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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001533,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003834,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005772
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002595
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005772
|accession_numbers=CAGE;DRX008502;DRR009374;DRZ000799;DRZ002184;DRZ012149;DRZ013534
|accession_numbers_RNASeq=sRNA-Seq;DRX037010;DRR041376;DRZ007018
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000175
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!1.92!82.93!EHF;;chr8:55370487..55370503,+!p1@SOX17!1.88!74.31!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.60!65.68!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!1.43!98.19!HHEX;;chr2:19558373..19558392,-!p1@OSR1!1.39!63.03!OSR1;;chr20:30433396..30433414,-!p1@FOXS1!1.31!19.24!FOXS1;;chr15:67458861..67458879,+!p17@SMAD3!1.28!17.91!SMAD3;;chr3:25470156..25470227,+!p2@RARB!1.28!17.91!RARB;;chr9:132427883..132427951,+!p2@PRRX2!1.26!17.25!PRRX2;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.66!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.25!16.59!HAND2;;chr15:67458491..67458505,+!p18@SMAD3!1.25!16.59!SMAD3;;chr9:132427972..132428056,+!p1@PRRX2!1.24!21.23!PRRX2;;chr18:19749541..19749557,+!p1@GATA6!1.21!47.77!GATA6;;chr7:1577899..1577943,+!p3@MAFK!1.21!15.26!MAFK;;chr6:34204921..34204939,+!p3@HMGA1!1.19!429.25!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!68.33!CREB3L1;;chr20:6748325..6748352,+!p1@BMP2!1.16!19.24!BMP2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.23!TFAP2A;;chr22:19748231..19748317,+!p1@TBX1!1.11!11.94!TBX1;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.60!GATA6;;chr11:65687222..65687240,+!p7@DRAP1!1.05!13.27!DRAP1;;chr22:38598086..38598105,+!p1@MAFF!1.02!101.51!MAFF;;chr19:13136130..13136165,+!p6@NFIX!1.02!12.61!NFIX;;chr15:67418177..67418204,+!p9@SMAD3!1.01!9.29!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!1.01!9.29!FOXC2;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.29!HAND2;;chr21:39870339..39870443,-!p1@ERG!1.01!9.29!ERG;;chr19:13134772..13134822,+!p2@NFIX!1.00!13.27!NFIX;;chr11:65687362..65687436,+!p3@DRAP1!0.99!40.47!DRAP1;;chr15:67418119..67418162,+!p5@SMAD3!0.97!9.29!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.96!77.62!HMGA2;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.44!CREB3;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!9.95!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.95!19.90!FOXC2;;chr16:86544113..86544145,+!p1@FOXF1!0.95!9.95!FOXF1;;chr6:126240380..126240430,+!p2@NCOA7!0.94!20.57!NCOA7;;chr11:65687158..65687216,+!p4@DRAP1!0.92!43.12!DRAP1;;chr12:66218598..66218645,+!p2@HMGA2!0.92!35.16!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.94!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.90!7.96!PRRX1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.89!88.24!ZC3H12A;;chr5:72744445..72744466,-!p2@FOXD1!0.88!11.28!FOXD1;;chr2:85981222..85981259,+!p2@ATOH8!0.88!11.28!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.63!ATOH8;;chr12:66218904..66218913,+!p11@HMGA2!0.88!6.63!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.88!6.63!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.63!TBX20;;chr11:65667846..65667868,-!p1@FOSL1!0.87!179.13!FOSL1;;chr9:35732514..35732530,+!p5@CREB3!0.87!9.29!CREB3;;chr1:170632285..170632309,+!p1@PRRX1!0.87!7.30!PRRX1;;chr2:85980951..85981004,+!p1@ATOH8!0.86!10.62!ATOH8;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.25!HHEX;;chr7:44143978..44143989,+!p2@AEBP1!0.84!11.28!AEBP1;;chr8:55370720..55370733,+!p2@SOX17!0.84!5.97!SOX17;;chr9:16705069..16705086,-!p3@BNC2!0.84!5.97!BNC2;;chr2:85981073..85981091,+!p5@ATOH8!0.84!5.97!ATOH8;;chr8:72756267..72756296,-!p4@MSC!0.83!8.62!MSC;;chr1:151032860..151032918,+!p1@MLLT11!0.82!70.99!MLLT11;;chr1:23885981..23886002,-!p1@ID3!0.81!1028.99!ID3;;chr7:44143925..44143970,+!p1@AEBP1!0.81!133.35!AEBP1;;chr12:124873852..124873881,-!p3@NCOR2!0.81!35.83!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.81!31.18!RARG;;chr11:65667884..65667895,-!p2@FOSL1!0.80!21.89!FOSL1;;chr12:66218255..66218304,+!p3@HMGA2!0.80!15.26!HMGA2;;chr3:25469724..25469773,+!p1@RARB!0.80!7.96!RARB;;chr11:34642656..34642667,+!p2@EHF!0.80!5.31!EHF;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.31!KDM5D;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.97!TCF4;;chr8:72756637..72756664,-!p3@MSC!0.79!5.97!MSC;;chr12:124873357..124873401,-!p1@NCOR2!0.77!61.70!NCOR2;;chr11:120107344..120107351,+!p1@POU2F3!0.77!5.97!POU2F3;;chr17:46621937..46621966,-!p2@HOXB2!0.76!13.93!HOXB2;;chr17:1959369..1959388,+!p2@HIC1!0.75!13.27!HIC1;;chr15:67418047..67418093,+!p4@SMAD3!0.75!5.97!SMAD3;;chr18:19749353..19749367,+!p4@GATA6!0.75!4.64!GATA6;;chr2:85981027..85981047,+!p8@ATOH8!0.75!4.64!ATOH8;;chr3:25470062..25470084,+!p4@RARB!0.75!4.64!RARB;;chr6:10412576..10412599,-!p5@TFAP2A!0.75!4.64!TFAP2A;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.97!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.74!5.97!MSC;;chr15:66994561..66994597,+!p2@SMAD6!0.73!11.28!SMAD6;;chr12:80085061..80085119,-!p6@PAWR!0.73!7.30!PAWR;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!340.34!TAX1BP3;;chr20:42543441..42543497,+!p1@TOX2!0.72!21.23!TOX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.72!18.58!ZBTB38;;chr19:16435625..16435682,+!p1@KLF2!0.71!152.59!KLF2;;chr8:145159846..145159889,+!p6@MAF1!0.70!5.97!MAF1;;chr15:83953397..83953425,-!p1@BNC1!0.70!4.64!BNC1;;chr19:13135582..13135600,+!p3@NFIX!0.70!3.98!NFIX;;chr6:28321971..28321995,-!p1@ZNF323!0.70!3.98!ZNF323;;chr7:150945865..150945896,-!p4@SMARCD3!0.70!3.98!SMARCD3;;chr7:1577952..1577963,+!p8@MAFK!0.70!3.98!MAFK;;chr19:47523058..47523114,+!p1@NPAS1!0.70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|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!1.92!82.93!EHF;;chr8:55370487..55370503,+!p1@SOX17!1.88!74.31!SOX17;;chr11:65686802..65686818,+!p6@DRAP1!1.60!65.68!DRAP1;;chr10:94449703..94449718,+!p1@HHEX!1.43!98.19!HHEX;;chr2:19558373..19558392,-!p1@OSR1!1.39!63.03!OSR1;;chr20:30433396..30433414,-!p1@FOXS1!1.31!19.24!FOXS1;;chr15:67458861..67458879,+!p17@SMAD3!1.28!17.91!SMAD3;;chr3:25470156..25470227,+!p2@RARB!1.28!17.91!RARB;;chr9:132427883..132427951,+!p2@PRRX2!1.26!17.25!PRRX2;;chr11:65686732..65686756,+!p2@DRAP1!1.25!69.66!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!1.25!16.59!HAND2;;chr15:67458491..67458505,+!p18@SMAD3!1.25!16.59!SMAD3;;chr9:132427972..132428056,+!p1@PRRX2!1.24!21.23!PRRX2;;chr18:19749541..19749557,+!p1@GATA6!1.21!47.77!GATA6;;chr7:1577899..1577943,+!p3@MAFK!1.21!15.26!MAFK;;chr6:34204921..34204939,+!p3@HMGA1!1.19!429.25!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!68.33!CREB3L1;;chr20:6748325..6748352,+!p1@BMP2!1.16!19.24!BMP2;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.23!TFAP2A;;chr22:19748231..19748317,+!p1@TBX1!1.11!11.94!TBX1;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.60!GATA6;;chr11:65687222..65687240,+!p7@DRAP1!1.05!13.27!DRAP1;;chr22:38598086..38598105,+!p1@MAFF!1.02!101.51!MAFF;;chr19:13136130..13136165,+!p6@NFIX!1.02!12.61!NFIX;;chr15:67418177..67418204,+!p9@SMAD3!1.01!9.29!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!1.01!9.29!FOXC2;;chr4:174451370..174451387,-!p1@HAND2!1.01!9.29!HAND2;;chr21:39870339..39870443,-!p1@ERG!1.01!9.29!ERG;;chr19:13134772..13134822,+!p2@NFIX!1.00!13.27!NFIX;;chr11:65687362..65687436,+!p3@DRAP1!0.99!40.47!DRAP1;;chr15:67418119..67418162,+!p5@SMAD3!0.97!9.29!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!0.96!77.62!HMGA2;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.44!CREB3;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!9.95!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.95!19.90!FOXC2;;chr16:86544113..86544145,+!p1@FOXF1!0.95!9.95!FOXF1;;chr6:126240380..126240430,+!p2@NCOA7!0.94!20.57!NCOA7;;chr11:65687158..65687216,+!p4@DRAP1!0.92!43.12!DRAP1;;chr12:66218598..66218645,+!p2@HMGA2!0.92!35.16!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.94!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.90!7.96!PRRX1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.89!88.24!ZC3H12A;;chr5:72744445..72744466,-!p2@FOXD1!0.88!11.28!FOXD1;;chr2:85981222..85981259,+!p2@ATOH8!0.88!11.28!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.63!ATOH8;;chr12:66218904..66218913,+!p11@HMGA2!0.88!6.63!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.88!6.63!HMGA2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.63!TBX20;;chr11:65667846..65667868,-!p1@FOSL1!0.87!179.13!FOSL1;;chr9:35732514..35732530,+!p5@CREB3!0.87!9.29!CREB3;;chr1:170632285..170632309,+!p1@PRRX1!0.87!7.30!PRRX1;;chr2:85980951..85981004,+!p1@ATOH8!0.86!10.62!ATOH8;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.25!HHEX;;chr7:44143978..44143989,+!p2@AEBP1!0.84!11.28!AEBP1;;chr8:55370720..55370733,+!p2@SOX17!0.84!5.97!SOX17;;chr9:16705069..16705086,-!p3@BNC2!0.84!5.97!BNC2;;chr2:85981073..85981091,+!p5@ATOH8!0.84!5.97!ATOH8;;chr8:72756267..72756296,-!p4@MSC!0.83!8.62!MSC;;chr1:151032860..151032918,+!p1@MLLT11!0.82!70.99!MLLT11;;chr1:23885981..23886002,-!p1@ID3!0.81!1028.99!ID3;;chr7:44143925..44143970,+!p1@AEBP1!0.81!133.35!AEBP1;;chr12:124873852..124873881,-!p3@NCOR2!0.81!35.83!NCOR2;;chr12:53614115..53614154,-!p1@RARG!0.81!31.18!RARG;;chr11:65667884..65667895,-!p2@FOSL1!0.80!21.89!FOSL1;;chr12:66218255..66218304,+!p3@HMGA2!0.80!15.26!HMGA2;;chr3:25469724..25469773,+!p1@RARB!0.80!7.96!RARB;;chr11:34642656..34642667,+!p2@EHF!0.80!5.31!EHF;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.31!KDM5D;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.97!TCF4;;chr8:72756637..72756664,-!p3@MSC!0.79!5.97!MSC;;chr12:124873357..124873401,-!p1@NCOR2!0.77!61.70!NCOR2;;chr11:120107344..120107351,+!p1@POU2F3!0.77!5.97!POU2F3;;chr17:46621937..46621966,-!p2@HOXB2!0.76!13.93!HOXB2;;chr17:1959369..1959388,+!p2@HIC1!0.75!13.27!HIC1;;chr15:67418047..67418093,+!p4@SMAD3!0.75!5.97!SMAD3;;chr18:19749353..19749367,+!p4@GATA6!0.75!4.64!GATA6;;chr2:85981027..85981047,+!p8@ATOH8!0.75!4.64!ATOH8;;chr3:25470062..25470084,+!p4@RARB!0.75!4.64!RARB;;chr6:10412576..10412599,-!p5@TFAP2A!0.75!4.64!TFAP2A;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.97!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.74!5.97!MSC;;chr15:66994561..66994597,+!p2@SMAD6!0.73!11.28!SMAD6;;chr12:80085061..80085119,-!p6@PAWR!0.73!7.30!PAWR;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!340.34!TAX1BP3;;chr20:42543441..42543497,+!p1@TOX2!0.72!21.23!TOX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.72!18.58!ZBTB38;;chr19:16435625..16435682,+!p1@KLF2!0.71!152.59!KLF2;;chr8:145159846..145159889,+!p6@MAF1!0.70!5.97!MAF1;;chr15:83953397..83953425,-!p1@BNC1!0.70!4.64!BNC1;;chr19:13135582..13135600,+!p3@NFIX!0.70!3.98!NFIX;;chr6:28321971..28321995,-!p1@ZNF323!0.70!3.98!ZNF323;;chr7:150945865..150945896,-!p4@SMARCD3!0.70!3.98!SMARCD3;;chr7:1577952..1577963,+!p8@MAFK!0.70!3.98!MAFK;;chr19:47523058..47523114,+!p1@NPAS1!0.70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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002595;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor2.CNhs11990.11366-117I7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor2.CNhs11990.11366-117I7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor2.CNhs11990.11366-117I7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor2.CNhs11990.11366-117I7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor2.CNhs11990.11366-117I7.hg38.nobarcode.ctss.bed.gz
|id=FF:11366-117I7
|id=FF:11366-117I7
|is_a=EFO:0002091;;FF:0000002;;FF:0000175;;FF:0000210
|is_a=EFO:0002091;;FF:0000175
|is_obsolete=
|library_id=CNhs11990
|library_id_phase_based=2:CNhs11990
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11366
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GGTAGC.11366
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11366
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GGTAGC.11366
|name=Smooth Muscle Cells - Subclavian Artery, donor2
|name=Smooth Muscle Cells - Subclavian Artery, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11990,LSID836,release011,COMPLETED
|profile_hcage=CNhs11990,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=SRhi10002,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_box=117
|rna_catalog_number=CA3010-R10a
|rna_catalog_number=CA3010-R10a
Line 56: Line 82:
|rna_tube_id=117I7
|rna_tube_id=117I7
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10002.GGTAGC
|sample_age=21
|sample_age=21
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.94055380698969e-234!GO:0005737;cytoplasm;1.87484691841574e-194!GO:0044444;cytoplasmic part;2.16784664219283e-146!GO:0043226;organelle;1.32368051495339e-133!GO:0043229;intracellular organelle;2.20056898521944e-133!GO:0043231;intracellular membrane-bound organelle;1.43774810442479e-130!GO:0043227;membrane-bound organelle;1.88632588662697e-130!GO:0044422;organelle part;3.90216259757832e-117!GO:0044446;intracellular organelle part;1.45364819833957e-115!GO:0032991;macromolecular complex;8.80516571468078e-82!GO:0005515;protein binding;1.25936260581034e-76!GO:0030529;ribonucleoprotein complex;4.31986454221775e-74!GO:0005739;mitochondrion;8.60227947319776e-65!GO:0044237;cellular metabolic process;5.10938778041777e-57!GO:0044238;primary metabolic process;1.34855211303592e-56!GO:0043233;organelle lumen;4.15016409829203e-56!GO:0031974;membrane-enclosed lumen;4.15016409829203e-56!GO:0031090;organelle membrane;1.72662289316467e-55!GO:0003723;RNA binding;4.68745487183543e-52!GO:0019538;protein metabolic process;5.41053629579272e-51!GO:0005840;ribosome;3.86914932818141e-50!GO:0043170;macromolecule metabolic process;3.29411934402963e-49!GO:0006412;translation;5.0818380001746e-48!GO:0044260;cellular macromolecule metabolic process;5.40880563688835e-46!GO:0044428;nuclear part;1.17918839464757e-45!GO:0003735;structural constituent of ribosome;2.63282550317347e-45!GO:0044267;cellular protein metabolic process;3.33650791001019e-45!GO:0044429;mitochondrial part;8.68411269266757e-44!GO:0009058;biosynthetic process;1.45909597522259e-43!GO:0043234;protein complex;9.03440177988071e-41!GO:0009059;macromolecule biosynthetic process;9.15388436773676e-41!GO:0015031;protein transport;3.88981106424599e-40!GO:0005829;cytosol;3.99711825908457e-40!GO:0016043;cellular component organization and biogenesis;1.15637728349476e-39!GO:0033036;macromolecule localization;3.21995204652602e-39!GO:0044249;cellular biosynthetic process;3.21995204652602e-39!GO:0033279;ribosomal subunit;7.98377817207905e-39!GO:0045184;establishment of protein localization;1.46441905825832e-37!GO:0008104;protein localization;9.726616176853e-37!GO:0031967;organelle envelope;2.21823455890282e-35!GO:0031975;envelope;4.92611986666802e-35!GO:0006396;RNA processing;5.21919270274833e-34!GO:0046907;intracellular transport;5.39247643968949e-31!GO:0005740;mitochondrial envelope;9.83311905605694e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.67493759805849e-29!GO:0031981;nuclear lumen;5.57909066948237e-29!GO:0005634;nucleus;1.14482277357389e-28!GO:0031966;mitochondrial membrane;7.94348549167359e-28!GO:0005783;endoplasmic reticulum;1.13574807572633e-27!GO:0016071;mRNA metabolic process;1.15460781098739e-26!GO:0006886;intracellular protein transport;4.36515306074526e-26!GO:0019866;organelle inner membrane;9.00675432261875e-26!GO:0005743;mitochondrial inner membrane;6.86711854386168e-25!GO:0008380;RNA splicing;7.52762689737568e-25!GO:0065003;macromolecular complex assembly;3.23987732813148e-24!GO:0044445;cytosolic part;3.55390225075553e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.05421097292732e-23!GO:0012505;endomembrane system;2.10448974817563e-23!GO:0006119;oxidative phosphorylation;5.40690720056089e-23!GO:0006397;mRNA processing;1.21288725746162e-22!GO:0006996;organelle organization and biogenesis;3.06026224427792e-22!GO:0043228;non-membrane-bound organelle;7.14112712083049e-22!GO:0043232;intracellular non-membrane-bound organelle;7.14112712083049e-22!GO:0022607;cellular component assembly;3.03181684263439e-21!GO:0044432;endoplasmic reticulum part;3.81622275365781e-21!GO:0044455;mitochondrial membrane part;1.2779320766934e-20!GO:0006457;protein folding;1.46535944999727e-20!GO:0005794;Golgi apparatus;1.60307338058516e-20!GO:0015934;large ribosomal subunit;3.91235355605326e-20!GO:0015935;small ribosomal subunit;1.18336699508659e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.24467003565621e-19!GO:0016462;pyrophosphatase activity;1.30711475822478e-19!GO:0051641;cellular localization;1.30711475822478e-19!GO:0051649;establishment of cellular localization;1.5412103918117e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.78070760502202e-19!GO:0017111;nucleoside-triphosphatase activity;4.02178079510155e-19!GO:0043283;biopolymer metabolic process;7.21749113475733e-18!GO:0005746;mitochondrial respiratory chain;1.1034577529972e-17!GO:0005681;spliceosome;1.51645020166458e-17!GO:0031980;mitochondrial lumen;3.42658571313346e-17!GO:0005759;mitochondrial matrix;3.42658571313346e-17!GO:0048770;pigment granule;3.8571634997402e-17!GO:0042470;melanosome;3.8571634997402e-17!GO:0005654;nucleoplasm;2.64205103467741e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.40145953524328e-16!GO:0000166;nucleotide binding;8.78022362118789e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.64137757592051e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.94899674840963e-15!GO:0003954;NADH dehydrogenase activity;1.94899674840963e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.94899674840963e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.52196884175452e-15!GO:0010467;gene expression;2.68399526581223e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.0892710468679e-15!GO:0005789;endoplasmic reticulum membrane;1.04944420647188e-14!GO:0051186;cofactor metabolic process;1.05685342727296e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.16708116085118e-14!GO:0044265;cellular macromolecule catabolic process;1.40220575136658e-14!GO:0043285;biopolymer catabolic process;2.19867268139181e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.96772234419323e-14!GO:0016192;vesicle-mediated transport;3.39658758693571e-14!GO:0016874;ligase activity;3.41912659051453e-14!GO:0048193;Golgi vesicle transport;4.69218029127572e-14!GO:0006605;protein targeting;4.86222369145158e-14!GO:0005730;nucleolus;5.54370618119309e-14!GO:0008134;transcription factor binding;5.80491524234035e-14!GO:0009057;macromolecule catabolic process;6.15587996534314e-14!GO:0051082;unfolded protein binding;6.69378179841012e-14!GO:0006512;ubiquitin cycle;1.06854998411014e-13!GO:0044451;nucleoplasm part;1.26168056585414e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.26168056585414e-13!GO:0045271;respiratory chain complex I;1.26168056585414e-13!GO:0005747;mitochondrial respiratory chain complex I;1.26168056585414e-13!GO:0022618;protein-RNA complex assembly;1.33464036440224e-13!GO:0044248;cellular catabolic process;1.43980024989489e-13!GO:0005761;mitochondrial ribosome;1.89252741326154e-13!GO:0000313;organellar ribosome;1.89252741326154e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.97831688338175e-13!GO:0042773;ATP synthesis coupled electron transport;1.97831688338175e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.7931113680353e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.02068718246022e-13!GO:0019941;modification-dependent protein catabolic process;6.63201859737044e-13!GO:0043632;modification-dependent macromolecule catabolic process;6.63201859737044e-13!GO:0044257;cellular protein catabolic process;8.54390469380581e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.36658411069808e-12!GO:0008135;translation factor activity, nucleic acid binding;1.39401530522826e-12!GO:0005793;ER-Golgi intermediate compartment;1.46896875826573e-12!GO:0030163;protein catabolic process;1.47544918324725e-12!GO:0006259;DNA metabolic process;1.93125458539358e-12!GO:0009055;electron carrier activity;2.23333113960175e-12!GO:0012501;programmed cell death;7.97048359209411e-12!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.10992213330346e-12!GO:0006915;apoptosis;1.50192141330225e-11!GO:0016491;oxidoreductase activity;1.71598257481411e-11!GO:0032553;ribonucleotide binding;1.71598257481411e-11!GO:0032555;purine ribonucleotide binding;1.71598257481411e-11!GO:0017076;purine nucleotide binding;1.79562864063045e-11!GO:0006732;coenzyme metabolic process;2.54334911873051e-11!GO:0043412;biopolymer modification;2.63923456037774e-11!GO:0009259;ribonucleotide metabolic process;4.48986617731718e-11!GO:0042254;ribosome biogenesis and assembly;8.33694553214128e-11!GO:0006464;protein modification process;1.48753426641966e-10!GO:0048523;negative regulation of cellular process;1.80510044251525e-10!GO:0009150;purine ribonucleotide metabolic process;1.80510044251525e-10!GO:0006163;purine nucleotide metabolic process;1.90360909509059e-10!GO:0008219;cell death;2.0767075845627e-10!GO:0016265;death;2.0767075845627e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.95680883113318e-10!GO:0007049;cell cycle;3.99946821313568e-10!GO:0009260;ribonucleotide biosynthetic process;5.2978616276297e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.99520300101055e-10!GO:0006164;purine nucleotide biosynthetic process;6.8177039199658e-10!GO:0003743;translation initiation factor activity;8.70665371427098e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.65665873275273e-09!GO:0000375;RNA splicing, via transesterification reactions;1.65665873275273e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.65665873275273e-09!GO:0008639;small protein conjugating enzyme activity;1.83796210164479e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.86089924547743e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.70363931434359e-09!GO:0003924;GTPase activity;2.90003550896694e-09!GO:0044431;Golgi apparatus part;2.99454742250082e-09!GO:0004842;ubiquitin-protein ligase activity;3.61746176534255e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.71071305132179e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.71071305132179e-09!GO:0048519;negative regulation of biological process;4.06520524890055e-09!GO:0003712;transcription cofactor activity;4.07418277727622e-09!GO:0009141;nucleoside triphosphate metabolic process;4.23355951717756e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.91613414973676e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.91613414973676e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.38370850053427e-09!GO:0030120;vesicle coat;7.38370850053427e-09!GO:0030662;coated vesicle membrane;7.38370850053427e-09!GO:0016887;ATPase activity;7.38370850053427e-09!GO:0015986;ATP synthesis coupled proton transport;7.38370850053427e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.38370850053427e-09!GO:0005788;endoplasmic reticulum lumen;7.59095845343027e-09!GO:0006413;translational initiation;7.63805498258852e-09!GO:0006913;nucleocytoplasmic transport;9.41656580849793e-09!GO:0006888;ER to Golgi vesicle-mediated transport;9.63505158959379e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.63505158959379e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.63505158959379e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.00326206306809e-08!GO:0019787;small conjugating protein ligase activity;1.04280411444056e-08!GO:0009056;catabolic process;1.65215049300495e-08!GO:0005524;ATP binding;1.75676203730723e-08!GO:0051169;nuclear transport;1.81392259794182e-08!GO:0032559;adenyl ribonucleotide binding;2.3863864285172e-08!GO:0042623;ATPase activity, coupled;3.04854413923962e-08!GO:0030554;adenyl nucleotide binding;3.17717157587345e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.33074467905005e-08!GO:0043069;negative regulation of programmed cell death;3.45747610323056e-08!GO:0005773;vacuole;3.55631977771808e-08!GO:0019829;cation-transporting ATPase activity;3.81174989257915e-08!GO:0006446;regulation of translational initiation;3.81174989257915e-08!GO:0006916;anti-apoptosis;4.53445803398525e-08!GO:0022402;cell cycle process;4.55382971296128e-08!GO:0043067;regulation of programmed cell death;4.67914254228124e-08!GO:0005768;endosome;5.16103686825109e-08!GO:0046034;ATP metabolic process;5.36975608806206e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.38127422540315e-08!GO:0043687;post-translational protein modification;5.46989728710666e-08!GO:0048475;coated membrane;5.67441094759457e-08!GO:0030117;membrane coat;5.67441094759457e-08!GO:0009060;aerobic respiration;5.90194469179784e-08!GO:0042981;regulation of apoptosis;5.98121139036401e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.4266269739116e-08!GO:0043066;negative regulation of apoptosis;7.52973541272202e-08!GO:0016881;acid-amino acid ligase activity;7.98625019137727e-08!GO:0008565;protein transporter activity;8.02261973249041e-08!GO:0006754;ATP biosynthetic process;1.2360079529338e-07!GO:0006753;nucleoside phosphate metabolic process;1.2360079529338e-07!GO:0017038;protein import;1.26993900305221e-07!GO:0051188;cofactor biosynthetic process;1.54567535693011e-07!GO:0006461;protein complex assembly;1.60577190826538e-07!GO:0051246;regulation of protein metabolic process;1.62565474141373e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.80774061030672e-07!GO:0006091;generation of precursor metabolites and energy;2.54378672878967e-07!GO:0005635;nuclear envelope;2.56121316819601e-07!GO:0016604;nuclear body;3.30882789229623e-07!GO:0045333;cellular respiration;3.58446744488382e-07!GO:0044453;nuclear membrane part;3.87939291712602e-07!GO:0000278;mitotic cell cycle;3.93696544944956e-07!GO:0009117;nucleotide metabolic process;3.96260800927007e-07!GO:0000323;lytic vacuole;4.2413152783201e-07!GO:0005764;lysosome;4.2413152783201e-07!GO:0006399;tRNA metabolic process;5.00416338853838e-07!GO:0006364;rRNA processing;5.16918576511461e-07!GO:0016072;rRNA metabolic process;5.3152580013173e-07!GO:0031988;membrane-bound vesicle;5.38437089543956e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.7241669703072e-07!GO:0031965;nuclear membrane;6.02805213425858e-07!GO:0000139;Golgi membrane;6.07927184624839e-07!GO:0016787;hydrolase activity;6.7958608811485e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.30389163903547e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.01378404395741e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.14183747018877e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.55830228519752e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.55830228519752e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.55830228519752e-06!GO:0005798;Golgi-associated vesicle;2.026554841302e-06!GO:0051187;cofactor catabolic process;2.04052890825478e-06!GO:0006099;tricarboxylic acid cycle;2.08845615961368e-06!GO:0046356;acetyl-CoA catabolic process;2.08845615961368e-06!GO:0048522;positive regulation of cellular process;2.53158687112967e-06!GO:0051726;regulation of cell cycle;2.61293828243495e-06!GO:0051789;response to protein stimulus;2.64235824643194e-06!GO:0006986;response to unfolded protein;2.64235824643194e-06!GO:0043038;amino acid activation;2.96012064157701e-06!GO:0006418;tRNA aminoacylation for protein translation;2.96012064157701e-06!GO:0043039;tRNA aminoacylation;2.96012064157701e-06!GO:0006974;response to DNA damage stimulus;3.14058946567697e-06!GO:0000074;regulation of progression through cell cycle;3.39498089541469e-06!GO:0045259;proton-transporting ATP synthase complex;3.91338116659004e-06!GO:0005770;late endosome;4.11908915013129e-06!GO:0007005;mitochondrion organization and biogenesis;4.46743817936665e-06!GO:0065002;intracellular protein transport across a membrane;5.21020559946828e-06!GO:0044440;endosomal part;5.2932790025549e-06!GO:0010008;endosome membrane;5.2932790025549e-06!GO:0009109;coenzyme catabolic process;5.59857412792367e-06!GO:0006752;group transfer coenzyme metabolic process;5.92581326436393e-06!GO:0031982;vesicle;6.20498462514171e-06!GO:0008361;regulation of cell size;6.78006977200527e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;7.61693316631076e-06!GO:0016049;cell growth;7.74132244152807e-06!GO:0031410;cytoplasmic vesicle;7.91925116455345e-06!GO:0001558;regulation of cell growth;7.92856387991034e-06!GO:0006084;acetyl-CoA metabolic process;8.01985901150279e-06!GO:0004298;threonine endopeptidase activity;8.06647645331575e-06!GO:0008654;phospholipid biosynthetic process;8.91168919139427e-06!GO:0009108;coenzyme biosynthetic process;9.33060306535117e-06!GO:0031968;organelle outer membrane;9.9313642765269e-06!GO:0005525;GTP binding;1.01199190087081e-05!GO:0045454;cell redox homeostasis;1.08621343203143e-05!GO:0019867;outer membrane;1.13218643436149e-05!GO:0065004;protein-DNA complex assembly;1.20631184587221e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.22166457828956e-05!GO:0016853;isomerase activity;1.2298187965755e-05!GO:0016567;protein ubiquitination;1.23219618372638e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.29836101339899e-05!GO:0032446;protein modification by small protein conjugation;1.32145147843585e-05!GO:0016607;nuclear speck;1.3415318356704e-05!GO:0005643;nuclear pore;1.72912060383532e-05!GO:0031252;leading edge;1.82338363769098e-05!GO:0008026;ATP-dependent helicase activity;1.84566829955661e-05!GO:0006323;DNA packaging;1.90356436783115e-05!GO:0003714;transcription corepressor activity;2.06506631473819e-05!GO:0004386;helicase activity;2.15273066390203e-05!GO:0006366;transcription from RNA polymerase II promoter;2.51397847445133e-05!GO:0005762;mitochondrial large ribosomal subunit;2.84299478197795e-05!GO:0000315;organellar large ribosomal subunit;2.84299478197795e-05!GO:0016740;transferase activity;3.83577338937344e-05!GO:0006281;DNA repair;4.35313116856542e-05!GO:0006613;cotranslational protein targeting to membrane;4.4788891993064e-05!GO:0030867;rough endoplasmic reticulum membrane;4.77853425039204e-05!GO:0005905;coated pit;4.8445248409643e-05!GO:0005741;mitochondrial outer membrane;5.33047537820909e-05!GO:0051170;nuclear import;5.33763419681429e-05!GO:0000151;ubiquitin ligase complex;5.39109894377331e-05!GO:0032561;guanyl ribonucleotide binding;6.08387332310396e-05!GO:0019001;guanyl nucleotide binding;6.08387332310396e-05!GO:0044262;cellular carbohydrate metabolic process;6.24925135528187e-05!GO:0006793;phosphorus metabolic process;6.37527080983412e-05!GO:0006796;phosphate metabolic process;6.37527080983412e-05!GO:0046930;pore complex;6.40984005602608e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.44245768571857e-05!GO:0015399;primary active transmembrane transporter activity;6.44245768571857e-05!GO:0006606;protein import into nucleus;6.83436979059765e-05!GO:0019843;rRNA binding;7.23858502171457e-05!GO:0009719;response to endogenous stimulus;7.7687998664176e-05!GO:0016310;phosphorylation;7.7687998664176e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.8318041505088e-05!GO:0051276;chromosome organization and biogenesis;8.01831149172378e-05!GO:0006334;nucleosome assembly;8.5009048011314e-05!GO:0016859;cis-trans isomerase activity;8.5009048011314e-05!GO:0030133;transport vesicle;9.33001421199406e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000105084083590719!GO:0016564;transcription repressor activity;0.000107107956196631!GO:0016779;nucleotidyltransferase activity;0.000109743493691546!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000110639521841089!GO:0006333;chromatin assembly or disassembly;0.00012547200151118!GO:0043623;cellular protein complex assembly;0.000127793944666594!GO:0007243;protein kinase cascade;0.000128358528849903!GO:0005667;transcription factor complex;0.000136733708026186!GO:0046474;glycerophospholipid biosynthetic process;0.000141756630087106!GO:0030029;actin filament-based process;0.000142959652584171!GO:0003697;single-stranded DNA binding;0.000154469033070424!GO:0005048;signal sequence binding;0.000159564459692486!GO:0000245;spliceosome assembly;0.00018298588499966!GO:0015980;energy derivation by oxidation of organic compounds;0.000219321749025432!GO:0048518;positive regulation of biological process;0.000219636205401452!GO:0045786;negative regulation of progression through cell cycle;0.000253712876445177!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000258938826367351!GO:0006403;RNA localization;0.000266990103446514!GO:0003713;transcription coactivator activity;0.00026728354925862!GO:0050657;nucleic acid transport;0.000274658156402946!GO:0051236;establishment of RNA localization;0.000274658156402946!GO:0050658;RNA transport;0.000274658156402946!GO:0000087;M phase of mitotic cell cycle;0.000290830350243088!GO:0031324;negative regulation of cellular metabolic process;0.000293411996410147!GO:0007067;mitosis;0.000306622569123349!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000320321600658768!GO:0030663;COPI coated vesicle membrane;0.000343069916825131!GO:0030126;COPI vesicle coat;0.000343069916825131!GO:0030176;integral to endoplasmic reticulum membrane;0.000352496832896737!GO:0000314;organellar small ribosomal subunit;0.000364850305626418!GO:0005763;mitochondrial small ribosomal subunit;0.000364850305626418!GO:0009165;nucleotide biosynthetic process;0.000401215842975711!GO:0030659;cytoplasmic vesicle membrane;0.000414851406543704!GO:0003724;RNA helicase activity;0.000415823939709515!GO:0005769;early endosome;0.000416429410971324!GO:0006612;protein targeting to membrane;0.000422062685615373!GO:0031497;chromatin assembly;0.000423688040988344!GO:0005885;Arp2/3 protein complex;0.000424283953502855!GO:0040008;regulation of growth;0.000471184135224927!GO:0022403;cell cycle phase;0.000471900505948923!GO:0016044;membrane organization and biogenesis;0.000476611662792967!GO:0006950;response to stress;0.000500210709819271!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000507867645019073!GO:0065009;regulation of a molecular function;0.000512626191491341!GO:0009967;positive regulation of signal transduction;0.00051891385419642!GO:0043492;ATPase activity, coupled to movement of substances;0.000521776987299594!GO:0043021;ribonucleoprotein binding;0.000525526496892925!GO:0006260;DNA replication;0.000526568689816426!GO:0006118;electron transport;0.000566475467176752!GO:0030658;transport vesicle membrane;0.000600291057370174!GO:0006414;translational elongation;0.000606954459232302!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000607419744673858!GO:0046489;phosphoinositide biosynthetic process;0.000628687785623078!GO:0043566;structure-specific DNA binding;0.000680129405349679!GO:0005694;chromosome;0.000703717396581165!GO:0016563;transcription activator activity;0.000753996745509894!GO:0000785;chromatin;0.000777507473331957!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0007899929784859!GO:0030137;COPI-coated vesicle;0.000794669145078806!GO:0043284;biopolymer biosynthetic process;0.00082674037843708!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000864818087121471!GO:0044433;cytoplasmic vesicle part;0.000955764209575771!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000975435903086818!GO:0051427;hormone receptor binding;0.00100656719900272!GO:0051920;peroxiredoxin activity;0.00104740870703056!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00115568278112358!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00118786068112924!GO:0009892;negative regulation of metabolic process;0.0011914328393395!GO:0043681;protein import into mitochondrion;0.00119219043191116!GO:0008632;apoptotic program;0.00124366880977239!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00136015780275115!GO:0006891;intra-Golgi vesicle-mediated transport;0.00142263942042069!GO:0003676;nucleic acid binding;0.00145275025001429!GO:0042802;identical protein binding;0.00149174393833512!GO:0007010;cytoskeleton organization and biogenesis;0.00149174393833512!GO:0008250;oligosaccharyl transferase complex;0.00151084956023965!GO:0004576;oligosaccharyl transferase activity;0.00151084956023965!GO:0044427;chromosomal part;0.00156380478584411!GO:0022890;inorganic cation transmembrane transporter activity;0.00157369504167679!GO:0031072;heat shock protein binding;0.0015987119901876!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00166727892786077!GO:0006626;protein targeting to mitochondrion;0.00173993946605949!GO:0015630;microtubule cytoskeleton;0.00177206232062571!GO:0046467;membrane lipid biosynthetic process;0.00179518369895175!GO:0030660;Golgi-associated vesicle membrane;0.00189382795575148!GO:0035257;nuclear hormone receptor binding;0.00189579147513989!GO:0012506;vesicle membrane;0.00190565467082437!GO:0008047;enzyme activator activity;0.00194587000300051!GO:0045792;negative regulation of cell size;0.00197241398316069!GO:0030308;negative regulation of cell growth;0.00197241398316069!GO:0003899;DNA-directed RNA polymerase activity;0.0020984821421165!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0020984821421165!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0020984821421165!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0020984821421165!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00215329145290968!GO:0005791;rough endoplasmic reticulum;0.00226621518086791!GO:0008610;lipid biosynthetic process;0.00229159371152115!GO:0030118;clathrin coat;0.00265666110601109!GO:0005774;vacuolar membrane;0.00280219822476857!GO:0016568;chromatin modification;0.00286177080165715!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00286233531789515!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00293582994636363!GO:0007264;small GTPase mediated signal transduction;0.00293582994636363!GO:0018196;peptidyl-asparagine modification;0.00293582994636363!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00293582994636363!GO:0007006;mitochondrial membrane organization and biogenesis;0.00302176120591221!GO:0019899;enzyme binding;0.00304267006851764!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00304598010488306!GO:0048468;cell development;0.00310715614057813!GO:0051028;mRNA transport;0.00311452304208426!GO:0051301;cell division;0.0032080070340054!GO:0030132;clathrin coat of coated pit;0.00324066442416933!GO:0048487;beta-tubulin binding;0.0034917933963938!GO:0048471;perinuclear region of cytoplasm;0.0035003068740022!GO:0006497;protein amino acid lipidation;0.00366211673871514!GO:0008092;cytoskeletal protein binding;0.00368491534008338!GO:0001666;response to hypoxia;0.00408063665963803!GO:0030134;ER to Golgi transport vesicle;0.00413921728194407!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00414453316899634!GO:0008243;plasminogen activator activity;0.00428846900696168!GO:0006595;polyamine metabolic process;0.00437027329647816!GO:0016197;endosome transport;0.00447231662247698!GO:0008186;RNA-dependent ATPase activity;0.00473042479154541!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00478878117128971!GO:0015002;heme-copper terminal oxidase activity;0.00478878117128971!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00478878117128971!GO:0004129;cytochrome-c oxidase activity;0.00478878117128971!GO:0006509;membrane protein ectodomain proteolysis;0.00487692955936263!GO:0033619;membrane protein proteolysis;0.00487692955936263!GO:0006650;glycerophospholipid metabolic process;0.0049059546583971!GO:0048500;signal recognition particle;0.00491180830041918!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00491180830041918!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00491180830041918!GO:0051168;nuclear export;0.00501145910556691!GO:0043433;negative regulation of transcription factor activity;0.00501381657409206!GO:0030127;COPII vesicle coat;0.00518215999194326!GO:0012507;ER to Golgi transport vesicle membrane;0.00518215999194326!GO:0030041;actin filament polymerization;0.00527416601818418!GO:0017166;vinculin binding;0.00528643630727412!GO:0045045;secretory pathway;0.00528643630727412!GO:0051329;interphase of mitotic cell cycle;0.00544013072845199!GO:0030027;lamellipodium;0.00556871737023274!GO:0007033;vacuole organization and biogenesis;0.00567733787512453!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00567733787512453!GO:0046519;sphingoid metabolic process;0.00616011105590507!GO:0007040;lysosome organization and biogenesis;0.00625454708683029!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0064955924966786!GO:0006082;organic acid metabolic process;0.00653742636389645!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00661710285667598!GO:0044437;vacuolar part;0.00676327694583266!GO:0008139;nuclear localization sequence binding;0.00683697923257214!GO:0006506;GPI anchor biosynthetic process;0.00695574967166747!GO:0015992;proton transport;0.00723850366640502!GO:0019752;carboxylic acid metabolic process;0.00730344086331495!GO:0030125;clathrin vesicle coat;0.00731093336732438!GO:0030665;clathrin coated vesicle membrane;0.00731093336732438!GO:0006818;hydrogen transport;0.00779801739373145!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00802912772099182!GO:0006839;mitochondrial transport;0.008782795270448!GO:0051540;metal cluster binding;0.00886779830837416!GO:0051536;iron-sulfur cluster binding;0.00886779830837416!GO:0042158;lipoprotein biosynthetic process;0.00920242656344357!GO:0030880;RNA polymerase complex;0.00924152574373284!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00924152574373284!GO:0003746;translation elongation factor activity;0.00952662800792358!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00965825004380481!GO:0031902;late endosome membrane;0.00978999040262326!GO:0005765;lysosomal membrane;0.00981514273844375!GO:0003729;mRNA binding;0.00985512559431952!GO:0008154;actin polymerization and/or depolymerization;0.0103223329745522!GO:0004004;ATP-dependent RNA helicase activity;0.0103311369624578!GO:0051325;interphase;0.0104903792638345!GO:0005813;centrosome;0.0104903792638345!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.010531462980151!GO:0051087;chaperone binding;0.0105340656216736!GO:0004177;aminopeptidase activity;0.0106703011488116!GO:0045926;negative regulation of growth;0.0106703011488116!GO:0006778;porphyrin metabolic process;0.0106740747846606!GO:0033013;tetrapyrrole metabolic process;0.0106740747846606!GO:0046483;heterocycle metabolic process;0.0106740747846606!GO:0045941;positive regulation of transcription;0.0107861870033314!GO:0008180;signalosome;0.0108312088247545!GO:0003756;protein disulfide isomerase activity;0.0108312088247545!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0108312088247545!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0109292697799772!GO:0030119;AP-type membrane coat adaptor complex;0.0109901574370455!GO:0051252;regulation of RNA metabolic process;0.0110218172973933!GO:0005869;dynactin complex;0.0110764625042458!GO:0006505;GPI anchor metabolic process;0.0111574291169821!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0114596978778937!GO:0045047;protein targeting to ER;0.0114596978778937!GO:0006401;RNA catabolic process;0.011980076883576!GO:0016070;RNA metabolic process;0.0120503194435809!GO:0001726;ruffle;0.0120547558246352!GO:0005862;muscle thin filament tropomyosin;0.0127323544820349!GO:0045893;positive regulation of transcription, DNA-dependent;0.0129346918449622!GO:0050811;GABA receptor binding;0.0133371695614121!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0141890391910105!GO:0008312;7S RNA binding;0.0142606911073065!GO:0005815;microtubule organizing center;0.014445824781383!GO:0006402;mRNA catabolic process;0.0145985421134264!GO:0005684;U2-dependent spliceosome;0.0152670538182821!GO:0000059;protein import into nucleus, docking;0.0152967970798443!GO:0016126;sterol biosynthetic process;0.015337371664854!GO:0006672;ceramide metabolic process;0.015337371664854!GO:0006383;transcription from RNA polymerase III promoter;0.0153458263123017!GO:0022408;negative regulation of cell-cell adhesion;0.0153458263123017!GO:0000786;nucleosome;0.0154082840324973!GO:0000030;mannosyltransferase activity;0.0154082840324973!GO:0006979;response to oxidative stress;0.0155261278946309!GO:0031301;integral to organelle membrane;0.0157472479671024!GO:0008283;cell proliferation;0.0158273472471664!GO:0006354;RNA elongation;0.0158273472471664!GO:0050790;regulation of catalytic activity;0.0158947641959237!GO:0044452;nucleolar part;0.0161346243850323!GO:0006007;glucose catabolic process;0.0164615167778785!GO:0016272;prefoldin complex;0.016517298032597!GO:0015631;tubulin binding;0.0167142181340247!GO:0000279;M phase;0.016724352928806!GO:0007034;vacuolar transport;0.0167880971710901!GO:0031543;peptidyl-proline dioxygenase activity;0.0170699655933119!GO:0030145;manganese ion binding;0.0171141636300935!GO:0031418;L-ascorbic acid binding;0.0173046720664725!GO:0006693;prostaglandin metabolic process;0.0173046720664725!GO:0006692;prostanoid metabolic process;0.0173046720664725!GO:0030384;phosphoinositide metabolic process;0.0173759255578092!GO:0030131;clathrin adaptor complex;0.0182375721047987!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0182924909708536!GO:0000428;DNA-directed RNA polymerase complex;0.0182924909708536!GO:0042168;heme metabolic process;0.0183455017885627!GO:0006740;NADPH regeneration;0.0187081647075695!GO:0006098;pentose-phosphate shunt;0.0187081647075695!GO:0007050;cell cycle arrest;0.0189975064934307!GO:0033673;negative regulation of kinase activity;0.0189975064934307!GO:0006469;negative regulation of protein kinase activity;0.0189975064934307!GO:0006897;endocytosis;0.020023952741978!GO:0010324;membrane invagination;0.020023952741978!GO:0032940;secretion by cell;0.0204676818192023!GO:0030521;androgen receptor signaling pathway;0.0206975034092022!GO:0016481;negative regulation of transcription;0.020739665120254!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0208556472982439!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0208556472982439!GO:0035258;steroid hormone receptor binding;0.0210189638112981!GO:0043022;ribosome binding;0.0212926863401603!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0213444434829228!GO:0006417;regulation of translation;0.0214094543228706!GO:0005096;GTPase activator activity;0.0214094543228706!GO:0043488;regulation of mRNA stability;0.021896772564828!GO:0043487;regulation of RNA stability;0.021896772564828!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0219675425975681!GO:0000082;G1/S transition of mitotic cell cycle;0.022284438140673!GO:0016860;intramolecular oxidoreductase activity;0.022284438140673!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0226140100639195!GO:0001953;negative regulation of cell-matrix adhesion;0.0231754138381836!GO:0007162;negative regulation of cell adhesion;0.0232852105516605!GO:0051098;regulation of binding;0.0235064582958195!GO:0051348;negative regulation of transferase activity;0.0237660715377196!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0241055034918591!GO:0006458;'de novo' protein folding;0.0243881442399508!GO:0051084;'de novo' posttranslational protein folding;0.0243881442399508!GO:0006984;ER-nuclear signaling pathway;0.0246407471605246!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0247468898298485!GO:0051235;maintenance of localization;0.0248157826216565!GO:0030433;ER-associated protein catabolic process;0.0252324388349936!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0252324388349936!GO:0003711;transcription elongation regulator activity;0.0252917905306467!GO:0031529;ruffle organization and biogenesis;0.0257052869273474!GO:0035035;histone acetyltransferase binding;0.0257137292925992!GO:0005100;Rho GTPase activator activity;0.0260558957010082!GO:0019798;procollagen-proline dioxygenase activity;0.0260731009091719!GO:0005975;carbohydrate metabolic process;0.0266723321763935!GO:0008637;apoptotic mitochondrial changes;0.026725448284287!GO:0046870;cadmium ion binding;0.0268016778943287!GO:0005832;chaperonin-containing T-complex;0.0271947039269291!GO:0032507;maintenance of cellular protein localization;0.0272430440531358!GO:0000049;tRNA binding;0.0272975923643444!GO:0007030;Golgi organization and biogenesis;0.0280124134852294!GO:0050662;coenzyme binding;0.0280124134852294!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0283878035407959!GO:0051059;NF-kappaB binding;0.0285737749814853!GO:0046426;negative regulation of JAK-STAT cascade;0.0286593651739611!GO:0007041;lysosomal transport;0.028867899251604!GO:0031625;ubiquitin protein ligase binding;0.0290989396919675!GO:0051287;NAD binding;0.0297357339078428!GO:0050794;regulation of cellular process;0.0298536642870771!GO:0030833;regulation of actin filament polymerization;0.0298536642870771!GO:0006779;porphyrin biosynthetic process;0.0299540667846702!GO:0033014;tetrapyrrole biosynthetic process;0.0299540667846702!GO:0051101;regulation of DNA binding;0.0302233965212647!GO:0006289;nucleotide-excision repair;0.0307030114751056!GO:0031272;regulation of pseudopodium formation;0.0307179349224892!GO:0031269;pseudopodium formation;0.0307179349224892!GO:0031344;regulation of cell projection organization and biogenesis;0.0307179349224892!GO:0031268;pseudopodium organization and biogenesis;0.0307179349224892!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0307179349224892!GO:0031274;positive regulation of pseudopodium formation;0.0307179349224892!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0309218940012825!GO:0022415;viral reproductive process;0.0316794111961008!GO:0008538;proteasome activator activity;0.0320175791387391!GO:0016363;nuclear matrix;0.0320612791922339!GO:0008033;tRNA processing;0.0320931907224872!GO:0045936;negative regulation of phosphate metabolic process;0.0328659789393112!GO:0031901;early endosome membrane;0.0328659789393112!GO:0005819;spindle;0.0330939795580916!GO:0051128;regulation of cellular component organization and biogenesis;0.0332654285611033!GO:0009112;nucleobase metabolic process;0.034104203860782!GO:0022407;regulation of cell-cell adhesion;0.034961548990404!GO:0051539;4 iron, 4 sulfur cluster binding;0.0355213432800094!GO:0000209;protein polyubiquitination;0.0357757566840927!GO:0048144;fibroblast proliferation;0.0360715632988325!GO:0048145;regulation of fibroblast proliferation;0.0360715632988325!GO:0009889;regulation of biosynthetic process;0.0362584703671294!GO:0005801;cis-Golgi network;0.0368483313469575!GO:0045185;maintenance of protein localization;0.0375743498342418!GO:0005092;GDP-dissociation inhibitor activity;0.0382367054286142!GO:0043065;positive regulation of apoptosis;0.0382367054286142!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0382367054286142!GO:0031326;regulation of cellular biosynthetic process;0.0393176163822364!GO:0008484;sulfuric ester hydrolase activity;0.0395183857595592!GO:0050178;phenylpyruvate tautomerase activity;0.0395374140192169!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0395374140192169!GO:0051272;positive regulation of cell motility;0.0395374140192169!GO:0040017;positive regulation of locomotion;0.0395374140192169!GO:0032981;mitochondrial respiratory chain complex I assembly;0.039652248305252!GO:0010257;NADH dehydrogenase complex assembly;0.039652248305252!GO:0033108;mitochondrial respiratory chain complex assembly;0.039652248305252!GO:0019318;hexose metabolic process;0.039775389331321!GO:0006643;membrane lipid metabolic process;0.0400943967119451!GO:0006892;post-Golgi vesicle-mediated transport;0.0407622437607331!GO:0008147;structural constituent of bone;0.0410798512591806!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0416566724470653!GO:0006807;nitrogen compound metabolic process;0.0420295743582477!GO:0005996;monosaccharide metabolic process;0.0420401798735205!GO:0043068;positive regulation of programmed cell death;0.0424473285791512!GO:0031589;cell-substrate adhesion;0.0425672443352175!GO:0001516;prostaglandin biosynthetic process;0.0425672443352175!GO:0046457;prostanoid biosynthetic process;0.0425672443352175!GO:0000339;RNA cap binding;0.0425672443352175!GO:0007160;cell-matrix adhesion;0.0432675706282432!GO:0030911;TPR domain binding;0.0435933462212775!GO:0046822;regulation of nucleocytoplasmic transport;0.0436875423136434!GO:0006405;RNA export from nucleus;0.0442032272525127!GO:0016408;C-acyltransferase activity;0.044364921342416!GO:0016584;nucleosome positioning;0.0446590124423278!GO:0009303;rRNA transcription;0.0448286337752972!GO:0033239;negative regulation of amine metabolic process;0.0466745468331045!GO:0045763;negative regulation of amino acid metabolic process;0.0466745468331045!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0466745468331045!GO:0007242;intracellular signaling cascade;0.0472453796188055!GO:0051651;maintenance of cellular localization;0.0474021907298976!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0475927505483531!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0475927505483531!GO:0030149;sphingolipid catabolic process;0.048095185795112!GO:0005507;copper ion binding;0.0483388868590534!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.048676980758789!GO:0006635;fatty acid beta-oxidation;0.0487471723649913
|sample_id=11366
|sample_id=11366
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=subclavian artery
|sample_tissue=subclavian artery
|top_motifs=PPARG:3.3172840694;HMX1:2.1521736233;ALX4:1.71257092573;NKX2-2,8:1.65565295019;FOXL1:1.52319774365;HES1:1.48396243714;NKX3-1:1.46849881401;GTF2A1,2:1.33874952952;ZBTB6:1.3294068456;RXR{A,B,G}:1.32703662207;EN1,2:1.25679492636;UFEwm:1.2455622524;ONECUT1,2:1.23838814158;GCM1,2:1.23400245708;NFE2L1:1.21221730256;SMAD1..7,9:1.21106250998;GLI1..3:1.1943677289;ATF6:1.18676272966;TLX1..3_NFIC{dimer}:1.17874497157;SPZ1:1.15505177345;HSF1,2:1.10137347155;TBP:1.06821234888;ZNF238:1.06220308919;HIF1A:1.03138164103;XBP1:1.01356234016;IKZF1:1.0121760841;ESRRA:1.00141599293;TFAP4:0.975346644583;HOX{A5,B5}:0.963905552904;NFATC1..3:0.95933607504;POU3F1..4:0.958578473315;KLF4:0.925367198293;TP53:0.905047208107;ZIC1..3:0.887230989324;TEAD1:0.882866908308;MAFB:0.872029890471;CDC5L:0.858803744191;HAND1,2:0.775835857765;GZF1:0.707585018715;HOX{A6,A7,B6,B7}:0.702196264306;NFIX:0.678644717236;EVI1:0.643666954006;FOX{I1,J2}:0.641535692713;NR3C1:0.63667437204;POU6F1:0.621694098921;EBF1:0.581616545839;TFCP2:0.551281919446;LHX3,4:0.534348767641;PAX5:0.530170009549;ZNF148:0.499893651234;HMGA1,2:0.498418290488;TAL1_TCF{3,4,12}:0.469417083005;ESR1:0.434618494658;SRF:0.433593986414;NFE2L2:0.425558669631;POU5F1:0.409327471087;MTF1:0.393333991533;RXRA_VDR{dimer}:0.390237525787;REST:0.339705118441;TBX4,5:0.334645308824;ARID5B:0.322518182073;MYBL2:0.320710539167;CRX:0.306812567363;PBX1:0.303172677905;FOS_FOS{B,L1}_JUN{B,D}:0.28255895609;NR6A1:0.263871065778;ZNF423:0.261299794465;MTE{core}:0.259524974382;GTF2I:0.251446575594;POU2F1..3:0.24514288243;BACH2:0.235056199869;HOXA9_MEIS1:0.230198694754;JUN:0.198312219586;VSX1,2:0.1937909592;ALX1:0.188514919125;NKX3-2:0.187858282555;FOSL2:0.186426998436;HLF:0.183697528641;STAT5{A,B}:0.177721042642;NANOG{mouse}:0.153351772221;POU1F1:0.151535920643;HIC1:0.149620515169;TFAP2{A,C}:0.0836021796183;GFI1B:0.082601450827;MYFfamily:0.0817657027811;LMO2:0.0769034476586;HNF1A:0.0601166304063;XCPE1{core}:0.0332504062994;TFAP2B:0.028945380544;SOX17:0.0273942511494;HBP1_HMGB_SSRP1_UBTF:0.0222522131004;NFKB1_REL_RELA:0.0122099376071;LEF1_TCF7_TCF7L1,2:0.0112565016551;PATZ1:0.00814742884387;PAX1,9:0.00383265778439;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0019264685305;AR:-0.0279611953366;NHLH1,2:-0.0298156334614;PRDM1:-0.060079773372;ADNP_IRX_SIX_ZHX:-0.06822841701;FOXD3:-0.070894662715;STAT2,4,6:-0.0778000779145;MYB:-0.0841496034382;SOX{8,9,10}:-0.114714118416;YY1:-0.121157864744;CEBPA,B_DDIT3:-0.142321075526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145134603167;IRF1,2:-0.16229045411;MZF1:-0.17182663628;MEF2{A,B,C,D}:-0.180995720659;GATA4:-0.181691211955;ETS1,2:-0.220805035466;RFX1:-0.225800340057;TOPORS:-0.236104759923;AIRE:-0.238828888245;MAZ:-0.251662678147;NFE2:-0.267061667154;ZNF384:-0.268000177593;RUNX1..3:-0.290823929772;IRF7:-0.292494952243;PAX8:-0.294629602797;NFIL3:-0.313860437811;SNAI1..3:-0.318636006201;ELK1,4_GABP{A,B1}:-0.323472074285;PAX3,7:-0.340944108266;HOX{A4,D4}:-0.345967543356;FOXQ1:-0.347348361835;RREB1:-0.350947689883;EP300:-0.378651566176;PRRX1,2:-0.383242058375;SPIB:-0.388544154521;MYOD1:-0.415300455369;HNF4A_NR2F1,2:-0.420140353302;TEF:-0.437963005563;ZEB1:-0.444155267683;ELF1,2,4:-0.456673002116;FOXM1:-0.482091782114;ZNF143:-0.482316054829;SPI1:-0.482672298308;AHR_ARNT_ARNT2:-0.487554464117;GFI1:-0.488230477904;MED-1{core}:-0.513771400205;GATA6:-0.531101274897;NRF1:-0.558072824975;SP1:-0.563189292501;SOX5:-0.568440676012;SOX2:-0.573346693168;NR1H4:-0.581923900117;ZFP161:-0.589447937165;TLX2:-0.595141289455;PAX2:-0.610527723683;TGIF1:-0.620085463764;NR5A1,2:-0.621672008978;IKZF2:-0.626586764356;DMAP1_NCOR{1,2}_SMARC:-0.640764334905;bHLH_family:-0.663107702587;NANOG:-0.683946495477;PITX1..3:-0.685055454656;E2F1..5:-0.69128859757;NKX2-1,4:-0.707118211367;EGR1..3:-0.779762413987;ATF2:-0.780511406211;DBP:-0.835882501361;FOX{D1,D2}:-0.83970958652;FOXP3:-0.848071631926;FOXO1,3,4:-0.850640397745;FOXN1:-0.860841386433;T:-0.86340016443;ATF5_CREB3:-0.88835325369;CREB1:-0.907550903134;PAX6:-0.922421973725;CDX1,2,4:-0.929958615004;ZBTB16:-0.93906177919;RORA:-1.04240140574;OCT4_SOX2{dimer}:-1.04966693718;ATF4:-1.05466256329;NKX2-3_NKX2-5:-1.06353736538;SREBF1,2:-1.07294863488;NFY{A,B,C}:-1.08443059655;FOXP1:-1.11221150585;TFDP1:-1.1180841474;BPTF:-1.12426144713;PAX4:-1.17909398359;CUX2:-1.22097534221;PDX1:-1.26765748103;FOX{F1,F2,J1}:-1.31996216903;NKX6-1,2:-1.39211024633;RFX2..5_RFXANK_RFXAP:-1.39838029196;FOXA2:-1.57469242306;STAT1,3:-1.7076934021;BREu{core}:-1.75916054723;RBPJ:-2.3674892714
|top_motifs=PPARG:3.3172840694;HMX1:2.1521736233;ALX4:1.71257092573;NKX2-2,8:1.65565295019;FOXL1:1.52319774365;HES1:1.48396243714;NKX3-1:1.46849881401;GTF2A1,2:1.33874952952;ZBTB6:1.3294068456;RXR{A,B,G}:1.32703662207;EN1,2:1.25679492636;UFEwm:1.2455622524;ONECUT1,2:1.23838814158;GCM1,2:1.23400245708;NFE2L1:1.21221730256;SMAD1..7,9:1.21106250998;GLI1..3:1.1943677289;ATF6:1.18676272966;TLX1..3_NFIC{dimer}:1.17874497157;SPZ1:1.15505177345;HSF1,2:1.10137347155;TBP:1.06821234888;ZNF238:1.06220308919;HIF1A:1.03138164103;XBP1:1.01356234016;IKZF1:1.0121760841;ESRRA:1.00141599293;TFAP4:0.975346644583;HOX{A5,B5}:0.963905552904;NFATC1..3:0.95933607504;POU3F1..4:0.958578473315;KLF4:0.925367198293;TP53:0.905047208107;ZIC1..3:0.887230989324;TEAD1:0.882866908308;MAFB:0.872029890471;CDC5L:0.858803744191;HAND1,2:0.775835857765;GZF1:0.707585018715;HOX{A6,A7,B6,B7}:0.702196264306;NFIX:0.678644717236;EVI1:0.643666954006;FOX{I1,J2}:0.641535692713;NR3C1:0.63667437204;POU6F1:0.621694098921;EBF1:0.581616545839;TFCP2:0.551281919446;LHX3,4:0.534348767641;PAX5:0.530170009549;ZNF148:0.499893651234;HMGA1,2:0.498418290488;TAL1_TCF{3,4,12}:0.469417083005;ESR1:0.434618494658;SRF:0.433593986414;NFE2L2:0.425558669631;POU5F1:0.409327471087;MTF1:0.393333991533;RXRA_VDR{dimer}:0.390237525787;REST:0.339705118441;TBX4,5:0.334645308824;ARID5B:0.322518182073;MYBL2:0.320710539167;CRX:0.306812567363;PBX1:0.303172677905;FOS_FOS{B,L1}_JUN{B,D}:0.28255895609;NR6A1:0.263871065778;ZNF423:0.261299794465;MTE{core}:0.259524974382;GTF2I:0.251446575594;POU2F1..3:0.24514288243;BACH2:0.235056199869;HOXA9_MEIS1:0.230198694754;JUN:0.198312219586;VSX1,2:0.1937909592;ALX1:0.188514919125;NKX3-2:0.187858282555;FOSL2:0.186426998436;HLF:0.183697528641;STAT5{A,B}:0.177721042642;NANOG{mouse}:0.153351772221;POU1F1:0.151535920643;HIC1:0.149620515169;TFAP2{A,C}:0.0836021796183;GFI1B:0.082601450827;MYFfamily:0.0817657027811;LMO2:0.0769034476586;HNF1A:0.0601166304063;XCPE1{core}:0.0332504062994;TFAP2B:0.028945380544;SOX17:0.0273942511494;HBP1_HMGB_SSRP1_UBTF:0.0222522131004;NFKB1_REL_RELA:0.0122099376071;LEF1_TCF7_TCF7L1,2:0.0112565016551;PATZ1:0.00814742884387;PAX1,9:0.00383265778439;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0019264685305;AR:-0.0279611953366;NHLH1,2:-0.0298156334614;PRDM1:-0.060079773372;ADNP_IRX_SIX_ZHX:-0.06822841701;FOXD3:-0.070894662715;STAT2,4,6:-0.0778000779145;MYB:-0.0841496034382;SOX{8,9,10}:-0.114714118416;YY1:-0.121157864744;CEBPA,B_DDIT3:-0.142321075526;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145134603167;IRF1,2:-0.16229045411;MZF1:-0.17182663628;MEF2{A,B,C,D}:-0.180995720659;GATA4:-0.181691211955;ETS1,2:-0.220805035466;RFX1:-0.225800340057;TOPORS:-0.236104759923;AIRE:-0.238828888245;MAZ:-0.251662678147;NFE2:-0.267061667154;ZNF384:-0.268000177593;RUNX1..3:-0.290823929772;IRF7:-0.292494952243;PAX8:-0.294629602797;NFIL3:-0.313860437811;SNAI1..3:-0.318636006201;ELK1,4_GABP{A,B1}:-0.323472074285;PAX3,7:-0.340944108266;HOX{A4,D4}:-0.345967543356;FOXQ1:-0.347348361835;RREB1:-0.350947689883;EP300:-0.378651566176;PRRX1,2:-0.383242058375;SPIB:-0.388544154521;MYOD1:-0.415300455369;HNF4A_NR2F1,2:-0.420140353302;TEF:-0.437963005563;ZEB1:-0.444155267683;ELF1,2,4:-0.456673002116;FOXM1:-0.482091782114;ZNF143:-0.482316054829;SPI1:-0.482672298308;AHR_ARNT_ARNT2:-0.487554464117;GFI1:-0.488230477904;MED-1{core}:-0.513771400205;GATA6:-0.531101274897;NRF1:-0.558072824975;SP1:-0.563189292501;SOX5:-0.568440676012;SOX2:-0.573346693168;NR1H4:-0.581923900117;ZFP161:-0.589447937165;TLX2:-0.595141289455;PAX2:-0.610527723683;TGIF1:-0.620085463764;NR5A1,2:-0.621672008978;IKZF2:-0.626586764356;DMAP1_NCOR{1,2}_SMARC:-0.640764334905;bHLH_family:-0.663107702587;NANOG:-0.683946495477;PITX1..3:-0.685055454656;E2F1..5:-0.69128859757;NKX2-1,4:-0.707118211367;EGR1..3:-0.779762413987;ATF2:-0.780511406211;DBP:-0.835882501361;FOX{D1,D2}:-0.83970958652;FOXP3:-0.848071631926;FOXO1,3,4:-0.850640397745;FOXN1:-0.860841386433;T:-0.86340016443;ATF5_CREB3:-0.88835325369;CREB1:-0.907550903134;PAX6:-0.922421973725;CDX1,2,4:-0.929958615004;ZBTB16:-0.93906177919;RORA:-1.04240140574;OCT4_SOX2{dimer}:-1.04966693718;ATF4:-1.05466256329;NKX2-3_NKX2-5:-1.06353736538;SREBF1,2:-1.07294863488;NFY{A,B,C}:-1.08443059655;FOXP1:-1.11221150585;TFDP1:-1.1180841474;BPTF:-1.12426144713;PAX4:-1.17909398359;CUX2:-1.22097534221;PDX1:-1.26765748103;FOX{F1,F2,J1}:-1.31996216903;NKX6-1,2:-1.39211024633;RFX2..5_RFXANK_RFXAP:-1.39838029196;FOXA2:-1.57469242306;STAT1,3:-1.7076934021;BREu{core}:-1.75916054723;RBPJ:-2.3674892714
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11366-117I7;search_select_hide=table117:FF:11366-117I7
}}
}}

Latest revision as of 17:55, 4 June 2020

Name:Smooth Muscle Cells - Subclavian Artery, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11990
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuesubclavian artery
dev stage21 years old adult
sexmale
age21
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2139
catalog numberCA3010-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005772
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11990 CAGE DRX008502 DRR009374
Accession ID Hg19

Library idBAMCTSS
CNhs11990 DRZ000799 DRZ002184
Accession ID Hg38

Library idBAMCTSS
CNhs11990 DRZ012149 DRZ013534
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005772
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GGTAGC sRNA-Seq DRX037010 DRR041376
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GGTAGC DRZ007018


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.192
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.574
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.304
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.223
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.476
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.374
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.44
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.476
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0265
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.367
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.213
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.121
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.697
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.8
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.211
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.45
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.537
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11990

Jaspar motifP-value
MA0002.20.599
MA0003.10.218
MA0004.10.371
MA0006.10.212
MA0007.10.588
MA0009.10.998
MA0014.10.765
MA0017.10.452
MA0018.21.69792e-4
MA0019.10.443
MA0024.11.26211e-4
MA0025.10.231
MA0027.10.538
MA0028.10.0877
MA0029.10.624
MA0030.10.0766
MA0031.10.0267
MA0035.20.369
MA0038.10.0193
MA0039.20.156
MA0040.10.25
MA0041.10.361
MA0042.10.826
MA0043.12.46773e-4
MA0046.10.458
MA0047.20.811
MA0048.10.54
MA0050.10.531
MA0051.10.634
MA0052.10.263
MA0055.10.547
MA0057.10.203
MA0058.10.275
MA0059.10.289
MA0060.12.15691e-7
MA0061.10.263
MA0062.26.18268e-4
MA0065.20.131
MA0066.10.0497
MA0067.10.00198
MA0068.10.265
MA0069.10.182
MA0070.10.579
MA0071.10.97
MA0072.10.995
MA0073.10.677
MA0074.10.0932
MA0076.10.019
MA0077.10.419
MA0078.10.327
MA0079.20.621
MA0080.22.77558e-4
MA0081.10.0725
MA0083.10.175
MA0084.10.202
MA0087.10.861
MA0088.10.945
MA0090.10.00627
MA0091.10.199
MA0092.10.069
MA0093.10.345
MA0099.20.00906
MA0100.10.086
MA0101.10.826
MA0102.20.087
MA0103.10.85
MA0104.20.382
MA0105.10.03
MA0106.10.116
MA0107.10.94
MA0108.20.00153
MA0111.10.566
MA0112.25.00159e-4
MA0113.10.749
MA0114.10.739
MA0115.10.155
MA0116.10.03
MA0117.10.86
MA0119.10.0142
MA0122.10.877
MA0124.10.0361
MA0125.10.683
MA0131.10.382
MA0135.10.417
MA0136.17.62267e-4
MA0137.20.224
MA0138.20.127
MA0139.10.278
MA0140.10.7
MA0141.10.104
MA0142.10.871
MA0143.10.506
MA0144.10.563
MA0145.10.128
MA0146.10.607
MA0147.10.839
MA0148.10.499
MA0149.10.767
MA0150.10.828
MA0152.10.564
MA0153.10.214
MA0154.10.053
MA0155.10.139
MA0156.10.0138
MA0157.10.241
MA0159.10.0305
MA0160.10.906
MA0162.10.0692
MA0163.13.70027e-4
MA0164.10.505
MA0258.10.0199
MA0259.10.743



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11990

Novel motifP-value
10.229
100.645
1000.973
1010.848
1020.955
1030.0246
1040.443
1050.296
1060.0219
1070.0259
1080.216
1090.0857
110.0694
1100.203
1110.924
1120.369
1130.169
1140.148
1150.0198
1160.0564
1170.546
1180.46
1190.266
120.456
1200.0446
1210.571
1220.217
1230.193
1240.752
1250.319
1260.623
1270.483
1280.0728
1290.727
130.896
1300.907
1310.651
1320.781
1330.394
1340.529
1350.109
1360.982
1370.424
1380.813
1390.126
140.931
1400.878
1410.857
1420.349
1430.0341
1440.821
1450.122
1460.534
1470.0481
1480.0278
1490.0242
150.288
1500.275
1510.325
1520.0332
1530.613
1540.916
1550.242
1560.739
1570.603
1580.033
1590.307
160.046
1600.0727
1610.682
1620.95
1630.703
1640.0792
1650.971
1660.386
1670.985
1680.542
1690.0258
170.166
180.0764
190.0362
20.32
200.563
210.229
220.227
230.0717
240.699
250.517
260.189
270.415
280.258
290.151
30.247
300.543
310.455
324.64691e-5
330.827
340.772
350.324
360.367
370.0619
380.668
390.292
40.956
400.551
410.507
420.549
430.185
440.0418
450.552
460.0809
470.214
480.273
490.482
50.589
500.69
510.636
520.963
530.425
540.432
550.271
560.536
570.461
580.982
590.0256
60.615
600.306
610.868
620.505
630.158
640.44
650.283
660.789
670.0999
680.701
690.183
70.952
700.0567
710.264
720.923
730.0114
740.289
750.223
760.996
770.00402
780.64
790.00175
80.0517
800.715
810.267
820.309
830.298
840.583
850.0168
860.469
870.0347
880.0978
890.00488
90.485
900.593
910.271
920.0995
930.419
940.339
950.181
960.763
970.725
980.932
990.00966



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11990


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000175 (human smooth muscle cell of subclavian artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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