FF:11391-118C5: Difference between revisions

Latest revision as of 17:57, 4 June 2020

Name:	Smooth Muscle Cells - Brain Vascular, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12004
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	fetus
sex	unknown
age	fetal
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4342
catalog number	SC1105
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005430

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12004		CAGE		DRX008477		DRR009349

Accession ID Hg19

Library id		BAM		CTSS
CNhs12004		DRZ000774		DRZ002159

Accession ID Hg38

Library id		BAM		CTSS
CNhs12004		DRZ012124		DRZ013509

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005430

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.TAGCTT		sRNA-Seq		DRX037019		DRR041385

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.TAGCTT		DRZ007027

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.103
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.246
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0117
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.434
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.387
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.461
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0758
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0758
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.234
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.129
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.14
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0758
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.565
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.246
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.746
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.715
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.463
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12004

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.152
MA0003.1	MA0003.1	0.229
MA0004.1	MA0004.1	0.642
MA0006.1	MA0006.1	0.0515
MA0007.1	MA0007.1	0.105
MA0009.1	MA0009.1	0.295
MA0014.1	MA0014.1	0.775
MA0017.1	MA0017.1	0.538
MA0018.2	MA0018.2	2.59631e-4
MA0019.1	MA0019.1	0.831
MA0024.1	MA0024.1	5.70974e-6
MA0025.1	MA0025.1	0.00165
MA0027.1	MA0027.1	0.296
MA0028.1	MA0028.1	0.102
MA0029.1	MA0029.1	0.203
MA0030.1	MA0030.1	0.0877
MA0031.1	MA0031.1	0.0122
MA0035.2	MA0035.2	0.377
MA0038.1	MA0038.1	0.805
MA0039.2	MA0039.2	0.794
MA0040.1	MA0040.1	0.957
MA0041.1	MA0041.1	0.221
MA0042.1	MA0042.1	0.421
MA0043.1	MA0043.1	5.03715e-4
MA0046.1	MA0046.1	0.638
MA0047.2	MA0047.2	0.276
MA0048.1	MA0048.1	0.515
MA0050.1	MA0050.1	0.216
MA0051.1	MA0051.1	0.534
MA0052.1	MA0052.1	7.70665e-4
MA0055.1	MA0055.1	0.439
MA0057.1	MA0057.1	0.78
MA0058.1	MA0058.1	0.677
MA0059.1	MA0059.1	0.189
MA0060.1	MA0060.1	0.0179
MA0061.1	MA0061.1	0.0053
MA0062.2	MA0062.2	9.55257e-6
MA0065.2	MA0065.2	0.288
MA0066.1	MA0066.1	0.572
MA0067.1	MA0067.1	0.00865
MA0068.1	MA0068.1	0.841
MA0069.1	MA0069.1	0.26
MA0070.1	MA0070.1	0.955
MA0071.1	MA0071.1	0.285
MA0072.1	MA0072.1	0.393
MA0073.1	MA0073.1	0.739
MA0074.1	MA0074.1	0.178
MA0076.1	MA0076.1	0.0109
MA0077.1	MA0077.1	0.702
MA0078.1	MA0078.1	0.325
MA0079.2	MA0079.2	0.4
MA0080.2	MA0080.2	9.40174e-10
MA0081.1	MA0081.1	0.00858
MA0083.1	MA0083.1	9.1041e-4
MA0084.1	MA0084.1	0.173
MA0087.1	MA0087.1	0.0706
MA0088.1	MA0088.1	0.63
MA0090.1	MA0090.1	9.70695e-6
MA0091.1	MA0091.1	0.0197
MA0092.1	MA0092.1	0.233
MA0093.1	MA0093.1	0.772
MA0099.2	MA0099.2	0.00304
MA0100.1	MA0100.1	0.171
MA0101.1	MA0101.1	0.0188
MA0102.2	MA0102.2	0.711
MA0103.1	MA0103.1	0.00439
MA0104.2	MA0104.2	0.0143
MA0105.1	MA0105.1	0.0188
MA0106.1	MA0106.1	0.56
MA0107.1	MA0107.1	0.0131
MA0108.2	MA0108.2	0.209
MA0111.1	MA0111.1	0.974
MA0112.2	MA0112.2	0.227
MA0113.1	MA0113.1	0.403
MA0114.1	MA0114.1	0.372
MA0115.1	MA0115.1	0.168
MA0116.1	MA0116.1	0.0537
MA0117.1	MA0117.1	0.236
MA0119.1	MA0119.1	0.298
MA0122.1	MA0122.1	0.846
MA0124.1	MA0124.1	0.502
MA0125.1	MA0125.1	0.945
MA0131.1	MA0131.1	0.15
MA0135.1	MA0135.1	0.118
MA0136.1	MA0136.1	4.22951e-13
MA0137.2	MA0137.2	0.754
MA0138.2	MA0138.2	0.327
MA0139.1	MA0139.1	0.42
MA0140.1	MA0140.1	0.638
MA0141.1	MA0141.1	0.966
MA0142.1	MA0142.1	0.458
MA0143.1	MA0143.1	0.681
MA0144.1	MA0144.1	0.194
MA0145.1	MA0145.1	0.216
MA0146.1	MA0146.1	0.3
MA0147.1	MA0147.1	0.0119
MA0148.1	MA0148.1	0.642
MA0149.1	MA0149.1	0.356
MA0150.1	MA0150.1	0.112
MA0152.1	MA0152.1	0.86
MA0153.1	MA0153.1	0.215
MA0154.1	MA0154.1	0.221
MA0155.1	MA0155.1	0.185
MA0156.1	MA0156.1	6.61796e-8
MA0157.1	MA0157.1	0.0431
MA0159.1	MA0159.1	0.314
MA0160.1	MA0160.1	0.353
MA0162.1	MA0162.1	0.0227
MA0163.1	MA0163.1	0.746
MA0164.1	MA0164.1	0.619
MA0258.1	MA0258.1	0.724
MA0259.1	MA0259.1	0.113

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12004

Novel motif	Logo	P-value
1	1	0.32
10	10	0.221
100	100	0.701
101	101	0.452
102	102	0.0619
103	103	0.628
104	104	0.575
105	105	0.158
106	106	0.451
107	107	0.128
108	108	0.365
109	109	0.619
11	11	0.992
110	110	0.895
111	111	0.129
112	112	0.349
113	113	0.649
114	114	0.654
115	115	0.145
116	116	0.033
117	117	0.54
118	118	0.299
119	119	0.742
12	12	0.189
120	120	0.363
121	121	0.67
122	122	0.0175
123	123	0.0102
124	124	0.289
125	125	0.0584
126	126	0.976
127	127	0.758
128	128	0.22
129	129	0.334
13	13	0.321
130	130	0.446
131	131	0.935
132	132	0.445
133	133	0.494
134	134	0.439
135	135	0.254
136	136	0.234
137	137	0.0261
138	138	0.891
139	139	0.512
14	14	0.209
140	140	0.338
141	141	0.128
142	142	0.743
143	143	0.46
144	144	0.51
145	145	0.394
146	146	0.799
147	147	0.109
148	148	0.64
149	149	0.315
15	15	0.544
150	150	0.413
151	151	0.358
152	152	0.0286
153	153	0.568
154	154	0.415
155	155	0.00645
156	156	0.3
157	157	0.384
158	158	0.0114
159	159	0.405
16	16	0.077
160	160	0.781
161	161	0.806
162	162	0.358
163	163	0.131
164	164	0.299
165	165	0.0491
166	166	0.231
167	167	0.511
168	168	0.103
169	169	0.225
17	17	0.86
18	18	0.958
19	19	0.253
2	2	0.431
20	20	0.34
21	21	0.88
22	22	0.249
23	23	0.37
24	24	0.46
25	25	0.0384
26	26	0.312
27	27	0.505
28	28	0.194
29	29	0.779
3	3	0.948
30	30	0.38
31	31	0.366
32	32	2.96932e-18
33	33	0.849
34	34	0.513
35	35	0.145
36	36	0.0378
37	37	0.684
38	38	0.372
39	39	0.586
4	4	0.0694
40	40	0.286
41	41	0.0824
42	42	0.353
43	43	0.56
44	44	0.282
45	45	0.94
46	46	0.718
47	47	0.728
48	48	0.852
49	49	0.103
5	5	0.614
50	50	0.834
51	51	0.521
52	52	0.723
53	53	0.152
54	54	0.66
55	55	0.245
56	56	0.788
57	57	0.896
58	58	0.0246
59	59	0.699
6	6	0.569
60	60	0.462
61	61	0.938
62	62	0.0655
63	63	0.938
64	64	0.542
65	65	0.831
66	66	0.904
67	67	0.273
68	68	0.864
69	69	0.667
7	7	0.215
70	70	0.322
71	71	0.505
72	72	0.975
73	73	0.0243
74	74	0.834
75	75	0.116
76	76	0.494
77	77	0.245
78	78	0.961
79	79	0.0801
8	8	0.373
80	80	0.135
81	81	0.868
82	82	0.813
83	83	0.92
84	84	0.855
85	85	0.458
86	86	0.964
87	87	0.0272
88	88	0.997
89	89	0.693
9	9	0.791
90	90	0.38
91	91	0.776
92	92	0.158
93	93	0.118
94	94	0.619
95	95	0.442
96	96	0.389
97	97	0.418
98	98	0.0872
99	99	2.03874e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12004

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000170 human smooth muscle cell of the brain vasculature sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001134,UBERON:0002100,UBERON:0000483,UBERON:0000033,UBERON:0000926,UBERON:0000479,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0002036,UBERON:0002385,UBERON:0002049,UBERON:0005284,UBERON:0000486,UBERON:0003104,UBERON:0002200,UBERON:0006876,UBERON:0000914,UBERON:0005256,UBERON:0006598,UBERON:0007798,UBERON:0001015,UBERON:0002532,UBERON:0001017,UBERON:0002329,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0000924,UBERON:0004535,UBERON:0005743,UBERON:0000383,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0001009,UBERON:0006238,UBERON:0006601,UBERON:0006603,UBERON:0003082,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00005430
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000359,CL:0000222,CL:0002590,CL:0000355,CL:0000514
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005430
+|accession_numbers=CAGE;DRX008477;DRR009349;DRZ000774;DRZ002159;DRZ012124;DRZ013509
+|accession_numbers_RNASeq=sRNA-Seq;DRX037019;DRR041385;DRZ007027
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000170
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr15:83953397..83953425,-!p1@BNC1!1.67!52.80!BNC1;;chr11:61520075..61520136,+!p1@C11orf9!1.44!54.71!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!1.41!30.31!FOXF1;;chr15:42749722..42749739,-!p2@ZFP106!1.36!38.70!ZFP106;;chr4:174451370..174451387,-!p1@HAND2!1.31!19.63!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.26!17.35!TBX20;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.58!HIF3A;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.31!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.23!15.82!HAND2;;chr14:62162285..62162296,+!p3@HIF1A!1.19!73.96!HIF1A;;chr8:11561684..11561751,+!p1@GATA4!1.19!14.49!GATA4;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.55!TWIST1;;chr14:62162258..62162269,+!p2@HIF1A!1.10!110.76!HIF1A;;chr8:106330656..106330684,+!p1@ZFPM2!1.10!30.88!ZFPM2;;chr2:185463247..185463263,+!p1@ZNF804A!1.06!18.87!ZNF804A;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!16.97!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.03!9.72!TCF21;;chr5:92918919..92918942,+!p1@NR2F1!1.01!41.75!NR2F1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.97!8.39!SEBOX;;chr2:46524537..46524553,+!p1@EPAS1!0.96!816.85!EPAS1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!8.01!KDM5D;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.73!TBX18;;chr17:1959369..1959388,+!p2@HIC1!0.84!16.58!HIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.08!SNAI2;;chr3:150126759..150126784,+!p2@TSC22D2!0.83!27.83!TSC22D2;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.25!GATA6;;chr17:46622070..46622109,-!p1@HOXB2!0.83!13.34!HOXB2;;chr17:46655704..46655718,-!p2@HOXB4!0.83!8.96!HOXB4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.83!5.72!RUNX1T1;;chr8:37963466..37963506,+!p3@ASH2L!0.82!7.24!ASH2L;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.02!MEIS1;;chr12:104531823..104531849,-!p5@NFYB!0.81!12.01!NFYB;;chr15:83953373..83953386,-!p2@BNC1!0.81!5.53!BNC1;;chr17:46621937..46621966,-!p2@HOXB2!0.80!15.44!HOXB2;;chr11:12696071..12696086,+!p3@TEAD1!0.80!7.24!TEAD1;;chrY:2803415..2803468,+!p1@ZFY!0.80!5.34!ZFY;;chr8:106330696..106330719,+!p2@ZFPM2!0.79!6.67!ZFPM2;;chr3:178789522..178789564,-!p2@ZMAT3!0.78!40.22!ZMAT3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.77!4.96!RUNX1T1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.77!4.96!SEBOX;;chr2:231084820..231084836,-!p5@SP110!0.76!5.53!SP110;;chr3:147127142..147127168,+!p1@ZIC1!0.76!4.77!ZIC1;;chr7:28220198..28220269,-!p2@JAZF1!0.75!45.94!JAZF1;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.58!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.75!4.58!ZIC1;;chr12:80085061..80085119,-!p6@PAWR!0.74!7.63!PAWR;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.67!NR2F2;;chr14:62213758..62213774,+!p8@HIF1A!0.74!5.91!HIF1A;;chr14:62162224..62162254,+!p1@HIF1A!0.73!712.39!HIF1A;;chr3:150126904..150126958,+!p7@TSC22D2!0.72!7.82!TSC22D2;;chr5:92918956..92918969,+!p4@NR2F1!0.72!4.77!NR2F1;;chr11:32457075..32457095,-!p1@WT1!0.72!4.19!WT1;;chr9:16870710..16870763,-!p1@BNC2!0.71!7.63!BNC2;;chr6:45296048..45296082,+!p1@RUNX2!0.71!4.77!RUNX2;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.60!SNAI2;;chr17:46622114..46622138,-!p4@HOXB2!0.70!6.48!HOXB2;;chr8:55370487..55370503,+!p1@SOX17!0.70!4.00!SOX17;;chr3:147111231..147111281,+!p3@ZIC1!0.70!4.00!ZIC1;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.68!TWIST1;;chr11:113930425..113930471,+!p1@ZBTB16!0.68!5.72!ZBTB16;;chr12:24715376..24715432,-!p1@SOX5!0.68!4.96!SOX5;;chr2:27357446..27357475,-!p2@PREB!0.66!13.92!PREB;;chr2:46524897..46524911,+!p2@EPAS1!0.66!11.06!EPAS1;;chr14:62203595..62203676,+!p4@HIF1A!0.66!7.24!HIF1A;;chr3:25469724..25469773,+!p1@RARB!0.66!5.53!RARB;;chr2:46602901..46602926,+!p7@EPAS1!0.66!4.96!EPAS1;;chr17:46675420..46675465,-!p3@HOXB6!0.66!4.19!HOXB6;;chr12:66218836..66218888,+!p1@HMGA2!0.65!37.74!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!0.65!17.35!PCBP3;;chr12:66218255..66218304,+!p3@HMGA2!0.65!10.48!HMGA2;;chr7:44143978..44143989,+!p2@AEBP1!0.65!6.86!AEBP1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.67!GATA6;;chr5:139492456..139492489,+!p7@PURA!0.65!3.43!PURA;;chr12:66218598..66218645,+!p2@HMGA2!0.63!17.35!HMGA2;;chr15:83953474..83953483,-!p3@BNC1!0.63!3.24!BNC1;;chr1:151032860..151032918,+!p1@MLLT11!0.62!45.37!MLLT11;;chr9:4300050..4300118,-!p1@GLIS3!0.62!24.21!GLIS3;;chr5:92919100..92919135,+!p3@NR2F1!0.62!4.00!NR2F1;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.00!TBX18;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.62!3.43!GLIS1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.07!HIC1;;chr2:19558373..19558392,-!p1@OSR1!0.61!9.53!OSR1;;chr15:96869255..96869291,+!p6@NR2F2!0.61!6.10!NR2F2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.77!GATA6;;chr4:174451350..174451363,-!p3@HAND2!0.61!3.05!HAND2;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.21!AEBP1;;chr7:17338266..17338282,+!p1@AHR!0.60!38.70!AHR;;chr2:66662895..66662907,+!p3@MEIS1!0.59!3.81!MEIS1;;chrY:21906761..21906810,-!p2@KDM5D!0.59!2.86!KDM5D;;chr2:145275162..145275202,-!p2@ZEB2!0.58!20.21!ZEB2;;chr15:57511609..57511651,+!p2@TCF12!0.58!5.15!TCF12;;chr8:72756667..72756736,-!p2@MSC!0.58!4.77!MSC;;chr3:178789993..178790049,-!p5@ZMAT3!0.58!4.38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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002590;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brain%2520Vascular%252c%2520donor3.CNhs12004.11391-118C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11391-118C5
 |is_a=EFO:0002091;;FF:0000170
 |is_obsolete=
+|library_id=CNhs12004
+|library_id_phase_based=2:CNhs12004
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11391
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.TAGCTT.11391
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11391
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.TAGCTT.11391
 |name=Smooth Muscle Cells - Brain Vascular, donor3
 |namespace=FANTOM5
@@ Line 43: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12004,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10003,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=118
 |rna_catalog_number=SC1105
@@ Line 57: / Line 82: @@
 |rna_tube_id=118C5
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10003.TAGCTT
 |sample_age=fetal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11391-118C5;search_select_hide=table117:FF:11391-118C5
 }}

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FF:11391-118C5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:57, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0