FF:11355-117H5: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005834 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005834 | ||
|accession_numbers=CAGE;DRX008405;DRR009277;DRZ000702;DRZ002087;DRZ012052;DRZ013437 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037087;DRR041453;DRZ007095 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000136 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor2.CNhs11386.11355-117H5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11355-117H5 | |id=FF:11355-117H5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000136 | ||
|is_obsolete= | |||
|library_id=CNhs11386 | |||
|library_id_phase_based=2:CNhs11386 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11355 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.CGTACG.11355 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11355 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.CGTACG.11355 | |||
|name=Placental Epithelial Cells, donor2 | |name=Placental Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11386,LSID771,release012,COMPLETED | |profile_hcage=CNhs11386,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.474086218752008,0.282076848846365,0,0,-0.427279086909571,0,0,0,0,0,0,0,0,0,0.508238503092769,0,-0.0504125515893149,0,0,0,0,0.194170714601068,-0.305472230898407,0,0.0385379345354087,-0.0683442610773682,0,0,0,0,0.436762943948311,0,-0.120879483793741,-0.0827201683234173,0.0445883976858198,-0.198626844882309,-0.04680465889238,0,0,0,-0.335874143249809,0.0224656769006402,0,0,0.0910161439330445,-0.181349618560659,0,0,-0.391044581551635,0,-0.47578009224789,0.267706630317121,0,-0.11056176286019,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0,0,0.487911178602142,0,0,0.263072214088767,0.0562439921809024,-0.0699246757448686,-0.287836810601466,0,-0.302389727009913,0.188088952060473,0.0229986050269775,-0.241714938691366,-0.147401849371139,0.779516755684512,0.129990347357659,-0.206372832705468,0.369513722255142,-0.0526324911062005,-0.000334636294191171,-0.013343610150512,0.0151773153543886,0.323292582930878,0,0,0,0.810226477253803,0,-0.272321377109518,0.393967616556981,0.0253864122038879,0.499264787203076,0.0384918173875796,0.182161304522168,-0.026525024385454,-0.0395325284566706,-0.457436452896595,0.0026033663017101,-0.4215723249037,0,0,0,0.0595314792429755,0.0981702239264325,0.161822683341257,0,-0.0583854704411437,0.568014108967965,0,0.135784262076906,0.15839119211135,0,0,0.0575811391739216,0,0,0,0,0,0.000850016314726254,-0.539492143030166,-0.232855561555545,0,0.051284423127133,0.00223094200280871,0.144755085164291,0,-0.0662958168781893,-0.146009897457394,0,0.132958186773601,0,-0.252019383595731,0.0809869875718233,-0.108397083820844,-0.422394805391737,-0.0584468268118252,-0.0941135637303976,-0.0720222817049921,-0.158631083977536,-0.363347873420389,-0.101364614532639,0.337465158894549,-0.0483481079959531,-0.457952759148543,-0.679498131621524,0,0.255071575939859,0,-0.138104345506349,0,-0.121546433458418,0,0.222140899978419,0.343648579560515,-0.439289374580686,-0.0443369124330231,0,0.358965070583869,-0.788130937773974,0.0526592990915615,0,-0.0273855979293111,0,0.275224908035198,-0.272103975142746,-0.211650427864589,-0.138989456679195,0,-0.153721788344323,0,0,-0.253470082832959,-0.235476037764389,0,0.273623983133891,0.0271554558319373,0.27986628983846,0.309620917934903,0,0,0.323798137241635,0,0,0.434916526475498,0,0.0165750460867001,-0.253326341486756,0,0.747040688051963,0,0,-0.177527765965176,0,-0.054942838063407,0,0,-0.249881296598824,-0.116628112990133,0,0,0,-0.105801718732826,0,0,0,0,0.0082496168766052,0,0,-0.498171665927322,0.070758661153389,0,0,0,0,0,0,0,0,0,0,0.0852936592527611,-0.128338781557253,0.654631440843516,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.87750468707906,0,0,0,-0.27695440160179,0,0,0,0,-0.104507139437076,0,0,0,0,-0.0224048131536034,-0.0815818795468414,0,-0.255111847875644,-0.0010920638944989,0.463085633415143,0,0,-0.261347131789888,0,0,-0.399585951587914,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.24646724837623,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.301401758476217,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.139215129784047,0,0,0.500286724326423,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.871275073046919,0,0,0,0,0,0,0,0.502815558313846,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0253203430296134,0,-0.107375938127335,-0.0930253774125045,0,0,-0.0198323569481232,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.075180844971791,0.504464732422467,-0.189183161943829,0,0,0,-0.054385572482455,0,0,0.00483093051512629,0,0.569580982626432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372219989569542,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0858543275296212,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.636358370045334,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.202393816423809,0,0,0,0,0,0,0,0,0,0,0,0,0.364271812219711,0,0,0,0,0,0,0,0,0,0.425591991369837,-0.0484300422256687,0,0,0,0,0,0,0,0,1.64614105326945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522392658278145,1.17097659781846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0365448910847316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA230-R10f | |rna_catalog_number=CA230-R10f | ||
| Line 56: | Line 81: | ||
|rna_tube_id=117H5 | |rna_tube_id=117H5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.CGTACG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.69254218638554e-223!GO:0005737;cytoplasm;1.46327378915446e-187!GO:0043226;organelle;1.11983417833617e-142!GO:0043229;intracellular organelle;3.07802902039044e-142!GO:0044444;cytoplasmic part;1.04384697171368e-137!GO:0044422;organelle part;2.90634314875486e-137!GO:0044446;intracellular organelle part;7.37491685196444e-136!GO:0043231;intracellular membrane-bound organelle;4.13550852232955e-135!GO:0043227;membrane-bound organelle;7.68638905873572e-135!GO:0032991;macromolecular complex;1.21464265196879e-84!GO:0030529;ribonucleoprotein complex;5.31745343264313e-71!GO:0005515;protein binding;1.35332135652791e-67!GO:0005739;mitochondrion;2.64400177253474e-65!GO:0044237;cellular metabolic process;2.00690310806791e-59!GO:0044238;primary metabolic process;8.32675152925763e-59!GO:0043233;organelle lumen;3.09990810901789e-57!GO:0031974;membrane-enclosed lumen;3.09990810901789e-57!GO:0031090;organelle membrane;3.4152291744159e-52!GO:0044428;nuclear part;2.72111766522928e-51!GO:0043170;macromolecule metabolic process;1.45110660242775e-48!GO:0003723;RNA binding;5.51251669785253e-47!GO:0005840;ribosome;2.26902813959955e-46!GO:0009058;biosynthetic process;1.31281816928159e-45!GO:0019538;protein metabolic process;4.96732753340353e-45!GO:0043234;protein complex;1.3156283622736e-43!GO:0044429;mitochondrial part;1.5221284123513e-43!GO:0006412;translation;8.38115630298719e-43!GO:0003735;structural constituent of ribosome;1.50175930183171e-41!GO:0016043;cellular component organization and biogenesis;5.67605742474353e-41!GO:0044260;cellular macromolecule metabolic process;1.97151446730352e-39!GO:0044249;cellular biosynthetic process;8.87894520566768e-39!GO:0044267;cellular protein metabolic process;1.14067902079601e-38!GO:0009059;macromolecule biosynthetic process;3.41677659724971e-37!GO:0006396;RNA processing;2.01108753995623e-36!GO:0031967;organelle envelope;2.65257538246504e-36!GO:0031975;envelope;5.64415177724687e-36!GO:0033279;ribosomal subunit;1.3452772290886e-35!GO:0005829;cytosol;2.5479986404977e-35!GO:0043228;non-membrane-bound organelle;4.30030317225446e-35!GO:0043232;intracellular non-membrane-bound organelle;4.30030317225446e-35!GO:0005634;nucleus;1.34700992521378e-34!GO:0033036;macromolecule localization;5.15269447603089e-33!GO:0015031;protein transport;1.24391014726437e-32!GO:0008104;protein localization;3.33665994308564e-31!GO:0045184;establishment of protein localization;4.28456831225298e-31!GO:0031981;nuclear lumen;1.20205007742699e-30!GO:0065003;macromolecular complex assembly;1.78537996158239e-29!GO:0006996;organelle organization and biogenesis;1.95908281284916e-29!GO:0005740;mitochondrial envelope;2.06116314119329e-29!GO:0031966;mitochondrial membrane;1.39534584475789e-27!GO:0019866;organelle inner membrane;3.55040630272355e-27!GO:0016071;mRNA metabolic process;3.84706639140452e-27!GO:0046907;intracellular transport;4.51718557867604e-27!GO:0022607;cellular component assembly;3.24774855448608e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.64497187624551e-26!GO:0005743;mitochondrial inner membrane;1.03568416254788e-25!GO:0008380;RNA splicing;3.05988533012154e-25!GO:0006397;mRNA processing;5.90297582041749e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.0797822099283e-23!GO:0006259;DNA metabolic process;9.41154269567338e-23!GO:0005783;endoplasmic reticulum;3.15124300943544e-22!GO:0006886;intracellular protein transport;8.77034104470663e-22!GO:0044445;cytosolic part;5.17222486644642e-21!GO:0044455;mitochondrial membrane part;5.67275288711917e-21!GO:0012505;endomembrane system;5.77800587796565e-21!GO:0043283;biopolymer metabolic process;6.82268014135045e-21!GO:0006119;oxidative phosphorylation;1.37756478610761e-20!GO:0007049;cell cycle;8.8881037845368e-20!GO:0005681;spliceosome;5.83633965694246e-19!GO:0015934;large ribosomal subunit;6.24588473643639e-19!GO:0044432;endoplasmic reticulum part;8.96028834379495e-19!GO:0051649;establishment of cellular localization;3.69745492427874e-18!GO:0048770;pigment granule;6.94320886513269e-18!GO:0042470;melanosome;6.94320886513269e-18!GO:0051641;cellular localization;7.35141557252882e-18!GO:0016462;pyrophosphatase activity;9.72249465745576e-18!GO:0015935;small ribosomal subunit;1.02326743428846e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.06266244568508e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.09348832553954e-17!GO:0031980;mitochondrial lumen;1.8371715945827e-17!GO:0005759;mitochondrial matrix;1.8371715945827e-17!GO:0006457;protein folding;3.98439838327439e-17!GO:0005654;nucleoplasm;7.06698239761302e-17!GO:0022402;cell cycle process;1.20301513969571e-16!GO:0016874;ligase activity;2.17959500995973e-16!GO:0017111;nucleoside-triphosphatase activity;2.98954933482783e-16!GO:0005746;mitochondrial respiratory chain;3.75736001156198e-16!GO:0000278;mitotic cell cycle;6.89857490955938e-16!GO:0051186;cofactor metabolic process;1.14568080164796e-15!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.09926160104802e-15!GO:0005730;nucleolus;9.88659784918297e-15!GO:0005794;Golgi apparatus;1.72824699203997e-14!GO:0010467;gene expression;1.87120180649222e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.47021354365027e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.81084064425916e-14!GO:0044451;nucleoplasm part;6.27895228128771e-14!GO:0022618;protein-RNA complex assembly;7.67055396264017e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.67055396264017e-14!GO:0003954;NADH dehydrogenase activity;7.67055396264017e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.67055396264017e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.77238761185521e-14!GO:0005761;mitochondrial ribosome;1.35020835216904e-13!GO:0000313;organellar ribosome;1.35020835216904e-13!GO:0000166;nucleotide binding;1.40942987689504e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.67384261185075e-13!GO:0005789;endoplasmic reticulum membrane;3.25323497288197e-13!GO:0006512;ubiquitin cycle;4.05277319302179e-13!GO:0043285;biopolymer catabolic process;6.91243335305674e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.58323114708414e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.13808751942061e-12!GO:0006974;response to DNA damage stimulus;1.52538397884787e-12!GO:0006732;coenzyme metabolic process;2.58217909030116e-12!GO:0030964;NADH dehydrogenase complex (quinone);5.01984731713491e-12!GO:0045271;respiratory chain complex I;5.01984731713491e-12!GO:0005747;mitochondrial respiratory chain complex I;5.01984731713491e-12!GO:0006605;protein targeting;7.00761804450842e-12!GO:0009057;macromolecule catabolic process;1.35814586237327e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.35814586237327e-11!GO:0042773;ATP synthesis coupled electron transport;1.35814586237327e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.66054547635246e-11!GO:0000074;regulation of progression through cell cycle;2.18153399073409e-11!GO:0051726;regulation of cell cycle;2.33214851368264e-11!GO:0008134;transcription factor binding;2.84932815936024e-11!GO:0007067;mitosis;3.74101085117613e-11!GO:0043412;biopolymer modification;3.81909091619919e-11!GO:0022403;cell cycle phase;3.9478396295546e-11!GO:0005694;chromosome;4.08470229061202e-11!GO:0044265;cellular macromolecule catabolic process;4.11532141704606e-11!GO:0000087;M phase of mitotic cell cycle;4.4652424677662e-11!GO:0044248;cellular catabolic process;5.48875942095055e-11!GO:0030163;protein catabolic process;5.53601637252705e-11!GO:0008135;translation factor activity, nucleic acid binding;6.63617150416677e-11!GO:0051082;unfolded protein binding;8.0210241308607e-11!GO:0009055;electron carrier activity;9.82318132137517e-11!GO:0048193;Golgi vesicle transport;1.21570894663449e-10!GO:0009259;ribonucleotide metabolic process;1.25129028342099e-10!GO:0044427;chromosomal part;1.31221238685023e-10!GO:0016192;vesicle-mediated transport;1.36523662122211e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.70605388185757e-10!GO:0042254;ribosome biogenesis and assembly;1.98656848723912e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.25923638451755e-10!GO:0019941;modification-dependent protein catabolic process;2.63807438484039e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.63807438484039e-10!GO:0009150;purine ribonucleotide metabolic process;2.79230981783455e-10!GO:0044257;cellular protein catabolic process;2.93246057470972e-10!GO:0032553;ribonucleotide binding;3.64579430709268e-10!GO:0032555;purine ribonucleotide binding;3.64579430709268e-10!GO:0009719;response to endogenous stimulus;4.09333869133504e-10!GO:0006464;protein modification process;4.675704905614e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.675704905614e-10!GO:0000375;RNA splicing, via transesterification reactions;4.675704905614e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.675704905614e-10!GO:0006163;purine nucleotide metabolic process;5.10389333341555e-10!GO:0051276;chromosome organization and biogenesis;5.49227570342069e-10!GO:0042623;ATPase activity, coupled;5.9266322331064e-10!GO:0017076;purine nucleotide binding;7.23819918578278e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.45433999866573e-10!GO:0009260;ribonucleotide biosynthetic process;7.65200901257225e-10!GO:0016887;ATPase activity;7.65200901257225e-10!GO:0006281;DNA repair;8.11267827882708e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.05251603226066e-09!GO:0006333;chromatin assembly or disassembly;1.16939497855396e-09!GO:0065004;protein-DNA complex assembly;1.42641208771978e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.42641208771978e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.42641208771978e-09!GO:0006164;purine nucleotide biosynthetic process;1.52337185737033e-09!GO:0006446;regulation of translational initiation;1.70974680237591e-09!GO:0009141;nucleoside triphosphate metabolic process;1.73106562327112e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.91011316953275e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.95340053174896e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.95340053174896e-09!GO:0006399;tRNA metabolic process;2.36023320822895e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.72120686795299e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.72120686795299e-09!GO:0016491;oxidoreductase activity;3.56310631817489e-09!GO:0005524;ATP binding;3.60825553024234e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.9416166886629e-09!GO:0005793;ER-Golgi intermediate compartment;4.42174391449844e-09!GO:0006413;translational initiation;5.57224881388742e-09!GO:0006323;DNA packaging;5.91889815999528e-09!GO:0000785;chromatin;6.04692383973521e-09!GO:0032559;adenyl ribonucleotide binding;6.14719061795266e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.88483555657414e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.88212348823195e-09!GO:0006334;nucleosome assembly;9.65151443493237e-09!GO:0012501;programmed cell death;1.1879242254068e-08!GO:0006915;apoptosis;1.23758455335403e-08!GO:0006461;protein complex assembly;1.52091899312741e-08!GO:0030554;adenyl nucleotide binding;1.72249359921451e-08!GO:0031497;chromatin assembly;2.43612357613106e-08!GO:0051301;cell division;2.51634928831071e-08!GO:0005635;nuclear envelope;2.8741020304753e-08!GO:0015986;ATP synthesis coupled proton transport;2.8741020304753e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.8741020304753e-08!GO:0003743;translation initiation factor activity;2.89460187587043e-08!GO:0008639;small protein conjugating enzyme activity;3.04720729705023e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.63099296093871e-08!GO:0006260;DNA replication;4.74783695120732e-08!GO:0051188;cofactor biosynthetic process;4.86371732342274e-08!GO:0005788;endoplasmic reticulum lumen;6.00568573923528e-08!GO:0019787;small conjugating protein ligase activity;6.19323477007056e-08!GO:0004842;ubiquitin-protein ligase activity;6.92470893642252e-08!GO:0008565;protein transporter activity;8.18608065659041e-08!GO:0008219;cell death;1.00476085001675e-07!GO:0016265;death;1.00476085001675e-07!GO:0009117;nucleotide metabolic process;1.10321771065125e-07!GO:0000279;M phase;1.13636813532066e-07!GO:0031965;nuclear membrane;1.31237200909441e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.46838279261076e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.46838279261076e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.46838279261076e-07!GO:0019829;cation-transporting ATPase activity;1.52170876613173e-07!GO:0005773;vacuole;1.66073853837968e-07!GO:0046034;ATP metabolic process;1.66985284507521e-07!GO:0016604;nuclear body;2.24700404802827e-07!GO:0006754;ATP biosynthetic process;2.26929461115079e-07!GO:0006753;nucleoside phosphate metabolic process;2.26929461115079e-07!GO:0043687;post-translational protein modification;2.47680277017216e-07!GO:0003712;transcription cofactor activity;2.6613437649512e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.6801662359618e-07!GO:0009056;catabolic process;2.85694238544258e-07!GO:0048475;coated membrane;3.04659642072822e-07!GO:0030117;membrane coat;3.04659642072822e-07!GO:0043038;amino acid activation;3.13468613248493e-07!GO:0006418;tRNA aminoacylation for protein translation;3.13468613248493e-07!GO:0043039;tRNA aminoacylation;3.13468613248493e-07!GO:0006364;rRNA processing;3.54104091123673e-07!GO:0031988;membrane-bound vesicle;3.59730024206351e-07!GO:0005768;endosome;4.06384312204384e-07!GO:0007005;mitochondrion organization and biogenesis;4.18565616752509e-07!GO:0016072;rRNA metabolic process;4.30106965539503e-07!GO:0044453;nuclear membrane part;4.96096325757077e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.18080900129634e-07!GO:0009060;aerobic respiration;7.30643922778855e-07!GO:0016881;acid-amino acid ligase activity;7.96333725021283e-07!GO:0030120;vesicle coat;8.34083298212325e-07!GO:0030662;coated vesicle membrane;8.34083298212325e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.05707497770401e-06!GO:0044431;Golgi apparatus part;1.08622816252269e-06!GO:0031982;vesicle;1.10909580427821e-06!GO:0008654;phospholipid biosynthetic process;1.22834308681773e-06!GO:0006091;generation of precursor metabolites and energy;1.24379836097986e-06!GO:0016740;transferase activity;1.36792564742425e-06!GO:0031410;cytoplasmic vesicle;1.44571956433902e-06!GO:0006913;nucleocytoplasmic transport;1.55796913329519e-06!GO:0015630;microtubule cytoskeleton;1.78235778100201e-06!GO:0017038;protein import;2.03730583635197e-06!GO:0051329;interphase of mitotic cell cycle;2.60318244067612e-06!GO:0051169;nuclear transport;2.63148669412629e-06!GO:0016607;nuclear speck;2.64976418798934e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.98444300861142e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.44223256302751e-06!GO:0045333;cellular respiration;3.60577405040659e-06!GO:0009108;coenzyme biosynthetic process;4.19945358033186e-06!GO:0045259;proton-transporting ATP synthase complex;4.19945358033186e-06!GO:0006752;group transfer coenzyme metabolic process;4.27377218314204e-06!GO:0051325;interphase;4.47939855840975e-06!GO:0000323;lytic vacuole;5.26513386687478e-06!GO:0005764;lysosome;5.26513386687478e-06!GO:0051246;regulation of protein metabolic process;7.30331871776663e-06!GO:0032446;protein modification by small protein conjugation;9.39619094391175e-06!GO:0045786;negative regulation of progression through cell cycle;1.07619250196065e-05!GO:0065002;intracellular protein transport across a membrane;1.23317827225933e-05!GO:0005762;mitochondrial large ribosomal subunit;1.30816339453173e-05!GO:0000315;organellar large ribosomal subunit;1.30816339453173e-05!GO:0046474;glycerophospholipid biosynthetic process;1.36730422965286e-05!GO:0031252;leading edge;1.4472756699355e-05!GO:0016787;hydrolase activity;1.45211419659049e-05!GO:0048523;negative regulation of cellular process;1.52086709013712e-05!GO:0016567;protein ubiquitination;1.52683898250642e-05!GO:0000786;nucleosome;1.95869681550877e-05!GO:0044440;endosomal part;1.95869681550877e-05!GO:0010008;endosome membrane;1.95869681550877e-05!GO:0006099;tricarboxylic acid cycle;2.00678555910219e-05!GO:0046356;acetyl-CoA catabolic process;2.00678555910219e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.18758279337202e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.26057811840261e-05!GO:0003924;GTPase activity;2.38074567563071e-05!GO:0051187;cofactor catabolic process;2.39242155452189e-05!GO:0006084;acetyl-CoA metabolic process;2.8699824458692e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.07819747967878e-05!GO:0009109;coenzyme catabolic process;3.31326726864691e-05!GO:0000139;Golgi membrane;3.65362136026612e-05!GO:0065009;regulation of a molecular function;3.72546256153561e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.8729649388555e-05!GO:0005643;nuclear pore;4.09054118083985e-05!GO:0008026;ATP-dependent helicase activity;4.20223515607307e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.4203993547232e-05!GO:0006082;organic acid metabolic process;4.47155393578799e-05!GO:0016853;isomerase activity;4.7379574149021e-05!GO:0003697;single-stranded DNA binding;5.13357436771954e-05!GO:0006916;anti-apoptosis;5.36853415045645e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;5.47242242822813e-05!GO:0005770;late endosome;5.59854662202027e-05!GO:0019752;carboxylic acid metabolic process;5.60375522021124e-05!GO:0043566;structure-specific DNA binding;6.65765029435484e-05!GO:0042981;regulation of apoptosis;8.00994039623155e-05!GO:0004386;helicase activity;9.05397571493921e-05!GO:0043067;regulation of programmed cell death;0.000100516774680195!GO:0008610;lipid biosynthetic process;0.000102672883645571!GO:0045454;cell redox homeostasis;0.000108173497711889!GO:0030867;rough endoplasmic reticulum membrane;0.000109488261255781!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000110734697165063!GO:0016126;sterol biosynthetic process;0.000114610881441953!GO:0009165;nucleotide biosynthetic process;0.000116405937357127!GO:0046930;pore complex;0.000119933946463027!GO:0043623;cellular protein complex assembly;0.000122086571741484!GO:0000151;ubiquitin ligase complex;0.000123369501165726!GO:0005905;coated pit;0.000132558614247805!GO:0016779;nucleotidyltransferase activity;0.000133320712780286!GO:0048519;negative regulation of biological process;0.000140152659170621!GO:0051789;response to protein stimulus;0.000140152659170621!GO:0006986;response to unfolded protein;0.000140152659170621!GO:0004298;threonine endopeptidase activity;0.000146644145993283!GO:0016859;cis-trans isomerase activity;0.000156520486438503!GO:0043069;negative regulation of programmed cell death;0.000158234783849106!GO:0046489;phosphoinositide biosynthetic process;0.000185420253160293!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000187724930393906!GO:0043066;negative regulation of apoptosis;0.000195377867154238!GO:0005819;spindle;0.000195757834567864!GO:0033116;ER-Golgi intermediate compartment membrane;0.000212860259168936!GO:0005798;Golgi-associated vesicle;0.000215395380229695!GO:0006613;cotranslational protein targeting to membrane;0.000223902049621025!GO:0019899;enzyme binding;0.000224150071010164!GO:0003713;transcription coactivator activity;0.000229359075691911!GO:0006366;transcription from RNA polymerase II promoter;0.000246943435229686!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000248187833424625!GO:0015399;primary active transmembrane transporter activity;0.000248187833424625!GO:0042802;identical protein binding;0.000282706363394005!GO:0015980;energy derivation by oxidation of organic compounds;0.000288254717118491!GO:0006979;response to oxidative stress;0.000314472898335584!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000323988655427555!GO:0003676;nucleic acid binding;0.000324888827529203!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000334379780369169!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000344405848504408!GO:0007010;cytoskeleton organization and biogenesis;0.000345489006015896!GO:0016563;transcription activator activity;0.000345894261825745!GO:0031968;organelle outer membrane;0.000364575699964427!GO:0019867;outer membrane;0.000368511056219048!GO:0003724;RNA helicase activity;0.000400789862180637!GO:0000245;spliceosome assembly;0.000414116752641072!GO:0016049;cell growth;0.00041487931411627!GO:0005791;rough endoplasmic reticulum;0.000482386114513993!GO:0008361;regulation of cell size;0.000497062153909221!GO:0001558;regulation of cell growth;0.000500815996610902!GO:0000314;organellar small ribosomal subunit;0.000500815996610902!GO:0005763;mitochondrial small ribosomal subunit;0.000500815996610902!GO:0006650;glycerophospholipid metabolic process;0.000504212331615515!GO:0043021;ribonucleoprotein binding;0.000518342431250625!GO:0016568;chromatin modification;0.00052346660542164!GO:0006818;hydrogen transport;0.000537416895787225!GO:0008250;oligosaccharyl transferase complex;0.000550474251117382!GO:0005813;centrosome;0.000628866178619001!GO:0019843;rRNA binding;0.000633854321294842!GO:0006793;phosphorus metabolic process;0.000651738940405855!GO:0006796;phosphate metabolic process;0.000651738940405855!GO:0015992;proton transport;0.000693951415241435!GO:0046467;membrane lipid biosynthetic process;0.000730010066662883!GO:0003899;DNA-directed RNA polymerase activity;0.000806975472323509!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000876078732408751!GO:0005048;signal sequence binding;0.000900791437987241!GO:0051920;peroxiredoxin activity;0.000903886619391894!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000921402974310669!GO:0030659;cytoplasmic vesicle membrane;0.00092753141455309!GO:0005667;transcription factor complex;0.00093026763949719!GO:0030118;clathrin coat;0.000936146857537945!GO:0004576;oligosaccharyl transferase activity;0.000960025514542691!GO:0051170;nuclear import;0.000977368969640878!GO:0003714;transcription corepressor activity;0.00101082098431324!GO:0043492;ATPase activity, coupled to movement of substances;0.00101793788564617!GO:0030176;integral to endoplasmic reticulum membrane;0.00102556400984051!GO:0008092;cytoskeletal protein binding;0.00108621950334436!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00115569641847549!GO:0005741;mitochondrial outer membrane;0.00115687389521355!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00117636326640318!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00117774845268362!GO:0030133;transport vesicle;0.00131685706830016!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00133376079967966!GO:0030132;clathrin coat of coated pit;0.00136472912589185!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00137404306316993!GO:0006695;cholesterol biosynthetic process;0.00138409249640663!GO:0031324;negative regulation of cellular metabolic process;0.00141013044249339!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00142795161890689!GO:0003684;damaged DNA binding;0.00144773307655347!GO:0006606;protein import into nucleus;0.0014764982018424!GO:0051427;hormone receptor binding;0.00150591194950081!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00150591194950081!GO:0005525;GTP binding;0.0015071971358004!GO:0043284;biopolymer biosynthetic process;0.00152492217422543!GO:0016310;phosphorylation;0.00153620726828708!GO:0050790;regulation of catalytic activity;0.00154960383484448!GO:0006506;GPI anchor biosynthetic process;0.00155223842986563!GO:0043681;protein import into mitochondrion;0.00155604439095639!GO:0007051;spindle organization and biogenesis;0.00163902269088209!GO:0051252;regulation of RNA metabolic process;0.00164206536903341!GO:0050657;nucleic acid transport;0.00166334069436269!GO:0051236;establishment of RNA localization;0.00166334069436269!GO:0050658;RNA transport;0.00166334069436269!GO:0006261;DNA-dependent DNA replication;0.00172558912615843!GO:0044262;cellular carbohydrate metabolic process;0.00174639966804043!GO:0005815;microtubule organizing center;0.00175885532802054!GO:0005774;vacuolar membrane;0.00176877620010612!GO:0008033;tRNA processing;0.00184068176846309!GO:0007006;mitochondrial membrane organization and biogenesis;0.00184641761597745!GO:0006612;protein targeting to membrane;0.00188468060835864!GO:0006414;translational elongation;0.00194221838515517!GO:0000075;cell cycle checkpoint;0.00194221838515517!GO:0007040;lysosome organization and biogenesis;0.00194343878498344!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00195111219841245!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00195111219841245!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00195111219841245!GO:0007088;regulation of mitosis;0.00198718216196781!GO:0009892;negative regulation of metabolic process;0.00205355488793111!GO:0006403;RNA localization;0.00207277239082904!GO:0005885;Arp2/3 protein complex;0.00209739966624494!GO:0008186;RNA-dependent ATPase activity;0.00213117147111846!GO:0030119;AP-type membrane coat adaptor complex;0.00216259695599304!GO:0018196;peptidyl-asparagine modification;0.00234803922483142!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00234803922483142!GO:0007050;cell cycle arrest;0.00247011037368351!GO:0005769;early endosome;0.00262063702623256!GO:0035257;nuclear hormone receptor binding;0.00274079630784719!GO:0006520;amino acid metabolic process;0.00287469965236407!GO:0030384;phosphoinositide metabolic process;0.00296593169529413!GO:0043488;regulation of mRNA stability;0.00300845728674401!GO:0043487;regulation of RNA stability;0.00300845728674401!GO:0006497;protein amino acid lipidation;0.00300845728674401!GO:0030663;COPI coated vesicle membrane;0.00305867366790987!GO:0030126;COPI vesicle coat;0.00305867366790987!GO:0005874;microtubule;0.00312383855506468!GO:0030036;actin cytoskeleton organization and biogenesis;0.00317455819490658!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00318596895586616!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00322573502840331!GO:0030131;clathrin adaptor complex;0.00325730072920617!GO:0042158;lipoprotein biosynthetic process;0.00352439716949468!GO:0006839;mitochondrial transport;0.00352621970601868!GO:0046870;cadmium ion binding;0.00355153743035073!GO:0016044;membrane organization and biogenesis;0.00358240259226258!GO:0044433;cytoplasmic vesicle part;0.00359655666896733!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00363088543891863!GO:0046483;heterocycle metabolic process;0.00376754654930862!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00381449704425034!GO:0044437;vacuolar part;0.00397627189165014!GO:0016564;transcription repressor activity;0.00402502878151492!GO:0048487;beta-tubulin binding;0.00408772763762017!GO:0006289;nucleotide-excision repair;0.00420975959584288!GO:0000049;tRNA binding;0.00432610829713969!GO:0048471;perinuclear region of cytoplasm;0.00441113154849759!GO:0048037;cofactor binding;0.00445702837592927!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00469048351010863!GO:0030027;lamellipodium;0.00481455201205766!GO:0007033;vacuole organization and biogenesis;0.00481455201205766!GO:0004004;ATP-dependent RNA helicase activity;0.00485332780968375!GO:0045936;negative regulation of phosphate metabolic process;0.00485753934023481!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00487477869921221!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00487477869921221!GO:0006505;GPI anchor metabolic process;0.00489797335359249!GO:0051101;regulation of DNA binding;0.00499593295742854!GO:0030137;COPI-coated vesicle;0.00530286075434193!GO:0001726;ruffle;0.00582490834624991!GO:0016125;sterol metabolic process;0.00623319107549871!GO:0003682;chromatin binding;0.00643013535357547!GO:0040008;regulation of growth;0.00646663135549616!GO:0022890;inorganic cation transmembrane transporter activity;0.00646663135549616!GO:0015631;tubulin binding;0.00683477233168802!GO:0050662;coenzyme binding;0.00685934936463191!GO:0048522;positive regulation of cellular process;0.00685934936463191!GO:0008094;DNA-dependent ATPase activity;0.00693360956039443!GO:0051098;regulation of binding;0.0069486655121172!GO:0017166;vinculin binding;0.00701414733699254!GO:0016408;C-acyltransferase activity;0.0071973757182861!GO:0006807;nitrogen compound metabolic process;0.00749835736803721!GO:0005869;dynactin complex;0.00751950608122005!GO:0016070;RNA metabolic process;0.0076340456251534!GO:0030029;actin filament-based process;0.0076340456251534!GO:0000775;chromosome, pericentric region;0.00781118831575083!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00782865813698997!GO:0031902;late endosome membrane;0.00790334496998321!GO:0006118;electron transport;0.0086353429867533!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00877099720842299!GO:0015002;heme-copper terminal oxidase activity;0.00877099720842299!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00877099720842299!GO:0004129;cytochrome-c oxidase activity;0.00877099720842299!GO:0032561;guanyl ribonucleotide binding;0.00892625795444835!GO:0019001;guanyl nucleotide binding;0.00892625795444835!GO:0012506;vesicle membrane;0.00916686394152279!GO:0030658;transport vesicle membrane;0.00928960045820616!GO:0007243;protein kinase cascade;0.00957285554863362!GO:0004177;aminopeptidase activity;0.00979682419556999!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00986608397191542!GO:0000082;G1/S transition of mitotic cell cycle;0.00986608397191542!GO:0006626;protein targeting to mitochondrion;0.0100544346345274!GO:0051128;regulation of cellular component organization and biogenesis;0.0108477011188364!GO:0030145;manganese ion binding;0.0111544110875815!GO:0005684;U2-dependent spliceosome;0.0111847410025626!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0112114267477075!GO:0006383;transcription from RNA polymerase III promoter;0.0114654101405022!GO:0051287;NAD binding;0.0115073766677392!GO:0005856;cytoskeleton;0.0122967812078369!GO:0008637;apoptotic mitochondrial changes;0.0125857087727526!GO:0008632;apoptotic program;0.0126130540858546!GO:0006778;porphyrin metabolic process;0.0126130540858546!GO:0033013;tetrapyrrole metabolic process;0.0126130540858546!GO:0006509;membrane protein ectodomain proteolysis;0.0127201082561496!GO:0033619;membrane protein proteolysis;0.0127201082561496!GO:0042326;negative regulation of phosphorylation;0.0127395847106118!GO:0008022;protein C-terminus binding;0.0129395577679356!GO:0006595;polyamine metabolic process;0.0132692383488574!GO:0003746;translation elongation factor activity;0.0137904801677063!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0143295499073781!GO:0044452;nucleolar part;0.0147220325159192!GO:0003690;double-stranded DNA binding;0.0151375493678081!GO:0005765;lysosomal membrane;0.0155447690168262!GO:0051168;nuclear export;0.015621362522277!GO:0051028;mRNA transport;0.0157798633144448!GO:0006644;phospholipid metabolic process;0.0157812793296654!GO:0016363;nuclear matrix;0.0158751560084072!GO:0030125;clathrin vesicle coat;0.0159615932942596!GO:0030665;clathrin coated vesicle membrane;0.0159615932942596!GO:0006284;base-excision repair;0.0162118878707144!GO:0031072;heat shock protein binding;0.0167679802885621!GO:0009308;amine metabolic process;0.0169494828828916!GO:0008180;signalosome;0.0173547425149911!GO:0006643;membrane lipid metabolic process;0.0173895040990394!GO:0030880;RNA polymerase complex;0.0176166468365856!GO:0043154;negative regulation of caspase activity;0.0182876418115089!GO:0046426;negative regulation of JAK-STAT cascade;0.0182876418115089!GO:0048500;signal recognition particle;0.0183876002499268!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0188742502636954!GO:0000030;mannosyltransferase activity;0.0191381346474526!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0192372560117752!GO:0010257;NADH dehydrogenase complex assembly;0.0192372560117752!GO:0033108;mitochondrial respiratory chain complex assembly;0.0192372560117752!GO:0006519;amino acid and derivative metabolic process;0.019318504713913!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0193898340836769!GO:0030660;Golgi-associated vesicle membrane;0.0201312512785571!GO:0016741;transferase activity, transferring one-carbon groups;0.0201346354763097!GO:0008168;methyltransferase activity;0.0201555276255065!GO:0003711;transcription elongation regulator activity;0.0203285166551254!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0206439329301196!GO:0006779;porphyrin biosynthetic process;0.0207766893675738!GO:0033014;tetrapyrrole biosynthetic process;0.0207766893675738!GO:0009967;positive regulation of signal transduction;0.0212004828944857!GO:0001836;release of cytochrome c from mitochondria;0.0212004828944857!GO:0031301;integral to organelle membrane;0.0215016788223162!GO:0035035;histone acetyltransferase binding;0.0215016788223162!GO:0006740;NADPH regeneration;0.022713520954134!GO:0006098;pentose-phosphate shunt;0.022713520954134!GO:0006767;water-soluble vitamin metabolic process;0.0228844061952593!GO:0031529;ruffle organization and biogenesis;0.0230506579947023!GO:0008286;insulin receptor signaling pathway;0.0243095452934751!GO:0005581;collagen;0.0243392429179884!GO:0001527;microfibril;0.0244756192696882!GO:0003729;mRNA binding;0.024520205157712!GO:0006352;transcription initiation;0.0246782908254191!GO:0000209;protein polyubiquitination;0.0247359474480528!GO:0046039;GTP metabolic process;0.0249414652718881!GO:0006183;GTP biosynthetic process;0.0249414652718881!GO:0009303;rRNA transcription;0.0251527694709689!GO:0051338;regulation of transferase activity;0.0256389553181701!GO:0006066;alcohol metabolic process;0.0257334661407769!GO:0031272;regulation of pseudopodium formation;0.0257334661407769!GO:0031269;pseudopodium formation;0.0257334661407769!GO:0031344;regulation of cell projection organization and biogenesis;0.0257334661407769!GO:0031268;pseudopodium organization and biogenesis;0.0257334661407769!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0257334661407769!GO:0031274;positive regulation of pseudopodium formation;0.0257334661407769!GO:0008652;amino acid biosynthetic process;0.0260217400864707!GO:0005637;nuclear inner membrane;0.0260217400864707!GO:0005862;muscle thin filament tropomyosin;0.0260963463386195!GO:0006458;'de novo' protein folding;0.0261926459156835!GO:0051084;'de novo' posttranslational protein folding;0.0261926459156835!GO:0030503;regulation of cell redox homeostasis;0.0262597695764636!GO:0008139;nuclear localization sequence binding;0.0270340721101224!GO:0030057;desmosome;0.0270340721101224!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0270340721101224!GO:0044255;cellular lipid metabolic process;0.0270805008326719!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0282476698766292!GO:0005832;chaperonin-containing T-complex;0.0282552067048658!GO:0007265;Ras protein signal transduction;0.029566225016359!GO:0051540;metal cluster binding;0.0297414369159794!GO:0051536;iron-sulfur cluster binding;0.0297414369159794!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0297414369159794!GO:0000059;protein import into nucleus, docking;0.0299761370221809!GO:0051539;4 iron, 4 sulfur cluster binding;0.0299827044151933!GO:0006354;RNA elongation;0.0302872731303096!GO:0042168;heme metabolic process;0.030694541581569!GO:0030833;regulation of actin filament polymerization;0.0321030982829686!GO:0016407;acetyltransferase activity;0.0321030982829686!GO:0003923;GPI-anchor transamidase activity;0.0321133537537178!GO:0016255;attachment of GPI anchor to protein;0.0321133537537178!GO:0042765;GPI-anchor transamidase complex;0.0321133537537178!GO:0007052;mitotic spindle organization and biogenesis;0.0325132990796249!GO:0006891;intra-Golgi vesicle-mediated transport;0.0329454310299237!GO:0044438;microbody part;0.0329454310299237!GO:0044439;peroxisomal part;0.0329454310299237!GO:0016197;endosome transport;0.033576702655268!GO:0032508;DNA duplex unwinding;0.0340390089710716!GO:0032392;DNA geometric change;0.0340390089710716!GO:0032507;maintenance of cellular protein localization;0.0343437197003914!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0348835633980472!GO:0031418;L-ascorbic acid binding;0.0349099907885842!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0349397095208931!GO:0000428;DNA-directed RNA polymerase complex;0.0349397095208931!GO:0009116;nucleoside metabolic process;0.0356981671631072!GO:0006268;DNA unwinding during replication;0.0367073157500515!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0373841138253092!GO:0000086;G2/M transition of mitotic cell cycle;0.0374010951583625!GO:0051087;chaperone binding;0.0374948073360587!GO:0048518;positive regulation of biological process;0.0374948073360587!GO:0006302;double-strand break repair;0.0374948073360587!GO:0035258;steroid hormone receptor binding;0.0374948073360587!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0374948073360587!GO:0045047;protein targeting to ER;0.0374948073360587!GO:0005657;replication fork;0.0379295748056814!GO:0031903;microbody membrane;0.0381455376835221!GO:0005778;peroxisomal membrane;0.0381455376835221!GO:0043022;ribosome binding;0.038556143826199!GO:0030911;TPR domain binding;0.0387523513372127!GO:0006402;mRNA catabolic process;0.0387816487073737!GO:0040029;regulation of gene expression, epigenetic;0.0389078182208558!GO:0007093;mitotic cell cycle checkpoint;0.0390857085322813!GO:0030127;COPII vesicle coat;0.0391427700301833!GO:0012507;ER to Golgi transport vesicle membrane;0.0391427700301833!GO:0009147;pyrimidine nucleoside triphosphate metabolic process;0.0403718130024607!GO:0006338;chromatin remodeling;0.0404778659359582!GO:0045806;negative regulation of endocytosis;0.0405624735614608!GO:0008312;7S RNA binding;0.0405624735614608!GO:0000096;sulfur amino acid metabolic process;0.0407409756774697!GO:0003678;DNA helicase activity;0.0408375652608092!GO:0006376;mRNA splice site selection;0.0409661718450395!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0409661718450395!GO:0031124;mRNA 3'-end processing;0.0410686675716274!GO:0016272;prefoldin complex;0.0412374030159635!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0413774853439134!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0413774853439134!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0413774853439134!GO:0004860;protein kinase inhibitor activity;0.0419624590321586!GO:0008629;induction of apoptosis by intracellular signals;0.0430963582701291!GO:0033673;negative regulation of kinase activity;0.0437035639020479!GO:0006469;negative regulation of protein kinase activity;0.0437035639020479!GO:0031543;peptidyl-proline dioxygenase activity;0.0446583495286137!GO:0006220;pyrimidine nucleotide metabolic process;0.0446583495286137!GO:0030031;cell projection biogenesis;0.0446583495286137!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0448161989038578!GO:0051348;negative regulation of transferase activity;0.0450185590130792!GO:0006914;autophagy;0.0451177499753171!GO:0043549;regulation of kinase activity;0.0451834299711725!GO:0005784;translocon complex;0.0459804287312297!GO:0050811;GABA receptor binding;0.0460195488156604!GO:0007264;small GTPase mediated signal transduction;0.0461736217836363!GO:0005092;GDP-dissociation inhibitor activity;0.0464415841864519!GO:0030521;androgen receptor signaling pathway;0.0464415841864519!GO:0008154;actin polymerization and/or depolymerization;0.0464978726452172!GO:0030134;ER to Golgi transport vesicle;0.0466265949833068!GO:0006749;glutathione metabolic process;0.0468630112149297!GO:0030041;actin filament polymerization;0.0470852123035992!GO:0030128;clathrin coat of endocytic vesicle;0.0475446033329798!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0475446033329798!GO:0030122;AP-2 adaptor complex;0.0475446033329798!GO:0048468;cell development;0.0481559633738214!GO:0009119;ribonucleoside metabolic process;0.0485906085406173!GO:0006783;heme biosynthetic process;0.0489226701983272!GO:0006611;protein export from nucleus;0.0493527370590514!GO:0051085;chaperone cofactor-dependent protein folding;0.0493923814329238!GO:0008426;protein kinase C inhibitor activity;0.0494060276386356!GO:0006401;RNA catabolic process;0.0497936691897889!GO:0008538;proteasome activator activity;0.049987806678411 | |||
|sample_id=11355 | |sample_id=11355 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=placenta | |sample_tissue=placenta | ||
|top_motifs=PPARG:2.19231858905;ZNF423:2.08624415923;HOX{A5,B5}:1.91220491355;TP53:1.8460401299;GLI1..3:1.6608590143;ZNF148:1.54841478896;NKX2-1,4:1.47104256114;TBX4,5:1.41906028904;ESR1:1.4001511294;TFAP4:1.35478213264;ZIC1..3:1.33521409985;TFAP2{A,C}:1.31286450483;GCM1,2:1.30814969512;PAX5:1.29203646827;TEAD1:1.25856321455;MTF1:1.1532216989;SNAI1..3:1.09763567676;NKX2-3_NKX2-5:1.06227467739;TBP:1.02341077143;HAND1,2:1.02226924237;EP300:0.92981315117;FOXM1:0.877218290959;ZNF384:0.819003743898;RXRA_VDR{dimer}:0.778079148165;AR:0.737100805775;XCPE1{core}:0.720464098415;HMX1:0.700062371001;SP1:0.697674297327;ZNF238:0.694707977744;POU3F1..4:0.66776888609;CDC5L:0.652377901199;ZEB1:0.643335168379;TFCP2:0.615581958772;RORA:0.590655007952;NR6A1:0.584928579259;SOX17:0.550585515448;EBF1:0.527681161464;HSF1,2:0.520952780595;STAT5{A,B}:0.508599084651;NR3C1:0.497609695005;TAL1_TCF{3,4,12}:0.447395785875;GZF1:0.446264886456;UFEwm:0.424666521436;ONECUT1,2:0.39252104889;HES1:0.372671119135;RXR{A,B,G}:0.368711148253;bHLH_family:0.338079213721;FOXL1:0.333794326125;FOS_FOS{B,L1}_JUN{B,D}:0.306530476911;HOXA9_MEIS1:0.300155674769;MAZ:0.299807643637;POU6F1:0.288190467925;LHX3,4:0.286423747167;POU2F1..3:0.280743070381;PBX1:0.273540752275;NR5A1,2:0.273075048292;HOX{A6,A7,B6,B7}:0.255517573512;TLX1..3_NFIC{dimer}:0.23776599106;SOX{8,9,10}:0.236951375698;RREB1:0.226858917452;FOXQ1:0.226387996719;KLF4:0.224818220033;MYOD1:0.223962018877;BACH2:0.214577195168;GTF2A1,2:0.201274550148;SMAD1..7,9:0.189089371643;IKZF1:0.187651788712;GFI1:0.162159607466;NKX2-2,8:0.144872424902;E2F1..5:0.142999205643;ALX4:0.105629555646;HIC1:0.0787373671663;HIF1A:0.0731676919902;NFIL3:0.0704837958508;HLF:0.0679600365203;FOSL2:0.0584905042271;EN1,2:0.0574136669345;NFY{A,B,C}:0.0529743055139;SPZ1:0.0477222398608;ZNF143:0.045532118663;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0342629866513;ZBTB6:0.0271884853067;YY1:-0.0275259463031;NFE2:-0.0370117328581;GTF2I:-0.0393641574213;LEF1_TCF7_TCF7L1,2:-0.0408405978338;MAFB:-0.0679534912985;DBP:-0.085684983764;ATF2:-0.10713577903;HNF1A:-0.116039368979;SOX5:-0.118352330161;HMGA1,2:-0.158192935044;GATA6:-0.161261924612;ADNP_IRX_SIX_ZHX:-0.174547075422;XBP1:-0.193849006973;HNF4A_NR2F1,2:-0.19452802129;CEBPA,B_DDIT3:-0.205036718791;FOX{F1,F2,J1}:-0.214702036028;NFE2L2:-0.226810625583;SRF:-0.23122042057;JUN:-0.233410203126;NHLH1,2:-0.237366794447;MYB:-0.258387519419;HOX{A4,D4}:-0.287422301474;TOPORS:-0.290544438216;ESRRA:-0.334336190116;OCT4_SOX2{dimer}:-0.354318172613;ARID5B:-0.361029364734;PAX8:-0.36886834395;NANOG:-0.372520859038;NFKB1_REL_RELA:-0.395941918365;RUNX1..3:-0.398448028805;PRRX1,2:-0.40132543765;ATF6:-0.402197402404;TEF:-0.411483116969;REST:-0.425733600529;NFE2L1:-0.426726358092;RFX1:-0.4318534621;PAX1,9:-0.434659952604;MYBL2:-0.451342468297;GFI1B:-0.464672986276;NKX3-2:-0.467119783792;MED-1{core}:-0.507776730862;MEF2{A,B,C,D}:-0.534205287719;EVI1:-0.535145424346;AIRE:-0.549430426595;ELK1,4_GABP{A,B1}:-0.561144061088;NR1H4:-0.583431766685;PATZ1:-0.586963311752;SREBF1,2:-0.62545947538;TFAP2B:-0.639695841409;POU1F1:-0.652701788952;FOXO1,3,4:-0.655553906199;LMO2:-0.674196085445;NANOG{mouse}:-0.676487383413;PITX1..3:-0.688829393875;ETS1,2:-0.707682153628;SOX2:-0.708388302746;SPIB:-0.713919282037;PAX2:-0.731864268404;CRX:-0.734700409212;ATF4:-0.772248678639;CUX2:-0.774915770662;NFATC1..3:-0.797957752851;MZF1:-0.826534901903;NRF1:-0.828714683541;MYFfamily:-0.838912388572;ELF1,2,4:-0.852436967285;STAT1,3:-0.855362805688;MTE{core}:-0.874144078037;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.880157690138;GATA4:-0.900401569175;VSX1,2:-0.935908531864;RBPJ:-0.93594845534;PRDM1:-0.938906483146;SPI1:-0.945029830444;PDX1:-0.947511016826;ALX1:-0.948694684301;TFDP1:-0.950260499367;FOX{D1,D2}:-0.954135649275;IRF7:-0.959326155741;STAT2,4,6:-0.99674544739;FOX{I1,J2}:-0.998105347184;PAX6:-1.02652244156;ATF5_CREB3:-1.03388502475;FOXN1:-1.10246092692;BPTF:-1.12052050968;FOXA2:-1.16545376034;IRF1,2:-1.17466582026;FOXP3:-1.19209928288;PAX3,7:-1.23016021077;TGIF1:-1.23094085233;PAX4:-1.23735967756;POU5F1:-1.23789821084;TLX2:-1.24347290036;CDX1,2,4:-1.27882447826;T:-1.2887519161;EGR1..3:-1.29076893803;BREu{core}:-1.29147040651;NKX3-1:-1.36635094974;RFX2..5_RFXANK_RFXAP:-1.37085624848;CREB1:-1.4101999386;NFIX:-1.41761499788;AHR_ARNT_ARNT2:-1.46225740444;FOXD3:-1.52362973787;ZFP161:-1.62796733252;FOXP1:-1.65799263684;DMAP1_NCOR{1,2}_SMARC:-1.67262489997;HBP1_HMGB_SSRP1_UBTF:-1.83227588493;ZBTB16:-1.85138027794;IKZF2:-2.09615119954;NKX6-1,2:-2.13806316023 | |top_motifs=PPARG:2.19231858905;ZNF423:2.08624415923;HOX{A5,B5}:1.91220491355;TP53:1.8460401299;GLI1..3:1.6608590143;ZNF148:1.54841478896;NKX2-1,4:1.47104256114;TBX4,5:1.41906028904;ESR1:1.4001511294;TFAP4:1.35478213264;ZIC1..3:1.33521409985;TFAP2{A,C}:1.31286450483;GCM1,2:1.30814969512;PAX5:1.29203646827;TEAD1:1.25856321455;MTF1:1.1532216989;SNAI1..3:1.09763567676;NKX2-3_NKX2-5:1.06227467739;TBP:1.02341077143;HAND1,2:1.02226924237;EP300:0.92981315117;FOXM1:0.877218290959;ZNF384:0.819003743898;RXRA_VDR{dimer}:0.778079148165;AR:0.737100805775;XCPE1{core}:0.720464098415;HMX1:0.700062371001;SP1:0.697674297327;ZNF238:0.694707977744;POU3F1..4:0.66776888609;CDC5L:0.652377901199;ZEB1:0.643335168379;TFCP2:0.615581958772;RORA:0.590655007952;NR6A1:0.584928579259;SOX17:0.550585515448;EBF1:0.527681161464;HSF1,2:0.520952780595;STAT5{A,B}:0.508599084651;NR3C1:0.497609695005;TAL1_TCF{3,4,12}:0.447395785875;GZF1:0.446264886456;UFEwm:0.424666521436;ONECUT1,2:0.39252104889;HES1:0.372671119135;RXR{A,B,G}:0.368711148253;bHLH_family:0.338079213721;FOXL1:0.333794326125;FOS_FOS{B,L1}_JUN{B,D}:0.306530476911;HOXA9_MEIS1:0.300155674769;MAZ:0.299807643637;POU6F1:0.288190467925;LHX3,4:0.286423747167;POU2F1..3:0.280743070381;PBX1:0.273540752275;NR5A1,2:0.273075048292;HOX{A6,A7,B6,B7}:0.255517573512;TLX1..3_NFIC{dimer}:0.23776599106;SOX{8,9,10}:0.236951375698;RREB1:0.226858917452;FOXQ1:0.226387996719;KLF4:0.224818220033;MYOD1:0.223962018877;BACH2:0.214577195168;GTF2A1,2:0.201274550148;SMAD1..7,9:0.189089371643;IKZF1:0.187651788712;GFI1:0.162159607466;NKX2-2,8:0.144872424902;E2F1..5:0.142999205643;ALX4:0.105629555646;HIC1:0.0787373671663;HIF1A:0.0731676919902;NFIL3:0.0704837958508;HLF:0.0679600365203;FOSL2:0.0584905042271;EN1,2:0.0574136669345;NFY{A,B,C}:0.0529743055139;SPZ1:0.0477222398608;ZNF143:0.045532118663;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0342629866513;ZBTB6:0.0271884853067;YY1:-0.0275259463031;NFE2:-0.0370117328581;GTF2I:-0.0393641574213;LEF1_TCF7_TCF7L1,2:-0.0408405978338;MAFB:-0.0679534912985;DBP:-0.085684983764;ATF2:-0.10713577903;HNF1A:-0.116039368979;SOX5:-0.118352330161;HMGA1,2:-0.158192935044;GATA6:-0.161261924612;ADNP_IRX_SIX_ZHX:-0.174547075422;XBP1:-0.193849006973;HNF4A_NR2F1,2:-0.19452802129;CEBPA,B_DDIT3:-0.205036718791;FOX{F1,F2,J1}:-0.214702036028;NFE2L2:-0.226810625583;SRF:-0.23122042057;JUN:-0.233410203126;NHLH1,2:-0.237366794447;MYB:-0.258387519419;HOX{A4,D4}:-0.287422301474;TOPORS:-0.290544438216;ESRRA:-0.334336190116;OCT4_SOX2{dimer}:-0.354318172613;ARID5B:-0.361029364734;PAX8:-0.36886834395;NANOG:-0.372520859038;NFKB1_REL_RELA:-0.395941918365;RUNX1..3:-0.398448028805;PRRX1,2:-0.40132543765;ATF6:-0.402197402404;TEF:-0.411483116969;REST:-0.425733600529;NFE2L1:-0.426726358092;RFX1:-0.4318534621;PAX1,9:-0.434659952604;MYBL2:-0.451342468297;GFI1B:-0.464672986276;NKX3-2:-0.467119783792;MED-1{core}:-0.507776730862;MEF2{A,B,C,D}:-0.534205287719;EVI1:-0.535145424346;AIRE:-0.549430426595;ELK1,4_GABP{A,B1}:-0.561144061088;NR1H4:-0.583431766685;PATZ1:-0.586963311752;SREBF1,2:-0.62545947538;TFAP2B:-0.639695841409;POU1F1:-0.652701788952;FOXO1,3,4:-0.655553906199;LMO2:-0.674196085445;NANOG{mouse}:-0.676487383413;PITX1..3:-0.688829393875;ETS1,2:-0.707682153628;SOX2:-0.708388302746;SPIB:-0.713919282037;PAX2:-0.731864268404;CRX:-0.734700409212;ATF4:-0.772248678639;CUX2:-0.774915770662;NFATC1..3:-0.797957752851;MZF1:-0.826534901903;NRF1:-0.828714683541;MYFfamily:-0.838912388572;ELF1,2,4:-0.852436967285;STAT1,3:-0.855362805688;MTE{core}:-0.874144078037;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.880157690138;GATA4:-0.900401569175;VSX1,2:-0.935908531864;RBPJ:-0.93594845534;PRDM1:-0.938906483146;SPI1:-0.945029830444;PDX1:-0.947511016826;ALX1:-0.948694684301;TFDP1:-0.950260499367;FOX{D1,D2}:-0.954135649275;IRF7:-0.959326155741;STAT2,4,6:-0.99674544739;FOX{I1,J2}:-0.998105347184;PAX6:-1.02652244156;ATF5_CREB3:-1.03388502475;FOXN1:-1.10246092692;BPTF:-1.12052050968;FOXA2:-1.16545376034;IRF1,2:-1.17466582026;FOXP3:-1.19209928288;PAX3,7:-1.23016021077;TGIF1:-1.23094085233;PAX4:-1.23735967756;POU5F1:-1.23789821084;TLX2:-1.24347290036;CDX1,2,4:-1.27882447826;T:-1.2887519161;EGR1..3:-1.29076893803;BREu{core}:-1.29147040651;NKX3-1:-1.36635094974;RFX2..5_RFXANK_RFXAP:-1.37085624848;CREB1:-1.4101999386;NFIX:-1.41761499788;AHR_ARNT_ARNT2:-1.46225740444;FOXD3:-1.52362973787;ZFP161:-1.62796733252;FOXP1:-1.65799263684;DMAP1_NCOR{1,2}_SMARC:-1.67262489997;HBP1_HMGB_SSRP1_UBTF:-1.83227588493;ZBTB16:-1.85138027794;IKZF2:-2.09615119954;NKX6-1,2:-2.13806316023 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11355-117H5;search_select_hide=table117:FF:11355-117H5 | |||
}} | }} | ||
Latest revision as of 17:54, 4 June 2020
| Name: | Placental Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11386 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11386
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11386
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.489 |
| 10 | 10 | 0.799 |
| 100 | 100 | 0.327 |
| 101 | 101 | 0.861 |
| 102 | 102 | 0.508 |
| 103 | 103 | 0.135 |
| 104 | 104 | 0.606 |
| 105 | 105 | 0.279 |
| 106 | 106 | 0.0677 |
| 107 | 107 | 0.079 |
| 108 | 108 | 0.55 |
| 109 | 109 | 0.0108 |
| 11 | 11 | 0.11 |
| 110 | 110 | 0.099 |
| 111 | 111 | 0.903 |
| 112 | 112 | 0.623 |
| 113 | 113 | 0.151 |
| 114 | 114 | 0.351 |
| 115 | 115 | 0.848 |
| 116 | 116 | 0.326 |
| 117 | 117 | 0.423 |
| 118 | 118 | 0.257 |
| 119 | 119 | 0.182 |
| 12 | 12 | 0.809 |
| 120 | 120 | 0.12 |
| 121 | 121 | 0.566 |
| 122 | 122 | 0.173 |
| 123 | 123 | 0.319 |
| 124 | 124 | 0.951 |
| 125 | 125 | 0.816 |
| 126 | 126 | 0.532 |
| 127 | 127 | 0.502 |
| 128 | 128 | 0.674 |
| 129 | 129 | 0.184 |
| 13 | 13 | 0.176 |
| 130 | 130 | 0.0776 |
| 131 | 131 | 0.476 |
| 132 | 132 | 0.869 |
| 133 | 133 | 0.102 |
| 134 | 134 | 0.349 |
| 135 | 135 | 0.507 |
| 136 | 136 | 0.372 |
| 137 | 137 | 0.323 |
| 138 | 138 | 0.0578 |
| 139 | 139 | 0.464 |
| 14 | 14 | 0.685 |
| 140 | 140 | 0.879 |
| 141 | 141 | 0.422 |
| 142 | 142 | 0.573 |
| 143 | 143 | 0.406 |
| 144 | 144 | 0.815 |
| 145 | 145 | 0.734 |
| 146 | 146 | 0.0636 |
| 147 | 147 | 0.141 |
| 148 | 148 | 0.9 |
| 149 | 149 | 0.0641 |
| 15 | 15 | 0.325 |
| 150 | 150 | 0.381 |
| 151 | 151 | 0.461 |
| 152 | 152 | 0.0587 |
| 153 | 153 | 0.541 |
| 154 | 154 | 0.588 |
| 155 | 155 | 0.305 |
| 156 | 156 | 0.544 |
| 157 | 157 | 0.465 |
| 158 | 158 | 0.917 |
| 159 | 159 | 0.539 |
| 16 | 16 | 0.0319 |
| 160 | 160 | 0.0172 |
| 161 | 161 | 0.186 |
| 162 | 162 | 0.0561 |
| 163 | 163 | 0.532 |
| 164 | 164 | 0.318 |
| 165 | 165 | 0.772 |
| 166 | 166 | 0.588 |
| 167 | 167 | 0.204 |
| 168 | 168 | 0.356 |
| 169 | 169 | 0.0662 |
| 17 | 17 | 0.0412 |
| 18 | 18 | 0.0966 |
| 19 | 19 | 0.163 |
| 2 | 2 | 0.215 |
| 20 | 20 | 0.994 |
| 21 | 21 | 0.817 |
| 22 | 22 | 0.0787 |
| 23 | 23 | 0.23 |
| 24 | 24 | 0.805 |
| 25 | 25 | 0.977 |
| 26 | 26 | 0.131 |
| 27 | 27 | 0.326 |
| 28 | 28 | 0.7 |
| 29 | 29 | 0.209 |
| 3 | 3 | 0.706 |
| 30 | 30 | 0.186 |
| 31 | 31 | 0.419 |
| 32 | 32 | 7.49436e-9 |
| 33 | 33 | 0.169 |
| 34 | 34 | 0.44 |
| 35 | 35 | 0.744 |
| 36 | 36 | 0.489 |
| 37 | 37 | 0.168 |
| 38 | 38 | 0.374 |
| 39 | 39 | 0.0899 |
| 4 | 4 | 0.196 |
| 40 | 40 | 0.0056 |
| 41 | 41 | 0.607 |
| 42 | 42 | 0.965 |
| 43 | 43 | 0.236 |
| 44 | 44 | 0.606 |
| 45 | 45 | 0.231 |
| 46 | 46 | 0.272 |
| 47 | 47 | 0.433 |
| 48 | 48 | 0.109 |
| 49 | 49 | 0.26 |
| 5 | 5 | 0.713 |
| 50 | 50 | 0.553 |
| 51 | 51 | 0.259 |
| 52 | 52 | 0.431 |
| 53 | 53 | 0.841 |
| 54 | 54 | 0.431 |
| 55 | 55 | 0.984 |
| 56 | 56 | 0.327 |
| 57 | 57 | 0.361 |
| 58 | 58 | 0.854 |
| 59 | 59 | 0.0526 |
| 6 | 6 | 0.953 |
| 60 | 60 | 0.399 |
| 61 | 61 | 0.867 |
| 62 | 62 | 0.921 |
| 63 | 63 | 0.334 |
| 64 | 64 | 0.155 |
| 65 | 65 | 0.234 |
| 66 | 66 | 0.274 |
| 67 | 67 | 0.0803 |
| 68 | 68 | 0.342 |
| 69 | 69 | 7.42423e-4 |
| 7 | 7 | 0.398 |
| 70 | 70 | 0.231 |
| 71 | 71 | 0.127 |
| 72 | 72 | 0.794 |
| 73 | 73 | 0.0489 |
| 74 | 74 | 0.179 |
| 75 | 75 | 0.203 |
| 76 | 76 | 0.411 |
| 77 | 77 | 0.0201 |
| 78 | 78 | 0.453 |
| 79 | 79 | 0.184 |
| 8 | 8 | 0.181 |
| 80 | 80 | 0.866 |
| 81 | 81 | 0.763 |
| 82 | 82 | 0.351 |
| 83 | 83 | 0.967 |
| 84 | 84 | 0.414 |
| 85 | 85 | 0.355 |
| 86 | 86 | 0.706 |
| 87 | 87 | 0.37 |
| 88 | 88 | 0.412 |
| 89 | 89 | 0.147 |
| 9 | 9 | 0.488 |
| 90 | 90 | 0.162 |
| 91 | 91 | 0.0557 |
| 92 | 92 | 0.994 |
| 93 | 93 | 0.966 |
| 94 | 94 | 0.365 |
| 95 | 95 | 0.185 |
| 96 | 96 | 0.856 |
| 97 | 97 | 0.242 |
| 98 | 98 | 0.434 |
| 99 | 99 | 0.0192 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11386
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
