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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001134,UBERON:0002100,UBERON:0000483,UBERON:0000033,UBERON:0000926,UBERON:0000479,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0002036,UBERON:0002385,UBERON:0002049,UBERON:0005284,UBERON:0000486,UBERON:0003104,UBERON:0002200,UBERON:0006876,UBERON:0000914,UBERON:0005256,UBERON:0006598,UBERON:0007798,UBERON:0001015,UBERON:0002532,UBERON:0001017,UBERON:0002329,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0000924,UBERON:0004535,UBERON:0005743,UBERON:0000383,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0001009,UBERON:0006238,UBERON:0006601,UBERON:0006603,UBERON:0003082,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
|DRA_sample_Accession=CAGE@SAMD00005430
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000359,CL:0000222,CL:0002590,CL:0000355,CL:0000514
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005430
|accession_numbers=CAGE;DRX008477;DRR009349;DRZ000774;DRZ002159;DRZ012124;DRZ013509
|accession_numbers_RNASeq=sRNA-Seq;DRX037019;DRR041385;DRZ007027
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000170
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr15:83953397..83953425,-!p1@BNC1!1.67!52.80!BNC1;;chr11:61520075..61520136,+!p1@C11orf9!1.44!54.71!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!1.41!30.31!FOXF1;;chr15:42749722..42749739,-!p2@ZFP106!1.36!38.70!ZFP106;;chr4:174451370..174451387,-!p1@HAND2!1.31!19.63!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.26!17.35!TBX20;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.58!HIF3A;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.31!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.23!15.82!HAND2;;chr14:62162285..62162296,+!p3@HIF1A!1.19!73.96!HIF1A;;chr8:11561684..11561751,+!p1@GATA4!1.19!14.49!GATA4;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.55!TWIST1;;chr14:62162258..62162269,+!p2@HIF1A!1.10!110.76!HIF1A;;chr8:106330656..106330684,+!p1@ZFPM2!1.10!30.88!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!1.06!18.87!ZNF804A;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!16.97!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.03!9.72!TCF21;;chr5:92918919..92918942,+!p1@NR2F1!1.01!41.75!NR2F1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.97!8.39!SEBOX;;chr2:46524537..46524553,+!p1@EPAS1!0.96!816.85!EPAS1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!8.01!KDM5D;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.73!TBX18;;chr17:1959369..1959388,+!p2@HIC1!0.84!16.58!HIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.08!SNAI2;;chr3:150126759..150126784,+!p2@TSC22D2!0.83!27.83!TSC22D2;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.25!GATA6;;chr17:46622070..46622109,-!p1@HOXB2!0.83!13.34!HOXB2;;chr17:46655704..46655718,-!p2@HOXB4!0.83!8.96!HOXB4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.72!RUNX1T1;;chr8:37963466..37963506,+!p3@ASH2L!0.82!7.24!ASH2L;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.02!MEIS1;;chr12:104531823..104531849,-!p5@NFYB!0.81!12.01!NFYB;;chr15:83953373..83953386,-!p2@BNC1!0.81!5.53!BNC1;;chr17:46621937..46621966,-!p2@HOXB2!0.80!15.44!HOXB2;;chr11:12696071..12696086,+!p3@TEAD1!0.80!7.24!TEAD1;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.34!ZFY;;chr8:106330696..106330719,+!p2@ZFPM2!0.79!6.67!ZFPM2;;chr3:178789522..178789564,-!p2@ZMAT3!0.78!40.22!ZMAT3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.77!4.96!RUNX1T1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.77!4.96!SEBOX;;chr2:231084820..231084836,-!p5@SP110!0.76!5.53!SP110;;chr3:147127142..147127168,+!p1@ZIC1!0.76!4.77!ZIC1;;chr7:28220198..28220269,-!p2@JAZF1!0.75!45.94!JAZF1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.58!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.75!4.58!ZIC1;;chr12:80085061..80085119,-!p6@PAWR!0.74!7.63!PAWR;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.67!NR2F2;;chr14:62213758..62213774,+!p8@HIF1A!0.74!5.91!HIF1A;;chr14:62162224..62162254,+!p1@HIF1A!0.73!712.39!HIF1A;;chr3:150126904..150126958,+!p7@TSC22D2!0.72!7.82!TSC22D2;;chr5:92918956..92918969,+!p4@NR2F1!0.72!4.77!NR2F1;;chr11:32457075..32457095,-!p1@WT1!0.72!4.19!WT1;;chr9:16870710..16870763,-!p1@BNC2!0.71!7.63!BNC2;;chr6:45296048..45296082,+!p1@RUNX2!0.71!4.77!RUNX2;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.60!SNAI2;;chr17:46622114..46622138,-!p4@HOXB2!0.70!6.48!HOXB2;;chr8:55370487..55370503,+!p1@SOX17!0.70!4.00!SOX17;;chr3:147111231..147111281,+!p3@ZIC1!0.70!4.00!ZIC1;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.68!TWIST1;;chr11:113930425..113930471,+!p1@ZBTB16!0.68!5.72!ZBTB16;;chr12:24715376..24715432,-!p1@SOX5!0.68!4.96!SOX5;;chr2:27357446..27357475,-!p2@PREB!0.66!13.92!PREB;;chr2:46524897..46524911,+!p2@EPAS1!0.66!11.06!EPAS1;;chr14:62203595..62203676,+!p4@HIF1A!0.66!7.24!HIF1A;;chr3:25469724..25469773,+!p1@RARB!0.66!5.53!RARB;;chr2:46602901..46602926,+!p7@EPAS1!0.66!4.96!EPAS1;;chr17:46675420..46675465,-!p3@HOXB6!0.66!4.19!HOXB6;;chr12:66218836..66218888,+!p1@HMGA2!0.65!37.74!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!0.65!17.35!PCBP3;;chr12:66218255..66218304,+!p3@HMGA2!0.65!10.48!HMGA2;;chr7:44143978..44143989,+!p2@AEBP1!0.65!6.86!AEBP1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.67!GATA6;;chr5:139492456..139492489,+!p7@PURA!0.65!3.43!PURA;;chr12:66218598..66218645,+!p2@HMGA2!0.63!17.35!HMGA2;;chr15:83953474..83953483,-!p3@BNC1!0.63!3.24!BNC1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!45.37!MLLT11;;chr9:4300050..4300118,-!p1@GLIS3!0.62!24.21!GLIS3;;chr5:92919100..92919135,+!p3@NR2F1!0.62!4.00!NR2F1;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.00!TBX18;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.62!3.43!GLIS1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.07!HIC1;;chr2:19558373..19558392,-!p1@OSR1!0.61!9.53!OSR1;;chr15:96869255..96869291,+!p6@NR2F2!0.61!6.10!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.77!GATA6;;chr4:174451350..174451363,-!p3@HAND2!0.61!3.05!HAND2;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.21!AEBP1;;chr7:17338266..17338282,+!p1@AHR!0.60!38.70!AHR;;chr2:66662895..66662907,+!p3@MEIS1!0.59!3.81!MEIS1;;chrY:21906761..21906810,-!p2@KDM5D!0.59!2.86!KDM5D;;chr2:145275162..145275202,-!p2@ZEB2!0.58!20.21!ZEB2;;chr15:57511609..57511651,+!p2@TCF12!0.58!5.15!TCF12;;chr8:72756667..72756736,-!p2@MSC!0.58!4.77!MSC;;chr3:178789993..178790049,-!p5@ZMAT3!0.58!4.38!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AD2;;chr3:141747459..141747475,-!p1@TFDP2!0.13!9.53!TFDP2;;chr9:94186131..94186174,-!p2@NFIL3!0.13!9.34!NFIL3;;chr12:133657477..133657529,+!p1@ZNF140!0.13!8.77!ZNF140;;chr5:139487363..139487444,+!p1@PURA!0.13!8.58!PURA;;chr17:17726907..17726958,-!p2@SREBF1!0.13!6.86!SREBF1;;chr2:145274900..145274934,-!p4@ZEB2!0.13!6.67!ZEB2;;chr2:178257401..178257432,-!p4@NFE2L2!0.13!6.10!NFE2L2;;chr19:38146320..38146401,-!p1@ZFP30!0.13!5.91!ZFP30;;chr2:28616358..28616380,+!p3@FOSL2!0.13!5.53!FOSL2;;chr9:35732561..35732587,+!p3@CREB3!0.13!4.38!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.13!4.19!TCF3;;chr19:12146483..12146546,-!p1@ZNF433!0.13!3.62!ZNF433;;chr19:37096194..37096235,+!p1@ZNF382!0.13!3.05!ZNF382;;chr19:36134528..36134563,+!p1@ETV2!0.13!2.67!ETV2;;chr19:46271505..46271575,-!p2@SIX5!0.13!2.29!SIX5;;chr22:50247528..50247568,+!p2@ZBED4!0.13!2.10!ZBED4;;chr16:3285049..3285081,-!p3@ZNF200!0.13!1.91!ZNF200;;chr11:62369383..62369399,-!p6@MTA2!0.13!1.91!MTA2;;chr12:48298765..48298783,-!p2@VDR!0.13!1.72!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.13!1.33!NFIX;;chr1:114302066..114302080,-!p2@PHTF1!0.13!1.33!PHTF1;;chr20:48807779..48807802,+!p10@CEBPB!0.13!1.14!CEBPB;;chr6:21594845..21594908,+!p6@SOX4!0.13!1.14!SOX4;;chr9:94186085..94186096,-!p3@NFIL3!0.13!1.14!NFIL3;;chr15:57211660..57211687,+!p6@TCF12!0.13!1.14!TCF12;;chr17:17723746..17723766,-!p5@SREBF1!0.13!1.14!SREBF1;;chr6:28234822..28234836,+!p1@ZNF187!0.13!0.95!ZNF187;;chr6:43139248..43139261,+!p4@SRF!0.13!0.95!SRF;;chr7:137686552..137686564,-!p9@CREB3L2!0.13!0.95!CREB3L2;;chr8:67525443..67525459,-!p2@MYBL1!0.13!0.95!MYBL1;;chr2:166326200..166326216,+!p1@CSRNP3!0.13!0.95!CSRNP3;;chr4:87928105..87928126,+!p13@AFF1!0.13!0.95!AFF1;;chr2:66662232..66662243,+!p5@MEIS1!0.13!0.76!MEIS1;;chr3:71632811..71632825,-!p19@FOXP1!0.13!0.76!FOXP1;;chr9:88969287..88969297,-!p3@ZCCHC6!0.13!0.76!ZCCHC6;;chr5:72743793..72743855,-!p4@FOXD1!0.13!0.57!FOXD1;;chr7:106826626..106826630,+!p3@HBP1!0.13!0.57!HBP1;;chr7:28725715..28725727,+!p3@CREB5!0.13!0.57!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.13!0.57!KLF4;;chr19:36545320..36545335,-!p5@THAP8!0.13!0.57!THAP8;;chr1:935519..935532,-!p4@HES4!0.13!0.57!HES4;;chr11:65686776..65686787,+!p9@DRAP1!0.13!0.57!DRAP1;;chr14:33408072..33408114,+!p2@NPAS3!0.13!0.57!NPAS3;;chr2:28615716..28615733,+!p1@FOSL2!0.12!56.81!FOSL2;;chr1:6845497..6845561,+!p1@CAMTA1!0.12!43.08!CAMTA1;;chr17:40719102..40719141,+!p1@MLX!0.12!37.55!MLX;;chr3:107241792..107241845,+!p1@BBX!0.12!26.50!BBX;;chr17:47492236..47492251,-!p1@PHB!0.12!16.20!PHB;;chr19:56092195..56092248,-!p1@ZNF579!0.12!12.01!ZNF579;;chr1:246729483..246729538,-!p2@TFB2M!0.12!10.68!TFB2M;;chr17:40540484..40540537,-!p2@STAT3!0.12!10.68!STAT3;;chr12:57916466..57916523,+!p2@MBD6!0.12!9.91!MBD6;;chr4:87856191..87856208,+!p2@AFF1!0.12!8.77!AFF1;;chr4:87928353..87928401,+!p4@AFF1!0.12!4.58!AFF1;;chr12:27485823..27485868,+!p2@ARNTL2!0.12!4.00!ARNTL2;;chr20:3388541..3388575,-!p2@C20orf194!0.12!3.81!C20orf194;;chr20:46130602..46130613,+!p3@NCOA3!0.12!2.67!NCOA3;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.12!2.48!ZFP112;;chr6:44233297..44233330,-!p2@NFKBIE!0.12!2.29!NFKBIE;;chr1:33721900..33721921,+!p2@ZNF362!0.12!2.10!ZNF362;;chr1:8763296..8763339,-!p9@RERE!0.12!2.10!RERE;;chr9:14083467..14083483,-!p4@NFIB!0.12!2.10!NFIB;;chr22:46546406..46546440,+!p1@PPARA!0.12!2.10!PPARA;;
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AD2;;chr3:141747459..141747475,-!p1@TFDP2!0.13!9.53!TFDP2;;chr9:94186131..94186174,-!p2@NFIL3!0.13!9.34!NFIL3;;chr12:133657477..133657529,+!p1@ZNF140!0.13!8.77!ZNF140;;chr5:139487363..139487444,+!p1@PURA!0.13!8.58!PURA;;chr17:17726907..17726958,-!p2@SREBF1!0.13!6.86!SREBF1;;chr2:145274900..145274934,-!p4@ZEB2!0.13!6.67!ZEB2;;chr2:178257401..178257432,-!p4@NFE2L2!0.13!6.10!NFE2L2;;chr19:38146320..38146401,-!p1@ZFP30!0.13!5.91!ZFP30;;chr2:28616358..28616380,+!p3@FOSL2!0.13!5.53!FOSL2;;chr9:35732561..35732587,+!p3@CREB3!0.13!4.38!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.13!4.19!TCF3;;chr19:12146483..12146546,-!p1@ZNF433!0.13!3.62!ZNF433;;chr19:37096194..37096235,+!p1@ZNF382!0.13!3.05!ZNF382;;chr19:36134528..36134563,+!p1@ETV2!0.13!2.67!ETV2;;chr19:46271505..46271575,-!p2@SIX5!0.13!2.29!SIX5;;chr22:50247528..50247568,+!p2@ZBED4!0.13!2.10!ZBED4;;chr16:3285049..3285081,-!p3@ZNF200!0.13!1.91!ZNF200;;chr11:62369383..62369399,-!p6@MTA2!0.13!1.91!MTA2;;chr12:48298765..48298783,-!p2@VDR!0.13!1.72!VDR;;chr19:13134457..13134462,+!p5@NFIX!0.13!1.33!NFIX;;chr1:114302066..114302080,-!p2@PHTF1!0.13!1.33!PHTF1;;chr20:48807779..48807802,+!p10@CEBPB!0.13!1.14!CEBPB;;chr6:21594845..21594908,+!p6@SOX4!0.13!1.14!SOX4;;chr9:94186085..94186096,-!p3@NFIL3!0.13!1.14!NFIL3;;chr15:57211660..57211687,+!p6@TCF12!0.13!1.14!TCF12;;chr17:17723746..17723766,-!p5@SREBF1!0.13!1.14!SREBF1;;chr6:28234822..28234836,+!p1@ZNF187!0.13!0.95!ZNF187;;chr6:43139248..43139261,+!p4@SRF!0.13!0.95!SRF;;chr7:137686552..137686564,-!p9@CREB3L2!0.13!0.95!CREB3L2;;chr8:67525443..67525459,-!p2@MYBL1!0.13!0.95!MYBL1;;chr2:166326200..166326216,+!p1@CSRNP3!0.13!0.95!CSRNP3;;chr4:87928105..87928126,+!p13@AFF1!0.13!0.95!AFF1;;chr2:66662232..66662243,+!p5@MEIS1!0.13!0.76!MEIS1;;chr3:71632811..71632825,-!p19@FOXP1!0.13!0.76!FOXP1;;chr9:88969287..88969297,-!p3@ZCCHC6!0.13!0.76!ZCCHC6;;chr5:72743793..72743855,-!p4@FOXD1!0.13!0.57!FOXD1;;chr7:106826626..106826630,+!p3@HBP1!0.13!0.57!HBP1;;chr7:28725715..28725727,+!p3@CREB5!0.13!0.57!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.13!0.57!KLF4;;chr19:36545320..36545335,-!p5@THAP8!0.13!0.57!THAP8;;chr1:935519..935532,-!p4@HES4!0.13!0.57!HES4;;chr11:65686776..65686787,+!p9@DRAP1!0.13!0.57!DRAP1;;chr14:33408072..33408114,+!p2@NPAS3!0.13!0.57!NPAS3;;chr2:28615716..28615733,+!p1@FOSL2!0.12!56.81!FOSL2;;chr1:6845497..6845561,+!p1@CAMTA1!0.12!43.08!CAMTA1;;chr17:40719102..40719141,+!p1@MLX!0.12!37.55!MLX;;chr3:107241792..107241845,+!p1@BBX!0.12!26.50!BBX;;chr17:47492236..47492251,-!p1@PHB!0.12!16.20!PHB;;chr19:56092195..56092248,-!p1@ZNF579!0.12!12.01!ZNF579;;chr1:246729483..246729538,-!p2@TFB2M!0.12!10.68!TFB2M;;chr17:40540484..40540537,-!p2@STAT3!0.12!10.68!STAT3;;chr12:57916466..57916523,+!p2@MBD6!0.12!9.91!MBD6;;chr4:87856191..87856208,+!p2@AFF1!0.12!8.77!AFF1;;chr4:87928353..87928401,+!p4@AFF1!0.12!4.58!AFF1;;chr12:27485823..27485868,+!p2@ARNTL2!0.12!4.00!ARNTL2;;chr20:3388541..3388575,-!p2@C20orf194!0.12!3.81!C20orf194;;chr20:46130602..46130613,+!p3@NCOA3!0.12!2.67!NCOA3;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.12!2.48!ZFP112;;chr6:44233297..44233330,-!p2@NFKBIE!0.12!2.29!NFKBIE;;chr1:33721900..33721921,+!p2@ZNF362!0.12!2.10!ZNF362;;chr1:8763296..8763339,-!p9@RERE!0.12!2.10!RERE;;chr9:14083467..14083483,-!p4@NFIB!0.12!2.10!NFIB;;chr22:46546406..46546440,+!p1@PPARA!0.12!2.10!PPARA;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002590;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.ctss.bed.gz
|id=FF:11391-118C5
|id=FF:11391-118C5
|is_a=EFO:0002091;;FF:0000002;;FF:0000170;;FF:0000210
|is_a=EFO:0002091;;FF:0000170
|is_obsolete=
|library_id=CNhs12004
|library_id_phase_based=2:CNhs12004
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11391
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TAGCTT.11391
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11391
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TAGCTT.11391
|name=Smooth Muscle Cells - Brain Vascular, donor3
|name=Smooth Muscle Cells - Brain Vascular, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12004,LSID837,release011,COMPLETED
|profile_hcage=CNhs12004,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=SRhi10003,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=118
|rna_box=118
|rna_catalog_number=SC1105
|rna_catalog_number=SC1105
Line 56: Line 82:
|rna_tube_id=118C5
|rna_tube_id=118C5
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.TAGCTT
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=unknown
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0005737;cytoplasm;4.58373120347347e-211!GO:0044424;intracellular part;3.52142723327878e-209!GO:0043226;organelle;1.66449561476259e-158!GO:0043229;intracellular organelle;3.24041499256861e-158!GO:0044444;cytoplasmic part;4.47433136146551e-158!GO:0043231;intracellular membrane-bound organelle;1.15078792254946e-157!GO:0043227;membrane-bound organelle;2.30848176727485e-157!GO:0044422;organelle part;2.78846152669856e-123!GO:0044446;intracellular organelle part;7.53424588886479e-122!GO:0032991;macromolecular complex;3.56823568688319e-78!GO:0044238;primary metabolic process;3.04330244435223e-76!GO:0044237;cellular metabolic process;1.95260812727506e-75!GO:0030529;ribonucleoprotein complex;7.10086920936054e-73!GO:0005515;protein binding;6.7723770161363e-70!GO:0005739;mitochondrion;3.7743623670153e-69!GO:0043170;macromolecule metabolic process;4.75234763333359e-63!GO:0031090;organelle membrane;1.08521548024444e-61!GO:0043233;organelle lumen;6.13641678036339e-60!GO:0031974;membrane-enclosed lumen;6.13641678036339e-60!GO:0019538;protein metabolic process;1.50934329067362e-57!GO:0003723;RNA binding;1.66006450538639e-55!GO:0044260;cellular macromolecule metabolic process;4.97197184802253e-52!GO:0044267;cellular protein metabolic process;7.44988671050803e-51!GO:0044428;nuclear part;1.39935621555539e-50!GO:0009058;biosynthetic process;2.558666944605e-49!GO:0005840;ribosome;2.66797274042897e-49!GO:0033036;macromolecule localization;9.25498513762373e-48!GO:0015031;protein transport;1.27074172681619e-47!GO:0006412;translation;3.46504868824981e-46!GO:0044429;mitochondrial part;4.72750166959249e-46!GO:0045184;establishment of protein localization;6.84526165704663e-45!GO:0008104;protein localization;1.11173633189953e-44!GO:0003735;structural constituent of ribosome;9.25090717700245e-44!GO:0016043;cellular component organization and biogenesis;2.82945085974314e-43!GO:0031967;organelle envelope;9.03506540649922e-42!GO:0031975;envelope;2.34779444471398e-41!GO:0044249;cellular biosynthetic process;5.22824361911352e-41!GO:0009059;macromolecule biosynthetic process;8.75201038114015e-41!GO:0005829;cytosol;1.96919902894021e-40!GO:0005634;nucleus;5.22047214361232e-40!GO:0043234;protein complex;1.06131129010575e-38!GO:0033279;ribosomal subunit;5.46778818092923e-38!GO:0046907;intracellular transport;2.91533195283512e-37!GO:0006396;RNA processing;4.22956704010737e-33!GO:0005740;mitochondrial envelope;2.54102525079322e-31!GO:0031981;nuclear lumen;6.51755254555602e-31!GO:0006886;intracellular protein transport;1.03561854313961e-30!GO:0031966;mitochondrial membrane;1.08926188583789e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.20882088804945e-29!GO:0019866;organelle inner membrane;3.93803369974402e-28!GO:0016071;mRNA metabolic process;5.44988105991537e-28!GO:0012505;endomembrane system;1.53446958463546e-27!GO:0043283;biopolymer metabolic process;3.19990869231375e-27!GO:0005783;endoplasmic reticulum;5.76159664456996e-27!GO:0005743;mitochondrial inner membrane;1.09629311898223e-26!GO:0065003;macromolecular complex assembly;5.67806392485987e-26!GO:0008380;RNA splicing;2.20090855234069e-25!GO:0051649;establishment of cellular localization;2.90768561699289e-24!GO:0044445;cytosolic part;5.26549872314936e-24!GO:0051641;cellular localization;5.73481861424882e-24!GO:0006119;oxidative phosphorylation;1.1499512996881e-23!GO:0006397;mRNA processing;4.0882107204045e-23!GO:0005794;Golgi apparatus;5.95436628276411e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.47398927801145e-23!GO:0006996;organelle organization and biogenesis;6.92414432207439e-23!GO:0022607;cellular component assembly;8.19198960438435e-23!GO:0010467;gene expression;1.6718219580104e-22!GO:0048770;pigment granule;5.72325684926503e-21!GO:0042470;melanosome;5.72325684926503e-21!GO:0044432;endoplasmic reticulum part;1.59222075821055e-20!GO:0000166;nucleotide binding;2.79488207712245e-20!GO:0044455;mitochondrial membrane part;3.06456331830499e-20!GO:0006457;protein folding;4.1608201127031e-20!GO:0043228;non-membrane-bound organelle;4.31751636295175e-20!GO:0043232;intracellular non-membrane-bound organelle;4.31751636295175e-20!GO:0015934;large ribosomal subunit;9.41311305634576e-20!GO:0015935;small ribosomal subunit;2.77892730313499e-19!GO:0005654;nucleoplasm;3.5770219891932e-19!GO:0016462;pyrophosphatase activity;1.2926418107455e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42003405422215e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.19468528850945e-18!GO:0031980;mitochondrial lumen;2.6665077085344e-18!GO:0005759;mitochondrial matrix;2.6665077085344e-18!GO:0017111;nucleoside-triphosphatase activity;7.41261530689443e-18!GO:0005746;mitochondrial respiratory chain;1.11398488373047e-17!GO:0051186;cofactor metabolic process;1.53099202920845e-17!GO:0005681;spliceosome;1.670136938355e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.98420714232791e-17!GO:0016874;ligase activity;7.22874946683944e-17!GO:0048193;Golgi vesicle transport;9.63512438523691e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.03022660507101e-16!GO:0016192;vesicle-mediated transport;1.45149277092281e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.98335085911538e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.40025517756099e-16!GO:0019941;modification-dependent protein catabolic process;6.29673450188707e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.29673450188707e-16!GO:0044265;cellular macromolecule catabolic process;6.75295969858563e-16!GO:0022618;protein-RNA complex assembly;6.75295969858563e-16!GO:0006512;ubiquitin cycle;7.57320574780683e-16!GO:0044257;cellular protein catabolic process;7.79793763484439e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.31571126351336e-16!GO:0003954;NADH dehydrogenase activity;9.31571126351336e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.31571126351336e-16!GO:0044451;nucleoplasm part;1.01732112128144e-15!GO:0044248;cellular catabolic process;1.13402039105298e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.17305406831744e-15!GO:0043285;biopolymer catabolic process;2.31541005649863e-15!GO:0043412;biopolymer modification;2.33926543712462e-15!GO:0032553;ribonucleotide binding;2.6707491778932e-15!GO:0032555;purine ribonucleotide binding;2.6707491778932e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.6707491778932e-15!GO:0017076;purine nucleotide binding;4.15945254587473e-15!GO:0006605;protein targeting;8.16280572612436e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.56406534667768e-15!GO:0030163;protein catabolic process;1.59663680067184e-14!GO:0006464;protein modification process;2.0571746964265e-14!GO:0051082;unfolded protein binding;2.35184623904087e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.75955379320849e-14!GO:0009057;macromolecule catabolic process;2.80232045620741e-14!GO:0005789;endoplasmic reticulum membrane;2.81802649314954e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.69415463751353e-14!GO:0042773;ATP synthesis coupled electron transport;5.69415463751353e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.66791259722223e-14!GO:0045271;respiratory chain complex I;6.66791259722223e-14!GO:0005747;mitochondrial respiratory chain complex I;6.66791259722223e-14!GO:0008135;translation factor activity, nucleic acid binding;7.11957918617296e-14!GO:0006732;coenzyme metabolic process;7.5421183203317e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.02177492752244e-14!GO:0008134;transcription factor binding;1.18711708533191e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.05423908257202e-13!GO:0005761;mitochondrial ribosome;4.68490811079143e-13!GO:0000313;organellar ribosome;4.68490811079143e-13!GO:0005730;nucleolus;9.98499115226796e-13!GO:0005793;ER-Golgi intermediate compartment;2.95152799644609e-12!GO:0006259;DNA metabolic process;3.01238682967099e-12!GO:0007049;cell cycle;3.09881546018689e-12!GO:0012501;programmed cell death;3.36826049975005e-12!GO:0006915;apoptosis;1.02665554441464e-11!GO:0009055;electron carrier activity;1.44544112407772e-11!GO:0043687;post-translational protein modification;2.09930877096367e-11!GO:0005524;ATP binding;2.22598629147533e-11!GO:0032559;adenyl ribonucleotide binding;2.44348793249423e-11!GO:0005635;nuclear envelope;3.19512363482253e-11!GO:0003743;translation initiation factor activity;3.92173141034828e-11!GO:0030554;adenyl nucleotide binding;4.763728785028e-11!GO:0031965;nuclear membrane;9.54711260514951e-11!GO:0008219;cell death;1.22207073067899e-10!GO:0016265;death;1.22207073067899e-10!GO:0009259;ribonucleotide metabolic process;1.27862747414137e-10!GO:0005768;endosome;1.27862747414137e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.94722899453379e-10!GO:0006413;translational initiation;1.97884965638414e-10!GO:0044431;Golgi apparatus part;2.37473559901892e-10!GO:0006163;purine nucleotide metabolic process;4.61029886141927e-10!GO:0009150;purine ribonucleotide metabolic process;5.34844849630075e-10!GO:0008565;protein transporter activity;5.96704680768142e-10!GO:0009056;catabolic process;7.79858280659385e-10!GO:0008639;small protein conjugating enzyme activity;7.85521230953618e-10!GO:0006913;nucleocytoplasmic transport;9.56095883405195e-10!GO:0019787;small conjugating protein ligase activity;9.7615339863583e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.15138068391267e-09!GO:0000375;RNA splicing, via transesterification reactions;1.15138068391267e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.15138068391267e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17541914089407e-09!GO:0006461;protein complex assembly;1.53758682965939e-09!GO:0004842;ubiquitin-protein ligase activity;1.55537551730014e-09!GO:0003924;GTPase activity;1.61108146533651e-09!GO:0051169;nuclear transport;1.99559090062521e-09!GO:0009260;ribonucleotide biosynthetic process;2.02881301115004e-09!GO:0006164;purine nucleotide biosynthetic process;2.16671330289217e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.41039975825203e-09!GO:0016491;oxidoreductase activity;2.4430640068531e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.50045373572711e-09!GO:0006446;regulation of translational initiation;2.80801231211319e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.08863186570543e-09!GO:0009141;nucleoside triphosphate metabolic process;3.62993788283228e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.74252369209351e-09!GO:0051188;cofactor biosynthetic process;4.00637511749904e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.17934741868698e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.17934741868698e-09!GO:0044453;nuclear membrane part;4.58145639777806e-09!GO:0015986;ATP synthesis coupled proton transport;5.02984754179192e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.02984754179192e-09!GO:0009060;aerobic respiration;5.30760430117638e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.18977589454405e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.18977589454405e-09!GO:0005788;endoplasmic reticulum lumen;8.01214856734265e-09!GO:0003712;transcription cofactor activity;8.01214856734265e-09!GO:0048523;negative regulation of cellular process;8.06381281970312e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.05305901685197e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.05305901685197e-08!GO:0016604;nuclear body;1.09249021716004e-08!GO:0016740;transferase activity;1.09480640093824e-08!GO:0022402;cell cycle process;1.19449693373881e-08!GO:0030120;vesicle coat;1.21429595440952e-08!GO:0030662;coated vesicle membrane;1.21429595440952e-08!GO:0016881;acid-amino acid ligase activity;1.24292074202739e-08!GO:0045333;cellular respiration;1.33038726031661e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.46799143139421e-08!GO:0031988;membrane-bound vesicle;1.56346016377618e-08!GO:0019829;cation-transporting ATPase activity;1.8975840505158e-08!GO:0003676;nucleic acid binding;1.98873547477608e-08!GO:0051246;regulation of protein metabolic process;2.07224668862412e-08!GO:0017038;protein import;2.47491892630001e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.54759699597259e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.71658073396637e-08!GO:0042254;ribosome biogenesis and assembly;2.89049047428734e-08!GO:0048475;coated membrane;3.06214518893521e-08!GO:0030117;membrane coat;3.06214518893521e-08!GO:0000139;Golgi membrane;4.84379321150833e-08!GO:0046034;ATP metabolic process;4.92925277838369e-08!GO:0042623;ATPase activity, coupled;5.23188014079459e-08!GO:0043067;regulation of programmed cell death;5.44572214001011e-08!GO:0042981;regulation of apoptosis;7.17553364918991e-08!GO:0006974;response to DNA damage stimulus;7.36436956912471e-08!GO:0016887;ATPase activity;7.81281804751622e-08!GO:0031982;vesicle;8.80018976435416e-08!GO:0006793;phosphorus metabolic process;8.97914921068107e-08!GO:0006796;phosphate metabolic process;8.97914921068107e-08!GO:0031410;cytoplasmic vesicle;9.61144144967609e-08!GO:0006754;ATP biosynthetic process;1.04089405187835e-07!GO:0006753;nucleoside phosphate metabolic process;1.04089405187835e-07!GO:0006399;tRNA metabolic process;1.7921772752686e-07!GO:0016310;phosphorylation;1.89016920604089e-07!GO:0008654;phospholipid biosynthetic process;2.2642279663101e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.4240454397334e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.66619029226743e-07!GO:0065002;intracellular protein transport across a membrane;2.77789070262937e-07!GO:0051726;regulation of cell cycle;3.25512324234649e-07!GO:0000278;mitotic cell cycle;3.34541970289948e-07!GO:0006099;tricarboxylic acid cycle;3.34541970289948e-07!GO:0046356;acetyl-CoA catabolic process;3.34541970289948e-07!GO:0009108;coenzyme biosynthetic process;3.34541970289948e-07!GO:0000074;regulation of progression through cell cycle;3.54934093710571e-07!GO:0051187;cofactor catabolic process;4.16796539211793e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.16796539211793e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.16796539211793e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.16796539211793e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.25539016862541e-07!GO:0048519;negative regulation of biological process;4.50895455953856e-07!GO:0006091;generation of precursor metabolites and energy;4.66474218603241e-07!GO:0009117;nucleotide metabolic process;4.66824178634235e-07!GO:0005773;vacuole;5.11084878622214e-07!GO:0007005;mitochondrion organization and biogenesis;5.33734286297703e-07!GO:0005643;nuclear pore;6.00057483874608e-07!GO:0004386;helicase activity;6.19513263633958e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.34875848120444e-07!GO:0043038;amino acid activation;6.45303410130432e-07!GO:0006418;tRNA aminoacylation for protein translation;6.45303410130432e-07!GO:0043039;tRNA aminoacylation;6.45303410130432e-07!GO:0005770;late endosome;6.96321001767798e-07!GO:0043069;negative regulation of programmed cell death;6.97745172210507e-07!GO:0016607;nuclear speck;7.07670688239725e-07!GO:0005798;Golgi-associated vesicle;7.61715722889495e-07!GO:0016787;hydrolase activity;7.81985382334429e-07!GO:0009109;coenzyme catabolic process;9.81765709036356e-07!GO:0044440;endosomal part;9.83083005936922e-07!GO:0010008;endosome membrane;9.83083005936922e-07!GO:0005525;GTP binding;1.11957618510248e-06!GO:0043066;negative regulation of apoptosis;1.23543647984025e-06!GO:0006752;group transfer coenzyme metabolic process;1.24096311920489e-06!GO:0006084;acetyl-CoA metabolic process;1.24475628516807e-06!GO:0008026;ATP-dependent helicase activity;1.36687763884745e-06!GO:0016853;isomerase activity;1.56088220194614e-06!GO:0045259;proton-transporting ATP synthase complex;1.95578147190599e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.24622540915233e-06!GO:0031252;leading edge;2.58309047355215e-06!GO:0046930;pore complex;2.62109374787856e-06!GO:0004298;threonine endopeptidase activity;2.87113015196074e-06!GO:0016070;RNA metabolic process;2.87640519834252e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.80207884990085e-06!GO:0008610;lipid biosynthetic process;4.28089234543356e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.32584097584451e-06!GO:0006916;anti-apoptosis;5.18729345332913e-06!GO:0032561;guanyl ribonucleotide binding;6.09898446729062e-06!GO:0019001;guanyl nucleotide binding;6.09898446729062e-06!GO:0051170;nuclear import;6.21215839053695e-06!GO:0009719;response to endogenous stimulus;7.46867590635276e-06!GO:0006403;RNA localization;7.75173950792009e-06!GO:0032446;protein modification by small protein conjugation;7.82817310312785e-06!GO:0015980;energy derivation by oxidation of organic compounds;7.84593914444994e-06!GO:0030133;transport vesicle;7.87543954706316e-06!GO:0050657;nucleic acid transport;8.59591595682027e-06!GO:0051236;establishment of RNA localization;8.59591595682027e-06!GO:0050658;RNA transport;8.59591595682027e-06!GO:0019899;enzyme binding;8.80607641847023e-06!GO:0003714;transcription corepressor activity;8.8205392955235e-06!GO:0016567;protein ubiquitination;9.95973232311993e-06!GO:0000323;lytic vacuole;1.0308967815885e-05!GO:0005764;lysosome;1.0308967815885e-05!GO:0045454;cell redox homeostasis;1.11091930766055e-05!GO:0045786;negative regulation of progression through cell cycle;1.1486881363716e-05!GO:0000151;ubiquitin ligase complex;1.22502029308698e-05!GO:0006606;protein import into nucleus;1.2486954935704e-05!GO:0006281;DNA repair;1.34615202479032e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.3556443717901e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.42933612250124e-05!GO:0051789;response to protein stimulus;1.51478526292192e-05!GO:0006986;response to unfolded protein;1.51478526292192e-05!GO:0005762;mitochondrial large ribosomal subunit;1.5169162872197e-05!GO:0000315;organellar large ribosomal subunit;1.5169162872197e-05!GO:0006613;cotranslational protein targeting to membrane;1.61022147499042e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.75179290062228e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.75955044221633e-05!GO:0043623;cellular protein complex assembly;1.78883883805468e-05!GO:0016859;cis-trans isomerase activity;1.80420745793115e-05!GO:0031968;organelle outer membrane;1.89501462808454e-05!GO:0006366;transcription from RNA polymerase II promoter;1.9087265219291e-05!GO:0007243;protein kinase cascade;2.12349406489266e-05!GO:0016126;sterol biosynthetic process;2.55547244851127e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.55547244851127e-05!GO:0019867;outer membrane;2.79584220641177e-05!GO:0050794;regulation of cellular process;2.84518290174102e-05!GO:0008361;regulation of cell size;2.98124006344725e-05!GO:0005769;early endosome;3.18865029277749e-05!GO:0006364;rRNA processing;3.75779851701479e-05!GO:0044262;cellular carbohydrate metabolic process;4.41895009708571e-05!GO:0030867;rough endoplasmic reticulum membrane;4.72155316112153e-05!GO:0005791;rough endoplasmic reticulum;5.19717089788968e-05!GO:0016049;cell growth;5.19717089788968e-05!GO:0019843;rRNA binding;5.71313686278681e-05!GO:0046467;membrane lipid biosynthetic process;6.60266106489385e-05!GO:0000245;spliceosome assembly;6.70624863060546e-05!GO:0006323;DNA packaging;7.15180420035836e-05!GO:0016072;rRNA metabolic process;7.75579284993906e-05!GO:0007264;small GTPase mediated signal transduction;8.69095777164498e-05!GO:0005741;mitochondrial outer membrane;8.9910491368791e-05!GO:0051276;chromosome organization and biogenesis;9.82799190955543e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000104094908101264!GO:0005905;coated pit;0.000116594278154634!GO:0033116;ER-Golgi intermediate compartment membrane;0.000118824254906007!GO:0006612;protein targeting to membrane;0.000128032088328822!GO:0001558;regulation of cell growth;0.00013056270669775!GO:0030029;actin filament-based process;0.000143666393607727!GO:0005048;signal sequence binding;0.000144585196782001!GO:0016779;nucleotidyltransferase activity;0.000148117230165612!GO:0051028;mRNA transport;0.000163844965453702!GO:0030659;cytoplasmic vesicle membrane;0.000163850473720998!GO:0022403;cell cycle phase;0.000175825529932492!GO:0015630;microtubule cytoskeleton;0.00018393507062772!GO:0016564;transcription repressor activity;0.000187835451573228!GO:0003724;RNA helicase activity;0.000198619271822141!GO:0046474;glycerophospholipid biosynthetic process;0.000198798270797058!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000221975739353!GO:0051329;interphase of mitotic cell cycle;0.00022425297279743!GO:0043566;structure-specific DNA binding;0.000228281096459065!GO:0051427;hormone receptor binding;0.00023507762975059!GO:0005667;transcription factor complex;0.000241702151866125!GO:0003697;single-stranded DNA binding;0.000242812134715356!GO:0005885;Arp2/3 protein complex;0.000256655406365984!GO:0048522;positive regulation of cellular process;0.000256692749207187!GO:0003713;transcription coactivator activity;0.000256692749207187!GO:0051301;cell division;0.000264557490500205!GO:0007010;cytoskeleton organization and biogenesis;0.000266247920395866!GO:0030663;COPI coated vesicle membrane;0.000296551956440154!GO:0030126;COPI vesicle coat;0.000296551956440154!GO:0065004;protein-DNA complex assembly;0.000315365104079963!GO:0004576;oligosaccharyl transferase activity;0.000328017645288205!GO:0006695;cholesterol biosynthetic process;0.000333164646263995!GO:0006082;organic acid metabolic process;0.000341490038536674!GO:0008250;oligosaccharyl transferase complex;0.000355895696828746!GO:0019752;carboxylic acid metabolic process;0.000360010797075507!GO:0009165;nucleotide biosynthetic process;0.000361913510560469!GO:0051325;interphase;0.000369320653287449!GO:0016568;chromatin modification;0.000373038499605646!GO:0016044;membrane organization and biogenesis;0.000376975746971839!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000386327049666168!GO:0008092;cytoskeletal protein binding;0.000394947990172872!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000427593756059608!GO:0043021;ribonucleoprotein binding;0.000428856932680953!GO:0035257;nuclear hormone receptor binding;0.000453896740546432!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000467595616809629!GO:0030176;integral to endoplasmic reticulum membrane;0.000491646390121907!GO:0044433;cytoplasmic vesicle part;0.000520290441609238!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000541938370887503!GO:0005813;centrosome;0.000551360754991407!GO:0030137;COPI-coated vesicle;0.000555697856799983!GO:0018196;peptidyl-asparagine modification;0.000601770259025549!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000601770259025549!GO:0006260;DNA replication;0.000614174519275914!GO:0031324;negative regulation of cellular metabolic process;0.000628319631480289!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000696162079158058!GO:0000087;M phase of mitotic cell cycle;0.000735777474444031!GO:0050789;regulation of biological process;0.00076052915620821!GO:0007067;mitosis;0.000770943652575563!GO:0044255;cellular lipid metabolic process;0.000787603693167726!GO:0006891;intra-Golgi vesicle-mediated transport;0.000792404321152069!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000839283496219845!GO:0043681;protein import into mitochondrion;0.000846507403722433!GO:0051920;peroxiredoxin activity;0.000847796050984855!GO:0016197;endosome transport;0.000938886948970116!GO:0000314;organellar small ribosomal subunit;0.000962408124555684!GO:0005763;mitochondrial small ribosomal subunit;0.000962408124555684!GO:0030658;transport vesicle membrane;0.00113574179581843!GO:0008047;enzyme activator activity;0.00120644489525809!GO:0004177;aminopeptidase activity;0.00122001113436559!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00122066741297444!GO:0015399;primary active transmembrane transporter activity;0.00122066741297444!GO:0012506;vesicle membrane;0.00125385426387375!GO:0051168;nuclear export;0.00129785712887634!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00134165558021243!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00134165558021243!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00134165558021243!GO:0031072;heat shock protein binding;0.00142615852195727!GO:0015992;proton transport;0.00150063373890155!GO:0045045;secretory pathway;0.00150698821383039!GO:0006818;hydrogen transport;0.00150994945104801!GO:0046489;phosphoinositide biosynthetic process;0.00150994945104801!GO:0006626;protein targeting to mitochondrion;0.00153167155109663!GO:0005815;microtubule organizing center;0.00157812646068887!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00158190199087718!GO:0016563;transcription activator activity;0.00164887084267795!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00169152852507371!GO:0007050;cell cycle arrest;0.00174089757748513!GO:0022890;inorganic cation transmembrane transporter activity;0.00178106413952818!GO:0003729;mRNA binding;0.00190858276150101!GO:0006979;response to oxidative stress;0.00190858276150101!GO:0006643;membrane lipid metabolic process;0.00199182118340442!GO:0030132;clathrin coat of coated pit;0.00200170056783137!GO:0031902;late endosome membrane;0.00207649250399592!GO:0000059;protein import into nucleus, docking;0.00207898996036228!GO:0035258;steroid hormone receptor binding;0.00212612696820259!GO:0003899;DNA-directed RNA polymerase activity;0.00213661545493105!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00219265504406778!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00226433672594791!GO:0015002;heme-copper terminal oxidase activity;0.00226433672594791!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00226433672594791!GO:0004129;cytochrome-c oxidase activity;0.00226433672594791!GO:0046483;heterocycle metabolic process;0.00229905021076043!GO:0006650;glycerophospholipid metabolic process;0.0023201157476321!GO:0030027;lamellipodium;0.00235517607933618!GO:0001726;ruffle;0.00237166836736595!GO:0030134;ER to Golgi transport vesicle;0.0024121644480679!GO:0006333;chromatin assembly or disassembly;0.00242905334225139!GO:0030118;clathrin coat;0.00246630741193471!GO:0030880;RNA polymerase complex;0.0025048836432345!GO:0006839;mitochondrial transport;0.00250660825311329!GO:0065009;regulation of a molecular function;0.00250660825311329!GO:0043284;biopolymer biosynthetic process;0.00252018509073761!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00253762629946295!GO:0009892;negative regulation of metabolic process;0.00254331421816773!GO:0006892;post-Golgi vesicle-mediated transport;0.00261039941847661!GO:0005694;chromosome;0.00261431313217269!GO:0009967;positive regulation of signal transduction;0.00261431313217269!GO:0048471;perinuclear region of cytoplasm;0.00285836610404815!GO:0008186;RNA-dependent ATPase activity;0.00286336278395524!GO:0006383;transcription from RNA polymerase III promoter;0.00292981345508388!GO:0051252;regulation of RNA metabolic process;0.0029756566221241!GO:0006414;translational elongation;0.0029756566221241!GO:0005774;vacuolar membrane;0.0029756566221241!GO:0007040;lysosome organization and biogenesis;0.00310724573314417!GO:0048500;signal recognition particle;0.00324106648823585!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00324715682977192!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00324715682977192!GO:0004674;protein serine/threonine kinase activity;0.00342347764272492!GO:0016125;sterol metabolic process;0.00350251724191576!GO:0048487;beta-tubulin binding;0.00351434339516184!GO:0030660;Golgi-associated vesicle membrane;0.00354833895463786!GO:0030127;COPII vesicle coat;0.00369398571384842!GO:0012507;ER to Golgi transport vesicle membrane;0.00369398571384842!GO:0007033;vacuole organization and biogenesis;0.00384874462699054!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00449381870319195!GO:0042802;identical protein binding;0.00454902273375192!GO:0007006;mitochondrial membrane organization and biogenesis;0.00463917664926671!GO:0040008;regulation of growth;0.00464332395490572!GO:0051128;regulation of cellular component organization and biogenesis;0.00507230394556879!GO:0043488;regulation of mRNA stability;0.00509414112156218!GO:0043487;regulation of RNA stability;0.00509414112156218!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00509909660272978!GO:0000428;DNA-directed RNA polymerase complex;0.00509909660272978!GO:0000785;chromatin;0.00522081541276563!GO:0030145;manganese ion binding;0.00525180172462162!GO:0006520;amino acid metabolic process;0.00548241726022669!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00550507177348378!GO:0006672;ceramide metabolic process;0.00554637914896173!GO:0044427;chromosomal part;0.00564255158635331!GO:0008139;nuclear localization sequence binding;0.00569044450371516!GO:0051287;NAD binding;0.00572780482356176!GO:0006807;nitrogen compound metabolic process;0.00576712262843154!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00607869705733677!GO:0043492;ATPase activity, coupled to movement of substances;0.00608854768062715!GO:0006629;lipid metabolic process;0.00610266271592718!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00662359730388132!GO:0045047;protein targeting to ER;0.00662359730388132!GO:0005096;GTPase activator activity;0.00669054946627019!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00669054946627019!GO:0046519;sphingoid metabolic process;0.00686448259135769!GO:0004004;ATP-dependent RNA helicase activity;0.006918220893033!GO:0006595;polyamine metabolic process;0.00704529359484316!GO:0031301;integral to organelle membrane;0.00711084027015541!GO:0008632;apoptotic program;0.00721101518959408!GO:0006118;electron transport;0.00745312271720572!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00766299648856102!GO:0006778;porphyrin metabolic process;0.00773271321197465!GO:0033013;tetrapyrrole metabolic process;0.00773271321197465!GO:0017166;vinculin binding;0.00790343299728464!GO:0048468;cell development;0.00791050915636975!GO:0044437;vacuolar part;0.00796944760147739!GO:0015631;tubulin binding;0.00807082541210312!GO:0048518;positive regulation of biological process;0.00820614522893473!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00824878459511527!GO:0006402;mRNA catabolic process;0.00825869765070834!GO:0006509;membrane protein ectodomain proteolysis;0.00846896395057264!GO:0033619;membrane protein proteolysis;0.00846896395057264!GO:0006790;sulfur metabolic process;0.00857613378479567!GO:0008286;insulin receptor signaling pathway;0.00859599467081803!GO:0000082;G1/S transition of mitotic cell cycle;0.00864675603954731!GO:0006644;phospholipid metabolic process;0.00876363831569147!GO:0030119;AP-type membrane coat adaptor complex;0.00878767986485301!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0088076530168599!GO:0032940;secretion by cell;0.0088076530168599!GO:0006066;alcohol metabolic process;0.00892060203953862!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00900752165963371!GO:0016860;intramolecular oxidoreductase activity;0.0090646200286398!GO:0008180;signalosome;0.00921411287833477!GO:0006740;NADPH regeneration;0.00923828023983111!GO:0006098;pentose-phosphate shunt;0.00923828023983111!GO:0005869;dynactin complex;0.0094328561292017!GO:0045792;negative regulation of cell size;0.00962254372262898!GO:0005100;Rho GTPase activator activity;0.00969144889941297!GO:0050662;coenzyme binding;0.00970758725782387!GO:0016363;nuclear matrix;0.00992135802984622!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0103302154466971!GO:0005765;lysosomal membrane;0.0108654168453473!GO:0043068;positive regulation of programmed cell death;0.0110024658048046!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0111197790727197!GO:0031543;peptidyl-proline dioxygenase activity;0.0111467293228444!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0111572857183259!GO:0007265;Ras protein signal transduction;0.0111717234630897!GO:0043065;positive regulation of apoptosis;0.0112783679457055!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0112783679457055!GO:0008312;7S RNA binding;0.0112944293981732!GO:0019798;procollagen-proline dioxygenase activity;0.0114377430382134!GO:0005099;Ras GTPase activator activity;0.0114696840248821!GO:0016408;C-acyltransferase activity;0.0116408291424769!GO:0007034;vacuolar transport;0.0116445015961128!GO:0005862;muscle thin filament tropomyosin;0.0119137416945491!GO:0009112;nucleobase metabolic process;0.0119137416945491!GO:0031901;early endosome membrane;0.012174069862012!GO:0030308;negative regulation of cell growth;0.012174069862012!GO:0009308;amine metabolic process;0.012174069862012!GO:0050811;GABA receptor binding;0.0122092571454222!GO:0030125;clathrin vesicle coat;0.0122226421405398!GO:0030665;clathrin coated vesicle membrane;0.0122226421405398!GO:0051101;regulation of DNA binding;0.0123545652347969!GO:0030384;phosphoinositide metabolic process;0.0123895167820756!GO:0031625;ubiquitin protein ligase binding;0.0126107156815741!GO:0031418;L-ascorbic acid binding;0.0127395855269371!GO:0016301;kinase activity;0.0128069892768419!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130640239575739!GO:0007030;Golgi organization and biogenesis;0.0131097330182959!GO:0006497;protein amino acid lipidation;0.0134693940720204!GO:0050681;androgen receptor binding;0.0137010680121678!GO:0030521;androgen receptor signaling pathway;0.0137264745054831!GO:0042158;lipoprotein biosynthetic process;0.0143681169239308!GO:0033559;unsaturated fatty acid metabolic process;0.0144317130064135!GO:0006636;unsaturated fatty acid biosynthetic process;0.0144317130064135!GO:0005684;U2-dependent spliceosome;0.0145353113952651!GO:0043022;ribosome binding;0.0145897146537732!GO:0033673;negative regulation of kinase activity;0.0149125973984407!GO:0006469;negative regulation of protein kinase activity;0.0149125973984407!GO:0016481;negative regulation of transcription;0.0149125973984407!GO:0030131;clathrin adaptor complex;0.0151010534143126!GO:0042168;heme metabolic process;0.0153816167873791!GO:0003690;double-stranded DNA binding;0.0155004236434602!GO:0005975;carbohydrate metabolic process;0.0156345712953363!GO:0051087;chaperone binding;0.0157795874007664!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0158737151358556!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0158737151358556!GO:0031529;ruffle organization and biogenesis;0.0171157025185688!GO:0050790;regulation of catalytic activity;0.0172658519812674!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0175456251825849!GO:0051540;metal cluster binding;0.0175592189584987!GO:0051536;iron-sulfur cluster binding;0.0175592189584987!GO:0006352;transcription initiation;0.0183462351204489!GO:0030518;steroid hormone receptor signaling pathway;0.0185109303950936!GO:0051348;negative regulation of transferase activity;0.018655105667003!GO:0003746;translation elongation factor activity;0.0191412888941853!GO:0000339;RNA cap binding;0.019255251862764!GO:0005832;chaperonin-containing T-complex;0.0194849206878204!GO:0035035;histone acetyltransferase binding;0.019499704495322!GO:0003711;transcription elongation regulator activity;0.019499704495322!GO:0006897;endocytosis;0.0195305864371203!GO:0010324;membrane invagination;0.0195305864371203!GO:0000279;M phase;0.0196971374061704!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0201886947344714!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0201893394641859!GO:0003779;actin binding;0.0201893394641859!GO:0016272;prefoldin complex;0.0202297983714819!GO:0005586;collagen type III;0.0203517621541049!GO:0030041;actin filament polymerization;0.0204826883360852!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0205353786326552!GO:0006506;GPI anchor biosynthetic process;0.0207804264790853!GO:0006779;porphyrin biosynthetic process;0.0214403392569434!GO:0033014;tetrapyrrole biosynthetic process;0.0214403392569434!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0215723429652837!GO:0005801;cis-Golgi network;0.0219222159470418!GO:0007242;intracellular signaling cascade;0.0230335782300696!GO:0022406;membrane docking;0.0233639845176915!GO:0048278;vesicle docking;0.0233639845176915!GO:0000049;tRNA binding;0.0233717783876606!GO:0005637;nuclear inner membrane;0.0235690058182873!GO:0008154;actin polymerization and/or depolymerization;0.0236773821395313!GO:0051098;regulation of binding;0.0237561914846689!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0247377909922541!GO:0006334;nucleosome assembly;0.0249102696083419!GO:0006611;protein export from nucleus;0.0253317090090129!GO:0005938;cell cortex;0.0254311172312808!GO:0006739;NADP metabolic process;0.0262274953294565!GO:0006505;GPI anchor metabolic process;0.0268282793067125!GO:0015036;disulfide oxidoreductase activity;0.026923740645519!GO:0030833;regulation of actin filament polymerization;0.026923740645519!GO:0006720;isoprenoid metabolic process;0.0272439168688728!GO:0006749;glutathione metabolic process;0.0273007067646453!GO:0008033;tRNA processing;0.0275324564804773!GO:0003756;protein disulfide isomerase activity;0.0275324564804773!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0275324564804773!GO:0006007;glucose catabolic process;0.0282901377782645!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0286584581149127!GO:0033043;regulation of organelle organization and biogenesis;0.0286584581149127!GO:0008484;sulfuric ester hydrolase activity;0.029234001611565!GO:0000209;protein polyubiquitination;0.0296054042593344!GO:0051336;regulation of hydrolase activity;0.0296928302940295!GO:0031970;organelle envelope lumen;0.0298429670719222!GO:0005083;small GTPase regulator activity;0.0299724525347185!GO:0003684;damaged DNA binding;0.0306980924454986!GO:0006401;RNA catabolic process;0.0310098299001769!GO:0006904;vesicle docking during exocytosis;0.031851947066815!GO:0006519;amino acid and derivative metabolic process;0.0322553502434524!GO:0007041;lysosomal transport;0.0329865458929432!GO:0008538;proteasome activator activity;0.0330858198067383!GO:0018193;peptidyl-amino acid modification;0.0331661909709672!GO:0016584;nucleosome positioning;0.0338326565089519!GO:0043087;regulation of GTPase activity;0.0338326565089519!GO:0031300;intrinsic to organelle membrane;0.0340996317222296!GO:0008203;cholesterol metabolic process;0.0343795007310639!GO:0000096;sulfur amino acid metabolic process;0.0344120973475816!GO:0006607;NLS-bearing substrate import into nucleus;0.0346090052233858!GO:0030032;lamellipodium biogenesis;0.0348369341238667!GO:0031371;ubiquitin conjugating enzyme complex;0.035220665986953!GO:0006950;response to stress;0.0354446254052216!GO:0030508;thiol-disulfide exchange intermediate activity;0.0364869365241085!GO:0005819;spindle;0.0365475921555187!GO:0030149;sphingolipid catabolic process;0.0365475921555187!GO:0006767;water-soluble vitamin metabolic process;0.0366298626446332!GO:0006769;nicotinamide metabolic process;0.0366373767710421!GO:0065007;biological regulation;0.0371496901133747!GO:0006417;regulation of translation;0.0375432305374876!GO:0030911;TPR domain binding;0.038241018548984!GO:0031497;chromatin assembly;0.0387775354971031!GO:0045936;negative regulation of phosphate metabolic process;0.0395952490890256!GO:0022408;negative regulation of cell-cell adhesion;0.0396261463724761!GO:0009116;nucleoside metabolic process;0.0404525322595494!GO:0008637;apoptotic mitochondrial changes;0.0404525322595494!GO:0006458;'de novo' protein folding;0.0405436827335544!GO:0051084;'de novo' posttranslational protein folding;0.0405436827335544!GO:0006144;purine base metabolic process;0.0406009714260639!GO:0006405;RNA export from nucleus;0.0408390730781684!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0418212255316328!GO:0004667;prostaglandin-D synthase activity;0.0418212255316328!GO:0050802;circadian sleep/wake cycle, sleep;0.0418212255316328!GO:0022410;circadian sleep/wake cycle process;0.0418212255316328!GO:0042749;regulation of circadian sleep/wake cycle;0.0418212255316328!GO:0005777;peroxisome;0.0419553704966658!GO:0042579;microbody;0.0419553704966658!GO:0006783;heme biosynthetic process;0.042542294988251!GO:0005092;GDP-dissociation inhibitor activity;0.0426419444155847!GO:0048144;fibroblast proliferation;0.0426419444155847!GO:0048145;regulation of fibroblast proliferation;0.0426419444155847!GO:0032507;maintenance of cellular protein localization;0.0428927833442511!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0429714493906967!GO:0000287;magnesium ion binding;0.0429714493906967!GO:0001952;regulation of cell-matrix adhesion;0.0441137883985188!GO:0030031;cell projection biogenesis;0.0443970983483883!GO:0030503;regulation of cell redox homeostasis;0.0446261638253763!GO:0008234;cysteine-type peptidase activity;0.0446261638253763!GO:0005669;transcription factor TFIID complex;0.04492467849925!GO:0005874;microtubule;0.04492467849925!GO:0009081;branched chain family amino acid metabolic process;0.0451700618926784!GO:0006354;RNA elongation;0.0453589595719379!GO:0032906;transforming growth factor-beta2 production;0.0454447051797866!GO:0032909;regulation of transforming growth factor-beta2 production;0.0454447051797866!GO:0044452;nucleolar part;0.0457302086037287!GO:0045926;negative regulation of growth;0.0457312469516925!GO:0006984;ER-nuclear signaling pathway;0.0457372206809516!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0463179305319199!GO:0006518;peptide metabolic process;0.0466445379998019!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0466540185143445!GO:0001725;stress fiber;0.0467289757895987!GO:0032432;actin filament bundle;0.0467289757895987!GO:0006289;nucleotide-excision repair;0.0468816691704497!GO:0005581;collagen;0.0476938555418379!GO:0004563;beta-N-acetylhexosaminidase activity;0.0480626423833497!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0483551080092194!GO:0048037;cofactor binding;0.0483746850798229!GO:0006733;oxidoreduction coenzyme metabolic process;0.0484484755478293!GO:0006302;double-strand break repair;0.048919363248227!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0490905556596608!GO:0005758;mitochondrial intermembrane space;0.049259182811206!GO:0045334;clathrin-coated endocytic vesicle;0.049455617692365!GO:0032984;macromolecular complex disassembly;0.049455617692365!GO:0007021;tubulin folding;0.0497756558653948!GO:0015248;sterol transporter activity;0.0497756558653948!GO:0050178;phenylpyruvate tautomerase activity;0.0498273227654315
|sample_id=11391
|sample_id=11391
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=brain
|sample_tissue=brain
|top_motifs=TAL1_TCF{3,4,12}:1.81750057994;NR3C1:1.63375765397;TFAP4:1.44022423092;NKX3-1:1.40479404697;HSF1,2:1.22160590138;AIRE:1.17673295162;GLI1..3:1.09668816886;TEAD1:1.07143708582;SRF:1.02398890324;RXRA_VDR{dimer}:1.02049636549;HOX{A5,B5}:1.01411114318;EVI1:0.962734447409;GZF1:0.946794931988;MYBL2:0.879036421576;XBP1:0.870731418691;EBF1:0.8333020529;IKZF1:0.805375747959;SOX17:0.782578060573;NKX2-1,4:0.757434280851;ATF6:0.74603025356;UFEwm:0.688570139893;TLX1..3_NFIC{dimer}:0.684887621036;GTF2A1,2:0.66096439164;TEF:0.642721270467;MAFB:0.639785954017;EN1,2:0.639631720733;SP1:0.639600568087;TFCP2:0.591899082833;NKX2-2,8:0.59051616557;NANOG{mouse}:0.582100282111;ZNF238:0.578114071497;MAZ:0.573506321786;NR6A1:0.559627395295;NFATC1..3:0.558860847777;PAX1,9:0.54371431265;bHLH_family:0.532456777546;NFE2L1:0.515481087813;PATZ1:0.514666327744;TFAP2{A,C}:0.501803803463;ESR1:0.4919388358;RXR{A,B,G}:0.489605080666;TBX4,5:0.468245430695;SPZ1:0.423881779359;PAX5:0.414784649211;TOPORS:0.402456398388;HMGA1,2:0.390826399978;HIC1:0.387426530722;HOXA9_MEIS1:0.386266545989;LHX3,4:0.385471250212;HMX1:0.384092989115;POU3F1..4:0.381566525403;ADNP_IRX_SIX_ZHX:0.374766239057;NFE2L2:0.361476655008;GFI1B:0.36106070004;SREBF1,2:0.346843949627;ALX4:0.341369811405;CDC5L:0.338004959901;GTF2I:0.336613170792;ZBTB6:0.326226289045;ESRRA:0.321215906046;MTE{core}:0.3178787243;TP53:0.317176292285;MZF1:0.311029253009;NR5A1,2:0.283929983336;KLF4:0.275226615142;AHR_ARNT_ARNT2:0.274107839376;PPARG:0.270273207679;TFAP2B:0.216414507371;ZIC1..3:0.192403684245;ZNF384:0.191717180401;HNF4A_NR2F1,2:0.158522398737;HLF:0.123623753388;ONECUT1,2:0.122657154977;HNF1A:0.116460683418;XCPE1{core}:0.112376440706;STAT5{A,B}:0.106777387901;POU1F1:0.1038191554;NHLH1,2:0.0923708837062;ZNF148:0.0894416793985;ARID5B:0.0620895889956;MYFfamily:0.057114486233;PRRX1,2:0.0506341326378;STAT2,4,6:0.0502144717288;TBP:0.0448497883786;NKX2-3_NKX2-5:0.043580311549;NR1H4:0.0332244341843;ZBTB16:0.0320560248156;HES1:0.028576227102;TLX2:0.0159794347222;IRF1,2:-0.0149529609611;ALX1:-0.027612638943;SMAD1..7,9:-0.0423286307804;HIF1A:-0.0556627650096;AR:-0.0636734275742;EGR1..3:-0.0661992967403;CDX1,2,4:-0.0682360435563;DBP:-0.0743634632723;ZNF423:-0.0835868757431;GATA4:-0.08518643531;ZNF143:-0.0864068564436;SOX5:-0.0929090370297;STAT1,3:-0.0981259045621;ELK1,4_GABP{A,B1}:-0.121695781926;FOXL1:-0.134943959867;PAX3,7:-0.139129550649;GFI1:-0.146211321347;BACH2:-0.147426045626;ZFP161:-0.153606441518;YY1:-0.156517043306;GCM1,2:-0.160946919948;FOSL2:-0.164160309553;HOX{A4,D4}:-0.164289690968;IRF7:-0.165330888454;HAND1,2:-0.165637658551;TFDP1:-0.172072129551;PAX2:-0.192099113294;NRF1:-0.198439001614;PRDM1:-0.221966703854;NFIX:-0.223664657108;NKX3-2:-0.226199716176;FOS_FOS{B,L1}_JUN{B,D}:-0.257501962972;RUNX1..3:-0.258427771953;ETS1,2:-0.268228257398;PAX6:-0.268713522879;REST:-0.27335003971;NFE2:-0.292935334994;MEF2{A,B,C,D}:-0.299408774012;CEBPA,B_DDIT3:-0.305523779182;NFKB1_REL_RELA:-0.317553516412;LMO2:-0.33883448353;NKX6-1,2:-0.348057050218;MED-1{core}:-0.348848639642;NFY{A,B,C}:-0.360831674955;FOXP3:-0.376081682535;CRX:-0.377486503383;JUN:-0.378248319962;FOX{I1,J2}:-0.382873852199;POU5F1:-0.400819279177;HOX{A6,A7,B6,B7}:-0.422770316498;ATF2:-0.434216667443;LEF1_TCF7_TCF7L1,2:-0.434361177098;PAX8:-0.434794472107;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435048146763;RORA:-0.44318494723;TGIF1:-0.448519974314;FOXD3:-0.463129291696;RREB1:-0.467092375332;ELF1,2,4:-0.474436319745;MTF1:-0.478067932043;FOXA2:-0.486289399685;FOXM1:-0.486773582034;RFX1:-0.488844477669;DMAP1_NCOR{1,2}_SMARC:-0.498494135318;SPIB:-0.509178289762;BREu{core}:-0.515319218819;GATA6:-0.524090567669;FOXN1:-0.537326514152;NFIL3:-0.549241709892;OCT4_SOX2{dimer}:-0.549264378257;MYB:-0.584642325698;NANOG:-0.586791104051;RBPJ:-0.592853028707;SNAI1..3:-0.605051739;FOX{D1,D2}:-0.608864542659;SPI1:-0.609121557951;FOXP1:-0.614241867229;FOX{F1,F2,J1}:-0.634407928243;ATF5_CREB3:-0.639161696697;FOXO1,3,4:-0.668677278048;PAX4:-0.668763081865;POU6F1:-0.668880594379;CREB1:-0.703903780118;RFX2..5_RFXANK_RFXAP:-0.723122576691;E2F1..5:-0.743812799403;CUX2:-0.803965474454;SOX2:-0.809258405757;PITX1..3:-0.80929513057;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.812140720061;HBP1_HMGB_SSRP1_UBTF:-0.813618006839;EP300:-0.831045431823;ATF4:-0.841801041789;PBX1:-0.891706700679;VSX1,2:-0.896957312555;ZEB1:-0.89767098106;IKZF2:-0.939015194095;SOX{8,9,10}:-0.943287163259;BPTF:-0.953133311634;MYOD1:-1.0501701313;POU2F1..3:-1.05126951475;T:-1.10111829843;FOXQ1:-1.1115118833;PDX1:-1.37477207495
|top_motifs=TAL1_TCF{3,4,12}:1.81750057994;NR3C1:1.63375765397;TFAP4:1.44022423092;NKX3-1:1.40479404697;HSF1,2:1.22160590138;AIRE:1.17673295162;GLI1..3:1.09668816886;TEAD1:1.07143708582;SRF:1.02398890324;RXRA_VDR{dimer}:1.02049636549;HOX{A5,B5}:1.01411114318;EVI1:0.962734447409;GZF1:0.946794931988;MYBL2:0.879036421576;XBP1:0.870731418691;EBF1:0.8333020529;IKZF1:0.805375747959;SOX17:0.782578060573;NKX2-1,4:0.757434280851;ATF6:0.74603025356;UFEwm:0.688570139893;TLX1..3_NFIC{dimer}:0.684887621036;GTF2A1,2:0.66096439164;TEF:0.642721270467;MAFB:0.639785954017;EN1,2:0.639631720733;SP1:0.639600568087;TFCP2:0.591899082833;NKX2-2,8:0.59051616557;NANOG{mouse}:0.582100282111;ZNF238:0.578114071497;MAZ:0.573506321786;NR6A1:0.559627395295;NFATC1..3:0.558860847777;PAX1,9:0.54371431265;bHLH_family:0.532456777546;NFE2L1:0.515481087813;PATZ1:0.514666327744;TFAP2{A,C}:0.501803803463;ESR1:0.4919388358;RXR{A,B,G}:0.489605080666;TBX4,5:0.468245430695;SPZ1:0.423881779359;PAX5:0.414784649211;TOPORS:0.402456398388;HMGA1,2:0.390826399978;HIC1:0.387426530722;HOXA9_MEIS1:0.386266545989;LHX3,4:0.385471250212;HMX1:0.384092989115;POU3F1..4:0.381566525403;ADNP_IRX_SIX_ZHX:0.374766239057;NFE2L2:0.361476655008;GFI1B:0.36106070004;SREBF1,2:0.346843949627;ALX4:0.341369811405;CDC5L:0.338004959901;GTF2I:0.336613170792;ZBTB6:0.326226289045;ESRRA:0.321215906046;MTE{core}:0.3178787243;TP53:0.317176292285;MZF1:0.311029253009;NR5A1,2:0.283929983336;KLF4:0.275226615142;AHR_ARNT_ARNT2:0.274107839376;PPARG:0.270273207679;TFAP2B:0.216414507371;ZIC1..3:0.192403684245;ZNF384:0.191717180401;HNF4A_NR2F1,2:0.158522398737;HLF:0.123623753388;ONECUT1,2:0.122657154977;HNF1A:0.116460683418;XCPE1{core}:0.112376440706;STAT5{A,B}:0.106777387901;POU1F1:0.1038191554;NHLH1,2:0.0923708837062;ZNF148:0.0894416793985;ARID5B:0.0620895889956;MYFfamily:0.057114486233;PRRX1,2:0.0506341326378;STAT2,4,6:0.0502144717288;TBP:0.0448497883786;NKX2-3_NKX2-5:0.043580311549;NR1H4:0.0332244341843;ZBTB16:0.0320560248156;HES1:0.028576227102;TLX2:0.0159794347222;IRF1,2:-0.0149529609611;ALX1:-0.027612638943;SMAD1..7,9:-0.0423286307804;HIF1A:-0.0556627650096;AR:-0.0636734275742;EGR1..3:-0.0661992967403;CDX1,2,4:-0.0682360435563;DBP:-0.0743634632723;ZNF423:-0.0835868757431;GATA4:-0.08518643531;ZNF143:-0.0864068564436;SOX5:-0.0929090370297;STAT1,3:-0.0981259045621;ELK1,4_GABP{A,B1}:-0.121695781926;FOXL1:-0.134943959867;PAX3,7:-0.139129550649;GFI1:-0.146211321347;BACH2:-0.147426045626;ZFP161:-0.153606441518;YY1:-0.156517043306;GCM1,2:-0.160946919948;FOSL2:-0.164160309553;HOX{A4,D4}:-0.164289690968;IRF7:-0.165330888454;HAND1,2:-0.165637658551;TFDP1:-0.172072129551;PAX2:-0.192099113294;NRF1:-0.198439001614;PRDM1:-0.221966703854;NFIX:-0.223664657108;NKX3-2:-0.226199716176;FOS_FOS{B,L1}_JUN{B,D}:-0.257501962972;RUNX1..3:-0.258427771953;ETS1,2:-0.268228257398;PAX6:-0.268713522879;REST:-0.27335003971;NFE2:-0.292935334994;MEF2{A,B,C,D}:-0.299408774012;CEBPA,B_DDIT3:-0.305523779182;NFKB1_REL_RELA:-0.317553516412;LMO2:-0.33883448353;NKX6-1,2:-0.348057050218;MED-1{core}:-0.348848639642;NFY{A,B,C}:-0.360831674955;FOXP3:-0.376081682535;CRX:-0.377486503383;JUN:-0.378248319962;FOX{I1,J2}:-0.382873852199;POU5F1:-0.400819279177;HOX{A6,A7,B6,B7}:-0.422770316498;ATF2:-0.434216667443;LEF1_TCF7_TCF7L1,2:-0.434361177098;PAX8:-0.434794472107;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435048146763;RORA:-0.44318494723;TGIF1:-0.448519974314;FOXD3:-0.463129291696;RREB1:-0.467092375332;ELF1,2,4:-0.474436319745;MTF1:-0.478067932043;FOXA2:-0.486289399685;FOXM1:-0.486773582034;RFX1:-0.488844477669;DMAP1_NCOR{1,2}_SMARC:-0.498494135318;SPIB:-0.509178289762;BREu{core}:-0.515319218819;GATA6:-0.524090567669;FOXN1:-0.537326514152;NFIL3:-0.549241709892;OCT4_SOX2{dimer}:-0.549264378257;MYB:-0.584642325698;NANOG:-0.586791104051;RBPJ:-0.592853028707;SNAI1..3:-0.605051739;FOX{D1,D2}:-0.608864542659;SPI1:-0.609121557951;FOXP1:-0.614241867229;FOX{F1,F2,J1}:-0.634407928243;ATF5_CREB3:-0.639161696697;FOXO1,3,4:-0.668677278048;PAX4:-0.668763081865;POU6F1:-0.668880594379;CREB1:-0.703903780118;RFX2..5_RFXANK_RFXAP:-0.723122576691;E2F1..5:-0.743812799403;CUX2:-0.803965474454;SOX2:-0.809258405757;PITX1..3:-0.80929513057;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.812140720061;HBP1_HMGB_SSRP1_UBTF:-0.813618006839;EP300:-0.831045431823;ATF4:-0.841801041789;PBX1:-0.891706700679;VSX1,2:-0.896957312555;ZEB1:-0.89767098106;IKZF2:-0.939015194095;SOX{8,9,10}:-0.943287163259;BPTF:-0.953133311634;MYOD1:-1.0501701313;POU2F1..3:-1.05126951475;T:-1.10111829843;FOXQ1:-1.1115118833;PDX1:-1.37477207495
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11391-118C5;search_select_hide=table117:FF:11391-118C5
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Smooth Muscle Cells - Brain Vascular, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12004
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stagefetus
sexunknown
agefetal
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4342
catalog numberSC1105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005430
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12004 CAGE DRX008477 DRR009349
Accession ID Hg19

Library idBAMCTSS
CNhs12004 DRZ000774 DRZ002159
Accession ID Hg38

Library idBAMCTSS
CNhs12004 DRZ012124 DRZ013509
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005430
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.TAGCTT sRNA-Seq DRX037019 DRR041385
Accession ID Hg19

Library idBAMCTSS
SRhi10003.TAGCTT DRZ007027


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.103
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.246
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0117
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.434
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.387
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.461
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0758
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0758
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.234
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.129
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.14
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0758
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.565
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.246
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.746
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.715
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.463
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12004

Jaspar motifP-value
MA0002.20.152
MA0003.10.229
MA0004.10.642
MA0006.10.0515
MA0007.10.105
MA0009.10.295
MA0014.10.775
MA0017.10.538
MA0018.22.59631e-4
MA0019.10.831
MA0024.15.70974e-6
MA0025.10.00165
MA0027.10.296
MA0028.10.102
MA0029.10.203
MA0030.10.0877
MA0031.10.0122
MA0035.20.377
MA0038.10.805
MA0039.20.794
MA0040.10.957
MA0041.10.221
MA0042.10.421
MA0043.15.03715e-4
MA0046.10.638
MA0047.20.276
MA0048.10.515
MA0050.10.216
MA0051.10.534
MA0052.17.70665e-4
MA0055.10.439
MA0057.10.78
MA0058.10.677
MA0059.10.189
MA0060.10.0179
MA0061.10.0053
MA0062.29.55257e-6
MA0065.20.288
MA0066.10.572
MA0067.10.00865
MA0068.10.841
MA0069.10.26
MA0070.10.955
MA0071.10.285
MA0072.10.393
MA0073.10.739
MA0074.10.178
MA0076.10.0109
MA0077.10.702
MA0078.10.325
MA0079.20.4
MA0080.29.40174e-10
MA0081.10.00858
MA0083.19.1041e-4
MA0084.10.173
MA0087.10.0706
MA0088.10.63
MA0090.19.70695e-6
MA0091.10.0197
MA0092.10.233
MA0093.10.772
MA0099.20.00304
MA0100.10.171
MA0101.10.0188
MA0102.20.711
MA0103.10.00439
MA0104.20.0143
MA0105.10.0188
MA0106.10.56
MA0107.10.0131
MA0108.20.209
MA0111.10.974
MA0112.20.227
MA0113.10.403
MA0114.10.372
MA0115.10.168
MA0116.10.0537
MA0117.10.236
MA0119.10.298
MA0122.10.846
MA0124.10.502
MA0125.10.945
MA0131.10.15
MA0135.10.118
MA0136.14.22951e-13
MA0137.20.754
MA0138.20.327
MA0139.10.42
MA0140.10.638
MA0141.10.966
MA0142.10.458
MA0143.10.681
MA0144.10.194
MA0145.10.216
MA0146.10.3
MA0147.10.0119
MA0148.10.642
MA0149.10.356
MA0150.10.112
MA0152.10.86
MA0153.10.215
MA0154.10.221
MA0155.10.185
MA0156.16.61796e-8
MA0157.10.0431
MA0159.10.314
MA0160.10.353
MA0162.10.0227
MA0163.10.746
MA0164.10.619
MA0258.10.724
MA0259.10.113



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12004

Novel motifP-value
10.32
100.221
1000.701
1010.452
1020.0619
1030.628
1040.575
1050.158
1060.451
1070.128
1080.365
1090.619
110.992
1100.895
1110.129
1120.349
1130.649
1140.654
1150.145
1160.033
1170.54
1180.299
1190.742
120.189
1200.363
1210.67
1220.0175
1230.0102
1240.289
1250.0584
1260.976
1270.758
1280.22
1290.334
130.321
1300.446
1310.935
1320.445
1330.494
1340.439
1350.254
1360.234
1370.0261
1380.891
1390.512
140.209
1400.338
1410.128
1420.743
1430.46
1440.51
1450.394
1460.799
1470.109
1480.64
1490.315
150.544
1500.413
1510.358
1520.0286
1530.568
1540.415
1550.00645
1560.3
1570.384
1580.0114
1590.405
160.077
1600.781
1610.806
1620.358
1630.131
1640.299
1650.0491
1660.231
1670.511
1680.103
1690.225
170.86
180.958
190.253
20.431
200.34
210.88
220.249
230.37
240.46
250.0384
260.312
270.505
280.194
290.779
30.948
300.38
310.366
322.96932e-18
330.849
340.513
350.145
360.0378
370.684
380.372
390.586
40.0694
400.286
410.0824
420.353
430.56
440.282
450.94
460.718
470.728
480.852
490.103
50.614
500.834
510.521
520.723
530.152
540.66
550.245
560.788
570.896
580.0246
590.699
60.569
600.462
610.938
620.0655
630.938
640.542
650.831
660.904
670.273
680.864
690.667
70.215
700.322
710.505
720.975
730.0243
740.834
750.116
760.494
770.245
780.961
790.0801
80.373
800.135
810.868
820.813
830.92
840.855
850.458
860.964
870.0272
880.997
890.693
90.791
900.38
910.776
920.158
930.118
940.619
950.442
960.389
970.418
980.0872
992.03874e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12004


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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