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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005736
|DRA_sample_Accession=CAGE@SAMD00005736
|accession_numbers=CAGE;DRX008117;DRR008989;DRZ000414;DRZ001799
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005736
|accession_numbers=CAGE;DRX008117;DRR008989;DRZ000414;DRZ001799;DRZ011764;DRZ013149
|accession_numbers_RNASeq=sRNA-Seq;DRX037104;DRR041470;DRZ007112
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605
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|def=
|def=
|expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.07!116.13!SOX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.99!97.67!POU3F3;;chrX:25034067..25034088,-!p1@ARX!1.99!97.55!ARX;;chr14:33403881..33403924,+!p1@NPAS3!1.97!92.02!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.92!82.73!LHX2;;chr4:57547454..57547469,-!p1@HOPX!1.92!82.48!HOPX;;chr14:29235961..29236008,+!p1@FOXG1!1.91!79.59!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!1.62!40.93!SOX2;;chr9:126773880..126773895,+!p2@LHX2!1.58!37.04!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.56!35.65!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!1.56!35.15!SOX11;;chrX:139587228..139587234,-!p1@SOX3!1.53!33.27!SOX3;;chr6:45296048..45296082,+!p1@RUNX2!1.45!30.88!RUNX2;;chr19:13134772..13134822,+!p2@NFIX!1.44!38.54!NFIX;;chr9:126774058..126774081,+!p3@LHX2!1.43!25.61!LHX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.39!23.48!POU3F3;;chr2:239148671..239148686,-!p1@HES6!1.38!81.73!HES6;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.10!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.36!43.44!DACH1;;chr1:2985760..2985774,+!p1@PRDM16!1.36!21.72!PRDM16;;chr16:51185172..51185197,-!p1@SALL1!1.34!20.71!SALL1;;chr11:31839488..31839515,-!p3@PAX6!1.32!20.09!PAX6;;chr14:33403648..33403710,+!p3@NPAS3!1.30!18.96!NPAS3;;chr7:42276787..42276815,-!p1@GLI3!1.29!49.21!GLI3;;chr20:30433396..30433414,-!p1@FOXS1!1.29!18.58!FOXS1;;chrX:82763292..82763317,+!p1@POU3F4!1.29!18.33!POU3F4;;chr7:100065686..100065701,-!p2@TSC22D4!1.27!17.58!TSC22D4;;chr6:19837592..19837621,+!p1@ID4!1.25!99.93!ID4;;chr14:29236269..29236285,+!p3@FOXG1!1.25!16.82!FOXG1;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.84!TFAP2C;;chr11:31832807..31832823,-!p4@PAX6!1.24!16.45!PAX6;;chr11:31832658..31832681,-!p1@PAX6!1.24!16.32!PAX6;;chr2:63277948..63277974,+!p1@OTX1!1.23!15.82!OTX1;;chr15:80696703..80696754,+!p1@ARNT2!1.22!20.59!ARNT2;;chr13:95364784..95364806,-!p1@SOX21!1.18!14.06!SOX21;;chr13:72441074..72441172,-!p2@DACH1!1.16!13.43!DACH1;;chr9:4300050..4300118,-!p1@GLIS3!1.15!84.24!GLIS3;;chr14:73360799..73360817,-!p1@DPF3!1.15!45.45!DPF3;;chr18:53068911..53068935,-!p4@TCF4!1.15!14.94!TCF4;;chr1:50889103..50889145,-!p1@DMRTA2!1.14!12.81!DMRTA2;;chr4:57547751..57547764,-!p6@HOPX!1.14!12.81!HOPX;;chr10:119302232..119302265,+!p1@EMX2!1.11!11.93!EMX2;;chr7:42276822..42276895,-!p2@GLI3!1.10!35.03!GLI3;;chr6:99282438..99282457,+!p2@POU3F2!1.10!11.55!POU3F2;;chr16:86600426..86600441,+!p1@FOXC2!1.09!27.87!FOXC2;;chr6:108487289..108487302,+!p1@NR2E1!1.09!11.30!NR2E1;;chr5:176738887..176738934,-!p1@MXD3!1.07!72.44!MXD3;;chr12:24102576..24102623,-!p2@SOX5!1.07!10.80!SOX5;;chr6:99282475..99282501,+!p1@POU3F2!1.07!10.67!POU3F2;;chr4:57522598..57522664,-!p3@HOPX!1.05!10.29!HOPX;;chr14:33403860..33403874,+!p5@NPAS3!1.04!10.04!NPAS3;;chr16:51185318..51185348,-!p2@SALL1!1.04!10.04!SALL1;;chr5:92918919..92918942,+!p1@NR2F1!1.03!44.19!NR2F1;;chr15:37392724..37392757,-!p1@MEIS2!1.02!43.81!MEIS2;;chr15:37392094..37392116,-!p6@MEIS2!1.02!11.80!MEIS2;;chrY:21906594..21906622,-!p1@KDM5D!1.01!9.16!KDM5D;;chr17:70117153..70117174,+!p1@SOX9!0.99!92.90!SOX9;;chr19:38720294..38720348,-!p1@DPF1!0.99!10.92!DPF1;;chr9:14314131..14314147,-!p2@NFIB!0.98!49.21!NFIB;;chr20:55205825..55205847,+!p2@TFAP2C!0.96!8.03!TFAP2C;;chr3:114173654..114173696,-!p12@ZBTB20!0.94!7.78!ZBTB20;;chr2:5832493..5832507,+!p2@SOX11!0.94!7.66!SOX11;;chr16:52581025..52581072,-!p1@TOX3!0.93!7.53!TOX3;;chr8:86089417..86089440,+!p2@E2F5!0.92!14.81!E2F5;;chr12:80084279..80084293,-!p8@PAWR!0.92!12.55!PAWR;;chr14:33408072..33408114,+!p2@NPAS3!0.92!8.66!NPAS3;;chr19:13135582..13135600,+!p3@NFIX!0.92!7.41!NFIX;;chr6:85474299..85474324,-!p1@TBX18!0.91!13.06!TBX18;;chr6:108487220..108487236,+!p2@NR2E1!0.91!7.16!NR2E1;;chr4:299227..299272,-!p1@ZNF732!0.91!7.16!ZNF732;;chr8:80679993..80680011,-!p1@HEY1!0.90!10.29!HEY1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.90!7.03!ZSCAN1;;chr8:77593474..77593612,+!p1@ZFHX4!0.88!29.13!ZFHX4;;chr9:126774091..126774098,+!p4@LHX2!0.88!6.65!LHX2;;chr4:57547820..57547829,-!p8@HOPX!0.88!6.65!HOPX;;chr13:100623375..100623425,-!p1@ZIC5!0.88!6.65!ZIC5;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.40!HEYL;;chr7:42192092..42192108,-!p13@GLI3!0.86!6.28!GLI3;;chr20:42295713..42295738,+!p2@MYBL2!0.85!38.29!MYBL2;;chr1:170633348..170633399,+!p2@PRRX1!0.85!8.54!PRRX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.85!6.03!PEG3;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.81!E2F1;;chr8:67525443..67525459,-!p2@MYBL1!0.84!9.16!MYBL1;;chr18:42260840..42260860,+!p2@SETBP1!0.84!5.90!SETBP1;;chr14:33403779..33403793,+!p6@NPAS3!0.84!5.90!NPAS3;;chr2:16080659..16080685,+!p1@MYCN!0.84!5.90!MYCN;;chr12:24715376..24715432,-!p1@SOX5!0.82!7.28!SOX5;;chr4:57522166..57522260,-!p2@HOPX!0.82!6.53!HOPX;;chr19:22817119..22817145,+!p1@ZNF492!0.81!9.54!ZNF492;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.42!MLLT11;;chrX:84499081..84499115,+!p2@ZNF711!0.81!8.29!ZNF711;;chr1:23696348..23696363,-!p4@ZNF436!0.81!6.15!ZNF436;;chr16:30406423..30406447,+!p4@ZNF48!0.81!5.52!ZNF48;;ch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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002605;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg38.nobarcode.ctss.bed.gz
|id=FF:11392-118C6
|id=FF:11392-118C6
|is_a=EFO:0002091;;FF:0000194
|is_a=EFO:0002091;;FF:0000194
Line 46: Line 54:
|library_id=CNhs12005
|library_id=CNhs12005
|library_id_phase_based=2:CNhs12005
|library_id_phase_based=2:CNhs12005
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11392
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTGAAA.11392
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11392
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTGAAA.11392
|name=Astrocyte - cerebral cortex, donor3
|name=Astrocyte - cerebral cortex, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10007,,,
|profile_srnaseq=SRhi10007,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=TFDP1:2.42117043707;GFI1:2.41633997969;OCT4_SOX2{dimer}:2.17714134858;NFY{A,B,C}:1.81518293591;E2F1..5:1.60906684864;XCPE1{core}:1.57435924212;ZIC1..3:1.56953695364;RBPJ:1.5053410036;SOX2:1.49417885796;SOX17:1.47345835292;SOX{8,9,10}:1.40608217929;POU1F1:1.31712864832;ZNF384:1.29549730554;NKX2-3_NKX2-5:1.29398603839;GTF2A1,2:1.28849779428;NKX2-1,4:1.25659737485;PBX1:1.11777427611;MTE{core}:1.09847243876;POU5F1:1.09217525413;MZF1:1.08774246255;PAX6:1.08768414195;LEF1_TCF7_TCF7L1,2:1.08681508918;TFAP2B:1.0796190597;LHX3,4:1.06856362418;GCM1,2:1.06522230956;NKX6-1,2:1.06100077082;BREu{core}:1.00029651818;TOPORS:0.966044642325;SP1:0.949289055438;HIC1:0.949077346554;CDC5L:0.941995436627;EGR1..3:0.923000698265;NR6A1:0.913381925603;ZFP161:0.860868733549;NANOG:0.85206592588;MYB:0.830383271693;NR3C1:0.821325762063;POU3F1..4:0.812814592717;MAZ:0.802444413856;PITX1..3:0.798801578398;ZNF143:0.787569051229;TFAP2{A,C}:0.771443984514;CDX1,2,4:0.769714373061;FOXP1:0.762225874232;NRF1:0.719153186753;ONECUT1,2:0.686635316807;UFEwm:0.669942076315;GFI1B:0.66575009203;TEAD1:0.661584969063;PAX5:0.651029506659;SRF:0.629692993847;POU2F1..3:0.602343862963;EVI1:0.586579194281;GATA4:0.57470011932;HMGA1,2:0.558899873957;GTF2I:0.548786224055;JUN:0.539017314309;RFX1:0.525622230665;TLX1..3_NFIC{dimer}:0.523815823442;ELK1,4_GABP{A,B1}:0.521341205981;MYBL2:0.488682934403;STAT1,3:0.487487099206;ALX1:0.452354573541;PATZ1:0.449889817807;KLF4:0.437778805306;HOX{A4,D4}:0.421472667301;TFAP4:0.383808091427;PAX1,9:0.3835340031;NKX2-2,8:0.344491467084;PRRX1,2:0.34013167103;PAX4:0.306472956005;IKZF2:0.297406531101;STAT5{A,B}:0.274878988707;LMO2:0.273010310086;HSF1,2:0.261537029359;VSX1,2:0.230967328384;IKZF1:0.201028039323;EBF1:0.196160920346;GZF1:0.193546123058;PRDM1:0.188269558223;NKX3-2:0.186326463965;CUX2:0.163090390621;ZBTB6:0.152090803113;RREB1:0.137674194485;AIRE:0.105635555054;EN1,2:0.0940311903161;PAX8:0.0935904438976;MED-1{core}:0.0649669895459;HOXA9_MEIS1:0.0594818189785;FOXP3:0.0501293500414;HMX1:0.0431850287674;NFIX:0.0307902410676;SOX5:0.0086614957741;NHLH1,2:0.00709764822797;T:0.00181452319722;TFCP2:0.00180137793481;AR:-0.0199348366403;TP53:-0.0225527862549;YY1:-0.0446741413003;MEF2{A,B,C,D}:-0.0498122251346;RXR{A,B,G}:-0.0507779931418;MYOD1:-0.0518041445698;ATF4:-0.0654523959585;HOX{A5,B5}:-0.0765871077521;CRX:-0.0785283572098;ALX4:-0.0816222377736;HNF4A_NR2F1,2:-0.102441081285;ESRRA:-0.103855680156;TBP:-0.10809980417;CREB1:-0.109125158262;FOXN1:-0.11112174778;FOXM1:-0.112436533723;FOXD3:-0.120612458615;NR1H4:-0.128793001316;TEF:-0.132217877431;ZBTB16:-0.140942264555;HNF1A:-0.143843151846;STAT2,4,6:-0.15764318022;NFATC1..3:-0.164877766267;ZNF148:-0.1649357868;PAX3,7:-0.173142069006;NANOG{mouse}:-0.175158772416;FOS_FOS{B,L1}_JUN{B,D}:-0.181013617328;NFE2L2:-0.181774509046;MYFfamily:-0.219247318455;BACH2:-0.223015051281;ARID5B:-0.252654724197;ZNF423:-0.282338126665;REST:-0.282932579154;TGIF1:-0.290335088041;NKX3-1:-0.292990989427;MTF1:-0.294487201595;XBP1:-0.303401265015;FOXL1:-0.317628690823;DBP:-0.323076842767;HOX{A6,A7,B6,B7}:-0.326310675965;NFKB1_REL_RELA:-0.332550553736;TBX4,5:-0.364708039219;RUNX1..3:-0.379146231221;FOSL2:-0.379531823513;FOXA2:-0.391856546629;AHR_ARNT_ARNT2:-0.392283238311;EP300:-0.393349189808;RFX2..5_RFXANK_RFXAP:-0.404363021492;NFE2L1:-0.425637679609;SMAD1..7,9:-0.460052269328;NFE2:-0.469067529099;ATF2:-0.471599229955;ADNP_IRX_SIX_ZHX:-0.481326529678;POU6F1:-0.543225652401;BPTF:-0.550871673695;SNAI1..3:-0.555776843621;SPIB:-0.585927293202;MAFB:-0.588665439247;IRF7:-0.593894455575;IRF1,2:-0.628389881532;DMAP1_NCOR{1,2}_SMARC:-0.641822501892;NFIL3:-0.65112311264;SPI1:-0.651718441316;GATA6:-0.666858837415;HBP1_HMGB_SSRP1_UBTF:-0.6705653479;RXRA_VDR{dimer}:-0.703338881927;ELF1,2,4:-0.722076462141;HAND1,2:-0.725935124365;HES1:-0.745086168057;NR5A1,2:-0.747475175543;HLF:-0.747896832386;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.752159449709;SPZ1:-0.769058055706;ESR1:-0.800049370076;ZEB1:-0.813434014151;CEBPA,B_DDIT3:-0.817749076063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878466975264;ATF5_CREB3:-0.882855142312;GLI1..3:-0.88598908223;PDX1:-0.921570039909;FOXO1,3,4:-0.922798090032;FOX{D1,D2}:-0.935454872596;ETS1,2:-0.93855449384;TAL1_TCF{3,4,12}:-0.938812733952;PPARG:-1.01115875523;SREBF1,2:-1.04612825745;FOX{F1,F2,J1}:-1.06781316629;RORA:-1.06820066626;PAX2:-1.07171298273;bHLH_family:-1.20830329134;ATF6:-1.22611744819;FOXQ1:-1.24041141445;HIF1A:-1.25011310166;ZNF238:-1.36329755358;FOX{I1,J2}:-1.50534604962;TLX2:-1.58850134722
|top_motifs=TFDP1:2.42117043707;GFI1:2.41633997969;OCT4_SOX2{dimer}:2.17714134858;NFY{A,B,C}:1.81518293591;E2F1..5:1.60906684864;XCPE1{core}:1.57435924212;ZIC1..3:1.56953695364;RBPJ:1.5053410036;SOX2:1.49417885796;SOX17:1.47345835292;SOX{8,9,10}:1.40608217929;POU1F1:1.31712864832;ZNF384:1.29549730554;NKX2-3_NKX2-5:1.29398603839;GTF2A1,2:1.28849779428;NKX2-1,4:1.25659737485;PBX1:1.11777427611;MTE{core}:1.09847243876;POU5F1:1.09217525413;MZF1:1.08774246255;PAX6:1.08768414195;LEF1_TCF7_TCF7L1,2:1.08681508918;TFAP2B:1.0796190597;LHX3,4:1.06856362418;GCM1,2:1.06522230956;NKX6-1,2:1.06100077082;BREu{core}:1.00029651818;TOPORS:0.966044642325;SP1:0.949289055438;HIC1:0.949077346554;CDC5L:0.941995436627;EGR1..3:0.923000698265;NR6A1:0.913381925603;ZFP161:0.860868733549;NANOG:0.85206592588;MYB:0.830383271693;NR3C1:0.821325762063;POU3F1..4:0.812814592717;MAZ:0.802444413856;PITX1..3:0.798801578398;ZNF143:0.787569051229;TFAP2{A,C}:0.771443984514;CDX1,2,4:0.769714373061;FOXP1:0.762225874232;NRF1:0.719153186753;ONECUT1,2:0.686635316807;UFEwm:0.669942076315;GFI1B:0.66575009203;TEAD1:0.661584969063;PAX5:0.651029506659;SRF:0.629692993847;POU2F1..3:0.602343862963;EVI1:0.586579194281;GATA4:0.57470011932;HMGA1,2:0.558899873957;GTF2I:0.548786224055;JUN:0.539017314309;RFX1:0.525622230665;TLX1..3_NFIC{dimer}:0.523815823442;ELK1,4_GABP{A,B1}:0.521341205981;MYBL2:0.488682934403;STAT1,3:0.487487099206;ALX1:0.452354573541;PATZ1:0.449889817807;KLF4:0.437778805306;HOX{A4,D4}:0.421472667301;TFAP4:0.383808091427;PAX1,9:0.3835340031;NKX2-2,8:0.344491467084;PRRX1,2:0.34013167103;PAX4:0.306472956005;IKZF2:0.297406531101;STAT5{A,B}:0.274878988707;LMO2:0.273010310086;HSF1,2:0.261537029359;VSX1,2:0.230967328384;IKZF1:0.201028039323;EBF1:0.196160920346;GZF1:0.193546123058;PRDM1:0.188269558223;NKX3-2:0.186326463965;CUX2:0.163090390621;ZBTB6:0.152090803113;RREB1:0.137674194485;AIRE:0.105635555054;EN1,2:0.0940311903161;PAX8:0.0935904438976;MED-1{core}:0.0649669895459;HOXA9_MEIS1:0.0594818189785;FOXP3:0.0501293500414;HMX1:0.0431850287674;NFIX:0.0307902410676;SOX5:0.0086614957741;NHLH1,2:0.00709764822797;T:0.00181452319722;TFCP2:0.00180137793481;AR:-0.0199348366403;TP53:-0.0225527862549;YY1:-0.0446741413003;MEF2{A,B,C,D}:-0.0498122251346;RXR{A,B,G}:-0.0507779931418;MYOD1:-0.0518041445698;ATF4:-0.0654523959585;HOX{A5,B5}:-0.0765871077521;CRX:-0.0785283572098;ALX4:-0.0816222377736;HNF4A_NR2F1,2:-0.102441081285;ESRRA:-0.103855680156;TBP:-0.10809980417;CREB1:-0.109125158262;FOXN1:-0.11112174778;FOXM1:-0.112436533723;FOXD3:-0.120612458615;NR1H4:-0.128793001316;TEF:-0.132217877431;ZBTB16:-0.140942264555;HNF1A:-0.143843151846;STAT2,4,6:-0.15764318022;NFATC1..3:-0.164877766267;ZNF148:-0.1649357868;PAX3,7:-0.173142069006;NANOG{mouse}:-0.175158772416;FOS_FOS{B,L1}_JUN{B,D}:-0.181013617328;NFE2L2:-0.181774509046;MYFfamily:-0.219247318455;BACH2:-0.223015051281;ARID5B:-0.252654724197;ZNF423:-0.282338126665;REST:-0.282932579154;TGIF1:-0.290335088041;NKX3-1:-0.292990989427;MTF1:-0.294487201595;XBP1:-0.303401265015;FOXL1:-0.317628690823;DBP:-0.323076842767;HOX{A6,A7,B6,B7}:-0.326310675965;NFKB1_REL_RELA:-0.332550553736;TBX4,5:-0.364708039219;RUNX1..3:-0.379146231221;FOSL2:-0.379531823513;FOXA2:-0.391856546629;AHR_ARNT_ARNT2:-0.392283238311;EP300:-0.393349189808;RFX2..5_RFXANK_RFXAP:-0.404363021492;NFE2L1:-0.425637679609;SMAD1..7,9:-0.460052269328;NFE2:-0.469067529099;ATF2:-0.471599229955;ADNP_IRX_SIX_ZHX:-0.481326529678;POU6F1:-0.543225652401;BPTF:-0.550871673695;SNAI1..3:-0.555776843621;SPIB:-0.585927293202;MAFB:-0.588665439247;IRF7:-0.593894455575;IRF1,2:-0.628389881532;DMAP1_NCOR{1,2}_SMARC:-0.641822501892;NFIL3:-0.65112311264;SPI1:-0.651718441316;GATA6:-0.666858837415;HBP1_HMGB_SSRP1_UBTF:-0.6705653479;RXRA_VDR{dimer}:-0.703338881927;ELF1,2,4:-0.722076462141;HAND1,2:-0.725935124365;HES1:-0.745086168057;NR5A1,2:-0.747475175543;HLF:-0.747896832386;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.752159449709;SPZ1:-0.769058055706;ESR1:-0.800049370076;ZEB1:-0.813434014151;CEBPA,B_DDIT3:-0.817749076063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878466975264;ATF5_CREB3:-0.882855142312;GLI1..3:-0.88598908223;PDX1:-0.921570039909;FOXO1,3,4:-0.922798090032;FOX{D1,D2}:-0.935454872596;ETS1,2:-0.93855449384;TAL1_TCF{3,4,12}:-0.938812733952;PPARG:-1.01115875523;SREBF1,2:-1.04612825745;FOX{F1,F2,J1}:-1.06781316629;RORA:-1.06820066626;PAX2:-1.07171298273;bHLH_family:-1.20830329134;ATF6:-1.22611744819;FOXQ1:-1.24041141445;HIF1A:-1.25011310166;ZNF238:-1.36329755358;FOX{I1,J2}:-1.50534604962;TLX2:-1.58850134722
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11392-118C6;search_select_hide=table117:FF:11392-118C6
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Astrocyte - cerebral cortex, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12005
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebral cortex
dev stagefetus
sexunknown
agefetal
cell typeastrocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3641
catalog numberSC1805
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005736
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12005 CAGE DRX008117 DRR008989
Accession ID Hg19

Library idBAMCTSS
CNhs12005 DRZ000414 DRZ001799
Accession ID Hg38

Library idBAMCTSS
CNhs12005 DRZ011764 DRZ013149
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005736
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GTGAAA sRNA-Seq DRX037104 DRR041470
Accession ID Hg19

Library idBAMCTSS
SRhi10007.GTGAAA DRZ007112


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.015
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.63
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.121
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0326
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0514
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.045
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0973
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0835
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.696
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0453
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0514
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0514
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.607
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.441
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0514
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.212
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0514
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.18
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.353
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.177
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.252
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12005

Jaspar motifP-value
MA0002.24.55744e-4
MA0003.10.0869
MA0004.10.145
MA0006.10.696
MA0007.10.392
MA0009.10.177
MA0014.10.584
MA0017.10.00221
MA0018.20.441
MA0019.10.919
MA0024.12.85241e-6
MA0025.10.485
MA0027.10.428
MA0028.10.674
MA0029.10.714
MA0030.10.081
MA0031.10.0133
MA0035.20.0644
MA0038.12.43518e-6
MA0039.20.922
MA0040.10.0438
MA0041.10.281
MA0042.10.127
MA0043.10.842
MA0046.10.996
MA0047.28.17095e-4
MA0048.10.255
MA0050.10.00715
MA0051.10.0264
MA0052.10.517
MA0055.10.303
MA0057.10.482
MA0058.10.0771
MA0059.10.0642
MA0060.11.36246e-14
MA0061.10.0182
MA0062.20.384
MA0065.20.00231
MA0066.10.0691
MA0067.10.287
MA0068.10.00102
MA0069.10.973
MA0070.10.0184
MA0071.10.25
MA0072.10.366
MA0073.10.846
MA0074.10.486
MA0076.10.569
MA0077.10.0377
MA0078.10.709
MA0079.20.701
MA0080.22.39032e-14
MA0081.10.0344
MA0083.10.18
MA0084.10.438
MA0087.10.625
MA0088.10.452
MA0090.10.133
MA0091.10.0235
MA0092.10.485
MA0093.10.16
MA0099.21.90627e-7
MA0100.10.275
MA0101.10.196
MA0102.20.00572
MA0103.10.0428
MA0104.20.187
MA0105.12.72059e-5
MA0106.10.148
MA0107.10.0851
MA0108.20.0104
MA0111.10.465
MA0112.21.06548e-4
MA0113.10.21
MA0114.10.0259
MA0115.10.373
MA0116.13.41034e-4
MA0117.10.784
MA0119.10.311
MA0122.10.84
MA0124.10.546
MA0125.10.0137
MA0131.10.508
MA0135.10.483
MA0136.11.63296e-15
MA0137.20.372
MA0138.20.187
MA0139.10.0656
MA0140.10.0565
MA0141.10.0429
MA0142.10.0302
MA0143.10.0894
MA0144.10.0739
MA0145.10.244
MA0146.10.0847
MA0147.10.192
MA0148.10.00666
MA0149.10.0359
MA0150.19.02708e-4
MA0152.10.2
MA0153.10.781
MA0154.10.00295
MA0155.10.669
MA0156.11.21391e-5
MA0157.10.0168
MA0159.10.00894
MA0160.10.029
MA0162.10.507
MA0163.14.33028e-8
MA0164.10.604
MA0258.10.00621
MA0259.10.475



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12005

Novel motifP-value
10.0608
100.0898
1000.899
1010.525
1020.64
1030.0985
1040.871
1050.256
1060.0478
1070.592
1080.5
1090.0278
110.0613
1100.162
1110.0405
1120.022
1130.439
1140.00213
1150.34
1160.893
1170.102
1180.375
1190.179
120.518
1200.977
1210.775
1220.325
1230.213
1240.345
1250.913
1260.179
1270.0804
1280.263
1290.246
130.277
1300.281
1310.449
1320.957
1330.981
1340.861
1350.242
1360.854
1370.158
1380.0612
1390.0019
140.765
1400.101
1410.249
1420.693
1430.00338
1440.807
1450.818
1460.9
1470.907
1480.0144
1490.12
150.0794
1500.569
1510.325
1520.172
1530.279
1540.95
1550.295
1560.519
1570.358
1580.109
1590.743
160.233
1600.214
1610.601
1620.936
1630.785
1640.0596
1650.142
1660.287
1670.623
1680.503
1690.00924
170.129
180.113
190.412
20.528
200.844
210.619
220.244
230.0714
240.352
250.463
260.369
270.188
280.761
290.133
30.0542
300.89
310.726
320.263
330.52
340.671
350.159
360.0401
370.0506
380.188
390.993
40.648
400.193
410.159
420.186
430.0858
440.343
450.538
460.0472
470.124
480.197
490.0966
50.122
500.781
510.312
520.524
530.6
540.338
550.215
560.458
570.474
580.0621
590.133
60.845
600.0629
610.333
620.0422
630.187
640.291
650.106
660.549
670.774
680.653
690.795
70.282
700.00651
710.0521
720.145
730.116
740.218
750.0463
760.344
770.149
780.211
790.546
80.273
800.24
810.44
820.0169
830.673
840.537
850.0289
860.181
870.94
880.711
890.152
90.285
900.338
910.714
920.0371
930.0769
940.0235
950.125
960.206
970.633
980.206
990.668



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12005


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002605 (astrocyte of the cerebral cortex)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000194 (human astrocyte of the cerebral cortex sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

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