!11.65!FOXF2;;chr3:111314230..111314241,-!p2@ZBED2!0.97!8.32!ZBED2;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.32!GATA3;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.32!CREB3L1;;chr19:46806868..46806883,+!p3@HIF3A!0.97!8.32!HIF3A;;chr16:67881647..67881663,-!p3@CENPT!0.97!8.32!CENPT;;chr16:86612320..86612394,+!p1@FOXL1!0.97!8.32!FOXL1;;chr20:39317868..39317884,-!p1@MAFB!0.96!99.86!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!0.96!23.30!EPAS1;;chr1:59249732..59249749,-!p2@JUN!0.94!96.53!JUN;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.32!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.91!119.83!KLF4;;chr6:10412576..10412599,-!p5@TFAP2A!0.88!6.66!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!0.88!6.66!TFAP2A;;chr7:27142290..27142310,-!p1@HOXA2!0.88!6.66!HOXA2;;chr20:18038521..18038571,-!p1@OVOL2!0.88!6.66!OVOL2;;chr4:57522598..57522664,-!p3@HOPX!0.88!6.66!HOPX;;chr12:54447637..54447659,+!p4@HOXC4!0.88!6.66!HOXC4;;chr17:46675558..46675577,-!p2@HOXB6!0.88!6.66!HOXB6;;chr19:7584815..7584829,+!p2@ZNF358!0.85!8.32!ZNF358;;chr1:38512457..38512474,-!p1@POU3F1!0.85!6.66!POU3F1;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.63!ZNF521;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!9.99!ZBTB16;;chr15:96869511..96869525,+!p16@NR2F2!0.84!6.66!NR2F2;;chr10:77161504..77161530,-!p1@ZNF503!0.83!83.22!ZNF503;;chr19:45261550..45261641,+!p6@BCL3!0.83!9.99!BCL3;;chr10:77161650..77161661,-!p4@ZNF503!0.83!8.32!ZNF503;;chr15:96869222..96869251,+!p18@NR2F2!0.82!6.66!NR2F2;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.53!MYBL2;;chr12:66218836..66218888,+!p1@HMGA2!0.81!54.92!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.81!26.63!FOXD1;;chr19:7580944..7581031,+!p1@ZNF358!0.80!174.76!ZNF358;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.32!ETV4;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.66!HOXC4;;chr6:85473156..85473210,-!p2@TBX18!0.80!6.66!TBX18;;chr17:7492684..7492778,-!p2@SOX15!0.79!11.65!SOX15;;chr20:55204351..55204377,+!p1@TFAP2C!0.79!6.66!TFAP2C;;chr19:926055..926068,+!p2@ARID3A!0.78!11.65!ARID3A;;chr19:47523058..47523114,+!p1@NPAS1!0.78!4.99!NPAS1;;chr1:209979411..209979433,-!p2@IRF6!0.78!4.99!IRF6;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.78!4.99!ZNF469;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!4.99!TFAP2A;;chr2:16080659..16080685,+!p1@MYCN!0.78!4.99!MYCN;;chr2:19553530..19553547,-!p3@OSR1!0.78!4.99!OSR1;;chr2:19558327..19558334,-!p2@OSR1!0.78!4.99!OSR1;;chr2:45236579..45236596,-!p2@SIX2!0.78!4.99!SIX2;;chr4:299227..299272,-!p1@ZNF732!0.78!4.99!ZNF732;;chr11:113930401..113930422,+!p3@ZBTB16!0.78!4.99!ZBTB16;;chr12:54447219..54447237,+!p6@HOXC4!0.78!4.99!HOXC4;;chr19:17356189..17356221,-!p2@NR2F6!0.77!8.32!NR2F6;;chr6:32095523..32095564,-!p2@ATF6B!0.76!6.66!ATF6B;;chr20:42295713..42295738,+!p2@MYBL2!0.75!29.96!MYBL2;;chr10:77161533..77161546,-!p2@ZNF503!0.75!19.97!ZNF503;;chr3:52001448..52001478,-!p2@PCBP4!0.74!69.90!PCBP4;;chr15:96873861..96873872,+!p9@NR2F2!0.74!9.99!NR2F2;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.32!EPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.27!PPP1R13L;;chr3:52001426..52001447,-!p3@PCBP4!0.73!13.31!PCBP4;;chr15:96869292..96869320,+!p15@NR2F2!0.73!6.66!NR2F2;;chr3:24536253..24536328,-!p1@THRB!0.71!8.32!THRB;;chr11:85376097..85376108,-!p2@CREBZF!0.71!8.32!CREBZF;;chr8:145159277..145159282,+!p7@MAF1!0.71!6.66!MAF1;;chr20:306051..306096,+!p3@SOX12!0.70!11.65!SOX12;;chr20:2673383..2673441,+!p1@EBF4!0.70!6.66!EBF4;;chr6:151712764..151712785,-!p4@ZBTB2!0.70!6.66!ZBTB2;;chr6:33285505..33285529,-!p1@ZBTB22!0.69!29.96!ZBTB22;;chr17:38465413..38465438,+!p5@RARA!0.69!6.66!RARA;;chr16:29818160..29818188,+!p6@MAZ!0.68!19.97!MAZ;;chr5:174151553..174151610,+!p1@MSX2!0.68!6.66!MSX2;;chr19:47922750..47922795,-!p1@MEIS3!0.68!6.66!MEIS3;;chr1:149858461..149858479,+!p1@BOLA1!0.67!1667.68!BOLA1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.67!6.66!MEIS3P1;;chr6:21594391..21594431,+!p9@SOX4!0.67!4.99!SOX4;;chr16:3185125..3185173,+!p1@ZNF213!0.66!9.99!ZNF213;;chr9:110251836..110251887,-!p4@KLF4!0.66!4.99!KLF4;;chr4:81118647..81118666,+!p1@PRDM8!0.66!4.99!PRDM8;;chr17:3571863..3571881,-!p1@TAX1BP3!0.65!292.93!TAX1BP3;;chr1:59249707..59249727,-!p1@JUN!0.65!171.43!JUN;;chr6:34204921..34204939,+!p3@HMGA1!0.65!121.50!HMGA1;;chr5:176738887..176738934,-!p1@MXD3!0.65!26.63!MXD3;;chr19:36545128..36545203,-!p1@THAP8!0.65!18.31!THAP8;;chr10:77161133..77161176,-!p3@ZNF503!0.65!8.32!ZNF503;;chr4:2263809..2263854,-!p1@MXD4!0.64!153.12!MXD4;;chr19:59031131..59031193,-!p1@ZBTB45!0.64!51.59!ZBTB45;;chr12:53625966..53626012,-!p2@RARG!0.64!9.99!RARG;;chr5:178368186..178368238,+!p1@ZNF454!0.64!6.66!ZNF454;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.33!TFAP2A;;chr6:29648890..29648944,-!p1@ZFP57!0.64!3.33!ZFP57;;chr6:391743..391759,+!p1@IRF4!0.64!3.33!IRF4;;chr7:101917447..101917479,+!p4@CUX1!0.64!3.33!CUX1;;chr7:1577899..1577943,+!p3@MAFK!0.64!3.33!MAFK;;chr10:8097295..8097320,+!p6@GATA3!0.64!3.33!GATA3;;chr11:125034586..125034604,+!p3@PKNOX2!0.64!3.33!PKNOX2;;chr11:46333883..46333900,+!p8@CREB3L1!0.64!3.33!CREB3L1;;chr12:3068634..3068656,+!p5@TEAD4!0.64!3.33!TEAD4;;chr14:37131058..37131139,+!p1@PAX9!0.64!3.33!PAX9;;chr19:7584204..7584218,+!p9@ZNF358!0.64!3.33!ZNF358;;chr1:201979743..201979762,+!p1@ELF3!0.64!3.33!ELF3;;chr20:18038486..18038520,-!p2@OVOL2!0.64!3.33!OVOL2;;chr16:67881534..67881549,-!p4@CENPT!0.64!3.33!CENPT;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.33!FOXC2;;chr22:24093154..24093183,-!p2@ZNF70!0.64!3.33!ZNF70;;chr2:66666432..66666462,+!p7@MEIS1!0.64!3.33!MEIS1;;chr3:138665937..138665968,-!p1@FOXL2!0.64!3.33!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.64!3.33!FOXL2;;chr3:24536332..24536358,-!p2@THRB!0.64!3.33!THRB;;chr3:71631217..71631234,-!p33@FOXP1!0.64!3.33!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!0.64!3.33!NR3C2;;chr4:149365827..149365870,-!p5@NR3C2!0.64!3.33!NR3C2;;chrX:56258900..56258917,+!p4@KLF8!0.64!3.33!KLF8;;chr9:132427883..132427951,+!p2@PRRX2!0.64!3.33!PRRX2;;chr16:67867749..67867852,-!p1@CENPT!0.63!88.21!CENPT;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.97!HIF1A;;chr12:66218255..66218304,+!p3@HMGA2!0.63!9.99!HMGA2;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.32!PPARG;;chr2:46524506..46524514,+!p5@EPAS1!0.63!6.66!EPAS1;;chr2:174830540..174830563,-!p8@SP3!0.63!4.99!SP3;;chr13:73633131..73633149,+!p1@KLF5!0.62!39.94!KLF5;;chr9:117150254..117150271,-!p1@AKNA!0.62!9.99!AKNA;;chr12:66218212..66218244,+!p5@HMGA2!0.62!4.99!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.62!4.99!PAWR;;chr12:66218598..66218645,+!p2@HMGA2!0.61!16.64!HMGA2;;chr7:6655225..6655279,+!p1@ENST00000457543!0.61!4.99!ZNF853;;chrX:106960285..106960299,-!p1@TSC22D3!0.60!96.53!TSC22D3;;chr16:29817841..29817865,+!p1@MAZ!0.60!78.22!MAZ;;chr1:249132410..249132456,+!p1@ZNF672!0.60!26.63!ZNF672;;chr2:28616358..28616380,+!p3@FOSL2!0.60!18.31!FOSL2;;chr20:45142154..45142227,-!p1@ZNF334!0.60!6.66!ZNF334;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.99!ETV4;;chr12:3068196..3068232,+!p9@TEAD4!0.60!3.33!TEAD4;;chr16:29817789..29817838,+!p2@MAZ!0.59!48.27!MAZ;;chr11:46722560..46722595,+!p1@ZNF408!0.59!18.31!ZNF408;;chr1:8939265..8939367,-!p5@ENO1!0.59!6.66!ENO1;;chr19:56671612..56671626,+!p4@ZNF444!0.59!4.99!ZNF444;;chr6:144329531..144329546,-!p5@PLAGL1!0.59!4.99!PLAGL1;;chr22:21356378..21356422,-!p2@THAP7!0.58!29.96!THAP7;;chr10:51572408..51572454,+!p3@NCOA4!0.58!19.97!NCOA4;;chr19:926001..926046,+!p1@ARID3A!0.58!11.65!ARID3A;;chr1:249132484..249132505,+!p4@ZNF672!0.58!9.99!ZNF672;;chr16:31085058..31085078,-!p2@ZNF668!0.58!6.66!ZNF668;;chr16:3185051..3185068,+!p3@ZNF213!0.58!4.99!ZNF213;;chr19:44124019..44124030,-!p2@ZNF428!0.58!3.33!ZNF428;;chr3:12330560..12330579,+!p1@PPARG!0.58!3.33!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.5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P!0.19!1.66!TBP;;chr2:214015111..214015179,-!p1@IKZF2!0.19!1.66!IKZF2;;chr3:52001396..52001425,-!p4@PCBP4!0.19!1.66!PCBP4;;chr4:56413067..56413086,-!p4@CLOCK!0.19!1.66!CLOCK;;chr10:21823218..21823240,+!p3@MLLT10!0.19!1.66!MLLT10;;chr12:124457725..124457736,+!p2@ZNF664!0.19!1.66!ZNF664;;chr19:20011775..20011800,+!p2@ZNF93!0.19!1.66!ZNF93;;chr19:37407172..37407217,-!p2@ZNF829!0.19!1.66!ZNF829;;chr7:100076765..100076861,-!p1@TSC22D4!0.18!46.60!TSC22D4;;chr8:145159415..145159438,+!p2@MAF1!0.18!26.63!MAF1;;chr5:16465869..16465891,-!p2@ZNF622!0.18!18.31!ZNF622;;chr7:99214559..99214601,+!p1@ZNF498!0.18!16.64!ZNF498;;chr20:44600810..44600853,-!p1@ZNF335!0.18!9.99!ZNF335;;chr1:149871135..149871169,+!p2@BOLA1!0.18!8.32!BOLA1;;chr17:17740330..17740349,-!p3@SREBF1!0.18!8.32!SREBF1;;chr15:85144229..85144273,+!p1@ZSCAN2!0.18!6.66!ZSCAN2;;chr1:249153268..249153298,-!p1@ZNF692!0.18!6.66!ZNF692;;chr1:14075865..14075896,+!p3@PRDM2!0.18!4.99!PRDM2;;chr10:35415978..35416050,+!p5@CREM!0.18!4.99!CREM;;chr11:65686732..65686756,+!p2@DRAP1!0.18!4.99!DRAP1;;chr10:44070016..44070069,-!p1@ZNF239!0.18!3.33!ZNF239;;chr13:74708411..74708436,-!p3@KLF12!0.18!3.33!KLF12;;chr19:19516507..19516539,+!p7@GATAD2A!0.18!3.33!GATAD2A;;chr16:73092791..73092831,-!p4@ZFHX3!0.18!1.66!ZFHX3;;chr19:21265028..21265052,+!p2@ZNF714!0.18!1.66!ZNF714;;chr6:15249128..15249177,+!p4@JARID2!0.18!1.66!JARID2;;chr19:55987998..55988026,+!p2@ZNF628!0.18!1.66!ZNF628;;chr1:247171347..247171366,-!p2@ZNF695!0.18!1.66!ZNF695;;chr19:6424813..6424835,-!p1@KHSRP!0.17!83.22!KHSRP;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.17!76.56!PCBP4;;chr6:21593973..21593988,+!p1@SOX4!0.17!48.27!SOX4;;chr20:39946279..39946356,-!p1@ZHX3!0.17!19.97!ZHX3;;chr12:124873357..124873401,-!p1@NCOR2!0.17!14.98!NCOR2;;chr6:144329384..144329405,-!p1@PLAGL1!0.17!14.98!PLAGL1;;chr6:33168126..33168180,-!p2@RXRB!0.17!13.31!RXRB;;chr12:56512026..56512064,+!p1@ZC3H10,p2@ESYT1!0.17!11.65!ZC3H10;;chr19:9649268..9649298,-!p1@ZNF426!0.17!8.32!ZNF426;;chr16:4817129..4817198,-!p1@ZNF500!0.17!6.66!ZNF500;;chr1:211433275..211433335,+!p2@RCOR3!0.17!3.33!RCOR3;;chr9:2017063..2017144,+!p4@SMARCA2!0.17!3.33!SMARCA2;;chr9:3526360..3526421,-!p5@RFX3!0.17!1.66!RFX3;;chr1:33004734..33004807,+!p2@ZBTB8A!0.17!1.66!ZBTB8A;;chr20:39946400..39946423,-!p3@ZHX3!0.17!1.66!ZHX3;;chr15:56535468..56535521,-!p2@RFX7!0.17!1.66!RFX7;;chr15:96874063..96874074,+!p10@NR2F2!0.17!1.66!NR2F2;;chr18:3448455..3448480,+!p5@TGIF1!0.17!1.66!TGIF1;;chr8:42698494..42698507,-!p3@THAP1!0.17!1.66!THAP1;;chr3:40566488..40566502,+!p3@ZNF621!0.17!1.66!ZNF621;;chr3:52719870..52719883,-!p4@PBRM1!0.17!1.66!PBRM1;;chr15:96873921..96873946,+!p1@NR2F2!0.16!36.62!NR2F2;;chr1:161015706..161015747,-!p1@USF1!0.16!14.98!USF1;;chr14:23755297..23755350,-!p1@HOMEZ!0.16!14.98!HOMEZ;;chr8:144718171..144718244,+!p1@ZNF623!0.16!13.31!ZNF623;;chr13:41635512..41635539,-!p2@ELF1!0.16!6.66!ELF1;;chr10:44101850..44101896,+!p1@ZNF485!0.16!3.33!ZNF485;;chr16:29817433..29817468,+!p8@MAZ!0.16!3.33!MAZ;;chr17:4890695..4890773,-!p2@CAMTA2!0.16!3.33!CAMTA2;;chr7:148787768..148787825,-!p1@ZNF786!0.16!3.33!ZNF786;;chr12:66218183..66218209,+!p4@HMGA2!0.16!1.66!HMGA2;;chr13:41635067..41635100,-!p5@ELF1!0.16!1.66!ELF1;;chr9:2017420..2017433,+!p6@SMARCA2!0.16!1.66!SMARCA2;;chr19:57702832..57702844,+!p2@ZNF264!0.16!1.66!ZNF264;;chr1:151032142..151032195,+!p5@MLLT11!0.16!1.66!MLLT11;;chr1:151253991..151254031,+!p2@ZNF687!0.16!1.66!ZNF687;;chr20:48807456..48807475,+!p3@CEBPB!0.16!1.66!CEBPB;;chr16:89787973..89788001,+!p3@ZNF276!0.16!1.66!ZNF276;;chr18:51750414..51750449,-!p5@MBD2!0.16!1.66!MBD2;;chr19:22235279..22235301,+!p1@ZNF257!0.16!1.66!ZNF257;;chr19:24097706..24097731,+!p2@ZNF726!0.16!1.66!ZNF726;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002577;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001987;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11355-117H5
 |is_a=EFO:0002091;;FF:0000136
 |is_obsolete=
 |library_id=CNhs11386
-|library_ids=CNhs11386
+|library_id_phase_based=2:CNhs11386
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11355
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.CGTACG.11355
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11355
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.CGTACG.11355
 |name=Placental Epithelial Cells, donor2
 |namespace=FANTOM5
@@ Line 49: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11386,LSID771,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10006,,,
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@@ Line 65: / Line 81: @@
 |rna_tube_id=117H5
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10006.CGTACG
 |sample_age=
 |sample_category=primary cells
@@ Line 88: / Line 105: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11355-117H5;search_select_hide=table117:FF:11355-117H5
 }}

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FF:11355-117H5: Difference between revisions

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Latest revision as of 17:54, 4 June 2020

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