FF:11380-118B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005628 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008279;DRR009151;DRZ000576;DRZ001961;DRZ011926;DRZ013311 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.30!224.31!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.84!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.98!95.25!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.92!109.52!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.87!73.02!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.84!83.53!FOXF1;;chr9:132427972..132428056,+!p1@PRRX2!1.78!76.17!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.71!134.91!TWIST1;;chr1:170632477..170632506,+!p6@PRRX1!1.58!36.81!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.56!47.63!FOXF2;;chr1:170633262..170633285,+!p3@PRRX1!1.55!39.51!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.74!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.48!78.42!OSR1;;chr2:200322654..200322707,-!p2@SATB2!1.48!41.92!SATB2;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.87!MSX1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.44!HEYL;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.95!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.69!SIX1;;chr1:170632439..170632465,+!p11@PRRX1!1.40!23.89!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.38!22.84!SIX2;;chr2:46524537..46524553,+!p1@EPAS1!1.35!2002.52!EPAS1;;chr9:96717629..96717644,-!p1@BARX1!1.31!19.38!BARX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.30!24.04!TFAP2C;;chr1:170632137..170632172,+!p10@PRRX1!1.30!18.93!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.75!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.29!24.34!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.23!PRRX1;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.14!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!1.26!38.31!NR4A3;;chr7:44143925..44143970,+!p1@AEBP1!1.23!348.25!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.21!38.01!TWIST1;;chr8:72756667..72756736,-!p2@MSC!1.20!23.29!MSC;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.12!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.14!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.17!13.67!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.17!13.67!DLX5;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.09!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.17!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!1.13!21.78!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.51!TWIST2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.32!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!1.11!12.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.10!19.38!TCF12;;chr10:131762504..131762555,-!p1@EBF3!1.10!11.72!EBF3;;chr6:1389989..1390019,+!p2@FOXF2!1.10!11.57!FOXF2;;chr8:72756267..72756296,-!p4@MSC!1.09!16.83!MSC;;chr9:77112244..77112262,+!p1@RORB!1.09!12.62!RORB;;chr8:25902876..25902936,-!p1@EBF2!1.09!11.27!EBF2;;chr11:34642612..34642646,+!p1@EHF!1.09!11.27!EHF;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.28!AEBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.06!131.91!NR4A1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.87!MSC;;chr14:37131058..37131139,+!p1@PAX9!1.06!10.52!PAX9;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.89!NFATC4;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.13!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.04!9.92!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.74!FOXC2;;chr1:170632762..170632786,+!p13@PRRX1!1.02!9.46!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.01!9.16!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.99!8.86!LHX8;;chr1:170632723..170632739,+!p8@PRRX1!0.99!8.71!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.97!92.70!AHR;;chr5:321810..321877,+!p1@AHRR!0.97!27.19!AHRR;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!50.03!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.61!FOXD1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.77!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.62!AEBP1;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.36!FOXF2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.22!ID4;;chr12:80085061..80085119,-!p6@PAWR!0.91!11.72!PAWR;;chr5:2751762..2751784,-!p1@IRX2!0.91!7.21!IRX2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.91!ZFY;;chr12:53614115..53614154,-!p1@RARG!0.89!37.71!RARG;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.52!NR4A3;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.85!ZNF521;;chr2:45236579..45236596,-!p2@SIX2!0.86!6.31!SIX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.84!10.07!FOXQ1;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.86!KDM5D;;chr2:191878874..191878938,-!p1@STAT1!0.83!332.93!STAT1;;chr8:72756063..72756125,-!p1@MSC!0.83!12.32!MSC;;chr10:28035112..28035130,-!p5@MKX!0.83!5.71!MKX;;chr2:172949484..172949522,+!p1@DLX1!0.83!5.71!DLX1;;chr7:17338239..17338262,+!p2@AHR!0.82!44.32!AHR;;chr7:17338324..17338341,+!p3@AHR!0.82!19.83!AHR;;chr9:102584278..102584285,+!p5@NR4A3!0.82!5.56!NR4A3;;chr2:119604456..119604501,-!p2@EN1!0.80!5.26!EN1;;chr12:115122318..115122331,-!p2@TBX3!0.80!5.26!TBX3;;chr12:53625966..53626012,-!p2@RARG!0.79!14.42!RARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.11!KCNIP3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.23!KLF9;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.11!OSR2;;chr2:172950227..172950249,+!p2@DLX1!0.78!4.96!DLX1;;chr1:170633194..170633205,+!p18@PRRX1!0.78!4.96!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.79!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr11:65687222..65687240,+!p7@DRAP1!0.77!6.46!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.76!8.26!FOXD1;;chr10:28032421..28032494,-!p2@MKX!0.76!4.81!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.76!4.81!TSC22D1;;chr1:170632325..170632339,+!p24@PRRX1!0.76!4.81!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!4.96!GLIS1;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.66!DLX5;;chr10:28034772..28034783,-!p4@MKX!0.75!4.66!MKX;;chr12:52437488..52437507,+!p2@NR4A1!0.75!4.66!NR4A1;;chr11:12696002..12696022,+!p2@TEAD1!0.74!11.87!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.16!NR4A3;;chr3:141105705..141105770,+!p4@ZBTB38!0.74!5.56!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.74!4.51!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.51!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.73!21.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.62!HMGA2;;chr11:615570..615721,-!p2@IRF7!0.73!9.31!IRF7;;chr5:134369905..134369972,-!p1@PITX1!0.73!7.06!PITX1;;chr2:191878812..191878823,-!p2@STAT1!0.73!5.71!STAT1;;chr14:95236440..95236465,-!p1@GSC!0.73!4.36!GSC;;chr8:48650715..48650735,-!p1@CEBPD!0.72!608.76!CEBPD;;chr9:4300050..4300118,-!p1@GLIS3!0.72!30.95!GLIS3;;chr16:79634624..79634642,-!p1@MAF!0.72!18.33!MAF;;chr10:28035133..28035148,-!p3@MKX!0.72!4.21!MKX;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.71!27.64!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.38!DRAP1;;chr2:46602879..46602899,+!p8@EPAS1!0.71!5.11!EPAS1;;chr7:44143738..44143760,+!p4@AEBP1!0.71!4.81!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.70!48.68!MAFF;;chr9:73028814..73028895,-!p1@KLF9!0.70!45.07!KLF9;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.56!TEAD1;;chr10:28035155..28035166,-!p8@MKX!0.70!4.06!MKX;;chr1:170632414..170632421,+!p28@PRRX1!0.70!4.06!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.69!23.14!HIF1A;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.56!STAT4;;chr2:46602901..46602926,+!p7@EPAS1!0.69!5.41!EPAS1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.91!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.68!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.68!9.01!TSC22D1;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr8:60031934..60031986,-!p6@TOX!0.68!3.76!TOX;;chr2:172967242..172967265,-!p2@DLX2!0.68!3.76!DLX2;;chr1:170632647..170632659,+!p17@PRRX1!0.68!3.76!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.68!3.76!RUNX3;;chr9:96717678..96717689,-!p2@BARX1!0.68!3.76!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.67!128.45!HMGA1;;chr1:200379104..200379128,-!p2@ZNF281!0.67!9.92!ZNF281;;chr16:79633894..79633954,-!p3@MAF!0.67!7.66!MAF;;chr10:63809106..63809127,+!p1@ARID5B!0.66!56.19!ARID5B;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.66!HIF1A;;chr12:53625846..53625861,-!p6@RARG!0.66!3.61!RARG;;chr1:170632051..170632081,+!p16@PRRX1!0.66!3.61!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.61!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.66!3.61!PRRX1;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.61!SATB2;;chr17:59477266..59477273,+!p6@TBX2!0.66!3.61!TBX2;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.61!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!0.65!4.06!SIX1;;chr19:45504688..45504782,+!p1@RELB!0.64!23.89!RELB;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.11!IRX5;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.77!ZNF219;;chr11:65687158..65687216,+!p4@DRAP1!0.63!21.93!DRAP1;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.33!ARID5B;;chr1:8763440..8763460,-!p2@RERE!0.63!19.23!RERE;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.91!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.61!SHOX2;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.31!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.15!PAWR;;chr8:72756251..72756262,-!p12@MSC!0.62!3.15!MSC;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.58!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.61!8.71!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.61!5.71!FOSL2;;chr3:141121847..141121868,+!p5@ZBTB38!0.61!5.11!ZBTB38;;chr19:33865009..33865090,+!p3@CEBPG!0.61!4.36!CEBPG;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.44!ZMAT3;;chr19:36545128..36545203,-!p1@THAP8!0.60!16.53!THAP8;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.17!CREB5;;chr10:31607702..31607755,+!p3@ZEB1!0.60!3.61!ZEB1;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.00!IRX1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.46!JDP2;;chr3:71114066..71114114,-!p1@FOXP1!0.59!71.96!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!0.59!5.26!MSX2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.85!IRX1;;chr14:37126765..37126799,+!p2@PAX9!0.59!2.85!PAX9;;chr12:52430894..52430952,+!p3@NR4A1!0.58!6.01!NR4A1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!175.63!NFE2L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.20!GLIS2;;chr17:17726907..17726958,-!p2@SREBF1!0.57!20.28!SREBF1;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.70!NFE2L1;;chr2:119605214..119605230,-!p1@EN1!0.57!2.70!EN1;;chr2:45236648..45236659,-!p5@SIX2!0.57!2.70!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.57!2.70!CREB3L1;;chr10:3128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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.30!224.31!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.84!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.98!95.25!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.92!109.52!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.87!73.02!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.84!83.53!FOXF1;;chr9:132427972..132428056,+!p1@PRRX2!1.78!76.17!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.71!134.91!TWIST1;;chr1:170632477..170632506,+!p6@PRRX1!1.58!36.81!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.56!47.63!FOXF2;;chr1:170633262..170633285,+!p3@PRRX1!1.55!39.51!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.74!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.48!78.42!OSR1;;chr2:200322654..200322707,-!p2@SATB2!1.48!41.92!SATB2;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.87!MSX1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.44!HEYL;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.95!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.69!SIX1;;chr1:170632439..170632465,+!p11@PRRX1!1.40!23.89!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.38!22.84!SIX2;;chr2:46524537..46524553,+!p1@EPAS1!1.35!2002.52!EPAS1;;chr9:96717629..96717644,-!p1@BARX1!1.31!19.38!BARX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.30!24.04!TFAP2C;;chr1:170632137..170632172,+!p10@PRRX1!1.30!18.93!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.75!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.29!24.34!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.23!PRRX1;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.14!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!1.26!38.31!NR4A3;;chr7:44143925..44143970,+!p1@AEBP1!1.23!348.25!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.21!38.01!TWIST1;;chr8:72756667..72756736,-!p2@MSC!1.20!23.29!MSC;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.12!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.14!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.17!13.67!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.17!13.67!DLX5;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.09!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.17!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!1.13!21.78!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.51!TWIST2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.32!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!1.11!12.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.10!19.38!TCF12;;chr10:131762504..131762555,-!p1@EBF3!1.10!11.72!EBF3;;chr6:1389989..1390019,+!p2@FOXF2!1.10!11.57!FOXF2;;chr8:72756267..72756296,-!p4@MSC!1.09!16.83!MSC;;chr9:77112244..77112262,+!p1@RORB!1.09!12.62!RORB;;chr8:25902876..25902936,-!p1@EBF2!1.09!11.27!EBF2;;chr11:34642612..34642646,+!p1@EHF!1.09!11.27!EHF;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.28!AEBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.06!131.91!NR4A1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.87!MSC;;chr14:37131058..37131139,+!p1@PAX9!1.06!10.52!PAX9;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.89!NFATC4;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.13!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.04!9.92!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.74!FOXC2;;chr1:170632762..170632786,+!p13@PRRX1!1.02!9.46!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.01!9.16!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.99!8.86!LHX8;;chr1:170632723..170632739,+!p8@PRRX1!0.99!8.71!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.97!92.70!AHR;;chr5:321810..321877,+!p1@AHRR!0.97!27.19!AHRR;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!50.03!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.61!FOXD1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.77!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.62!AEBP1;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.36!FOXF2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.22!ID4;;chr12:80085061..80085119,-!p6@PAWR!0.91!11.72!PAWR;;chr5:2751762..2751784,-!p1@IRX2!0.91!7.21!IRX2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.91!ZFY;;chr12:53614115..53614154,-!p1@RARG!0.89!37.71!RARG;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.52!NR4A3;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.85!ZNF521;;chr2:45236579..45236596,-!p2@SIX2!0.86!6.31!SIX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.84!10.07!FOXQ1;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.86!KDM5D;;chr2:191878874..191878938,-!p1@STAT1!0.83!332.93!STAT1;;chr8:72756063..72756125,-!p1@MSC!0.83!12.32!MSC;;chr10:28035112..28035130,-!p5@MKX!0.83!5.71!MKX;;chr2:172949484..172949522,+!p1@DLX1!0.83!5.71!DLX1;;chr7:17338239..17338262,+!p2@AHR!0.82!44.32!AHR;;chr7:17338324..17338341,+!p3@AHR!0.82!19.83!AHR;;chr9:102584278..102584285,+!p5@NR4A3!0.82!5.56!NR4A3;;chr2:119604456..119604501,-!p2@EN1!0.80!5.26!EN1;;chr12:115122318..115122331,-!p2@TBX3!0.80!5.26!TBX3;;chr12:53625966..53626012,-!p2@RARG!0.79!14.42!RARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.11!KCNIP3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.23!KLF9;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.11!OSR2;;chr2:172950227..172950249,+!p2@DLX1!0.78!4.96!DLX1;;chr1:170633194..170633205,+!p18@PRRX1!0.78!4.96!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.79!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr11:65687222..65687240,+!p7@DRAP1!0.77!6.46!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.76!8.26!FOXD1;;chr10:28032421..28032494,-!p2@MKX!0.76!4.81!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.76!4.81!TSC22D1;;chr1:170632325..170632339,+!p24@PRRX1!0.76!4.81!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!4.96!GLIS1;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.66!DLX5;;chr10:28034772..28034783,-!p4@MKX!0.75!4.66!MKX;;chr12:52437488..52437507,+!p2@NR4A1!0.75!4.66!NR4A1;;chr11:12696002..12696022,+!p2@TEAD1!0.74!11.87!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.16!NR4A3;;chr3:141105705..141105770,+!p4@ZBTB38!0.74!5.56!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.74!4.51!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.51!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.73!21.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.62!HMGA2;;chr11:615570..615721,-!p2@IRF7!0.73!9.31!IRF7;;chr5:134369905..134369972,-!p1@PITX1!0.73!7.06!PITX1;;chr2:191878812..191878823,-!p2@STAT1!0.73!5.71!STAT1;;chr14:95236440..95236465,-!p1@GSC!0.73!4.36!GSC;;chr8:48650715..48650735,-!p1@CEBPD!0.72!608.76!CEBPD;;chr9:4300050..4300118,-!p1@GLIS3!0.72!30.95!GLIS3;;chr16:79634624..79634642,-!p1@MAF!0.72!18.33!MAF;;chr10:28035133..28035148,-!p3@MKX!0.72!4.21!MKX;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.71!27.64!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.38!DRAP1;;chr2:46602879..46602899,+!p8@EPAS1!0.71!5.11!EPAS1;;chr7:44143738..44143760,+!p4@AEBP1!0.71!4.81!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.70!48.68!MAFF;;chr9:73028814..73028895,-!p1@KLF9!0.70!45.07!KLF9;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.56!TEAD1;;chr10:28035155..28035166,-!p8@MKX!0.70!4.06!MKX;;chr1:170632414..170632421,+!p28@PRRX1!0.70!4.06!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.69!23.14!HIF1A;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.56!STAT4;;chr2:46602901..46602926,+!p7@EPAS1!0.69!5.41!EPAS1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.91!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.68!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.68!9.01!TSC22D1;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr8:60031934..60031986,-!p6@TOX!0.68!3.76!TOX;;chr2:172967242..172967265,-!p2@DLX2!0.68!3.76!DLX2;;chr1:170632647..170632659,+!p17@PRRX1!0.68!3.76!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.68!3.76!RUNX3;;chr9:96717678..96717689,-!p2@BARX1!0.68!3.76!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.67!128.45!HMGA1;;chr1:200379104..200379128,-!p2@ZNF281!0.67!9.92!ZNF281;;chr16:79633894..79633954,-!p3@MAF!0.67!7.66!MAF;;chr10:63809106..63809127,+!p1@ARID5B!0.66!56.19!ARID5B;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.66!HIF1A;;chr12:53625846..53625861,-!p6@RARG!0.66!3.61!RARG;;chr1:170632051..170632081,+!p16@PRRX1!0.66!3.61!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.61!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.66!3.61!PRRX1;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.61!SATB2;;chr17:59477266..59477273,+!p6@TBX2!0.66!3.61!TBX2;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.61!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!0.65!4.06!SIX1;;chr19:45504688..45504782,+!p1@RELB!0.64!23.89!RELB;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.11!IRX5;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.77!ZNF219;;chr11:65687158..65687216,+!p4@DRAP1!0.63!21.93!DRAP1;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.33!ARID5B;;chr1:8763440..8763460,-!p2@RERE!0.63!19.23!RERE;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.91!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.61!SHOX2;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.31!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.15!PAWR;;chr8:72756251..72756262,-!p12@MSC!0.62!3.15!MSC;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.58!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.61!8.71!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.61!5.71!FOSL2;;chr3:141121847..141121868,+!p5@ZBTB38!0.61!5.11!ZBTB38;;chr19:33865009..33865090,+!p3@CEBPG!0.61!4.36!CEBPG;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.44!ZMAT3;;chr19:36545128..36545203,-!p1@THAP8!0.60!16.53!THAP8;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.17!CREB5;;chr10:31607702..31607755,+!p3@ZEB1!0.60!3.61!ZEB1;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.00!IRX1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.46!JDP2;;chr3:71114066..71114114,-!p1@FOXP1!0.59!71.96!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!0.59!5.26!MSX2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.85!IRX1;;chr14:37126765..37126799,+!p2@PAX9!0.59!2.85!PAX9;;chr12:52430894..52430952,+!p3@NR4A1!0.58!6.01!NR4A1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!175.63!NFE2L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.20!GLIS2;;chr17:17726907..17726958,-!p2@SREBF1!0.57!20.28!SREBF1;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.70!NFE2L1;;chr2:119605214..119605230,-!p1@EN1!0.57!2.70!EN1;;chr2:45236648..45236659,-!p5@SIX2!0.57!2.70!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.57!2.70!CREB3L1;;chr10:3128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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11380-118B3 | |id=FF:11380-118B3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |||
|library_id=CNhs11996 | |||
|library_id_phase_based=2:CNhs11996 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11380 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11380 | |||
|name=Fibroblast - Periodontal Ligament, donor6 (PLH3) | |name=Fibroblast - Periodontal Ligament, donor6 (PLH3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11996,LSID837,release011,COMPLETED | |profile_hcage=CNhs11996,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=18.9838 | |rna_weight_ug=18.9838 | ||
|sample_age=22 | |sample_age=22 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=periodontal ligament | |sample_tissue=periodontal ligament | ||
|top_motifs=ESR1:1.81258908793;FOXL1:1.79411405024;TFAP4:1.57476926271;GLI1..3:1.53970865509;TFAP2{A,C}:1.53279415637;MAZ:1.42650682166;MYBL2:1.35556688214;ZNF238:1.35278429337;TFCP2:1.27797481;ALX4:1.26680508878;NFATC1..3:1.25498992692;MTE{core}:1.24761247046;TFAP2B:1.23513874702;HMGA1,2:1.23270763891;TFDP1:1.22821192782;RXR{A,B,G}:1.20839160757;UFEwm:1.10846098123;HES1:1.09809480263;XCPE1{core}:1.07745147115;HIC1:1.06747884559;EBF1:1.05401999343;EGR1..3:1.01687026789;PATZ1:1.00454294972;TAL1_TCF{3,4,12}:0.999234253826;TEAD1:0.99187157728;ATF6:0.950897824564;TLX1..3_NFIC{dimer}:0.943277437962;GTF2A1,2:0.94050321117;XBP1:0.928457419934;PPARG:0.890237796416;IRF1,2:0.868901288917;PAX1,9:0.864316897335;SPZ1:0.851571768692;MAFB:0.798765314225;NKX2-2,8:0.787123496694;GZF1:0.77660670058;MZF1:0.774794105647;TP53:0.769284734149;HAND1,2:0.748058419264;EVI1:0.740905215484;ZNF423:0.736502780328;SRF:0.73592943832;MTF1:0.722552709085;KLF4:0.669489033281;GTF2I:0.658203629233;IKZF1:0.644340293542;SP1:0.62971127852;HMX1:0.600538105336;PAX5:0.580030996595;LHX3,4:0.565406302979;SREBF1,2:0.531215357931;ZBTB6:0.525272642149;PAX3,7:0.480090564323;NKX3-1:0.476836169934;ZIC1..3:0.470798843906;NFIX:0.470309263624;ZFP161:0.460274275003;GFI1B:0.44930129825;GCM1,2:0.438194418459;bHLH_family:0.425065695691;MYFfamily:0.420530938758;STAT2,4,6:0.416580919789;NHLH1,2:0.399906121102;RREB1:0.395507597721;NANOG{mouse}:0.394356634091;NFE2L2:0.390703967264;TBP:0.383360504929;MED-1{core}:0.382569843187;PRDM1:0.367730672621;HBP1_HMGB_SSRP1_UBTF:0.360847466593;TBX4,5:0.359346304294;HIF1A:0.3111501651;FOXO1,3,4:0.282165199148;NR6A1:0.263065262451;IRF7:0.231629475723;SOX17:0.205355447499;NR3C1:0.204097962832;EN1,2:0.157997996173;NFE2L1:0.146385728854;JUN:0.128209051497;REST:0.0831292162226;GATA4:0.0541980484215;ZNF148:0.0525741470985;AHR_ARNT_ARNT2:0.0366825079797;CREB1:0.0306654199816;MEF2{A,B,C,D}:0.0292085862461;MYB:0.0273888451052;NKX2-3_NKX2-5:0.0198123884681;HOX{A4,D4}:0.00424051523889;HNF1A:-0.0140745713317;HLF:-0.0149004386423;POU6F1:-0.0338429511092;RXRA_VDR{dimer}:-0.0396326375347;GFI1:-0.0440898218485;POU3F1..4:-0.0489593704553;SOX5:-0.0540835245393;BACH2:-0.0551993079385;FOXD3:-0.0656050158249;CEBPA,B_DDIT3:-0.0663834438326;BREu{core}:-0.0757994914459;FOS_FOS{B,L1}_JUN{B,D}:-0.0820269898019;NFKB1_REL_RELA:-0.0849178018661;CDC5L:-0.0892740437725;ESRRA:-0.11046723953;HOX{A6,A7,B6,B7}:-0.112364589314;NKX2-1,4:-0.114222241147;ATF5_CREB3:-0.130378398082;NKX3-2:-0.130800672367;TOPORS:-0.154379994035;NFE2:-0.18371014283;SMAD1..7,9:-0.191608375695;STAT5{A,B}:-0.201649237327;RUNX1..3:-0.204110662648;HNF4A_NR2F1,2:-0.205029033526;ZNF143:-0.210369995529;FOX{D1,D2}:-0.213903981915;FOXA2:-0.216557034748;TEF:-0.232445157269;FOSL2:-0.232877083637;PAX8:-0.24683395856;NFIL3:-0.26325377271;CRX:-0.269641484399;ADNP_IRX_SIX_ZHX:-0.278699505711;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.290231127915;E2F1..5:-0.306168162299;FOX{F1,F2,J1}:-0.332114665274;AR:-0.348078679795;DBP:-0.360161695465;LEF1_TCF7_TCF7L1,2:-0.366198572152;RFX1:-0.368683432857;ATF4:-0.378662042937;AIRE:-0.389404399945;HOX{A5,B5}:-0.389546188469;DMAP1_NCOR{1,2}_SMARC:-0.39160591058;ZNF384:-0.403440740608;ELK1,4_GABP{A,B1}:-0.403595730973;NKX6-1,2:-0.418666226807;PITX1..3:-0.459871383472;ONECUT1,2:-0.464371364072;NR1H4:-0.475126418949;PBX1:-0.48057385735;POU5F1:-0.486812278521;ETS1,2:-0.494022104087;PAX4:-0.502646846316;YY1:-0.50452014951;POU1F1:-0.506477823109;PRRX1,2:-0.517963569256;NRF1:-0.519965789659;BPTF:-0.56246010747;SPIB:-0.566151744187;RBPJ:-0.578582106099;HSF1,2:-0.584249821819;SPI1:-0.603816198661;RORA:-0.627875202578;PAX2:-0.632007824049;NR5A1,2:-0.641854507221;T:-0.684891654757;CUX2:-0.699047306477;TGIF1:-0.708821820791;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.719748896265;LMO2:-0.722443724923;RFX2..5_RFXANK_RFXAP:-0.730209996754;ARID5B:-0.735326531844;ATF2:-0.736708867207;ELF1,2,4:-0.752781439842;FOXM1:-0.792518638614;FOX{I1,J2}:-0.79661720491;FOXN1:-0.810532497981;SOX2:-0.827125754047;NFY{A,B,C}:-0.827999490668;MYOD1:-0.830625394649;FOXP1:-0.836038407398;POU2F1..3:-0.899203163349;HOXA9_MEIS1:-0.906050614352;CDX1,2,4:-0.914439182387;GATA6:-0.990848894674;ZEB1:-0.991054636784;TLX2:-0.992086712426;PDX1:-1.00882178133;OCT4_SOX2{dimer}:-1.01364525624;EP300:-1.0310717271;ALX1:-1.03846492152;VSX1,2:-1.04679325986;FOXQ1:-1.05120583352;SOX{8,9,10}:-1.06264776699;FOXP3:-1.06529775922;SNAI1..3:-1.07701684401;STAT1,3:-1.11836011541;IKZF2:-1.17737876432;PAX6:-1.19885326721;ZBTB16:-1.23812233786;NANOG:-1.8010737083 | |top_motifs=ESR1:1.81258908793;FOXL1:1.79411405024;TFAP4:1.57476926271;GLI1..3:1.53970865509;TFAP2{A,C}:1.53279415637;MAZ:1.42650682166;MYBL2:1.35556688214;ZNF238:1.35278429337;TFCP2:1.27797481;ALX4:1.26680508878;NFATC1..3:1.25498992692;MTE{core}:1.24761247046;TFAP2B:1.23513874702;HMGA1,2:1.23270763891;TFDP1:1.22821192782;RXR{A,B,G}:1.20839160757;UFEwm:1.10846098123;HES1:1.09809480263;XCPE1{core}:1.07745147115;HIC1:1.06747884559;EBF1:1.05401999343;EGR1..3:1.01687026789;PATZ1:1.00454294972;TAL1_TCF{3,4,12}:0.999234253826;TEAD1:0.99187157728;ATF6:0.950897824564;TLX1..3_NFIC{dimer}:0.943277437962;GTF2A1,2:0.94050321117;XBP1:0.928457419934;PPARG:0.890237796416;IRF1,2:0.868901288917;PAX1,9:0.864316897335;SPZ1:0.851571768692;MAFB:0.798765314225;NKX2-2,8:0.787123496694;GZF1:0.77660670058;MZF1:0.774794105647;TP53:0.769284734149;HAND1,2:0.748058419264;EVI1:0.740905215484;ZNF423:0.736502780328;SRF:0.73592943832;MTF1:0.722552709085;KLF4:0.669489033281;GTF2I:0.658203629233;IKZF1:0.644340293542;SP1:0.62971127852;HMX1:0.600538105336;PAX5:0.580030996595;LHX3,4:0.565406302979;SREBF1,2:0.531215357931;ZBTB6:0.525272642149;PAX3,7:0.480090564323;NKX3-1:0.476836169934;ZIC1..3:0.470798843906;NFIX:0.470309263624;ZFP161:0.460274275003;GFI1B:0.44930129825;GCM1,2:0.438194418459;bHLH_family:0.425065695691;MYFfamily:0.420530938758;STAT2,4,6:0.416580919789;NHLH1,2:0.399906121102;RREB1:0.395507597721;NANOG{mouse}:0.394356634091;NFE2L2:0.390703967264;TBP:0.383360504929;MED-1{core}:0.382569843187;PRDM1:0.367730672621;HBP1_HMGB_SSRP1_UBTF:0.360847466593;TBX4,5:0.359346304294;HIF1A:0.3111501651;FOXO1,3,4:0.282165199148;NR6A1:0.263065262451;IRF7:0.231629475723;SOX17:0.205355447499;NR3C1:0.204097962832;EN1,2:0.157997996173;NFE2L1:0.146385728854;JUN:0.128209051497;REST:0.0831292162226;GATA4:0.0541980484215;ZNF148:0.0525741470985;AHR_ARNT_ARNT2:0.0366825079797;CREB1:0.0306654199816;MEF2{A,B,C,D}:0.0292085862461;MYB:0.0273888451052;NKX2-3_NKX2-5:0.0198123884681;HOX{A4,D4}:0.00424051523889;HNF1A:-0.0140745713317;HLF:-0.0149004386423;POU6F1:-0.0338429511092;RXRA_VDR{dimer}:-0.0396326375347;GFI1:-0.0440898218485;POU3F1..4:-0.0489593704553;SOX5:-0.0540835245393;BACH2:-0.0551993079385;FOXD3:-0.0656050158249;CEBPA,B_DDIT3:-0.0663834438326;BREu{core}:-0.0757994914459;FOS_FOS{B,L1}_JUN{B,D}:-0.0820269898019;NFKB1_REL_RELA:-0.0849178018661;CDC5L:-0.0892740437725;ESRRA:-0.11046723953;HOX{A6,A7,B6,B7}:-0.112364589314;NKX2-1,4:-0.114222241147;ATF5_CREB3:-0.130378398082;NKX3-2:-0.130800672367;TOPORS:-0.154379994035;NFE2:-0.18371014283;SMAD1..7,9:-0.191608375695;STAT5{A,B}:-0.201649237327;RUNX1..3:-0.204110662648;HNF4A_NR2F1,2:-0.205029033526;ZNF143:-0.210369995529;FOX{D1,D2}:-0.213903981915;FOXA2:-0.216557034748;TEF:-0.232445157269;FOSL2:-0.232877083637;PAX8:-0.24683395856;NFIL3:-0.26325377271;CRX:-0.269641484399;ADNP_IRX_SIX_ZHX:-0.278699505711;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.290231127915;E2F1..5:-0.306168162299;FOX{F1,F2,J1}:-0.332114665274;AR:-0.348078679795;DBP:-0.360161695465;LEF1_TCF7_TCF7L1,2:-0.366198572152;RFX1:-0.368683432857;ATF4:-0.378662042937;AIRE:-0.389404399945;HOX{A5,B5}:-0.389546188469;DMAP1_NCOR{1,2}_SMARC:-0.39160591058;ZNF384:-0.403440740608;ELK1,4_GABP{A,B1}:-0.403595730973;NKX6-1,2:-0.418666226807;PITX1..3:-0.459871383472;ONECUT1,2:-0.464371364072;NR1H4:-0.475126418949;PBX1:-0.48057385735;POU5F1:-0.486812278521;ETS1,2:-0.494022104087;PAX4:-0.502646846316;YY1:-0.50452014951;POU1F1:-0.506477823109;PRRX1,2:-0.517963569256;NRF1:-0.519965789659;BPTF:-0.56246010747;SPIB:-0.566151744187;RBPJ:-0.578582106099;HSF1,2:-0.584249821819;SPI1:-0.603816198661;RORA:-0.627875202578;PAX2:-0.632007824049;NR5A1,2:-0.641854507221;T:-0.684891654757;CUX2:-0.699047306477;TGIF1:-0.708821820791;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.719748896265;LMO2:-0.722443724923;RFX2..5_RFXANK_RFXAP:-0.730209996754;ARID5B:-0.735326531844;ATF2:-0.736708867207;ELF1,2,4:-0.752781439842;FOXM1:-0.792518638614;FOX{I1,J2}:-0.79661720491;FOXN1:-0.810532497981;SOX2:-0.827125754047;NFY{A,B,C}:-0.827999490668;MYOD1:-0.830625394649;FOXP1:-0.836038407398;POU2F1..3:-0.899203163349;HOXA9_MEIS1:-0.906050614352;CDX1,2,4:-0.914439182387;GATA6:-0.990848894674;ZEB1:-0.991054636784;TLX2:-0.992086712426;PDX1:-1.00882178133;OCT4_SOX2{dimer}:-1.01364525624;EP300:-1.0310717271;ALX1:-1.03846492152;VSX1,2:-1.04679325986;FOXQ1:-1.05120583352;SOX{8,9,10}:-1.06264776699;FOXP3:-1.06529775922;SNAI1..3:-1.07701684401;STAT1,3:-1.11836011541;IKZF2:-1.17737876432;PAX6:-1.19885326721;ZBTB16:-1.23812233786;NANOG:-1.8010737083 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11380-118B3;search_select_hide=table117:FF:11380-118B3 | |||
}} | }} | ||
Latest revision as of 17:56, 4 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor6 (PLH3) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11996 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11996
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11996
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0215 |
| 10 | 10 | 0.169 |
| 100 | 100 | 0.436 |
| 101 | 101 | 0.168 |
| 102 | 102 | 0.132 |
| 103 | 103 | 0.382 |
| 104 | 104 | 0.48 |
| 105 | 105 | 0.153 |
| 106 | 106 | 0.988 |
| 107 | 107 | 0.528 |
| 108 | 108 | 0.721 |
| 109 | 109 | 0.348 |
| 11 | 11 | 0.147 |
| 110 | 110 | 0.0619 |
| 111 | 111 | 0.14 |
| 112 | 112 | 0.656 |
| 113 | 113 | 0.183 |
| 114 | 114 | 0.0621 |
| 115 | 115 | 0.0249 |
| 116 | 116 | 0.597 |
| 117 | 117 | 0.0784 |
| 118 | 118 | 0.0575 |
| 119 | 119 | 0.0715 |
| 12 | 12 | 0.26 |
| 120 | 120 | 0.805 |
| 121 | 121 | 0.327 |
| 122 | 122 | 0.237 |
| 123 | 123 | 0.00189 |
| 124 | 124 | 0.209 |
| 125 | 125 | 0.859 |
| 126 | 126 | 0.465 |
| 127 | 127 | 0.732 |
| 128 | 128 | 0.483 |
| 129 | 129 | 0.161 |
| 13 | 13 | 0.0431 |
| 130 | 130 | 0.22 |
| 131 | 131 | 0.751 |
| 132 | 132 | 0.398 |
| 133 | 133 | 0.259 |
| 134 | 134 | 0.0514 |
| 135 | 135 | 0.975 |
| 136 | 136 | 0.17 |
| 137 | 137 | 0.993 |
| 138 | 138 | 0.487 |
| 139 | 139 | 0.011 |
| 14 | 14 | 0.361 |
| 140 | 140 | 0.196 |
| 141 | 141 | 0.00279 |
| 142 | 142 | 0.997 |
| 143 | 143 | 0.734 |
| 144 | 144 | 0.487 |
| 145 | 145 | 0.431 |
| 146 | 146 | 0.657 |
| 147 | 147 | 0.287 |
| 148 | 148 | 0.306 |
| 149 | 149 | 0.806 |
| 15 | 15 | 0.134 |
| 150 | 150 | 0.527 |
| 151 | 151 | 0.635 |
| 152 | 152 | 0.0176 |
| 153 | 153 | 0.352 |
| 154 | 154 | 0.94 |
| 155 | 155 | 0.0272 |
| 156 | 156 | 0.641 |
| 157 | 157 | 0.0919 |
| 158 | 158 | 0.0135 |
| 159 | 159 | 0.434 |
| 16 | 16 | 0.684 |
| 160 | 160 | 0.211 |
| 161 | 161 | 0.419 |
| 162 | 162 | 0.792 |
| 163 | 163 | 0.76 |
| 164 | 164 | 0.708 |
| 165 | 165 | 0.643 |
| 166 | 166 | 0.0228 |
| 167 | 167 | 0.206 |
| 168 | 168 | 0.375 |
| 169 | 169 | 0.531 |
| 17 | 17 | 0.662 |
| 18 | 18 | 0.952 |
| 19 | 19 | 0.53 |
| 2 | 2 | 0.563 |
| 20 | 20 | 0.505 |
| 21 | 21 | 0.98 |
| 22 | 22 | 0.864 |
| 23 | 23 | 0.856 |
| 24 | 24 | 0.197 |
| 25 | 25 | 0.139 |
| 26 | 26 | 0.755 |
| 27 | 27 | 0.719 |
| 28 | 28 | 0.297 |
| 29 | 29 | 0.163 |
| 3 | 3 | 0.177 |
| 30 | 30 | 0.302 |
| 31 | 31 | 0.93 |
| 32 | 32 | 1.20706e-8 |
| 33 | 33 | 0.637 |
| 34 | 34 | 0.889 |
| 35 | 35 | 0.121 |
| 36 | 36 | 0.00886 |
| 37 | 37 | 0.468 |
| 38 | 38 | 0.232 |
| 39 | 39 | 0.805 |
| 4 | 4 | 0.288 |
| 40 | 40 | 0.0477 |
| 41 | 41 | 0.335 |
| 42 | 42 | 0.0967 |
| 43 | 43 | 0.37 |
| 44 | 44 | 0.666 |
| 45 | 45 | 0.875 |
| 46 | 46 | 0.267 |
| 47 | 47 | 0.032 |
| 48 | 48 | 0.0834 |
| 49 | 49 | 0.0965 |
| 5 | 5 | 0.421 |
| 50 | 50 | 0.62 |
| 51 | 51 | 0.655 |
| 52 | 52 | 0.639 |
| 53 | 53 | 0.15 |
| 54 | 54 | 0.867 |
| 55 | 55 | 0.878 |
| 56 | 56 | 0.428 |
| 57 | 57 | 0.185 |
| 58 | 58 | 0.199 |
| 59 | 59 | 0.518 |
| 6 | 6 | 0.948 |
| 60 | 60 | 0.643 |
| 61 | 61 | 0.399 |
| 62 | 62 | 0.233 |
| 63 | 63 | 0.865 |
| 64 | 64 | 0.177 |
| 65 | 65 | 0.894 |
| 66 | 66 | 0.365 |
| 67 | 67 | 0.987 |
| 68 | 68 | 0.22 |
| 69 | 69 | 0.933 |
| 7 | 7 | 0.0582 |
| 70 | 70 | 0.301 |
| 71 | 71 | 0.052 |
| 72 | 72 | 0.339 |
| 73 | 73 | 0.33 |
| 74 | 74 | 0.814 |
| 75 | 75 | 0.0711 |
| 76 | 76 | 0.911 |
| 77 | 77 | 0.993 |
| 78 | 78 | 0.0365 |
| 79 | 79 | 0.00651 |
| 8 | 8 | 0.456 |
| 80 | 80 | 0.292 |
| 81 | 81 | 0.312 |
| 82 | 82 | 0.0801 |
| 83 | 83 | 0.372 |
| 84 | 84 | 0.907 |
| 85 | 85 | 0.366 |
| 86 | 86 | 0.742 |
| 87 | 87 | 0.184 |
| 88 | 88 | 0.578 |
| 89 | 89 | 0.654 |
| 9 | 9 | 0.732 |
| 90 | 90 | 0.0663 |
| 91 | 91 | 0.218 |
| 92 | 92 | 0.505 |
| 93 | 93 | 0.394 |
| 94 | 94 | 0.223 |
| 95 | 95 | 0.531 |
| 96 | 96 | 0.214 |
| 97 | 97 | 0.468 |
| 98 | 98 | 0.145 |
| 99 | 99 | 0.06 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11996
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
