FF:11369-118A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004729 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004729 | ||
|accession_numbers=CAGE;DRX008523;DRR009395;DRZ000820;DRZ002205;DRZ012170;DRZ013555 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037089;DRR041455;DRZ007097 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000189 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor2.CNhs11993.11369-118A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11369-118A1 | |id=FF:11369-118A1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000189 | ||
|is_obsolete= | |||
|library_id=CNhs11993 | |||
|library_id_phase_based=2:CNhs11993 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11369 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GGTAGC.11369 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11369 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GGTAGC.11369 | |||
|name=Tracheal Epithelial Cells, donor2 | |name=Tracheal Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11993,LSID837,release011,COMPLETED | |profile_hcage=CNhs11993,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0624770426886765,0,0.709241787231712,0.252149835378885,0,0,0,0,0,0,0,0,0,0,0.369328045138462,0,0,0.939928379924921,0,0,0,0,0,0.468032590922619,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.987636410805343,0.142776604506424,0,0,0.222795072775063,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.222795072775063,0.38170495510829,0,0,0.125451445561966,0,0,0,0,0,0,0,0,0.478697316350895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.059518755770325,0,0,0,0.00858787206774059,0.219520195385597,0,0.222795072775063,0,0,-0.0980353512377064,0.0461868217683356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.222795072775063,0,0,0.71033026229249,1.13487691058096,0,0,0,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA504-R10a | |rna_catalog_number=CA504-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118A1 | |rna_tube_id=118A1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.GGTAGC | |||
|sample_age=45 | |sample_age=45 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.96521669916481e-211!GO:0005737;cytoplasm;1.56740514307445e-202!GO:0043226;organelle;1.04304819372924e-158!GO:0043229;intracellular organelle;1.98078216483353e-158!GO:0043231;intracellular membrane-bound organelle;2.67319003655528e-145!GO:0043227;membrane-bound organelle;2.67319003655528e-145!GO:0044444;cytoplasmic part;6.17923339798375e-134!GO:0044422;organelle part;3.11294765645994e-127!GO:0044446;intracellular organelle part;1.05362083771867e-125!GO:0032991;macromolecular complex;8.4664792141413e-88!GO:0005515;protein binding;1.65486313947484e-83!GO:0030529;ribonucleoprotein complex;6.79447517218251e-76!GO:0044237;cellular metabolic process;1.33530100721785e-73!GO:0005739;mitochondrion;1.39564757554327e-73!GO:0044238;primary metabolic process;2.39900839106918e-72!GO:0043170;macromolecule metabolic process;8.31151951966432e-61!GO:0043233;organelle lumen;1.70601368853986e-59!GO:0031974;membrane-enclosed lumen;1.70601368853986e-59!GO:0005840;ribosome;6.64587885469842e-55!GO:0019538;protein metabolic process;1.83063332167369e-54!GO:0006412;translation;4.70360412925158e-53!GO:0009058;biosynthetic process;2.74474208138948e-52!GO:0044428;nuclear part;2.12025897718369e-51!GO:0003723;RNA binding;5.5125366994747e-51!GO:0031090;organelle membrane;9.64175450096718e-50!GO:0003735;structural constituent of ribosome;1.48994931155498e-49!GO:0044429;mitochondrial part;2.64654212415557e-49!GO:0044260;cellular macromolecule metabolic process;2.56624278056806e-48!GO:0044267;cellular protein metabolic process;7.05270733043329e-48!GO:0044249;cellular biosynthetic process;1.80898663969496e-47!GO:0043234;protein complex;2.99342579198992e-45!GO:0009059;macromolecule biosynthetic process;9.35034777789202e-44!GO:0016043;cellular component organization and biogenesis;2.8449418979045e-43!GO:0005634;nucleus;4.14679544062274e-43!GO:0005829;cytosol;3.31899866109247e-42!GO:0033279;ribosomal subunit;3.63877536961203e-42!GO:0031967;organelle envelope;6.98179017084405e-42!GO:0031975;envelope;1.80863410542161e-41!GO:0015031;protein transport;4.86032631065343e-40!GO:0033036;macromolecule localization;1.54810016251494e-39!GO:0008104;protein localization;3.9464003579976e-38!GO:0045184;establishment of protein localization;8.72696324609017e-38!GO:0043228;non-membrane-bound organelle;7.42175211292912e-37!GO:0043232;intracellular non-membrane-bound organelle;7.42175211292912e-37!GO:0006396;RNA processing;6.86030157793198e-35!GO:0065003;macromolecular complex assembly;1.4162986275609e-32!GO:0005740;mitochondrial envelope;2.9094880929728e-32!GO:0031981;nuclear lumen;8.5810100318839e-32!GO:0046907;intracellular transport;5.36130552671751e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.99983006716092e-31!GO:0006996;organelle organization and biogenesis;3.44270501954781e-30!GO:0031966;mitochondrial membrane;4.41201436667971e-30!GO:0022607;cellular component assembly;4.25434415893388e-29!GO:0006886;intracellular protein transport;2.42797076496816e-28!GO:0019866;organelle inner membrane;3.34971286699068e-28!GO:0043283;biopolymer metabolic process;1.03388882881167e-27!GO:0005743;mitochondrial inner membrane;6.52563519984077e-27!GO:0016071;mRNA metabolic process;3.77937645712487e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.1054226870454e-25!GO:0044445;cytosolic part;5.3052264610343e-24!GO:0008380;RNA splicing;1.18844788833127e-22!GO:0010467;gene expression;1.30345702092532e-22!GO:0031980;mitochondrial lumen;8.56370333980699e-22!GO:0005759;mitochondrial matrix;8.56370333980699e-22!GO:0015934;large ribosomal subunit;1.16848155178413e-21!GO:0015935;small ribosomal subunit;1.45069812764338e-21!GO:0006397;mRNA processing;1.47604630287594e-21!GO:0051641;cellular localization;9.74462375689756e-21!GO:0006119;oxidative phosphorylation;1.07739575802906e-20!GO:0051649;establishment of cellular localization;1.66955275675775e-20!GO:0044455;mitochondrial membrane part;8.86339179274648e-20!GO:0006259;DNA metabolic process;4.36276595946017e-19!GO:0012505;endomembrane system;6.34141977580545e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.93822527189865e-19!GO:0048770;pigment granule;5.58232766994909e-18!GO:0042470;melanosome;5.58232766994909e-18!GO:0005783;endoplasmic reticulum;9.01553679271212e-18!GO:0016874;ligase activity;1.95180429643031e-17!GO:0000166;nucleotide binding;2.64335862371606e-17!GO:0005654;nucleoplasm;3.02230960597602e-17!GO:0005681;spliceosome;3.0274688070463e-17!GO:0012501;programmed cell death;8.13465171634821e-17!GO:0051186;cofactor metabolic process;1.22406777362653e-16!GO:0006915;apoptosis;1.45353122936134e-16!GO:0006605;protein targeting;2.7033456017955e-16!GO:0005730;nucleolus;3.41345087553144e-16!GO:0007049;cell cycle;4.65550694395872e-16!GO:0006457;protein folding;4.96040789396893e-16!GO:0005746;mitochondrial respiratory chain;5.51250988334603e-16!GO:0016462;pyrophosphatase activity;8.67810110452076e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.1319146674769e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.14407864238915e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.14560733088251e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.37681186478386e-15!GO:0043285;biopolymer catabolic process;1.44595984961227e-15!GO:0043412;biopolymer modification;1.99289565104224e-15!GO:0044265;cellular macromolecule catabolic process;2.75754749801735e-15!GO:0009057;macromolecule catabolic process;3.98373201703835e-15!GO:0008219;cell death;4.20528805223907e-15!GO:0016265;death;4.20528805223907e-15!GO:0005761;mitochondrial ribosome;4.72343943047966e-15!GO:0000313;organellar ribosome;4.72343943047966e-15!GO:0044248;cellular catabolic process;7.58249690473497e-15!GO:0017111;nucleoside-triphosphatase activity;8.0199299139873e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.04322284608269e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.86706383569044e-14!GO:0006464;protein modification process;2.50261771812898e-14!GO:0044432;endoplasmic reticulum part;2.74192042105331e-14!GO:0005794;Golgi apparatus;3.51673403975907e-14!GO:0044451;nucleoplasm part;3.52232436632631e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.79025870737598e-14!GO:0003954;NADH dehydrogenase activity;3.79025870737598e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.79025870737598e-14!GO:0008134;transcription factor binding;5.85783670913207e-14!GO:0022618;protein-RNA complex assembly;1.53538160742281e-13!GO:0006732;coenzyme metabolic process;1.73030431465579e-13!GO:0006512;ubiquitin cycle;3.002042457835e-13!GO:0032553;ribonucleotide binding;4.69073244763747e-13!GO:0032555;purine ribonucleotide binding;4.69073244763747e-13!GO:0017076;purine nucleotide binding;4.69996584337856e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.40140255446283e-13!GO:0030163;protein catabolic process;9.29321606303395e-13!GO:0019941;modification-dependent protein catabolic process;1.09670754064434e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.09670754064434e-12!GO:0044257;cellular protein catabolic process;1.48785860731728e-12!GO:0022402;cell cycle process;1.5175046933078e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.84947149961142e-12!GO:0043687;post-translational protein modification;2.1721018994391e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.29025544871751e-12!GO:0042773;ATP synthesis coupled electron transport;2.29025544871751e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.38656287624937e-12!GO:0045271;respiratory chain complex I;2.38656287624937e-12!GO:0005747;mitochondrial respiratory chain complex I;2.38656287624937e-12!GO:0009055;electron carrier activity;2.49199793866855e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.61481817462117e-12!GO:0042254;ribosome biogenesis and assembly;5.15301251344118e-12!GO:0006461;protein complex assembly;5.79088307074047e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.68730922710174e-12!GO:0000278;mitotic cell cycle;1.06194335573468e-11!GO:0043067;regulation of programmed cell death;1.08333843862121e-11!GO:0042981;regulation of apoptosis;1.46725391524707e-11!GO:0051082;unfolded protein binding;1.7765659674827e-11!GO:0048193;Golgi vesicle transport;2.68030871617138e-11!GO:0016192;vesicle-mediated transport;3.17033176853169e-11!GO:0048523;negative regulation of cellular process;5.73938346175152e-11!GO:0008135;translation factor activity, nucleic acid binding;5.77761946928907e-11!GO:0009056;catabolic process;5.85914996614319e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.8487922245807e-11!GO:0005524;ATP binding;1.09031967114205e-10!GO:0005635;nuclear envelope;1.14378896238156e-10!GO:0005789;endoplasmic reticulum membrane;1.22102350733886e-10!GO:0032559;adenyl ribonucleotide binding;1.5133302426521e-10!GO:0017038;protein import;1.83145282212209e-10!GO:0030554;adenyl nucleotide binding;2.01537410876898e-10!GO:0006399;tRNA metabolic process;2.11327243607729e-10!GO:0006913;nucleocytoplasmic transport;2.95820077204479e-10!GO:0009259;ribonucleotide metabolic process;7.02383185904265e-10!GO:0051169;nuclear transport;7.10927555792087e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.10642258282368e-09!GO:0000375;RNA splicing, via transesterification reactions;1.10642258282368e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.10642258282368e-09!GO:0051188;cofactor biosynthetic process;1.10944661976426e-09!GO:0048519;negative regulation of biological process;1.18134548538389e-09!GO:0008565;protein transporter activity;1.40824003740984e-09!GO:0006163;purine nucleotide metabolic process;1.79854988510041e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.12345475963648e-09!GO:0016740;transferase activity;3.707022103727e-09!GO:0031965;nuclear membrane;4.05765127337044e-09!GO:0009150;purine ribonucleotide metabolic process;4.13260254394939e-09!GO:0000074;regulation of progression through cell cycle;4.32536180781505e-09!GO:0051726;regulation of cell cycle;4.56971495578945e-09!GO:0003712;transcription cofactor activity;4.92213050793014e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.25802404732951e-09!GO:0005793;ER-Golgi intermediate compartment;7.14083472097015e-09!GO:0007005;mitochondrion organization and biogenesis;7.72421551826924e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.06213814820579e-09!GO:0006323;DNA packaging;9.06213814820579e-09!GO:0006164;purine nucleotide biosynthetic process;9.60832899770897e-09!GO:0009260;ribonucleotide biosynthetic process;9.92571425855934e-09!GO:0003743;translation initiation factor activity;1.04330067350936e-08!GO:0006413;translational initiation;1.07579704108396e-08!GO:0044453;nuclear membrane part;1.2498990705213e-08!GO:0051246;regulation of protein metabolic process;1.78232367067997e-08!GO:0048475;coated membrane;2.14719540722409e-08!GO:0030117;membrane coat;2.14719540722409e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.14719540722409e-08!GO:0051276;chromosome organization and biogenesis;2.14719540722409e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.34877344728015e-08!GO:0016491;oxidoreductase activity;2.44335485407498e-08!GO:0009141;nucleoside triphosphate metabolic process;2.46511984865621e-08!GO:0006364;rRNA processing;2.99668485105441e-08!GO:0005768;endosome;3.60210256720918e-08!GO:0065004;protein-DNA complex assembly;3.71640467594932e-08!GO:0016072;rRNA metabolic process;3.97589653228644e-08!GO:0006446;regulation of translational initiation;3.97589653228644e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.22789881229449e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.22789881229449e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.22789881229449e-08!GO:0008639;small protein conjugating enzyme activity;4.90379058348049e-08!GO:0006974;response to DNA damage stimulus;5.31694394279056e-08!GO:0022403;cell cycle phase;5.84307478281922e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.15064154926236e-08!GO:0006334;nucleosome assembly;7.20515780255029e-08!GO:0000087;M phase of mitotic cell cycle;7.25424429254171e-08!GO:0030120;vesicle coat;7.25424429254171e-08!GO:0030662;coated vesicle membrane;7.25424429254171e-08!GO:0007067;mitosis;8.78976881604794e-08!GO:0004842;ubiquitin-protein ligase activity;9.39261311299885e-08!GO:0006793;phosphorus metabolic process;9.89109893952858e-08!GO:0006796;phosphate metabolic process;9.89109893952858e-08!GO:0043038;amino acid activation;1.00697890368352e-07!GO:0006418;tRNA aminoacylation for protein translation;1.00697890368352e-07!GO:0043039;tRNA aminoacylation;1.00697890368352e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1074690754297e-07!GO:0005694;chromosome;1.16511477086678e-07!GO:0015986;ATP synthesis coupled proton transport;1.18596588458954e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18596588458954e-07!GO:0065002;intracellular protein transport across a membrane;1.23433297081316e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.2421957086557e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.2421957086557e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.26810523309748e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.26810523309748e-07!GO:0006366;transcription from RNA polymerase II promoter;1.33182078439865e-07!GO:0009108;coenzyme biosynthetic process;1.36983756238369e-07!GO:0048522;positive regulation of cellular process;1.55258101162942e-07!GO:0031497;chromatin assembly;1.69201971516049e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.79891854095061e-07!GO:0019787;small conjugating protein ligase activity;2.02772667745407e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.16533808497441e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.24776161323735e-07!GO:0006333;chromatin assembly or disassembly;2.29751665864558e-07!GO:0000785;chromatin;2.34427810852395e-07!GO:0042623;ATPase activity, coupled;2.43316972001358e-07!GO:0005643;nuclear pore;2.53170314189744e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.70037277987083e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.70037277987083e-07!GO:0044427;chromosomal part;3.25111927279279e-07!GO:0016604;nuclear body;3.25111927279279e-07!GO:0009060;aerobic respiration;3.68897945344604e-07!GO:0003924;GTPase activity;4.70602807118483e-07!GO:0009719;response to endogenous stimulus;4.90990999299575e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.26705282212445e-07!GO:0006260;DNA replication;5.66848681774134e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.00976119833723e-07!GO:0043069;negative regulation of programmed cell death;6.63600581027352e-07!GO:0019829;cation-transporting ATPase activity;6.82662831139053e-07!GO:0016881;acid-amino acid ligase activity;8.07371981248042e-07!GO:0016787;hydrolase activity;8.42389639784586e-07!GO:0016887;ATPase activity;8.68551586803588e-07!GO:0051170;nuclear import;8.74265940012392e-07!GO:0005773;vacuole;1.03337895208363e-06!GO:0006916;anti-apoptosis;1.04554699118548e-06!GO:0045333;cellular respiration;1.09813813404987e-06!GO:0009117;nucleotide metabolic process;1.12664621464843e-06!GO:0016779;nucleotidyltransferase activity;1.25538533842571e-06!GO:0046034;ATP metabolic process;1.26888524774595e-06!GO:0016310;phosphorylation;1.33565631495711e-06!GO:0006606;protein import into nucleus;1.60088338160412e-06!GO:0043066;negative regulation of apoptosis;1.63236835933627e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.74400988864803e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.00324403503556e-06!GO:0043623;cellular protein complex assembly;2.21775084111222e-06!GO:0006752;group transfer coenzyme metabolic process;2.24711364451053e-06!GO:0006754;ATP biosynthetic process;2.42363948812279e-06!GO:0006753;nucleoside phosphate metabolic process;2.42363948812279e-06!GO:0044431;Golgi apparatus part;2.80422542577782e-06!GO:0065009;regulation of a molecular function;3.29227429138756e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.66873068159798e-06!GO:0045259;proton-transporting ATP synthase complex;3.70620230877118e-06!GO:0003676;nucleic acid binding;3.99838166362513e-06!GO:0006281;DNA repair;4.69648617064392e-06!GO:0031252;leading edge;4.80827879586207e-06!GO:0019899;enzyme binding;4.83968776342251e-06!GO:0048518;positive regulation of biological process;4.84676277328222e-06!GO:0007243;protein kinase cascade;6.23762919755279e-06!GO:0042802;identical protein binding;6.25162011057466e-06!GO:0000323;lytic vacuole;6.55487913973014e-06!GO:0005764;lysosome;6.55487913973014e-06!GO:0046930;pore complex;6.87842328081496e-06!GO:0000786;nucleosome;7.53712804482436e-06!GO:0005762;mitochondrial large ribosomal subunit;8.52270444316581e-06!GO:0000315;organellar large ribosomal subunit;8.52270444316581e-06!GO:0006099;tricarboxylic acid cycle;9.89706833000405e-06!GO:0046356;acetyl-CoA catabolic process;9.89706833000405e-06!GO:0016070;RNA metabolic process;1.03266325499735e-05!GO:0005525;GTP binding;1.15610700200157e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.28276912982812e-05!GO:0004298;threonine endopeptidase activity;1.35891446249625e-05!GO:0006091;generation of precursor metabolites and energy;1.38736210815681e-05!GO:0003899;DNA-directed RNA polymerase activity;1.5606838834864e-05!GO:0008092;cytoskeletal protein binding;1.72872127266598e-05!GO:0000279;M phase;1.7864404201472e-05!GO:0043065;positive regulation of apoptosis;1.79568540100769e-05!GO:0016853;isomerase activity;1.87461375180761e-05!GO:0016607;nuclear speck;1.94831984919504e-05!GO:0043068;positive regulation of programmed cell death;1.98458676254278e-05!GO:0006084;acetyl-CoA metabolic process;2.10645025062309e-05!GO:0008654;phospholipid biosynthetic process;2.11457577602657e-05!GO:0032446;protein modification by small protein conjugation;2.41656990373927e-05!GO:0016567;protein ubiquitination;2.51457373527732e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.73434843380178e-05!GO:0005770;late endosome;2.87990019076591e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.9479570301295e-05!GO:0008026;ATP-dependent helicase activity;3.11219869299968e-05!GO:0031988;membrane-bound vesicle;3.11505703717176e-05!GO:0016126;sterol biosynthetic process;3.14456568109408e-05!GO:0030118;clathrin coat;3.48464709588453e-05!GO:0051187;cofactor catabolic process;3.56775315831716e-05!GO:0048468;cell development;3.57136782935183e-05!GO:0044440;endosomal part;3.69619475898737e-05!GO:0010008;endosome membrane;3.69619475898737e-05!GO:0050794;regulation of cellular process;3.99640888982875e-05!GO:0009967;positive regulation of signal transduction;4.11131352799709e-05!GO:0009109;coenzyme catabolic process;4.11131352799709e-05!GO:0008610;lipid biosynthetic process;4.19503666675786e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.23513087309632e-05!GO:0000139;Golgi membrane;4.74386418423736e-05!GO:0004386;helicase activity;5.27299124073341e-05!GO:0016044;membrane organization and biogenesis;5.29332242965084e-05!GO:0016564;transcription repressor activity;5.33639951285476e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.37121681683104e-05!GO:0045454;cell redox homeostasis;5.61360677007488e-05!GO:0003714;transcription corepressor activity;5.95202706385004e-05!GO:0005788;endoplasmic reticulum lumen;7.26134228603776e-05!GO:0005905;coated pit;7.52453189786031e-05!GO:0000314;organellar small ribosomal subunit;7.52453189786031e-05!GO:0005763;mitochondrial small ribosomal subunit;7.52453189786031e-05!GO:0003697;single-stranded DNA binding;7.94055971029542e-05!GO:0031324;negative regulation of cellular metabolic process;8.66946066378947e-05!GO:0007010;cytoskeleton organization and biogenesis;0.000101076135313328!GO:0006979;response to oxidative stress;0.00010692480506108!GO:0051301;cell division;0.000120026497586156!GO:0031982;vesicle;0.000130278144245968!GO:0043681;protein import into mitochondrion;0.000145978188187135!GO:0005798;Golgi-associated vesicle;0.000151274700033312!GO:0003713;transcription coactivator activity;0.000152066018580961!GO:0016563;transcription activator activity;0.000152981679450048!GO:0007006;mitochondrial membrane organization and biogenesis;0.000155598189426172!GO:0000245;spliceosome assembly;0.000158893750294864!GO:0006695;cholesterol biosynthetic process;0.000163081541611392!GO:0031410;cytoplasmic vesicle;0.000172937102055954!GO:0030029;actin filament-based process;0.000173314667994026!GO:0031968;organelle outer membrane;0.000187207383503939!GO:0045786;negative regulation of progression through cell cycle;0.000188869025838576!GO:0030119;AP-type membrane coat adaptor complex;0.000189565914213935!GO:0030132;clathrin coat of coated pit;0.000209371163849008!GO:0051427;hormone receptor binding;0.000209371163849008!GO:0030131;clathrin adaptor complex;0.000209371163849008!GO:0033116;ER-Golgi intermediate compartment membrane;0.000209739043160361!GO:0032561;guanyl ribonucleotide binding;0.000214054398890566!GO:0019001;guanyl nucleotide binding;0.000214054398890566!GO:0051325;interphase;0.000216386366929767!GO:0051329;interphase of mitotic cell cycle;0.000227953855928264!GO:0050657;nucleic acid transport;0.000227953855928264!GO:0051236;establishment of RNA localization;0.000227953855928264!GO:0050658;RNA transport;0.000227953855928264!GO:0006626;protein targeting to mitochondrion;0.000240666789554719!GO:0006403;RNA localization;0.000252710662051398!GO:0016568;chromatin modification;0.000258399769103022!GO:0006950;response to stress;0.000259580481534009!GO:0009892;negative regulation of metabolic process;0.000263230715251451!GO:0006082;organic acid metabolic process;0.000267800591633547!GO:0019867;outer membrane;0.000282890484960282!GO:0005741;mitochondrial outer membrane;0.000288377081637616!GO:0006917;induction of apoptosis;0.000302256484289581!GO:0008283;cell proliferation;0.000310465227898497!GO:0019752;carboxylic acid metabolic process;0.000328372545736542!GO:0050790;regulation of catalytic activity;0.0003285593559414!GO:0043566;structure-specific DNA binding;0.0003285593559414!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000333399199820509!GO:0005769;early endosome;0.000333399199820509!GO:0006839;mitochondrial transport;0.000347779795730157!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000350192019482158!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000353127750041347!GO:0035257;nuclear hormone receptor binding;0.000402778860345791!GO:0006613;cotranslational protein targeting to membrane;0.000419094802087212!GO:0019843;rRNA binding;0.000425146721673596!GO:0007264;small GTPase mediated signal transduction;0.000425551544667142!GO:0005048;signal sequence binding;0.000432071996627578!GO:0012502;induction of programmed cell death;0.000449011084229707!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00047367121799007!GO:0030867;rough endoplasmic reticulum membrane;0.000480216049101519!GO:0008033;tRNA processing;0.000501553843575978!GO:0015630;microtubule cytoskeleton;0.000538107301460697!GO:0003724;RNA helicase activity;0.00055030043066508!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000564494340278751!GO:0015980;energy derivation by oxidation of organic compounds;0.000564811398264549!GO:0016481;negative regulation of transcription;0.000581261454159201!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000796990483647769!GO:0005667;transcription factor complex;0.000801301147353591!GO:0005885;Arp2/3 protein complex;0.000808280828509944!GO:0005791;rough endoplasmic reticulum;0.00087119123060742!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00087400319756122!GO:0008632;apoptotic program;0.000945171473056046!GO:0030176;integral to endoplasmic reticulum membrane;0.000950130732471934!GO:0051920;peroxiredoxin activity;0.000950130732471934!GO:0046474;glycerophospholipid biosynthetic process;0.00112686898883257!GO:0008250;oligosaccharyl transferase complex;0.0011635271355502!GO:0043488;regulation of mRNA stability;0.00119121453479498!GO:0043487;regulation of RNA stability;0.00119121453479498!GO:0050662;coenzyme binding;0.00121965770624449!GO:0030658;transport vesicle membrane;0.00124242228595338!GO:0030125;clathrin vesicle coat;0.00129538221403491!GO:0030665;clathrin coated vesicle membrane;0.00129538221403491!GO:0050789;regulation of biological process;0.00134346847683663!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00135182489234736!GO:0001726;ruffle;0.00143452865663208!GO:0005819;spindle;0.00145245110898987!GO:0009165;nucleotide biosynthetic process;0.00152284665565132!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00156206685171469!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00161969807957803!GO:0016859;cis-trans isomerase activity;0.00163099002382182!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00171316179440758!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00171316179440758!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00171316179440758!GO:0004576;oligosaccharyl transferase activity;0.00176423603008411!GO:0046467;membrane lipid biosynthetic process;0.00177106031047963!GO:0048471;perinuclear region of cytoplasm;0.00182911005542953!GO:0006414;translational elongation;0.00186636100262058!GO:0044262;cellular carbohydrate metabolic process;0.00194677829589294!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00200814796681135!GO:0030880;RNA polymerase complex;0.00207958098201225!GO:0043021;ribonucleoprotein binding;0.00216497083915013!GO:0000151;ubiquitin ligase complex;0.00221027561205905!GO:0051338;regulation of transferase activity;0.00229921944535492!GO:0051028;mRNA transport;0.00250956468660628!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00253131164686557!GO:0015992;proton transport;0.00272060716206572!GO:0051252;regulation of RNA metabolic process;0.00277938565152218!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00278288641386131!GO:0000059;protein import into nucleus, docking;0.0028114123003258!GO:0048037;cofactor binding;0.00284082260833585!GO:0015631;tubulin binding;0.00284395357806844!GO:0005774;vacuolar membrane;0.00303408483248778!GO:0051789;response to protein stimulus;0.00306088139970076!GO:0006986;response to unfolded protein;0.00306088139970076!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00311727913356655!GO:0006818;hydrogen transport;0.00313171034146046!GO:0051540;metal cluster binding;0.00315639128533408!GO:0051536;iron-sulfur cluster binding;0.00315639128533408!GO:0005813;centrosome;0.00318815252443075!GO:0006401;RNA catabolic process;0.00322342141034343!GO:0006520;amino acid metabolic process;0.0032636910253388!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00345103188197643!GO:0007242;intracellular signaling cascade;0.00348270445474!GO:0016197;endosome transport;0.00362003515264823!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00365299200021809!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00381281043780055!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00390088200629958!GO:0048487;beta-tubulin binding;0.00393533775220007!GO:0008186;RNA-dependent ATPase activity;0.00402058228266316!GO:0030660;Golgi-associated vesicle membrane;0.00402058228266316!GO:0006595;polyamine metabolic process;0.00409403208518323!GO:0018196;peptidyl-asparagine modification;0.0043807781635669!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0043807781635669!GO:0006612;protein targeting to membrane;0.00453499430710816!GO:0008637;apoptotic mitochondrial changes;0.00471750098091137!GO:0030031;cell projection biogenesis;0.00474353695582719!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00483862973972631!GO:0000428;DNA-directed RNA polymerase complex;0.00483862973972631!GO:0030133;transport vesicle;0.00488498466720572!GO:0008361;regulation of cell size;0.0048931580627482!GO:0044452;nucleolar part;0.00501651411293833!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00515845237230517!GO:0017166;vinculin binding;0.00520435369317918!GO:0007088;regulation of mitosis;0.00536940364334909!GO:0043549;regulation of kinase activity;0.00539101643950276!GO:0046822;regulation of nucleocytoplasmic transport;0.00548974912595392!GO:0001558;regulation of cell growth;0.00571953001433825!GO:0008139;nuclear localization sequence binding;0.00575502113305843!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00578172306682618!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00578172306682618!GO:0046483;heterocycle metabolic process;0.00588910540884066!GO:0016125;sterol metabolic process;0.00621670514560369!GO:0016049;cell growth;0.00624930788913849!GO:0030663;COPI coated vesicle membrane;0.00624930788913849!GO:0030126;COPI vesicle coat;0.00624930788913849!GO:0031902;late endosome membrane;0.00633733326618957!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00650443558471964!GO:0015399;primary active transmembrane transporter activity;0.00650443558471964!GO:0005856;cytoskeleton;0.00651759275872284!GO:0030137;COPI-coated vesicle;0.00652223081507555!GO:0044255;cellular lipid metabolic process;0.00663101035985002!GO:0046489;phosphoinositide biosynthetic process;0.00663953797618962!GO:0030659;cytoplasmic vesicle membrane;0.00669409062855583!GO:0051128;regulation of cellular component organization and biogenesis;0.0068918859164218!GO:0051168;nuclear export;0.00694828972824463!GO:0051287;NAD binding;0.00707855388087254!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00708778587555389!GO:0005815;microtubule organizing center;0.00743752259550842!GO:0006118;electron transport;0.00750637482053618!GO:0006417;regulation of translation;0.00758077807003077!GO:0030027;lamellipodium;0.00768523713259772!GO:0006261;DNA-dependent DNA replication;0.00783873662776111!GO:0008243;plasminogen activator activity;0.00784118171854012!GO:0035258;steroid hormone receptor binding;0.0078832654701449!GO:0051348;negative regulation of transferase activity;0.00806169249872418!GO:0045941;positive regulation of transcription;0.00809768049124382!GO:0044437;vacuolar part;0.00837138614911534!GO:0004004;ATP-dependent RNA helicase activity;0.00852806471476801!GO:0005765;lysosomal membrane;0.00868463382669264!GO:0016791;phosphoric monoester hydrolase activity;0.00879672572728976!GO:0005149;interleukin-1 receptor binding;0.00886459834973075!GO:0033673;negative regulation of kinase activity;0.00886459834973075!GO:0006469;negative regulation of protein kinase activity;0.00886459834973075!GO:0008047;enzyme activator activity;0.00919348521162677!GO:0051101;regulation of DNA binding;0.00928141566407502!GO:0006066;alcohol metabolic process;0.00937381086047892!GO:0051098;regulation of binding;0.00959082687072554!GO:0005684;U2-dependent spliceosome;0.00996588269568136!GO:0000049;tRNA binding;0.0104052801488572!GO:0009166;nucleotide catabolic process;0.0110946230505196!GO:0006778;porphyrin metabolic process;0.0113279656259188!GO:0033013;tetrapyrrole metabolic process;0.0113279656259188!GO:0055092;sterol homeostasis;0.0115230626105591!GO:0042632;cholesterol homeostasis;0.0115230626105591!GO:0009116;nucleoside metabolic process;0.0115263348677447!GO:0043284;biopolymer biosynthetic process;0.0118746801112193!GO:0006650;glycerophospholipid metabolic process;0.0118746801112193!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0120598067574202!GO:0006643;membrane lipid metabolic process;0.0125550829530289!GO:0006611;protein export from nucleus;0.012836650935058!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130552001546393!GO:0009966;regulation of signal transduction;0.0134058343904394!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0134082007222182!GO:0045859;regulation of protein kinase activity;0.0134531874596308!GO:0006891;intra-Golgi vesicle-mediated transport;0.0142198690229717!GO:0006402;mRNA catabolic process;0.0142593633576441!GO:0030041;actin filament polymerization;0.0143425301092013!GO:0051087;chaperone binding;0.0143571455372698!GO:0006509;membrane protein ectodomain proteolysis;0.0143571455372698!GO:0033619;membrane protein proteolysis;0.0143571455372698!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0143571455372698!GO:0009112;nucleobase metabolic process;0.0150763670721577!GO:0022890;inorganic cation transmembrane transporter activity;0.0153508190422917!GO:0048144;fibroblast proliferation;0.0154400437744486!GO:0048145;regulation of fibroblast proliferation;0.0154400437744486!GO:0006779;porphyrin biosynthetic process;0.0157738427340137!GO:0033014;tetrapyrrole biosynthetic process;0.0157738427340137!GO:0045893;positive regulation of transcription, DNA-dependent;0.0159438463827803!GO:0005832;chaperonin-containing T-complex;0.0161487427798169!GO:0016311;dephosphorylation;0.0161981811280732!GO:0045792;negative regulation of cell size;0.0162800900649567!GO:0003684;damaged DNA binding;0.0165517068819813!GO:0044433;cytoplasmic vesicle part;0.0165822469425255!GO:0006897;endocytosis;0.0166856369460504!GO:0010324;membrane invagination;0.0166856369460504!GO:0001836;release of cytochrome c from mitochondria;0.0168198762035039!GO:0006740;NADPH regeneration;0.0168886026662557!GO:0006098;pentose-phosphate shunt;0.0168886026662557!GO:0051235;maintenance of localization;0.0170110443679981!GO:0030308;negative regulation of cell growth;0.0170830557839807!GO:0030128;clathrin coat of endocytic vesicle;0.0175720749690395!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0175720749690395!GO:0030122;AP-2 adaptor complex;0.0175720749690395!GO:0006749;glutathione metabolic process;0.0176156104928095!GO:0016301;kinase activity;0.0179760371010756!GO:0048146;positive regulation of fibroblast proliferation;0.0179760371010756!GO:0007265;Ras protein signal transduction;0.0179760371010756!GO:0031072;heat shock protein binding;0.0183461680451036!GO:0003779;actin binding;0.0184843452210136!GO:0031272;regulation of pseudopodium formation;0.0185125211866189!GO:0031269;pseudopodium formation;0.0185125211866189!GO:0031344;regulation of cell projection organization and biogenesis;0.0185125211866189!GO:0031268;pseudopodium organization and biogenesis;0.0185125211866189!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0185125211866189!GO:0031274;positive regulation of pseudopodium formation;0.0185125211866189!GO:0031529;ruffle organization and biogenesis;0.0186268416895425!GO:0045334;clathrin-coated endocytic vesicle;0.0192034621018625!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0194396495481915!GO:0004721;phosphoprotein phosphatase activity;0.0195380090471064!GO:0009303;rRNA transcription;0.0202481935998691!GO:0043022;ribosome binding;0.020437720648214!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0208044766687338!GO:0015002;heme-copper terminal oxidase activity;0.0208044766687338!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0208044766687338!GO:0004129;cytochrome-c oxidase activity;0.0208044766687338!GO:0003729;mRNA binding;0.0208745437157879!GO:0045926;negative regulation of growth;0.0215977027684388!GO:0000075;cell cycle checkpoint;0.0216283772227287!GO:0035035;histone acetyltransferase binding;0.0219048199156707!GO:0005657;replication fork;0.0220163391603594!GO:0009889;regulation of biosynthetic process;0.0220741953064509!GO:0008538;proteasome activator activity;0.022347436386883!GO:0045892;negative regulation of transcription, DNA-dependent;0.0228953705987078!GO:0043086;negative regulation of catalytic activity;0.0228953705987078!GO:0030100;regulation of endocytosis;0.0228953705987078!GO:0006007;glucose catabolic process;0.0231674061432422!GO:0008652;amino acid biosynthetic process;0.0232209470513527!GO:0006354;RNA elongation;0.0232250120656114!GO:0046519;sphingoid metabolic process;0.0233348265905924!GO:0019318;hexose metabolic process;0.0233348265905924!GO:0018193;peptidyl-amino acid modification;0.0233582323891558!GO:0005862;muscle thin filament tropomyosin;0.0234654645764849!GO:0030521;androgen receptor signaling pathway;0.0236891488386719!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0239680383165557!GO:0000082;G1/S transition of mitotic cell cycle;0.0239680383165557!GO:0031301;integral to organelle membrane;0.0240809077555451!GO:0030145;manganese ion binding;0.0240809077555451!GO:0043154;negative regulation of caspase activity;0.0240809077555451!GO:0016408;C-acyltransferase activity;0.0244357391334097!GO:0006383;transcription from RNA polymerase III promoter;0.0246640540931561!GO:0005912;adherens junction;0.0247766387659562!GO:0008180;signalosome;0.0248224109771225!GO:0055088;lipid homeostasis;0.0249351391619542!GO:0008629;induction of apoptosis by intracellular signals;0.0250378815183213!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0251908295220736!GO:0007050;cell cycle arrest;0.0252391289282531!GO:0005996;monosaccharide metabolic process;0.0256943852218669!GO:0006629;lipid metabolic process;0.0256971713369473!GO:0003746;translation elongation factor activity;0.0260636557612458!GO:0030833;regulation of actin filament polymerization;0.0261986520375708!GO:0030134;ER to Golgi transport vesicle;0.0262044118938847!GO:0000209;protein polyubiquitination;0.0269211819054164!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0269227800140707!GO:0019904;protein domain specific binding;0.0270090901835068!GO:0046426;negative regulation of JAK-STAT cascade;0.0271705909811494!GO:0016363;nuclear matrix;0.0276557092668658!GO:0042168;heme metabolic process;0.0277055463877174!GO:0005925;focal adhesion;0.0278510415021228!GO:0003711;transcription elongation regulator activity;0.027860708936747!GO:0031326;regulation of cellular biosynthetic process;0.0286482290642787!GO:0012506;vesicle membrane;0.0289461403990117!GO:0000096;sulfur amino acid metabolic process;0.0290084375471495!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0291761097506033!GO:0006807;nitrogen compound metabolic process;0.029208100296988!GO:0030032;lamellipodium biogenesis;0.029208100296988!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0292581985920843!GO:0004674;protein serine/threonine kinase activity;0.0293684006338435!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0295102918436627!GO:0006644;phospholipid metabolic process;0.0296977155279247!GO:0008094;DNA-dependent ATPase activity;0.0297577522281538!GO:0043189;H4/H2A histone acetyltransferase complex;0.0299234975854744!GO:0043492;ATPase activity, coupled to movement of substances;0.0301224518194206!GO:0006506;GPI anchor biosynthetic process;0.0302485058363751!GO:0051272;positive regulation of cell motility;0.0303712112223579!GO:0040017;positive regulation of locomotion;0.0303712112223579!GO:0048660;regulation of smooth muscle cell proliferation;0.0310692136566655!GO:0001666;response to hypoxia;0.0311851607395617!GO:0030503;regulation of cell redox homeostasis;0.031254283581151!GO:0008154;actin polymerization and/or depolymerization;0.031254283581151!GO:0003690;double-stranded DNA binding;0.0312618028103792!GO:0032507;maintenance of cellular protein localization;0.0318039900227133!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.031948357297914!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0320010758788659!GO:0045039;protein import into mitochondrial inner membrane;0.0320010758788659!GO:0006733;oxidoreduction coenzyme metabolic process;0.0322727548048495!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.03264650332661!GO:0016584;nucleosome positioning;0.0341338563810353!GO:0005874;microtubule;0.0346106873208914!GO:0050178;phenylpyruvate tautomerase activity;0.0346972071292197!GO:0065007;biological regulation;0.0347242336872606!GO:0004680;casein kinase activity;0.0348668435907935!GO:0035267;NuA4 histone acetyltransferase complex;0.035366779989481!GO:0005869;dynactin complex;0.0355958755032207!GO:0048500;signal recognition particle;0.0361499282978844!GO:0006730;one-carbon compound metabolic process;0.0361975942340086!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0363243586790212!GO:0005637;nuclear inner membrane;0.0367648224251374!GO:0030384;phosphoinositide metabolic process;0.0370605231860874!GO:0030127;COPII vesicle coat;0.0372082067393283!GO:0012507;ER to Golgi transport vesicle membrane;0.0372082067393283!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0372719741398116!GO:0010257;NADH dehydrogenase complex assembly;0.0372719741398116!GO:0033108;mitochondrial respiratory chain complex assembly;0.0372719741398116!GO:0016860;intramolecular oxidoreductase activity;0.0373754005714459!GO:0006519;amino acid and derivative metabolic process;0.0375654137062202!GO:0006144;purine base metabolic process;0.0375654137062202!GO:0009893;positive regulation of metabolic process;0.0375882100700649!GO:0000030;mannosyltransferase activity;0.0376496910533051!GO:0006458;'de novo' protein folding;0.0378892844768489!GO:0051084;'de novo' posttranslational protein folding;0.0378892844768489!GO:0005758;mitochondrial intermembrane space;0.0381015950596283!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0381028234474316!GO:0043433;negative regulation of transcription factor activity;0.0381028234474316!GO:0006783;heme biosynthetic process;0.0383636481713286!GO:0032508;DNA duplex unwinding;0.0386166286036993!GO:0032392;DNA geometric change;0.0386166286036993!GO:0008426;protein kinase C inhibitor activity;0.0389387463252768!GO:0006767;water-soluble vitamin metabolic process;0.0391199281738036!GO:0040008;regulation of growth;0.0394044534487934!GO:0019206;nucleoside kinase activity;0.0402131305885522!GO:0006289;nucleotide-excision repair;0.0406478157306137!GO:0016272;prefoldin complex;0.0410224262546962!GO:0040029;regulation of gene expression, epigenetic;0.0413879266767397!GO:0006505;GPI anchor metabolic process;0.0415816939798055!GO:0006596;polyamine biosynthetic process;0.0423974194106815!GO:0008203;cholesterol metabolic process;0.0424863676734515!GO:0033559;unsaturated fatty acid metabolic process;0.0426544080676487!GO:0006636;unsaturated fatty acid biosynthetic process;0.0426544080676487!GO:0015036;disulfide oxidoreductase activity;0.0426850260853814!GO:0006892;post-Golgi vesicle-mediated transport;0.0426850260853814!GO:0030911;TPR domain binding;0.0432780381860711!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0434544253238032!GO:0006352;transcription initiation;0.0438917074759624!GO:0043281;regulation of caspase activity;0.0439506054215813!GO:0045936;negative regulation of phosphate metabolic process;0.0453063848897835!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0453063848897835!GO:0008168;methyltransferase activity;0.0453063848897835!GO:0016741;transferase activity, transferring one-carbon groups;0.0454502982871181!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0457016422701604!GO:0012510;trans-Golgi network transport vesicle membrane;0.0457016422701604!GO:0005092;GDP-dissociation inhibitor activity;0.0462606748199234!GO:0046983;protein dimerization activity;0.0462606748199234!GO:0004364;glutathione transferase activity;0.0462606748199234!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0465093648857363!GO:0009119;ribonucleoside metabolic process;0.0465935713955987!GO:0051336;regulation of hydrolase activity;0.0467178361379372!GO:0004518;nuclease activity;0.0467398254118515!GO:0005096;GTPase activator activity;0.0471987077478566!GO:0046870;cadmium ion binding;0.0472558119005747!GO:0033157;regulation of intracellular protein transport;0.047281857052744!GO:0042306;regulation of protein import into nucleus;0.047281857052744!GO:0008022;protein C-terminus binding;0.0473239605614331!GO:0000123;histone acetyltransferase complex;0.0473239605614331!GO:0003678;DNA helicase activity;0.0473369251902554!GO:0008017;microtubule binding;0.0481279603296553!GO:0006633;fatty acid biosynthetic process;0.0486127043800793!GO:0031124;mRNA 3'-end processing;0.0493502965890563!GO:0005784;translocon complex;0.0494344762011895!GO:0008234;cysteine-type peptidase activity;0.0494974181398401!GO:0008312;7S RNA binding;0.0497070703182133!GO:0006693;prostaglandin metabolic process;0.0499737436955688!GO:0006692;prostanoid metabolic process;0.0499737436955688 | |||
|sample_id=11369 | |sample_id=11369 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=trachea | |sample_tissue=trachea | ||
|top_motifs=PPARG:2.6942259901;TP53:2.34604652751;TBX4,5:2.21442870651;POU2F1..3:2.17551536297;TBP:1.8757432982;NR5A1,2:1.71758701792;VSX1,2:1.552138092;ZNF148:1.49273742398;ZEB1:1.48910767855;XCPE1{core}:1.39925498184;SNAI1..3:1.2920564999;MYOD1:1.27213821365;PAX1,9:1.26665777458;GTF2A1,2:1.25752175819;ZNF423:1.23576593634;HMX1:1.13317630003;TFAP2{A,C}:1.07492587528;SP1:1.05379745987;NKX2-3_NKX2-5:1.04153407908;TFCP2:0.984874002322;GLI1..3:0.969182518998;TEAD1:0.865321542613;MTF1:0.865241340818;RXRA_VDR{dimer}:0.834076537571;NANOG:0.800102934819;NFIL3:0.782037027414;FOS_FOS{B,L1}_JUN{B,D}:0.769983179311;LMO2:0.757989216364;ADNP_IRX_SIX_ZHX:0.661197228779;TLX1..3_NFIC{dimer}:0.642539447429;ARID5B:0.640828897464;POU6F1:0.632026663294;HAND1,2:0.624974145619;ZNF238:0.621516568629;EBF1:0.547015443186;BACH2:0.530640568267;NFE2:0.461799175794;TFAP4:0.446722418276;ONECUT1,2:0.439972884676;ESR1:0.403383963044;bHLH_family:0.388523504859;AR:0.384601748163;HIF1A:0.379277878143;FOSL2:0.367516749338;GZF1:0.36140132014;RXR{A,B,G}:0.32523614113;STAT5{A,B}:0.317030811529;POU1F1:0.283295162025;GFI1:0.275927482333;IKZF1:0.25758491696;REST:0.228400235801;GFI1B:0.211779216843;PBX1:0.19675736531;ZBTB6:0.174231120572;ETS1,2:0.173015123027;SMAD1..7,9:0.160666640233;PAX2:0.160071131729;FOXM1:0.148660741309;ZIC1..3:0.1389665327;LEF1_TCF7_TCF7L1,2:0.128000123036;SPZ1:0.114875669498;HOX{A5,B5}:0.074981249617;SRF:0.0592558938388;SOX17:0.0369902003146;GCM1,2:0.0283516701044;HLF:0.0221983617543;HNF4A_NR2F1,2:0.0158334973078;MAZ:0.0144461948783;CEBPA,B_DDIT3:0.00456538815179;OCT4_SOX2{dimer}:-0.00761355161511;SOX{8,9,10}:-0.0113665336629;POU3F1..4:-0.0201565866097;SOX2:-0.0415337524633;JUN:-0.0463719784915;NFE2L1:-0.056456495106;EP300:-0.0602012471321;NFKB1_REL_RELA:-0.0674864292092;ZNF143:-0.0845010008589;CDC5L:-0.0883727068156;HIC1:-0.094460121901;NFY{A,B,C}:-0.10124757798;FOXQ1:-0.103653437053;NKX3-2:-0.108587414686;GATA6:-0.121002006264;TFDP1:-0.121027828757;ELF1,2,4:-0.137923035224;TFAP2B:-0.160885252024;E2F1..5:-0.164700697801;GTF2I:-0.16653640453;PAX5:-0.169551170343;RREB1:-0.175399197963;CRX:-0.190111696617;RUNX1..3:-0.194140225855;NKX2-2,8:-0.202047474533;SPIB:-0.206803657947;NR1H4:-0.208306481268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.23793500668;ELK1,4_GABP{A,B1}:-0.244209190319;POU5F1:-0.253502466874;FOXL1:-0.269073628915;FOX{F1,F2,J1}:-0.277233975007;NFE2L2:-0.291107028222;UFEwm:-0.291854158824;HES1:-0.321711853969;YY1:-0.329717593567;STAT2,4,6:-0.347422857917;SPI1:-0.348068003513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.3620130119;RBPJ:-0.365263828858;MED-1{core}:-0.367424676398;HNF1A:-0.371354183157;NR6A1:-0.372976244462;LHX3,4:-0.378342219308;PITX1..3:-0.379811795406;ESRRA:-0.43139646959;PAX8:-0.456148520952;EGR1..3:-0.45693312203;KLF4:-0.469922214658;PDX1:-0.490885200492;EN1,2:-0.50749355547;HOX{A4,D4}:-0.519973838169;IRF7:-0.525266730232;ATF2:-0.547722927795;HOX{A6,A7,B6,B7}:-0.558481749364;NKX2-1,4:-0.560519677302;PATZ1:-0.569776027102;MEF2{A,B,C,D}:-0.603282103227;MYFfamily:-0.60989919969;CUX2:-0.612805150833;MYBL2:-0.619126296622;ZFP161:-0.625878929834;RFX1:-0.644369196574;TLX2:-0.67052026771;NR3C1:-0.679581181822;MYB:-0.681155166696;NHLH1,2:-0.683015365526;HSF1,2:-0.685460047003;ATF5_CREB3:-0.687757787736;CREB1:-0.704968601435;ALX4:-0.724864747875;HOXA9_MEIS1:-0.732682773359;NANOG{mouse}:-0.73500280991;TAL1_TCF{3,4,12}:-0.735366618138;NFATC1..3:-0.742468495276;NRF1:-0.794947896442;FOXN1:-0.804344162631;RFX2..5_RFXANK_RFXAP:-0.824843688934;ZNF384:-0.827667163943;RORA:-0.835696822426;ATF4:-0.840676453131;TOPORS:-0.861383327958;PRRX1,2:-0.880769433166;MZF1:-0.893074225108;T:-0.89609490145;PAX6:-0.919648485465;PAX4:-0.927496816923;TGIF1:-0.968494627174;MAFB:-1.00160057695;IRF1,2:-1.00775551364;PRDM1:-1.02907576529;TEF:-1.03480730038;DBP:-1.04059721307;BREu{core}:-1.04148693823;MTE{core}:-1.0727698555;HBP1_HMGB_SSRP1_UBTF:-1.16314193307;ZBTB16:-1.20675943594;SOX5:-1.22054037915;AHR_ARNT_ARNT2:-1.28885472546;ATF6:-1.30479174331;ALX1:-1.3156323721;FOX{D1,D2}:-1.31789431337;PAX3,7:-1.34024809722;DMAP1_NCOR{1,2}_SMARC:-1.35473629295;NKX3-1:-1.36536301669;AIRE:-1.39408984713;SREBF1,2:-1.43823328953;NFIX:-1.44286434082;CDX1,2,4:-1.46205933856;HMGA1,2:-1.50973897376;XBP1:-1.53008245563;FOXO1,3,4:-1.53537369165;STAT1,3:-1.53958777367;FOXP3:-1.54891889565;FOXA2:-1.55322503285;GATA4:-1.60816971825;FOXP1:-1.69577959881;FOX{I1,J2}:-1.76075181733;FOXD3:-1.77825191249;NKX6-1,2:-1.79681095893;EVI1:-1.80583899834;IKZF2:-1.83048592096;BPTF:-2.11728546848 | |top_motifs=PPARG:2.6942259901;TP53:2.34604652751;TBX4,5:2.21442870651;POU2F1..3:2.17551536297;TBP:1.8757432982;NR5A1,2:1.71758701792;VSX1,2:1.552138092;ZNF148:1.49273742398;ZEB1:1.48910767855;XCPE1{core}:1.39925498184;SNAI1..3:1.2920564999;MYOD1:1.27213821365;PAX1,9:1.26665777458;GTF2A1,2:1.25752175819;ZNF423:1.23576593634;HMX1:1.13317630003;TFAP2{A,C}:1.07492587528;SP1:1.05379745987;NKX2-3_NKX2-5:1.04153407908;TFCP2:0.984874002322;GLI1..3:0.969182518998;TEAD1:0.865321542613;MTF1:0.865241340818;RXRA_VDR{dimer}:0.834076537571;NANOG:0.800102934819;NFIL3:0.782037027414;FOS_FOS{B,L1}_JUN{B,D}:0.769983179311;LMO2:0.757989216364;ADNP_IRX_SIX_ZHX:0.661197228779;TLX1..3_NFIC{dimer}:0.642539447429;ARID5B:0.640828897464;POU6F1:0.632026663294;HAND1,2:0.624974145619;ZNF238:0.621516568629;EBF1:0.547015443186;BACH2:0.530640568267;NFE2:0.461799175794;TFAP4:0.446722418276;ONECUT1,2:0.439972884676;ESR1:0.403383963044;bHLH_family:0.388523504859;AR:0.384601748163;HIF1A:0.379277878143;FOSL2:0.367516749338;GZF1:0.36140132014;RXR{A,B,G}:0.32523614113;STAT5{A,B}:0.317030811529;POU1F1:0.283295162025;GFI1:0.275927482333;IKZF1:0.25758491696;REST:0.228400235801;GFI1B:0.211779216843;PBX1:0.19675736531;ZBTB6:0.174231120572;ETS1,2:0.173015123027;SMAD1..7,9:0.160666640233;PAX2:0.160071131729;FOXM1:0.148660741309;ZIC1..3:0.1389665327;LEF1_TCF7_TCF7L1,2:0.128000123036;SPZ1:0.114875669498;HOX{A5,B5}:0.074981249617;SRF:0.0592558938388;SOX17:0.0369902003146;GCM1,2:0.0283516701044;HLF:0.0221983617543;HNF4A_NR2F1,2:0.0158334973078;MAZ:0.0144461948783;CEBPA,B_DDIT3:0.00456538815179;OCT4_SOX2{dimer}:-0.00761355161511;SOX{8,9,10}:-0.0113665336629;POU3F1..4:-0.0201565866097;SOX2:-0.0415337524633;JUN:-0.0463719784915;NFE2L1:-0.056456495106;EP300:-0.0602012471321;NFKB1_REL_RELA:-0.0674864292092;ZNF143:-0.0845010008589;CDC5L:-0.0883727068156;HIC1:-0.094460121901;NFY{A,B,C}:-0.10124757798;FOXQ1:-0.103653437053;NKX3-2:-0.108587414686;GATA6:-0.121002006264;TFDP1:-0.121027828757;ELF1,2,4:-0.137923035224;TFAP2B:-0.160885252024;E2F1..5:-0.164700697801;GTF2I:-0.16653640453;PAX5:-0.169551170343;RREB1:-0.175399197963;CRX:-0.190111696617;RUNX1..3:-0.194140225855;NKX2-2,8:-0.202047474533;SPIB:-0.206803657947;NR1H4:-0.208306481268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.23793500668;ELK1,4_GABP{A,B1}:-0.244209190319;POU5F1:-0.253502466874;FOXL1:-0.269073628915;FOX{F1,F2,J1}:-0.277233975007;NFE2L2:-0.291107028222;UFEwm:-0.291854158824;HES1:-0.321711853969;YY1:-0.329717593567;STAT2,4,6:-0.347422857917;SPI1:-0.348068003513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.3620130119;RBPJ:-0.365263828858;MED-1{core}:-0.367424676398;HNF1A:-0.371354183157;NR6A1:-0.372976244462;LHX3,4:-0.378342219308;PITX1..3:-0.379811795406;ESRRA:-0.43139646959;PAX8:-0.456148520952;EGR1..3:-0.45693312203;KLF4:-0.469922214658;PDX1:-0.490885200492;EN1,2:-0.50749355547;HOX{A4,D4}:-0.519973838169;IRF7:-0.525266730232;ATF2:-0.547722927795;HOX{A6,A7,B6,B7}:-0.558481749364;NKX2-1,4:-0.560519677302;PATZ1:-0.569776027102;MEF2{A,B,C,D}:-0.603282103227;MYFfamily:-0.60989919969;CUX2:-0.612805150833;MYBL2:-0.619126296622;ZFP161:-0.625878929834;RFX1:-0.644369196574;TLX2:-0.67052026771;NR3C1:-0.679581181822;MYB:-0.681155166696;NHLH1,2:-0.683015365526;HSF1,2:-0.685460047003;ATF5_CREB3:-0.687757787736;CREB1:-0.704968601435;ALX4:-0.724864747875;HOXA9_MEIS1:-0.732682773359;NANOG{mouse}:-0.73500280991;TAL1_TCF{3,4,12}:-0.735366618138;NFATC1..3:-0.742468495276;NRF1:-0.794947896442;FOXN1:-0.804344162631;RFX2..5_RFXANK_RFXAP:-0.824843688934;ZNF384:-0.827667163943;RORA:-0.835696822426;ATF4:-0.840676453131;TOPORS:-0.861383327958;PRRX1,2:-0.880769433166;MZF1:-0.893074225108;T:-0.89609490145;PAX6:-0.919648485465;PAX4:-0.927496816923;TGIF1:-0.968494627174;MAFB:-1.00160057695;IRF1,2:-1.00775551364;PRDM1:-1.02907576529;TEF:-1.03480730038;DBP:-1.04059721307;BREu{core}:-1.04148693823;MTE{core}:-1.0727698555;HBP1_HMGB_SSRP1_UBTF:-1.16314193307;ZBTB16:-1.20675943594;SOX5:-1.22054037915;AHR_ARNT_ARNT2:-1.28885472546;ATF6:-1.30479174331;ALX1:-1.3156323721;FOX{D1,D2}:-1.31789431337;PAX3,7:-1.34024809722;DMAP1_NCOR{1,2}_SMARC:-1.35473629295;NKX3-1:-1.36536301669;AIRE:-1.39408984713;SREBF1,2:-1.43823328953;NFIX:-1.44286434082;CDX1,2,4:-1.46205933856;HMGA1,2:-1.50973897376;XBP1:-1.53008245563;FOXO1,3,4:-1.53537369165;STAT1,3:-1.53958777367;FOXP3:-1.54891889565;FOXA2:-1.55322503285;GATA4:-1.60816971825;FOXP1:-1.69577959881;FOX{I1,J2}:-1.76075181733;FOXD3:-1.77825191249;NKX6-1,2:-1.79681095893;EVI1:-1.80583899834;IKZF2:-1.83048592096;BPTF:-2.11728546848 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11369-118A1;search_select_hide=table117:FF:11369-118A1 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Tracheal Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11993 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11993
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11993
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.638 |
| 10 | 10 | 0.55 |
| 100 | 100 | 0.382 |
| 101 | 101 | 0.00351 |
| 102 | 102 | 0.24 |
| 103 | 103 | 0.274 |
| 104 | 104 | 0.396 |
| 105 | 105 | 0.0712 |
| 106 | 106 | 0.0189 |
| 107 | 107 | 0.0152 |
| 108 | 108 | 0.527 |
| 109 | 109 | 0.00661 |
| 11 | 11 | 0.144 |
| 110 | 110 | 0.109 |
| 111 | 111 | 0.789 |
| 112 | 112 | 0.299 |
| 113 | 113 | 0.424 |
| 114 | 114 | 0.662 |
| 115 | 115 | 0.15 |
| 116 | 116 | 0.183 |
| 117 | 117 | 0.433 |
| 118 | 118 | 0.877 |
| 119 | 119 | 0.185 |
| 12 | 12 | 0.247 |
| 120 | 120 | 0.37 |
| 121 | 121 | 0.127 |
| 122 | 122 | 0.0167 |
| 123 | 123 | 0.411 |
| 124 | 124 | 0.421 |
| 125 | 125 | 0.87 |
| 126 | 126 | 0.82 |
| 127 | 127 | 0.0241 |
| 128 | 128 | 0.197 |
| 129 | 129 | 0.439 |
| 13 | 13 | 0.0488 |
| 130 | 130 | 0.327 |
| 131 | 131 | 0.369 |
| 132 | 132 | 0.711 |
| 133 | 133 | 0.0227 |
| 134 | 134 | 0.209 |
| 135 | 135 | 0.267 |
| 136 | 136 | 0.176 |
| 137 | 137 | 0.159 |
| 138 | 138 | 0.672 |
| 139 | 139 | 0.862 |
| 14 | 14 | 0.786 |
| 140 | 140 | 0.698 |
| 141 | 141 | 0.71 |
| 142 | 142 | 0.0256 |
| 143 | 143 | 0.618 |
| 144 | 144 | 0.249 |
| 145 | 145 | 0.189 |
| 146 | 146 | 0.00198 |
| 147 | 147 | 0.273 |
| 148 | 148 | 0.883 |
| 149 | 149 | 0.851 |
| 15 | 15 | 0.942 |
| 150 | 150 | 0.143 |
| 151 | 151 | 0.355 |
| 152 | 152 | 0.0368 |
| 153 | 153 | 0.896 |
| 154 | 154 | 0.443 |
| 155 | 155 | 0.546 |
| 156 | 156 | 0.746 |
| 157 | 157 | 0.998 |
| 158 | 158 | 0.244 |
| 159 | 159 | 0.76 |
| 16 | 16 | 0.0706 |
| 160 | 160 | 0.186 |
| 161 | 161 | 0.396 |
| 162 | 162 | 0.0859 |
| 163 | 163 | 0.845 |
| 164 | 164 | 0.75 |
| 165 | 165 | 0.526 |
| 166 | 166 | 0.218 |
| 167 | 167 | 0.269 |
| 168 | 168 | 0.545 |
| 169 | 169 | 0.0686 |
| 17 | 17 | 0.108 |
| 18 | 18 | 0.659 |
| 19 | 19 | 0.46 |
| 2 | 2 | 0.113 |
| 20 | 20 | 0.671 |
| 21 | 21 | 0.673 |
| 22 | 22 | 0.147 |
| 23 | 23 | 0.333 |
| 24 | 24 | 0.0413 |
| 25 | 25 | 0.971 |
| 26 | 26 | 0.0696 |
| 27 | 27 | 0.205 |
| 28 | 28 | 0.924 |
| 29 | 29 | 0.735 |
| 3 | 3 | 0.734 |
| 30 | 30 | 0.125 |
| 31 | 31 | 0.674 |
| 32 | 32 | 0.622 |
| 33 | 33 | 0.236 |
| 34 | 34 | 0.326 |
| 35 | 35 | 0.49 |
| 36 | 36 | 0.596 |
| 37 | 37 | 0.22 |
| 38 | 38 | 0.372 |
| 39 | 39 | 0.198 |
| 4 | 4 | 0.605 |
| 40 | 40 | 0.0134 |
| 41 | 41 | 0.879 |
| 42 | 42 | 0.983 |
| 43 | 43 | 0.497 |
| 44 | 44 | 0.924 |
| 45 | 45 | 0.0774 |
| 46 | 46 | 0.387 |
| 47 | 47 | 0.33 |
| 48 | 48 | 0.113 |
| 49 | 49 | 0.909 |
| 5 | 5 | 0.389 |
| 50 | 50 | 0.422 |
| 51 | 51 | 0.622 |
| 52 | 52 | 0.296 |
| 53 | 53 | 0.517 |
| 54 | 54 | 0.773 |
| 55 | 55 | 0.781 |
| 56 | 56 | 0.419 |
| 57 | 57 | 0.691 |
| 58 | 58 | 0.879 |
| 59 | 59 | 0.0564 |
| 6 | 6 | 0.203 |
| 60 | 60 | 0.259 |
| 61 | 61 | 0.928 |
| 62 | 62 | 0.931 |
| 63 | 63 | 0.184 |
| 64 | 64 | 0.367 |
| 65 | 65 | 0.158 |
| 66 | 66 | 0.557 |
| 67 | 67 | 0.639 |
| 68 | 68 | 0.885 |
| 69 | 69 | 0.117 |
| 7 | 7 | 0.388 |
| 70 | 70 | 0.0472 |
| 71 | 71 | 0.353 |
| 72 | 72 | 0.806 |
| 73 | 73 | 0.023 |
| 74 | 74 | 0.0907 |
| 75 | 75 | 0.449 |
| 76 | 76 | 0.814 |
| 77 | 77 | 0.018 |
| 78 | 78 | 0.144 |
| 79 | 79 | 0.99 |
| 8 | 8 | 0.14 |
| 80 | 80 | 0.898 |
| 81 | 81 | 0.745 |
| 82 | 82 | 0.78 |
| 83 | 83 | 0.859 |
| 84 | 84 | 0.72 |
| 85 | 85 | 0.371 |
| 86 | 86 | 0.919 |
| 87 | 87 | 0.0138 |
| 88 | 88 | 0.519 |
| 89 | 89 | 0.198 |
| 9 | 9 | 0.437 |
| 90 | 90 | 0.0036 |
| 91 | 91 | 0.725 |
| 92 | 92 | 0.769 |
| 93 | 93 | 0.72 |
| 94 | 94 | 0.688 |
| 95 | 95 | 0.141 |
| 96 | 96 | 0.761 |
| 97 | 97 | 0.741 |
| 98 | 98 | 0.287 |
| 99 | 99 | 0.0305 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11993
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)
