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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004847
|DRA_sample_Accession=CAGE@SAMD00004847
|accession_numbers=CAGE;DRX008414;DRR009286;DRZ000711;DRZ002096
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004847
|accession_numbers=CAGE;DRX008414;DRR009286;DRZ000711;DRZ002096;DRZ012061;DRZ013446
|accession_numbers_RNASeq=sRNA-Seq;DRX037145;DRR041511;DRZ007153
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002072,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002072,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002583
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002583
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.74!60.30!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.58!49.35!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.51!80.96!HIC1;;chr15:57511609..57511651,+!p2@TCF12!1.46!46.42!TCF12;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.40!24.06!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!1.40!23.90!EBF2;;chr12:66218255..66218304,+!p3@HMGA2!1.39!61.84!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.38!26.37!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.36!38.09!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.66!ZBED1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.34!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.24!16.35!IRX2;;chr12:54393880..54393962,+!p1@HOXC9!1.21!15.27!HOXC9;;chr16:86544113..86544145,+!p1@FOXF1!1.20!18.20!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!1.18!45.65!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!1.17!20.05!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.15!35.93!OSR1;;chr12:66218183..66218209,+!p4@HMGA2!1.15!25.44!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.14!377.04!HMGA1;;chr12:54380036..54380091,+!p4@HOXC10!1.13!12.65!HOXC10;;chr11:65686732..65686756,+!p2@DRAP1!1.12!51.51!DRAP1;;chr17:46675558..46675577,-!p2@HOXB6!1.11!12.03!HOXB6;;chr12:54402745..54402788,+!p1@HOXC8!1.11!11.87!HOXC8;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.72!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!1.09!72.79!HIC1;;chr1:170632477..170632506,+!p6@PRRX1!1.08!10.95!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.07!10.64!PRRX2;;chr2:239756739..239756755,+!p2@TWIST2!1.06!18.04!TWIST2;;chr12:66218836..66218888,+!p1@HMGA2!1.05!96.38!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.05!28.53!TWIST1;;chr4:174450089..174450153,-!p2@HAND2!1.05!10.18!HAND2;;chr11:65687222..65687240,+!p7@DRAP1!1.03!12.65!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!1.03!11.87!POU2F3;;chr17:46675420..46675465,-!p3@HOXB6!1.03!11.10!HOXB6;;chr11:65687362..65687436,+!p3@DRAP1!1.02!43.49!DRAP1;;chr1:170633058..170633084,+!p5@PRRX1!1.02!9.56!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.15!TBX2;;chr9:132427972..132428056,+!p1@PRRX2!1.01!12.18!PRRX2;;chr1:170632959..170632987,+!p4@PRRX1!1.01!10.18!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!1.00!9.10!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!0.98!45.80!CREB3L1;;chr17:46622070..46622109,-!p1@HOXB2!0.98!19.43!HOXB2;;chr10:131762504..131762555,-!p1@EBF3!0.98!8.64!EBF3;;chr10:119303078..119303169,+!p2@EMX2!0.97!8.33!EMX2;;chr2:102091566..102091581,-!p1@RFX8!0.96!8.17!RFX8;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.86!HAND2;;chr15:96873984..96873999,+!p3@NR2F2!0.91!54.59!NR2F2;;chr15:96875041..96875052,+!p17@NR2F2!0.90!10.18!NR2F2;;chr1:170632762..170632786,+!p13@PRRX1!0.90!6.94!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.89!11.72!CREB3L1;;chr1:170632439..170632465,+!p11@PRRX1!0.87!6.48!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.87!6.48!HOXA9;;chr12:115121962..115121987,-!p1@TBX3!0.86!56.29!TBX3;;chr5:72744594..72744609,-!p1@FOXD1!0.86!29.92!FOXD1;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.19!FOXC2;;chr15:67430351..67430366,+!p10@SMAD3!0.86!6.17!SMAD3;;chr2:102091144..102091183,-!p2@RFX8!0.86!6.17!RFX8;;chr4:111544219..111544240,-!p1@PITX2!0.86!6.17!PITX2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.98!FOSL1;;chr4:4861385..4861398,+!p1@MSX1!0.85!18.81!MSX1;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.10!HOXB7;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.01!HIF3A;;chr1:170632115..170632136,+!p9@PRRX1!0.85!6.01!PRRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.84!57.52!NR2F2;;chr8:22550982..22550999,-!p1@EGR3!0.84!17.73!EGR3;;chr12:54422217..54422239,+!p3@HOXC6!0.84!5.86!HOXC6;;chr17:46690839..46690884,-!p1@HOXB8!0.84!5.86!HOXB8;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.10!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.63!BNC1;;chr12:54394309..54394336,+!p2@HOXC9!0.83!5.71!HOXC9;;chr1:170632137..170632172,+!p10@PRRX1!0.83!5.71!PRRX1;;chr5:133450365..133450444,+!p1@TCF7!0.82!27.30!TCF7;;chr19:42636586..42636607,-!p1@POU2F2!0.82!16.35!POU2F2;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.55!HOXA9;;chr2:119604456..119604501,-!p2@EN1!0.82!5.55!EN1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.33!NR2F2;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.40!HOXA3;;chr19:31840130..31840160,-!p2@TSHZ3!0.80!8.64!TSHZ3;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.24!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.80!5.24!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.79!25.29!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.72!TWIST1;;chr7:44143925..44143970,+!p1@AEBP1!0.78!122.44!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!0.78!11.72!GLI2;;chr11:65687243..65687276,+!p8@DRAP1!0.78!7.09!DRAP1;;chr17:46622205..46622218,-!p3@HOXB2!0.78!5.86!HOXB2;;chr7:27224842..27224872,-!p1@HOXA11!0.78!5.09!HOXA11;;chr15:96874145..96874166,+!p7@NR2F2!0.77!9.87!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.77!6.94!HOXB7;;chr17:46682321..46682362,-!p1@HOXB6!0.77!4.93!HOXB6;;chr12:115122318..115122331,-!p2@TBX3!0.77!4.93!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.77!4.93!HMGA2;;chr5:2751785..2751808,-!p2@IRX2!0.77!4.93!IRX2;;chr8:49833978..49833996,-!p1@SNAI2!0.76!108.41!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.76!32.85!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.76!8.17!FOXQ1;;chr1:170633194..170633205,+!p18@PRRX1!0.76!4.78!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.76!4.78!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.78!HOXC10;;chr2:176994408..176994492,+!p1@HOXD8!0.76!4.78!HOXD8;;chr11:65687158..65687216,+!p4@DRAP1!0.75!29.15!DRAP1;;chr20:42543506..42543549,+!p2@TOX2!0.75!11.87!TOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.75!4.63!HOXC8;;chr4:26322267..26322334,+!p3@RBPJ!0.74!11.87!RBPJ;;chr3:141121847..141121868,+!p5@ZBTB38!0.74!7.25!ZBTB38;;chr4:111558135..111558198,-!p2@PITX2!0.74!4.47!PITX2;;chr5:139492456..139492489,+!p7@PURA!0.74!4.47!PURA;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.47!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.74!4.47!HMGA2;;chr12:85673977..85674015,+!p1@ALX1!0.74!4.47!ALX1;;chr1:170632310..170632321,+!p15@PRRX1!0.73!4.32!PRRX1;;chr1:158979792..158979814,+!p2@IFI16!0.71!44.41!IFI16;;chr15:96873861..96873872,+!p9@NR2F2!0.71!9.25!NR2F2;;chr1:170632647..170632659,+!p17@PRRX1!0.71!4.16!PRRX1;;chr17:46621146..46621180,-!p10@HOXB2!0.70!4.01!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!42.41!TCF19;;chr19:31840313..31840380,-!p1@TSHZ3!0.69!10.95!TSHZ3;;chr12:66218573..66218596,+!p7@HMGA2!0.69!6.17!HMGA2;;chr17:46691732..46691766,-!p4@HOXB8!0.69!3.86!HOXB8;;chr5:3595977..3595999,+!p1@IRX1!0.69!3.86!IRX1;;chr1:221052776..221052799,+!p1@HLX!0.68!7.40!HLX;;chr18:53068911..53068935,-!p4@TCF4!0.68!4.32!TCF4;;chr6:34204672..34204692,+!p1@HMGA1!0.67!482.68!HMGA1;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.09!TBX2;;chr12:54402729..54402743,+!p3@HOXC8!0.67!3.70!HOXC8;;chr8:72756063..72756125,-!p1@MSC!0.66!7.86!MSC;;chr19:13134772..13134822,+!p2@NFIX!0.66!5.55!NFIX;;chr17:46621101..46621143,-!p7@HOXB2!0.66!5.09!HOXB2;;chr12:66218152..66218174,+!p10@HMGA2!0.66!3.86!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!0.65!15.11!SIX1;;chr15:96874927..96874938,+!p8@NR2F2!0.65!8.17!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!0.65!6.94!AEBP1;;chr17:59477197..59477212,+!p2@TBX2!0.65!6.48!TBX2;;chr18:52989031..52989079,-!p2@TCF4!0.64!8.79!TCF4;;chr5:72744445..72744466,-!p2@FOXD1!0.64!6.01!FOXD1;;chr19:45260775..45260838,+!p5@BCL3!0.64!4.63!BCL3;;chr15:96874244..96874259,+!p5@NR2F2!0.63!8.94!NR2F2;;chr7:137564372..137564394,-!p7@CREB3L2!0.63!5.86!CREB3L2;;chr8:72756667..72756736,-!p2@MSC!0.63!5.55!MSC;;chr17:46655704..46655718,-!p2@HOXB4!0.63!5.24!HOXB4;;chr15:96881221..96881240,+!p19@NR2F2!0.63!4.47!NR2F2;;chr17:46675469..46675481,-!p4@HOXB6!0.63!3.24!HOXB6;;chr1:170632051..170632081,+!p16@PRRX1!0.63!3.24!PRRX1;;chr8:72756267..72756296,-!p4@MSC!0.62!4.93!MSC;;chr1:59249732..59249749,-!p2@JUN!0.61!44.41!JUN;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.55!GLI2;;chr12:66218378..66218401,+!p6@HMGA2!0.61!5.09!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.61!4.78!SATB2;;chr12:115121802..115121814,-!p5@TBX3!0.61!3.08!TBX3;;chr12:66218420..66218439,+!p12@HMGA2!0.61!3.08!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.61!3.08!HMGA2;;chr11:65667846..65667868,-!p1@FOSL1!0.60!94.99!FOSL1;;chr1:158979872..158979898,+!p3@IFI16!0.60!10.79!IFI16;;chr12:27485762..27485776,+!p3@ARNTL2!0.60!9.25!ARNTL2;;chr1:212873267..212873332,-!p1@BATF3!0.60!4.32!BATF3;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.32!FOXF2;;chr15:96869114..96869160,+!p11@NR2F2!0.60!4.32!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.60!3.70!DRAP1;;chr7:14028488..14028516,-!p2@ETV1!0.60!3.39!ETV1;;chr7:14029283..14029311,-!p1@ETV1!0.59!18.51!ETV1;;chr3:141087393..141087426,+!p3@ZBTB38!0.59!13.72!ZBTB38;;chr15:96869165..96869183,+!p20@NR2F2!0.59!2.93!NR2F2;;chr16:86612320..86612394,+!p1@FOXL1!0.59!2.93!FOXL1;;chr17:46692457..46692484,-!p2@HOXB8!0.59!2.93!HOXB8;;chr12:54378923..54378966,+!p1@HOXC10!0.59!2.93!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.59!2.93!HOXC9;;chr1:170633225..170633230,+!p25@PRRX1!0.59!2.93!PRRX1;;chr15:96876966..96877017,+!p12@NR2F2!0.58!4.32!NR2F2;;chr16:54320101..54320125,-!p4@IRX3!0.58!4.32!IRX3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.32!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.58!3.39!HOXB2;;chr2:102091478..102091490,-!p3@RFX8!0.58!2.78!RFX8;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.78!HOXA10;;chr9:1050331..1050363,+!p1@DMRT2!0.58!2.78!DMRT2;;chr5:137804484..137804498,+!p2@EGR1!0.57!13.11!EGR1;;chr15:96873921..96873946,+!p1@NR2F2!0.56!93.61!NR2F2;;chr3:71007344..71007348,-!p6@FOXP1!0.56!12.65!FOXP1;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.41!BRCA1;;chr5:321810..321877,+!p1@AHRR!0.56!10.02!AHRR;;chr15:96874216..96874236,+!p13@NR2F2!0.56!4.47!NR2F2;;chr7:44143997..44144008,+!p3@AEBP1!0.56!3.55!AEBP1;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.62!HOXA7;;chr9:1051481..1051496,+!p3@DMRT2!0.56!2.62!DMRT2;;chr19:47523058..47523114,+!p1@NPAS1!0.56!2.62!NPAS1;;chr12:115121770..115121781,-!p4@TBX3!0.56!2.62!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.56!2.62!TBX3;;chr12:124873357..124873401,-!p1@NCO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|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.74!60.30!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.58!49.35!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.51!80.96!HIC1;;chr15:57511609..57511651,+!p2@TCF12!1.46!46.42!TCF12;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.40!24.06!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!1.40!23.90!EBF2;;chr12:66218255..66218304,+!p3@HMGA2!1.39!61.84!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.38!26.37!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.36!38.09!DRAP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.66!ZBED1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.34!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.24!16.35!IRX2;;chr12:54393880..54393962,+!p1@HOXC9!1.21!15.27!HOXC9;;chr16:86544113..86544145,+!p1@FOXF1!1.20!18.20!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!1.18!45.65!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!1.17!20.05!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.15!35.93!OSR1;;chr12:66218183..66218209,+!p4@HMGA2!1.15!25.44!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.14!377.04!HMGA1;;chr12:54380036..54380091,+!p4@HOXC10!1.13!12.65!HOXC10;;chr11:65686732..65686756,+!p2@DRAP1!1.12!51.51!DRAP1;;chr17:46675558..46675577,-!p2@HOXB6!1.11!12.03!HOXB6;;chr12:54402745..54402788,+!p1@HOXC8!1.11!11.87!HOXC8;;chr1:170632723..170632739,+!p8@PRRX1!1.10!11.72!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!1.09!72.79!HIC1;;chr1:170632477..170632506,+!p6@PRRX1!1.08!10.95!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.07!10.64!PRRX2;;chr2:239756739..239756755,+!p2@TWIST2!1.06!18.04!TWIST2;;chr12:66218836..66218888,+!p1@HMGA2!1.05!96.38!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.05!28.53!TWIST1;;chr4:174450089..174450153,-!p2@HAND2!1.05!10.18!HAND2;;chr11:65687222..65687240,+!p7@DRAP1!1.03!12.65!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!1.03!11.87!POU2F3;;chr17:46675420..46675465,-!p3@HOXB6!1.03!11.10!HOXB6;;chr11:65687362..65687436,+!p3@DRAP1!1.02!43.49!DRAP1;;chr1:170633058..170633084,+!p5@PRRX1!1.02!9.56!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.15!TBX2;;chr9:132427972..132428056,+!p1@PRRX2!1.01!12.18!PRRX2;;chr1:170632959..170632987,+!p4@PRRX1!1.01!10.18!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!1.00!9.10!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!0.98!45.80!CREB3L1;;chr17:46622070..46622109,-!p1@HOXB2!0.98!19.43!HOXB2;;chr10:131762504..131762555,-!p1@EBF3!0.98!8.64!EBF3;;chr10:119303078..119303169,+!p2@EMX2!0.97!8.33!EMX2;;chr2:102091566..102091581,-!p1@RFX8!0.96!8.17!RFX8;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.86!HAND2;;chr15:96873984..96873999,+!p3@NR2F2!0.91!54.59!NR2F2;;chr15:96875041..96875052,+!p17@NR2F2!0.90!10.18!NR2F2;;chr1:170632762..170632786,+!p13@PRRX1!0.90!6.94!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.89!11.72!CREB3L1;;chr1:170632439..170632465,+!p11@PRRX1!0.87!6.48!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.87!6.48!HOXA9;;chr12:115121962..115121987,-!p1@TBX3!0.86!56.29!TBX3;;chr5:72744594..72744609,-!p1@FOXD1!0.86!29.92!FOXD1;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.19!FOXC2;;chr15:67430351..67430366,+!p10@SMAD3!0.86!6.17!SMAD3;;chr2:102091144..102091183,-!p2@RFX8!0.86!6.17!RFX8;;chr4:111544219..111544240,-!p1@PITX2!0.86!6.17!PITX2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.98!FOSL1;;chr4:4861385..4861398,+!p1@MSX1!0.85!18.81!MSX1;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.10!HOXB7;;chr19:46801639..46801699,+!p1@HIF3A!0.85!6.01!HIF3A;;chr1:170632115..170632136,+!p9@PRRX1!0.85!6.01!PRRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.84!57.52!NR2F2;;chr8:22550982..22550999,-!p1@EGR3!0.84!17.73!EGR3;;chr12:54422217..54422239,+!p3@HOXC6!0.84!5.86!HOXC6;;chr17:46690839..46690884,-!p1@HOXB8!0.84!5.86!HOXB8;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.10!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.63!BNC1;;chr12:54394309..54394336,+!p2@HOXC9!0.83!5.71!HOXC9;;chr1:170632137..170632172,+!p10@PRRX1!0.83!5.71!PRRX1;;chr5:133450365..133450444,+!p1@TCF7!0.82!27.30!TCF7;;chr19:42636586..42636607,-!p1@POU2F2!0.82!16.35!POU2F2;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.55!HOXA9;;chr2:119604456..119604501,-!p2@EN1!0.82!5.55!EN1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.33!NR2F2;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.40!HOXA3;;chr19:31840130..31840160,-!p2@TSHZ3!0.80!8.64!TSHZ3;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.24!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.80!5.24!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.79!25.29!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.72!TWIST1;;chr7:44143925..44143970,+!p1@AEBP1!0.78!122.44!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!0.78!11.72!GLI2;;chr11:65687243..65687276,+!p8@DRAP1!0.78!7.09!DRAP1;;chr17:46622205..46622218,-!p3@HOXB2!0.78!5.86!HOXB2;;chr7:27224842..27224872,-!p1@HOXA11!0.78!5.09!HOXA11;;chr15:96874145..96874166,+!p7@NR2F2!0.77!9.87!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.77!6.94!HOXB7;;chr17:46682321..46682362,-!p1@HOXB6!0.77!4.93!HOXB6;;chr12:115122318..115122331,-!p2@TBX3!0.77!4.93!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.77!4.93!HMGA2;;chr5:2751785..2751808,-!p2@IRX2!0.77!4.93!IRX2;;chr8:49833978..49833996,-!p1@SNAI2!0.76!108.41!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.76!32.85!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.76!8.17!FOXQ1;;chr1:170633194..170633205,+!p18@PRRX1!0.76!4.78!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.76!4.78!PRRX1;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.78!HOXC10;;chr2:176994408..176994492,+!p1@HOXD8!0.76!4.78!HOXD8;;chr11:65687158..65687216,+!p4@DRAP1!0.75!29.15!DRAP1;;chr20:42543506..42543549,+!p2@TOX2!0.75!11.87!TOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.75!4.63!HOXC8;;chr4:26322267..26322334,+!p3@RBPJ!0.74!11.87!RBPJ;;chr3:141121847..141121868,+!p5@ZBTB38!0.74!7.25!ZBTB38;;chr4:111558135..111558198,-!p2@PITX2!0.74!4.47!PITX2;;chr5:139492456..139492489,+!p7@PURA!0.74!4.47!PURA;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.47!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.74!4.47!HMGA2;;chr12:85673977..85674015,+!p1@ALX1!0.74!4.47!ALX1;;chr1:170632310..170632321,+!p15@PRRX1!0.73!4.32!PRRX1;;chr1:158979792..158979814,+!p2@IFI16!0.71!44.41!IFI16;;chr15:96873861..96873872,+!p9@NR2F2!0.71!9.25!NR2F2;;chr1:170632647..170632659,+!p17@PRRX1!0.71!4.16!PRRX1;;chr17:46621146..46621180,-!p10@HOXB2!0.70!4.01!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!42.41!TCF19;;chr19:31840313..31840380,-!p1@TSHZ3!0.69!10.95!TSHZ3;;chr12:66218573..66218596,+!p7@HMGA2!0.69!6.17!HMGA2;;chr17:46691732..46691766,-!p4@HOXB8!0.69!3.86!HOXB8;;chr5:3595977..3595999,+!p1@IRX1!0.69!3.86!IRX1;;chr1:221052776..221052799,+!p1@HLX!0.68!7.40!HLX;;chr18:53068911..53068935,-!p4@TCF4!0.68!4.32!TCF4;;chr6:34204672..34204692,+!p1@HMGA1!0.67!482.68!HMGA1;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.09!TBX2;;chr12:54402729..54402743,+!p3@HOXC8!0.67!3.70!HOXC8;;chr8:72756063..72756125,-!p1@MSC!0.66!7.86!MSC;;chr19:13134772..13134822,+!p2@NFIX!0.66!5.55!NFIX;;chr17:46621101..46621143,-!p7@HOXB2!0.66!5.09!HOXB2;;chr12:66218152..66218174,+!p10@HMGA2!0.66!3.86!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!0.65!15.11!SIX1;;chr15:96874927..96874938,+!p8@NR2F2!0.65!8.17!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!0.65!6.94!AEBP1;;chr17:59477197..59477212,+!p2@TBX2!0.65!6.48!TBX2;;chr18:52989031..52989079,-!p2@TCF4!0.64!8.79!TCF4;;chr5:72744445..72744466,-!p2@FOXD1!0.64!6.01!FOXD1;;chr19:45260775..45260838,+!p5@BCL3!0.64!4.63!BCL3;;chr15:96874244..96874259,+!p5@NR2F2!0.63!8.94!NR2F2;;chr7:137564372..137564394,-!p7@CREB3L2!0.63!5.86!CREB3L2;;chr8:72756667..72756736,-!p2@MSC!0.63!5.55!MSC;;chr17:46655704..46655718,-!p2@HOXB4!0.63!5.24!HOXB4;;chr15:96881221..96881240,+!p19@NR2F2!0.63!4.47!NR2F2;;chr17:46675469..46675481,-!p4@HOXB6!0.63!3.24!HOXB6;;chr1:170632051..170632081,+!p16@PRRX1!0.63!3.24!PRRX1;;chr8:72756267..72756296,-!p4@MSC!0.62!4.93!MSC;;chr1:59249732..59249749,-!p2@JUN!0.61!44.41!JUN;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.55!GLI2;;chr12:66218378..66218401,+!p6@HMGA2!0.61!5.09!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.61!4.78!SATB2;;chr12:115121802..115121814,-!p5@TBX3!0.61!3.08!TBX3;;chr12:66218420..66218439,+!p12@HMGA2!0.61!3.08!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.61!3.08!HMGA2;;chr11:65667846..65667868,-!p1@FOSL1!0.60!94.99!FOSL1;;chr1:158979872..158979898,+!p3@IFI16!0.60!10.79!IFI16;;chr12:27485762..27485776,+!p3@ARNTL2!0.60!9.25!ARNTL2;;chr1:212873267..212873332,-!p1@BATF3!0.60!4.32!BATF3;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.32!FOXF2;;chr15:96869114..96869160,+!p11@NR2F2!0.60!4.32!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.60!3.70!DRAP1;;chr7:14028488..14028516,-!p2@ETV1!0.60!3.39!ETV1;;chr7:14029283..14029311,-!p1@ETV1!0.59!18.51!ETV1;;chr3:141087393..141087426,+!p3@ZBTB38!0.59!13.72!ZBTB38;;chr15:96869165..96869183,+!p20@NR2F2!0.59!2.93!NR2F2;;chr16:86612320..86612394,+!p1@FOXL1!0.59!2.93!FOXL1;;chr17:46692457..46692484,-!p2@HOXB8!0.59!2.93!HOXB8;;chr12:54378923..54378966,+!p1@HOXC10!0.59!2.93!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.59!2.93!HOXC9;;chr1:170633225..170633230,+!p25@PRRX1!0.59!2.93!PRRX1;;chr15:96876966..96877017,+!p12@NR2F2!0.58!4.32!NR2F2;;chr16:54320101..54320125,-!p4@IRX3!0.58!4.32!IRX3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.32!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.58!3.39!HOXB2;;chr2:102091478..102091490,-!p3@RFX8!0.58!2.78!RFX8;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.78!HOXA10;;chr9:1050331..1050363,+!p1@DMRT2!0.58!2.78!DMRT2;;chr5:137804484..137804498,+!p2@EGR1!0.57!13.11!EGR1;;chr15:96873921..96873946,+!p1@NR2F2!0.56!93.61!NR2F2;;chr3:71007344..71007348,-!p6@FOXP1!0.56!12.65!FOXP1;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.41!BRCA1;;chr5:321810..321877,+!p1@AHRR!0.56!10.02!AHRR;;chr15:96874216..96874236,+!p13@NR2F2!0.56!4.47!NR2F2;;chr7:44143997..44144008,+!p3@AEBP1!0.56!3.55!AEBP1;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.62!HOXA7;;chr9:1051481..1051496,+!p3@DMRT2!0.56!2.62!DMRT2;;chr19:47523058..47523114,+!p1@NPAS1!0.56!2.62!NPAS1;;chr12:115121770..115121781,-!p4@TBX3!0.56!2.62!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.56!2.62!TBX3;;chr12:124873357..124873401,-!p1@NCO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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002583;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11981.11356-117H6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11981.11356-117H6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11981.11356-117H6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11981.11356-117H6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520subcutaneous%252c%2520donor2.CNhs11981.11356-117H6.hg38.nobarcode.ctss.bed.gz
|id=FF:11356-117H6
|id=FF:11356-117H6
|is_a=EFO:0002091;;FF:0000142
|is_a=EFO:0002091;;FF:0000142
|is_obsolete=
|is_obsolete=
|library_id=CNhs11981
|library_id=CNhs11981
|library_id_phase_based=1:CNhs11981
|library_id_phase_based=2:CNhs11981
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11356
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CGTACG.11356
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11356
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CGTACG.11356
|name=Preadipocyte - subcutaneous, donor2
|name=Preadipocyte - subcutaneous, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11981,LSID836,release011,COMPLETED
|profile_hcage=CNhs11981,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=UFEwm:1.81529635012;ALX4:1.77921625269;EN1,2:1.69501260246;NKX2-2,8:1.65601877751;KLF4:1.41957534417;HES1:1.32669609952;PAX1,9:1.24219609724;GATA4:1.22579190992;GZF1:1.21037619093;ZNF238:1.20951029739;PAX8:1.15871656151;HOX{A5,B5}:1.09982446122;TAL1_TCF{3,4,12}:1.03884348724;ZNF384:1.02138985132;TFDP1:1.02077369158;HSF1,2:0.99281671246;HOX{A6,A7,B6,B7}:0.96907719945;NR3C1:0.841127177995;CDC5L:0.838720959811;FOXL1:0.798167094326;RXR{A,B,G}:0.780946985585;NANOG{mouse}:0.772350853434;ESR1:0.763303343629;E2F1..5:0.76100457118;HOX{A4,D4}:0.740893822007;TEF:0.732289251306;NFIX:0.714330437215;NKX3-1:0.665527959885;YY1:0.653379427191;TOPORS:0.648384252198;GLI1..3:0.64660541429;PRDM1:0.620849474475;MYB:0.62033888563;GFI1B:0.618736350519;HAND1,2:0.6110727291;MYBL2:0.60096031433;SRF:0.585531397708;ZIC1..3:0.581320726856;IKZF1:0.560473323729;EVI1:0.538506985774;ARID5B:0.508524619385;ATF6:0.498994499644;RXRA_VDR{dimer}:0.495698711061;TLX1..3_NFIC{dimer}:0.494086903317;ZBTB6:0.493249238206;MZF1:0.457665510768;TEAD1:0.454289958143;NFE2L1:0.454175281927;TFCP2:0.441006903459;NKX3-2:0.435807668583;NKX6-1,2:0.431177700111;GFI1:0.428815068936;TP53:0.423668660942;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.420878956562;GCM1,2:0.408718422431;NFATC1..3:0.406039617355;NFE2L2:0.394527963352;SPZ1:0.354588017163;NR1H4:0.315717038633;FOXD3:0.272002326034;EBF1:0.25220566774;SOX17:0.243526430315;BACH2:0.231408421786;FOX{I1,J2}:0.227942668018;GTF2I:0.214606595446;ELK1,4_GABP{A,B1}:0.214155373777;ZNF143:0.213972240957;IRF1,2:0.204800925973;TFAP4:0.172789121632;POU3F1..4:0.170677191138;FOS_FOS{B,L1}_JUN{B,D}:0.154065572416;POU2F1..3:0.14883628714;XBP1:0.128731531194;XCPE1{core}:0.113259747506;TBP:0.0811643628696;FOXQ1:0.0803024411703;GTF2A1,2:0.0569663036219;ZNF423:0.0555692741045;MAFB:0.0347747666151;PAX3,7:0.0152190697441;LHX3,4:0.013214708323;AIRE:-0.000317228314667;TBX4,5:-0.00224980752055;ALX1:-0.0193232777277;PAX4:-0.0304321427708;bHLH_family:-0.0316966741146;NRF1:-0.0439297885371;HNF1A:-0.0439960059622;FOXM1:-0.0457527441305;HLF:-0.0558863987672;ESRRA:-0.0669289200105;TFAP2{A,C}:-0.0716380332562;HBP1_HMGB_SSRP1_UBTF:-0.0757062707286;PPARG:-0.0853032626161;PBX1:-0.101573180382;HIC1:-0.130594317625;AR:-0.136808678385;NR6A1:-0.155087994468;HIF1A:-0.163591326965;HMGA1,2:-0.165164553817;PATZ1:-0.166817392804;TFAP2B:-0.170242901025;RUNX1..3:-0.177134391583;MTE{core}:-0.190462042067;NFKB1_REL_RELA:-0.214663808066;DBP:-0.216946223117;T:-0.218249865395;EGR1..3:-0.230279302252;ONECUT1,2:-0.233447109224;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.234996960178;NR5A1,2:-0.237279305877;NFY{A,B,C}:-0.251734742838;ZNF148:-0.254436597827;POU6F1:-0.254829033938;FOSL2:-0.257755109092;STAT5{A,B}:-0.261162107771;STAT2,4,6:-0.269446223439;DMAP1_NCOR{1,2}_SMARC:-0.273940154029;OCT4_SOX2{dimer}:-0.279987497229;MYFfamily:-0.300807139419;ELF1,2,4:-0.302784808852;CREB1:-0.30708605698;AHR_ARNT_ARNT2:-0.307146671921;MTF1:-0.307774711499;SOX{8,9,10}:-0.30802580079;NFIL3:-0.308985556717;SPI1:-0.315040882577;SMAD1..7,9:-0.316201542729;REST:-0.323811571632;RREB1:-0.327362750347;IRF7:-0.329364526749;HNF4A_NR2F1,2:-0.332719817633;NKX2-1,4:-0.339935937605;HMX1:-0.355687144582;ZBTB16:-0.36735097261;PRRX1,2:-0.370408767952;LEF1_TCF7_TCF7L1,2:-0.378827890533;TLX2:-0.379309296761;STAT1,3:-0.383310835605;CDX1,2,4:-0.415557726618;RFX1:-0.422509648283;NHLH1,2:-0.422798283277;POU5F1:-0.431664436184;ZFP161:-0.451742455595;NFE2:-0.468604156798;CRX:-0.471457630403;SPIB:-0.48543970748;MEF2{A,B,C,D}:-0.487824739214;PITX1..3:-0.489669040142;FOXO1,3,4:-0.49012840296;JUN:-0.49412631074;IKZF2:-0.524146724849;MAZ:-0.534210265393;MED-1{core}:-0.564244454665;FOXP1:-0.565804240952;CUX2:-0.57307301124;NKX2-3_NKX2-5:-0.615772371903;ETS1,2:-0.619499574428;HOXA9_MEIS1:-0.646199152824;BREu{core}:-0.65825546693;SOX5:-0.683065246687;LMO2:-0.686129048513;PAX5:-0.697016749805;PAX2:-0.705658622829;TGIF1:-0.741688945259;SNAI1..3:-0.779468591603;ATF5_CREB3:-0.783279356143;BPTF:-0.785807843443;GATA6:-0.78586406542;VSX1,2:-0.806688673488;EP300:-0.817679760283;RFX2..5_RFXANK_RFXAP:-0.856863241239;CEBPA,B_DDIT3:-0.856918733947;FOXP3:-0.885091404651;ZEB1:-0.899326208058;POU1F1:-0.900423054454;FOXA2:-0.912804744018;SP1:-0.913175287683;SOX2:-1.01016285896;PDX1:-1.03286782238;ATF2:-1.03623699307;FOXN1:-1.07991639193;RBPJ:-1.14746831163;NANOG:-1.22118886245;PAX6:-1.2269587236;ADNP_IRX_SIX_ZHX:-1.23021406629;FOX{D1,D2}:-1.24646754734;MYOD1:-1.24848076274;ATF4:-1.33116511265;SREBF1,2:-1.44470130358;RORA:-1.56889609805;FOX{F1,F2,J1}:-1.85905600875
|top_motifs=UFEwm:1.81529635012;ALX4:1.77921625269;EN1,2:1.69501260246;NKX2-2,8:1.65601877751;KLF4:1.41957534417;HES1:1.32669609952;PAX1,9:1.24219609724;GATA4:1.22579190992;GZF1:1.21037619093;ZNF238:1.20951029739;PAX8:1.15871656151;HOX{A5,B5}:1.09982446122;TAL1_TCF{3,4,12}:1.03884348724;ZNF384:1.02138985132;TFDP1:1.02077369158;HSF1,2:0.99281671246;HOX{A6,A7,B6,B7}:0.96907719945;NR3C1:0.841127177995;CDC5L:0.838720959811;FOXL1:0.798167094326;RXR{A,B,G}:0.780946985585;NANOG{mouse}:0.772350853434;ESR1:0.763303343629;E2F1..5:0.76100457118;HOX{A4,D4}:0.740893822007;TEF:0.732289251306;NFIX:0.714330437215;NKX3-1:0.665527959885;YY1:0.653379427191;TOPORS:0.648384252198;GLI1..3:0.64660541429;PRDM1:0.620849474475;MYB:0.62033888563;GFI1B:0.618736350519;HAND1,2:0.6110727291;MYBL2:0.60096031433;SRF:0.585531397708;ZIC1..3:0.581320726856;IKZF1:0.560473323729;EVI1:0.538506985774;ARID5B:0.508524619385;ATF6:0.498994499644;RXRA_VDR{dimer}:0.495698711061;TLX1..3_NFIC{dimer}:0.494086903317;ZBTB6:0.493249238206;MZF1:0.457665510768;TEAD1:0.454289958143;NFE2L1:0.454175281927;TFCP2:0.441006903459;NKX3-2:0.435807668583;NKX6-1,2:0.431177700111;GFI1:0.428815068936;TP53:0.423668660942;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.420878956562;GCM1,2:0.408718422431;NFATC1..3:0.406039617355;NFE2L2:0.394527963352;SPZ1:0.354588017163;NR1H4:0.315717038633;FOXD3:0.272002326034;EBF1:0.25220566774;SOX17:0.243526430315;BACH2:0.231408421786;FOX{I1,J2}:0.227942668018;GTF2I:0.214606595446;ELK1,4_GABP{A,B1}:0.214155373777;ZNF143:0.213972240957;IRF1,2:0.204800925973;TFAP4:0.172789121632;POU3F1..4:0.170677191138;FOS_FOS{B,L1}_JUN{B,D}:0.154065572416;POU2F1..3:0.14883628714;XBP1:0.128731531194;XCPE1{core}:0.113259747506;TBP:0.0811643628696;FOXQ1:0.0803024411703;GTF2A1,2:0.0569663036219;ZNF423:0.0555692741045;MAFB:0.0347747666151;PAX3,7:0.0152190697441;LHX3,4:0.013214708323;AIRE:-0.000317228314667;TBX4,5:-0.00224980752055;ALX1:-0.0193232777277;PAX4:-0.0304321427708;bHLH_family:-0.0316966741146;NRF1:-0.0439297885371;HNF1A:-0.0439960059622;FOXM1:-0.0457527441305;HLF:-0.0558863987672;ESRRA:-0.0669289200105;TFAP2{A,C}:-0.0716380332562;HBP1_HMGB_SSRP1_UBTF:-0.0757062707286;PPARG:-0.0853032626161;PBX1:-0.101573180382;HIC1:-0.130594317625;AR:-0.136808678385;NR6A1:-0.155087994468;HIF1A:-0.163591326965;HMGA1,2:-0.165164553817;PATZ1:-0.166817392804;TFAP2B:-0.170242901025;RUNX1..3:-0.177134391583;MTE{core}:-0.190462042067;NFKB1_REL_RELA:-0.214663808066;DBP:-0.216946223117;T:-0.218249865395;EGR1..3:-0.230279302252;ONECUT1,2:-0.233447109224;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.234996960178;NR5A1,2:-0.237279305877;NFY{A,B,C}:-0.251734742838;ZNF148:-0.254436597827;POU6F1:-0.254829033938;FOSL2:-0.257755109092;STAT5{A,B}:-0.261162107771;STAT2,4,6:-0.269446223439;DMAP1_NCOR{1,2}_SMARC:-0.273940154029;OCT4_SOX2{dimer}:-0.279987497229;MYFfamily:-0.300807139419;ELF1,2,4:-0.302784808852;CREB1:-0.30708605698;AHR_ARNT_ARNT2:-0.307146671921;MTF1:-0.307774711499;SOX{8,9,10}:-0.30802580079;NFIL3:-0.308985556717;SPI1:-0.315040882577;SMAD1..7,9:-0.316201542729;REST:-0.323811571632;RREB1:-0.327362750347;IRF7:-0.329364526749;HNF4A_NR2F1,2:-0.332719817633;NKX2-1,4:-0.339935937605;HMX1:-0.355687144582;ZBTB16:-0.36735097261;PRRX1,2:-0.370408767952;LEF1_TCF7_TCF7L1,2:-0.378827890533;TLX2:-0.379309296761;STAT1,3:-0.383310835605;CDX1,2,4:-0.415557726618;RFX1:-0.422509648283;NHLH1,2:-0.422798283277;POU5F1:-0.431664436184;ZFP161:-0.451742455595;NFE2:-0.468604156798;CRX:-0.471457630403;SPIB:-0.48543970748;MEF2{A,B,C,D}:-0.487824739214;PITX1..3:-0.489669040142;FOXO1,3,4:-0.49012840296;JUN:-0.49412631074;IKZF2:-0.524146724849;MAZ:-0.534210265393;MED-1{core}:-0.564244454665;FOXP1:-0.565804240952;CUX2:-0.57307301124;NKX2-3_NKX2-5:-0.615772371903;ETS1,2:-0.619499574428;HOXA9_MEIS1:-0.646199152824;BREu{core}:-0.65825546693;SOX5:-0.683065246687;LMO2:-0.686129048513;PAX5:-0.697016749805;PAX2:-0.705658622829;TGIF1:-0.741688945259;SNAI1..3:-0.779468591603;ATF5_CREB3:-0.783279356143;BPTF:-0.785807843443;GATA6:-0.78586406542;VSX1,2:-0.806688673488;EP300:-0.817679760283;RFX2..5_RFXANK_RFXAP:-0.856863241239;CEBPA,B_DDIT3:-0.856918733947;FOXP3:-0.885091404651;ZEB1:-0.899326208058;POU1F1:-0.900423054454;FOXA2:-0.912804744018;SP1:-0.913175287683;SOX2:-1.01016285896;PDX1:-1.03286782238;ATF2:-1.03623699307;FOXN1:-1.07991639193;RBPJ:-1.14746831163;NANOG:-1.22118886245;PAX6:-1.2269587236;ADNP_IRX_SIX_ZHX:-1.23021406629;FOX{D1,D2}:-1.24646754734;MYOD1:-1.24848076274;ATF4:-1.33116511265;SREBF1,2:-1.44470130358;RORA:-1.56889609805;FOX{F1,F2,J1}:-1.85905600875
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11356-117H6;search_select_hide=table117:FF:11356-117H6
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Preadipocyte - subcutaneous, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11981
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadipose tissue
dev stage53 years old adult
sexfemale
age53
cell typepreadipocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1377
catalog numberCA802s-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004847
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11981 CAGE DRX008414 DRR009286
Accession ID Hg19

Library idBAMCTSS
CNhs11981 DRZ000711 DRZ002096
Accession ID Hg38

Library idBAMCTSS
CNhs11981 DRZ012061 DRZ013446
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004847
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.CGTACG sRNA-Seq DRX037145 DRR041511
Accession ID Hg19

Library idBAMCTSS
SRhi10009.CGTACG DRZ007153


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.391
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.431
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.181
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.184
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0623
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.719
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0908
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.444
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0623
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.453
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.248
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0623
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.405
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.165
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.559
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.478
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.378
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.658
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11981

Jaspar motifP-value
MA0002.20.351
MA0003.10.699
MA0004.10.654
MA0006.10.383
MA0007.10.323
MA0009.10.775
MA0014.10.296
MA0017.10.734
MA0018.25.49942e-7
MA0019.10.727
MA0024.10.0726
MA0025.10.00723
MA0027.10.673
MA0028.10.589
MA0029.10.675
MA0030.16.85814e-5
MA0031.16.18151e-4
MA0035.20.00634
MA0038.10.0385
MA0039.20.0368
MA0040.10.546
MA0041.10.696
MA0042.10.343
MA0043.12.1506e-9
MA0046.10.312
MA0047.20.164
MA0048.10.0207
MA0050.10.879
MA0051.10.915
MA0052.10.0419
MA0055.10.102
MA0057.10.225
MA0058.10.388
MA0059.10.0311
MA0060.10.00129
MA0061.10.608
MA0062.20.0172
MA0065.20.717
MA0066.10.339
MA0067.16.48901e-4
MA0068.10.0649
MA0069.10.107
MA0070.10.304
MA0071.10.702
MA0072.10.315
MA0073.10.834
MA0074.10.285
MA0076.10.658
MA0077.10.459
MA0078.10.919
MA0079.20.267
MA0080.23.91284e-7
MA0081.10.0537
MA0083.10.0609
MA0084.10.478
MA0087.10.304
MA0088.10.0115
MA0090.10.399
MA0091.10.0556
MA0092.10.266
MA0093.10.666
MA0099.20.937
MA0100.10.379
MA0101.10.189
MA0102.20.00358
MA0103.10.00556
MA0104.20.627
MA0105.10.00797
MA0106.10.0214
MA0107.10.179
MA0108.20.572
MA0111.10.992
MA0112.20.008
MA0113.10.748
MA0114.10.803
MA0115.10.921
MA0116.10.0149
MA0117.10.821
MA0119.10.0391
MA0122.10.116
MA0124.10.73
MA0125.10.24
MA0131.10.669
MA0135.10.386
MA0136.11.68972e-5
MA0137.20.429
MA0138.20.743
MA0139.10.846
MA0140.10.0921
MA0141.10.522
MA0142.10.984
MA0143.10.862
MA0144.10.858
MA0145.10.656
MA0146.10.398
MA0147.10.186
MA0148.10.25
MA0149.10.379
MA0150.10.16
MA0152.10.0502
MA0153.10.0534
MA0154.10.188
MA0155.10.923
MA0156.17.34047e-5
MA0157.10.0231
MA0159.10.739
MA0160.10.225
MA0162.10.27
MA0163.12.674e-6
MA0164.10.876
MA0258.10.607
MA0259.10.728



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11981

Novel motifP-value
10.176
100.0311
1000.76
1010.628
1020.805
1030.187
1040.82
1050.231
1060.162
1070.101
1080.418
1090.178
110.217
1100.0539
1110.211
1120.282
1130.00382
1140.368
1150.0163
1160.0249
1170.064
1180.941
1190.673
120.429
1200.0436
1210.858
1220.0129
1230.0575
1240.881
1250.1
1260.715
1270.799
1280.308
1290.902
130.676
1300.558
1310.16
1320.651
1330.0609
1340.983
1350.561
1360.78
1370.522
1380.426
1390.203
140.0846
1400.75
1410.598
1420.545
1430.103
1440.835
1450.575
1460.501
1470.0771
1480.0769
1490.163
150.998
1500.0714
1510.829
1520.0411
1530.829
1540.827
1550.0875
1560.744
1570.32
1580.00968
1590.315
160.0337
1600.0991
1610.39
1620.185
1630.795
1640.121
1650.75
1660.572
1670.747
1680.841
1690.0339
170.256
180.119
190.0182
20.268
200.579
210.00489
220.419
230.92
240.619
250.463
260.0685
270.235
280.176
290.0424
30.196
300.547
310.951
327.27825e-5
330.621
340.925
350.591
360.143
370.0753
380.882
390.211
40.896
400.149
410.26
420.614
430.626
440.0109
450.375
460.0728
470.301
480.27
490.91
50.695
500.643
510.583
520.8
530.358
540.947
550.583
560.687
570.885
580.656
590.0917
60.632
600.942
610.649
620.462
630.522
640.649
650.439
660.778
670.532
680.882
690.321
70.673
700.866
710.0401
720.961
730.0317
740.0167
750.0326
760.795
770.0471
780.989
790.0145
80.0442
800.158
810.732
820.645
830.161
840.558
850.689
860.568
870.0591
880.863
890.0657
90.289
900.76
910.862
920.619
930.626
940.571
950.0144
960.959
970.761
980.445
990.002



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11981


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002583 (subcutaneous preadipocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002072 (hypodermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000142 (human subcutaneous preadipocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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