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{{f5samples
{{f5samples
|id=FF:11392-118C6
|DRA_sample_Accession=CAGE@SAMD00005736
|name=Astrocyte - cerebral cortex, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005736
|sample_id=11392
|accession_numbers=CAGE;DRX008117;DRR008989;DRZ000414;DRZ001799;DRZ011764;DRZ013149
|rna_tube_id=118C6
|accession_numbers_RNASeq=sRNA-Seq;DRX037104;DRR041470;DRZ007112
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
|rna_position=C6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=3641
|rna_catalog_number=SC1805
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=cerebral cortex
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=astrocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.456
|sample_note=
|profile_hcage=CNhs12005,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10007,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000030,CL:0000055,CL:0000095,CL:0000123,CL:0000125,CL:0000126,CL:0000127,CL:0000128,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000243,CL:0000255,CL:0000333,CL:0000339,CL:0000548,CL:0002319,CL:0002321,CL:0002371,CL:0002453,CL:0002605
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0000956,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001869,UBERON:0001890,UBERON:0001893,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000194
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr3:181429704..181429722,+!p1@SOX2!2.07!116.13!SOX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.99!97.67!POU3F3;;chrX:25034067..25034088,-!p1@ARX!1.99!97.55!ARX;;chr14:33403881..33403924,+!p1@NPAS3!1.97!92.02!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.92!82.73!LHX2;;chr4:57547454..57547469,-!p1@HOPX!1.92!82.48!HOPX;;chr14:29235961..29236008,+!p1@FOXG1!1.91!79.59!FOXG1;;chr3:181429741..181429767,+!p2@SOX2!1.62!40.93!SOX2;;chr9:126773880..126773895,+!p2@LHX2!1.58!37.04!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.56!35.65!FOXG1;;chr2:5832508..5832524,+!p1@SOX11!1.56!35.15!SOX11;;chrX:139587228..139587234,-!p1@SOX3!1.53!33.27!SOX3;;chr6:45296048..45296082,+!p1@RUNX2!1.45!30.88!RUNX2;;chr19:13134772..13134822,+!p2@NFIX!1.44!38.54!NFIX;;chr9:126774058..126774081,+!p3@LHX2!1.43!25.61!LHX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.39!23.48!POU3F3;;chr2:239148671..239148686,-!p1@HES6!1.38!81.73!HES6;;chr11:31832862..31832884,-!p2@PAX6!1.38!23.10!PAX6;;chr13:72441315..72441454,-!p1@DACH1!1.36!43.44!DACH1;;chr1:2985760..2985774,+!p1@PRDM16!1.36!21.72!PRDM16;;chr16:51185172..51185197,-!p1@SALL1!1.34!20.71!SALL1;;chr11:31839488..31839515,-!p3@PAX6!1.32!20.09!PAX6;;chr14:33403648..33403710,+!p3@NPAS3!1.30!18.96!NPAS3;;chr7:42276787..42276815,-!p1@GLI3!1.29!49.21!GLI3;;chr20:30433396..30433414,-!p1@FOXS1!1.29!18.58!FOXS1;;chrX:82763292..82763317,+!p1@POU3F4!1.29!18.33!POU3F4;;chr7:100065686..100065701,-!p2@TSC22D4!1.27!17.58!TSC22D4;;chr6:19837592..19837621,+!p1@ID4!1.25!99.93!ID4;;chr14:29236269..29236285,+!p3@FOXG1!1.25!16.82!FOXG1;;chr20:55204351..55204377,+!p1@TFAP2C!1.24!20.84!TFAP2C;;chr11:31832807..31832823,-!p4@PAX6!1.24!16.45!PAX6;;chr11:31832658..31832681,-!p1@PAX6!1.24!16.32!PAX6;;chr2:63277948..63277974,+!p1@OTX1!1.23!15.82!OTX1;;chr15:80696703..80696754,+!p1@ARNT2!1.22!20.59!ARNT2;;chr13:95364784..95364806,-!p1@SOX21!1.18!14.06!SOX21;;chr13:72441074..72441172,-!p2@DACH1!1.16!13.43!DACH1;;chr9:4300050..4300118,-!p1@GLIS3!1.15!84.24!GLIS3;;chr14:73360799..73360817,-!p1@DPF3!1.15!45.45!DPF3;;chr18:53068911..53068935,-!p4@TCF4!1.15!14.94!TCF4;;chr1:50889103..50889145,-!p1@DMRTA2!1.14!12.81!DMRTA2;;chr4:57547751..57547764,-!p6@HOPX!1.14!12.81!HOPX;;chr10:119302232..119302265,+!p1@EMX2!1.11!11.93!EMX2;;chr7:42276822..42276895,-!p2@GLI3!1.10!35.03!GLI3;;chr6:99282438..99282457,+!p2@POU3F2!1.10!11.55!POU3F2;;chr16:86600426..86600441,+!p1@FOXC2!1.09!27.87!FOXC2;;chr6:108487289..108487302,+!p1@NR2E1!1.09!11.30!NR2E1;;chr5:176738887..176738934,-!p1@MXD3!1.07!72.44!MXD3;;chr12:24102576..24102623,-!p2@SOX5!1.07!10.80!SOX5;;chr6:99282475..99282501,+!p1@POU3F2!1.07!10.67!POU3F2;;chr4:57522598..57522664,-!p3@HOPX!1.05!10.29!HOPX;;chr14:33403860..33403874,+!p5@NPAS3!1.04!10.04!NPAS3;;chr16:51185318..51185348,-!p2@SALL1!1.04!10.04!SALL1;;chr5:92918919..92918942,+!p1@NR2F1!1.03!44.19!NR2F1;;chr15:37392724..37392757,-!p1@MEIS2!1.02!43.81!MEIS2;;chr15:37392094..37392116,-!p6@MEIS2!1.02!11.80!MEIS2;;chrY:21906594..21906622,-!p1@KDM5D!1.01!9.16!KDM5D;;chr17:70117153..70117174,+!p1@SOX9!0.99!92.90!SOX9;;chr19:38720294..38720348,-!p1@DPF1!0.99!10.92!DPF1;;chr9:14314131..14314147,-!p2@NFIB!0.98!49.21!NFIB;;chr20:55205825..55205847,+!p2@TFAP2C!0.96!8.03!TFAP2C;;chr3:114173654..114173696,-!p12@ZBTB20!0.94!7.78!ZBTB20;;chr2:5832493..5832507,+!p2@SOX11!0.94!7.66!SOX11;;chr16:52581025..52581072,-!p1@TOX3!0.93!7.53!TOX3;;chr8:86089417..86089440,+!p2@E2F5!0.92!14.81!E2F5;;chr12:80084279..80084293,-!p8@PAWR!0.92!12.55!PAWR;;chr14:33408072..33408114,+!p2@NPAS3!0.92!8.66!NPAS3;;chr19:13135582..13135600,+!p3@NFIX!0.92!7.41!NFIX;;chr6:85474299..85474324,-!p1@TBX18!0.91!13.06!TBX18;;chr6:108487220..108487236,+!p2@NR2E1!0.91!7.16!NR2E1;;chr4:299227..299272,-!p1@ZNF732!0.91!7.16!ZNF732;;chr8:80679993..80680011,-!p1@HEY1!0.90!10.29!HEY1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.90!7.03!ZSCAN1;;chr8:77593474..77593612,+!p1@ZFHX4!0.88!29.13!ZFHX4;;chr9:126774091..126774098,+!p4@LHX2!0.88!6.65!LHX2;;chr4:57547820..57547829,-!p8@HOPX!0.88!6.65!HOPX;;chr13:100623375..100623425,-!p1@ZIC5!0.88!6.65!ZIC5;;chr1:40105299..40105326,-!p1@HEYL!0.87!6.40!HEYL;;chr7:42192092..42192108,-!p13@GLI3!0.86!6.28!GLI3;;chr20:42295713..42295738,+!p2@MYBL2!0.85!38.29!MYBL2;;chr1:170633348..170633399,+!p2@PRRX1!0.85!8.54!PRRX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.85!6.03!PEG3;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.81!E2F1;;chr8:67525443..67525459,-!p2@MYBL1!0.84!9.16!MYBL1;;chr18:42260840..42260860,+!p2@SETBP1!0.84!5.90!SETBP1;;chr14:33403779..33403793,+!p6@NPAS3!0.84!5.90!NPAS3;;chr2:16080659..16080685,+!p1@MYCN!0.84!5.90!MYCN;;chr12:24715376..24715432,-!p1@SOX5!0.82!7.28!SOX5;;chr4:57522166..57522260,-!p2@HOPX!0.82!6.53!HOPX;;chr19:22817119..22817145,+!p1@ZNF492!0.81!9.54!ZNF492;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.42!MLLT11;;chrX:84499081..84499115,+!p2@ZNF711!0.81!8.29!ZNF711;;chr1:23696348..23696363,-!p4@ZNF436!0.81!6.15!ZNF436;;chr16:30406423..30406447,+!p4@ZNF48!0.81!5.52!ZNF48;;ch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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002605;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
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|fonse_cell_line_closure=
Line 66: Line 43:
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|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg38.nobarcode.ctss.bed.gz
|id=FF:11392-118C6
|is_a=EFO:0002091;;FF:0000194
|is_obsolete=
|library_id=CNhs12005
|library_id_phase_based=2:CNhs12005
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11392
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTGAAA.11392
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11392
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTGAAA.11392
|name=Astrocyte - cerebral cortex, donor3
|namespace=FANTOM5
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|rna_box=118
|rna_catalog_number=SC1805
|rna_concentration=0.456
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=3641
|rna_od260/230=
|rna_od260/280=
|rna_position=C6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118C6
|rna_weight_ug=10
|rnaseq_library_id=SRhi10007.GTGAAA
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=astrocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.35102844785834e-272!GO:0043226;organelle;2.1739219596263e-221!GO:0043229;intracellular organelle;4.78162983033531e-221!GO:0043231;intracellular membrane-bound organelle;2.53156884207199e-211!GO:0043227;membrane-bound organelle;3.45962234854292e-211!GO:0005737;cytoplasm;2.28933413169026e-187!GO:0044422;organelle part;6.24456034903633e-157!GO:0044446;intracellular organelle part;2.16094074101074e-155!GO:0044444;cytoplasmic part;1.65590574753624e-116!GO:0032991;macromolecular complex;2.98399372825933e-109!GO:0005634;nucleus;5.94934803687011e-101!GO:0044238;primary metabolic process;2.16236726326939e-89!GO:0044237;cellular metabolic process;1.23686396962772e-88!GO:0005515;protein binding;1.05903844263115e-87!GO:0030529;ribonucleoprotein complex;1.31305538056191e-85!GO:0043170;macromolecule metabolic process;2.764821290301e-84!GO:0044428;nuclear part;4.06883801518645e-77!GO:0043233;organelle lumen;2.07685888622087e-70!GO:0031974;membrane-enclosed lumen;2.07685888622087e-70!GO:0003723;RNA binding;3.56823035115163e-70!GO:0016043;cellular component organization and biogenesis;9.78783677700264e-68!GO:0005739;mitochondrion;5.26536711525104e-60!GO:0043234;protein complex;1.39264094180971e-57!GO:0043283;biopolymer metabolic process;4.40270169277456e-54!GO:0043228;non-membrane-bound organelle;4.30048255294519e-50!GO:0043232;intracellular non-membrane-bound organelle;4.30048255294519e-50!GO:0005840;ribosome;5.68054052804096e-50!GO:0006996;organelle organization and biogenesis;5.77179920175112e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.32671466921482e-47!GO:0031090;organelle membrane;2.38385472073807e-46!GO:0006396;RNA processing;3.43712389074632e-46!GO:0006412;translation;2.18143660574572e-44!GO:0003735;structural constituent of ribosome;1.00721148423981e-43!GO:0010467;gene expression;1.41959678308281e-43!GO:0031981;nuclear lumen;4.84740292705222e-43!GO:0019538;protein metabolic process;1.38317054971478e-42!GO:0033036;macromolecule localization;2.05816768594802e-42!GO:0031967;organelle envelope;3.2065715721491e-42!GO:0044429;mitochondrial part;3.59728199800083e-42!GO:0006259;DNA metabolic process;4.82445096087973e-42!GO:0031975;envelope;5.83033046372631e-42!GO:0015031;protein transport;7.89506470015983e-42!GO:0016071;mRNA metabolic process;2.54985866087781e-39!GO:0046907;intracellular transport;1.22192737470005e-38!GO:0008104;protein localization;1.4732959462148e-38!GO:0045184;establishment of protein localization;6.18347765501189e-38!GO:0007049;cell cycle;1.51131514206076e-37!GO:0044260;cellular macromolecule metabolic process;1.84321409756817e-37!GO:0044267;cellular protein metabolic process;2.90679627682008e-37!GO:0033279;ribosomal subunit;8.27378069558414e-37!GO:0008380;RNA splicing;2.73132578099891e-36!GO:0065003;macromolecular complex assembly;7.81283986972229e-36!GO:0009058;biosynthetic process;1.09866628647409e-35!GO:0044249;cellular biosynthetic process;4.50129227285426e-34!GO:0006397;mRNA processing;1.04684586588107e-33!GO:0009059;macromolecule biosynthetic process;2.29310421542135e-33!GO:0022607;cellular component assembly;2.2265661436544e-32!GO:0005829;cytosol;2.21882355105476e-31!GO:0003676;nucleic acid binding;4.23086701173528e-30!GO:0000278;mitotic cell cycle;8.1974303608784e-30!GO:0006886;intracellular protein transport;2.12798353015949e-29!GO:0022402;cell cycle process;7.37460561292288e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.73337318503262e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.07417794975115e-27!GO:0005740;mitochondrial envelope;1.2596441253544e-27!GO:0019866;organelle inner membrane;2.07304719615744e-27!GO:0005654;nucleoplasm;2.49767238298328e-27!GO:0005694;chromosome;6.216241778072e-27!GO:0000166;nucleotide binding;1.39263496645028e-26!GO:0031966;mitochondrial membrane;3.95266237652285e-26!GO:0005681;spliceosome;1.97206289310073e-25!GO:0044427;chromosomal part;2.99281716205533e-25!GO:0005743;mitochondrial inner membrane;4.62780634212931e-25!GO:0051649;establishment of cellular localization;8.27965535638785e-25!GO:0022403;cell cycle phase;8.43448758709067e-25!GO:0051641;cellular localization;1.55662639709791e-24!GO:0000087;M phase of mitotic cell cycle;3.57415959565989e-24!GO:0007067;mitosis;7.58502396482349e-24!GO:0051301;cell division;3.24113930637275e-23!GO:0044451;nucleoplasm part;4.94677928891221e-22!GO:0006974;response to DNA damage stimulus;8.49844622278778e-22!GO:0051276;chromosome organization and biogenesis;1.91676127319808e-21!GO:0044445;cytosolic part;3.72311565539518e-21!GO:0016462;pyrophosphatase activity;4.37826566253508e-21!GO:0016070;RNA metabolic process;6.05359432972269e-21!GO:0006119;oxidative phosphorylation;6.11791740916276e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.19093268747537e-21!GO:0000279;M phase;6.67122745780493e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.0007409296657e-20!GO:0017111;nucleoside-triphosphatase activity;1.32351266722799e-20!GO:0012505;endomembrane system;1.64844170417145e-19!GO:0044455;mitochondrial membrane part;2.97886651872799e-19!GO:0015934;large ribosomal subunit;5.37074693167819e-19!GO:0006281;DNA repair;5.85254403097368e-19!GO:0015935;small ribosomal subunit;7.43123822171634e-19!GO:0006260;DNA replication;1.49888230292287e-18!GO:0032553;ribonucleotide binding;2.37636422065371e-18!GO:0032555;purine ribonucleotide binding;2.37636422065371e-18!GO:0006457;protein folding;4.91474976243878e-18!GO:0031980;mitochondrial lumen;6.87930878335739e-18!GO:0005759;mitochondrial matrix;6.87930878335739e-18!GO:0006512;ubiquitin cycle;9.7668693766557e-18!GO:0017076;purine nucleotide binding;1.36410409300716e-17!GO:0016874;ligase activity;1.81340767527496e-17!GO:0022618;protein-RNA complex assembly;1.98514159936522e-17!GO:0005746;mitochondrial respiratory chain;1.69879958939571e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;2.47524426098923e-16!GO:0005524;ATP binding;2.51122948479642e-16!GO:0048770;pigment granule;3.02136965176959e-16!GO:0042470;melanosome;3.02136965176959e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.51012623518689e-16!GO:0006605;protein targeting;7.70577709549798e-16!GO:0032559;adenyl ribonucleotide binding;8.35346418328792e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.23425818318513e-15!GO:0006323;DNA packaging;1.37456949281607e-15!GO:0019941;modification-dependent protein catabolic process;1.82113580080652e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.82113580080652e-15!GO:0005635;nuclear envelope;1.96597294794066e-15!GO:0015630;microtubule cytoskeleton;1.972835209807e-15!GO:0031965;nuclear membrane;2.0674057068676e-15!GO:0044265;cellular macromolecule catabolic process;2.11173083970654e-15!GO:0005730;nucleolus;2.42261174048165e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.64314521842683e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.15087255846499e-15!GO:0005794;Golgi apparatus;3.50103545639358e-15!GO:0044257;cellular protein catabolic process;4.11925135152383e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.13279893805611e-15!GO:0003954;NADH dehydrogenase activity;4.13279893805611e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.13279893805611e-15!GO:0005783;endoplasmic reticulum;5.5078549088694e-15!GO:0009719;response to endogenous stimulus;5.96363746768532e-15!GO:0008134;transcription factor binding;6.16483671902741e-15!GO:0030554;adenyl nucleotide binding;6.35208304299938e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.2785960714039e-14!GO:0044453;nuclear membrane part;1.7534426172344e-14!GO:0008135;translation factor activity, nucleic acid binding;2.17792125456549e-14!GO:0043285;biopolymer catabolic process;8.17356147231807e-14!GO:0000785;chromatin;1.47132698181803e-13!GO:0005761;mitochondrial ribosome;1.62750151521347e-13!GO:0000313;organellar ribosome;1.62750151521347e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.21357489385131e-13!GO:0043412;biopolymer modification;2.64035993820765e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.79538984786747e-13!GO:0000375;RNA splicing, via transesterification reactions;2.79538984786747e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.79538984786747e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.14182137786769e-13!GO:0045271;respiratory chain complex I;4.14182137786769e-13!GO:0005747;mitochondrial respiratory chain complex I;4.14182137786769e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.4077950048367e-13!GO:0042773;ATP synthesis coupled electron transport;4.4077950048367e-13!GO:0044432;endoplasmic reticulum part;4.89456084056277e-13!GO:0030163;protein catabolic process;5.45718380802275e-13!GO:0009057;macromolecule catabolic process;5.48893748813365e-13!GO:0051726;regulation of cell cycle;5.58807412748326e-13!GO:0000074;regulation of progression through cell cycle;5.88305855416564e-13!GO:0051082;unfolded protein binding;7.23162170715999e-13!GO:0048193;Golgi vesicle transport;7.56214731951123e-13!GO:0065004;protein-DNA complex assembly;1.10039514328131e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.26107997004984e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.59539159167641e-12!GO:0051186;cofactor metabolic process;1.97648510068527e-12!GO:0006333;chromatin assembly or disassembly;2.03718483481022e-12!GO:0005643;nuclear pore;2.21772737064783e-12!GO:0006464;protein modification process;4.54320114137951e-12!GO:0044248;cellular catabolic process;4.61765485523477e-12!GO:0006913;nucleocytoplasmic transport;5.40162772186984e-12!GO:0051169;nuclear transport;1.61741891846188e-11!GO:0050794;regulation of cellular process;1.73338235445322e-11!GO:0003743;translation initiation factor activity;2.07865991853904e-11!GO:0006413;translational initiation;4.0457162970023e-11!GO:0042254;ribosome biogenesis and assembly;4.14918829053605e-11!GO:0016604;nuclear body;5.58923829447663e-11!GO:0043687;post-translational protein modification;7.08435593660528e-11!GO:0006334;nucleosome assembly;8.2867964698051e-11!GO:0007010;cytoskeleton organization and biogenesis;9.15398701456206e-11!GO:0006403;RNA localization;9.36770205898824e-11!GO:0042623;ATPase activity, coupled;1.04345791689895e-10!GO:0016887;ATPase activity;1.09174158275862e-10!GO:0000775;chromosome, pericentric region;1.28503843165212e-10!GO:0006732;coenzyme metabolic process;1.60354133857429e-10!GO:0050657;nucleic acid transport;2.00435300232989e-10!GO:0051236;establishment of RNA localization;2.00435300232989e-10!GO:0050658;RNA transport;2.00435300232989e-10!GO:0065002;intracellular protein transport across a membrane;2.40370440713326e-10!GO:0048523;negative regulation of cellular process;2.40901895665918e-10!GO:0016192;vesicle-mediated transport;2.66348104888291e-10!GO:0009055;electron carrier activity;3.41514757816507e-10!GO:0005819;spindle;3.64751600744801e-10!GO:0004386;helicase activity;5.11742857901476e-10!GO:0031497;chromatin assembly;6.00637885795982e-10!GO:0006446;regulation of translational initiation;6.24823077368997e-10!GO:0008639;small protein conjugating enzyme activity;6.26743623290672e-10!GO:0006461;protein complex assembly;9.54072369374425e-10!GO:0046930;pore complex;1.01560242267621e-09!GO:0004842;ubiquitin-protein ligase activity;1.30340534669711e-09!GO:0008565;protein transporter activity;1.70187017619475e-09!GO:0006366;transcription from RNA polymerase II promoter;1.7918513474426e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.56769876334994e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.89161310326982e-09!GO:0009259;ribonucleotide metabolic process;4.41668031610966e-09!GO:0019787;small conjugating protein ligase activity;4.60423896544267e-09!GO:0005789;endoplasmic reticulum membrane;5.06202246398174e-09!GO:0017038;protein import;5.2894030155519e-09!GO:0016607;nuclear speck;5.31800592362434e-09!GO:0005793;ER-Golgi intermediate compartment;5.89635631223216e-09!GO:0006163;purine nucleotide metabolic process;7.33079785002042e-09!GO:0003712;transcription cofactor activity;7.95939721589261e-09!GO:0048519;negative regulation of biological process;8.72793136869278e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.18520916006075e-08!GO:0051028;mRNA transport;1.23289770422128e-08!GO:0050789;regulation of biological process;1.35510851668354e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.64302188358282e-08!GO:0006399;tRNA metabolic process;1.78336558089027e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.85496501746918e-08!GO:0009060;aerobic respiration;2.40824020395111e-08!GO:0043566;structure-specific DNA binding;2.45762415843881e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.5980890133893e-08!GO:0003697;single-stranded DNA binding;2.99292895608072e-08!GO:0006164;purine nucleotide biosynthetic process;3.10594237061919e-08!GO:0006261;DNA-dependent DNA replication;3.70131127816519e-08!GO:0009150;purine ribonucleotide metabolic process;4.86795200926897e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.71920177416883e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.71920177416883e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.71920177416883e-08!GO:0051325;interphase;5.79706193388204e-08!GO:0051329;interphase of mitotic cell cycle;5.81287766005561e-08!GO:0009260;ribonucleotide biosynthetic process;5.84434813776673e-08!GO:0003924;GTPase activity;6.02785827740681e-08!GO:0045333;cellular respiration;6.32935031413946e-08!GO:0016881;acid-amino acid ligase activity;7.3455770539419e-08!GO:0008026;ATP-dependent helicase activity;7.69303253686054e-08!GO:0012501;programmed cell death;8.2259143683214e-08!GO:0005874;microtubule;1.01571844684634e-07!GO:0043038;amino acid activation;1.20932295854967e-07!GO:0006418;tRNA aminoacylation for protein translation;1.20932295854967e-07!GO:0043039;tRNA aminoacylation;1.20932295854967e-07!GO:0006915;apoptosis;1.35475128390437e-07!GO:0006364;rRNA processing;1.49676175427375e-07!GO:0031252;leading edge;1.57700370802861e-07!GO:0009141;nucleoside triphosphate metabolic process;1.68867318929658e-07!GO:0007051;spindle organization and biogenesis;1.82600711489654e-07!GO:0008092;cytoskeletal protein binding;1.82945129681615e-07!GO:0016568;chromatin modification;1.88566632501058e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.02421360067575e-07!GO:0016740;transferase activity;2.1140682263169e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.15138239331289e-07!GO:0015986;ATP synthesis coupled proton transport;2.53297731420619e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.53297731420619e-07!GO:0031324;negative regulation of cellular metabolic process;3.10496628511542e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.10593632393042e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.45399179027873e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.45399179027873e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.93630483732177e-07!GO:0005813;centrosome;3.93630483732177e-07!GO:0016072;rRNA metabolic process;4.3555596743056e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.39628667958252e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.39628667958252e-07!GO:0005667;transcription factor complex;5.21124609425161e-07!GO:0000075;cell cycle checkpoint;5.46868422805237e-07!GO:0007005;mitochondrion organization and biogenesis;5.56447432097608e-07!GO:0048475;coated membrane;6.05855431043585e-07!GO:0030117;membrane coat;6.05855431043585e-07!GO:0019829;cation-transporting ATPase activity;6.06575869255926e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.19799457719872e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.19799457719872e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.19799457719872e-07!GO:0006099;tricarboxylic acid cycle;8.01327978629008e-07!GO:0046356;acetyl-CoA catabolic process;8.01327978629008e-07!GO:0005815;microtubule organizing center;8.47509192913798e-07!GO:0044431;Golgi apparatus part;8.60491192750566e-07!GO:0009056;catabolic process;8.60491192750566e-07!GO:0008219;cell death;1.02523376523691e-06!GO:0016265;death;1.02523376523691e-06!GO:0043623;cellular protein complex assembly;1.02897638446987e-06!GO:0032446;protein modification by small protein conjugation;1.15509565961582e-06!GO:0030120;vesicle coat;1.31090940614734e-06!GO:0030662;coated vesicle membrane;1.31090940614734e-06!GO:0009892;negative regulation of metabolic process;1.32387625261267e-06!GO:0007017;microtubule-based process;1.61431802296086e-06!GO:0051188;cofactor biosynthetic process;1.63004020923115e-06!GO:0051170;nuclear import;1.71258823737633e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.7680610999039e-06!GO:0016567;protein ubiquitination;1.90369755711159e-06!GO:0006606;protein import into nucleus;2.27824813579954e-06!GO:0006793;phosphorus metabolic process;2.34775229899553e-06!GO:0006796;phosphate metabolic process;2.34775229899553e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.36960403430349e-06!GO:0046034;ATP metabolic process;2.42030704056648e-06!GO:0045259;proton-transporting ATP synthase complex;2.54155885686047e-06!GO:0006084;acetyl-CoA metabolic process;2.54165127834683e-06!GO:0008361;regulation of cell size;2.61221116662091e-06!GO:0016049;cell growth;2.64622138069256e-06!GO:0008094;DNA-dependent ATPase activity;3.14726420208767e-06!GO:0045786;negative regulation of progression through cell cycle;3.21247354354257e-06!GO:0000245;spliceosome assembly;3.23816851132056e-06!GO:0006754;ATP biosynthetic process;3.29552804038254e-06!GO:0006753;nucleoside phosphate metabolic process;3.29552804038254e-06!GO:0016310;phosphorylation;3.35352950171044e-06!GO:0005657;replication fork;3.38188062053175e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.46905152378442e-06!GO:0016779;nucleotidyltransferase activity;3.57174529606516e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.57174529606516e-06!GO:0006752;group transfer coenzyme metabolic process;3.89819507195508e-06!GO:0007059;chromosome segregation;5.5286989757719e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.77361830386532e-06!GO:0009109;coenzyme catabolic process;5.94025908505123e-06!GO:0019222;regulation of metabolic process;5.95932425071944e-06!GO:0000776;kinetochore;6.27192896537066e-06!GO:0005788;endoplasmic reticulum lumen;6.36326131568841e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.38313650427188e-06!GO:0051246;regulation of protein metabolic process;6.82991784582935e-06!GO:0000151;ubiquitin ligase complex;7.06964069609505e-06!GO:0009117;nucleotide metabolic process;7.5208536982523e-06!GO:0005768;endosome;8.52239432865474e-06!GO:0006613;cotranslational protein targeting to membrane;9.33322189961322e-06!GO:0000786;nucleosome;9.83990183262082e-06!GO:0051187;cofactor catabolic process;1.41729791585133e-05!GO:0005762;mitochondrial large ribosomal subunit;1.41729791585133e-05!GO:0000315;organellar large ribosomal subunit;1.41729791585133e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.65484812665973e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.82644226572112e-05!GO:0030029;actin filament-based process;2.11472963737893e-05!GO:0016126;sterol biosynthetic process;2.12982473609881e-05!GO:0043069;negative regulation of programmed cell death;2.12982473609881e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.2536567814723e-05!GO:0001558;regulation of cell growth;2.2536567814723e-05!GO:0016564;transcription repressor activity;2.4347158358765e-05!GO:0016481;negative regulation of transcription;2.43921035945484e-05!GO:0009108;coenzyme biosynthetic process;2.45979878307794e-05!GO:0031988;membrane-bound vesicle;2.82876984653375e-05!GO:0006916;anti-apoptosis;3.10077451221724e-05!GO:0004298;threonine endopeptidase activity;3.2121895266899e-05!GO:0043066;negative regulation of apoptosis;3.49964834054444e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.50676632909381e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.62304035698597e-05!GO:0051168;nuclear export;3.65398054978584e-05!GO:0003714;transcription corepressor activity;3.69845151743932e-05!GO:0005798;Golgi-associated vesicle;4.89366164817702e-05!GO:0000139;Golgi membrane;4.93717742000701e-05!GO:0016859;cis-trans isomerase activity;5.14998185272286e-05!GO:0005525;GTP binding;5.69884569582711e-05!GO:0007088;regulation of mitosis;5.69884569582711e-05!GO:0003899;DNA-directed RNA polymerase activity;6.03364848435379e-05!GO:0015631;tubulin binding;6.32411734686172e-05!GO:0007093;mitotic cell cycle checkpoint;6.38425952149352e-05!GO:0016853;isomerase activity;6.92231800262645e-05!GO:0048471;perinuclear region of cytoplasm;7.96777419520365e-05!GO:0051427;hormone receptor binding;8.08904464724443e-05!GO:0031982;vesicle;8.21927279274779e-05!GO:0003724;RNA helicase activity;8.9839089533299e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.05659385513015e-05!GO:0003682;chromatin binding;9.13536867011588e-05!GO:0008654;phospholipid biosynthetic process;9.29806488644956e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;9.70208256626926e-05!GO:0043067;regulation of programmed cell death;0.000104748881622983!GO:0006695;cholesterol biosynthetic process;0.000105157264612909!GO:0042981;regulation of apoptosis;0.000106899973932974!GO:0031410;cytoplasmic vesicle;0.000115285185285651!GO:0030867;rough endoplasmic reticulum membrane;0.000128399838238718!GO:0019899;enzyme binding;0.000159031070858908!GO:0006302;double-strand break repair;0.000160407689516776!GO:0035257;nuclear hormone receptor binding;0.000172196675892688!GO:0019843;rRNA binding;0.000173348599459755!GO:0003690;double-stranded DNA binding;0.000187025049743613!GO:0015980;energy derivation by oxidation of organic compounds;0.00018745876383224!GO:0005905;coated pit;0.000195354655237071!GO:0016363;nuclear matrix;0.000196762873279098!GO:0006310;DNA recombination;0.000213650031250191!GO:0000902;cell morphogenesis;0.000229878175623476!GO:0032989;cellular structure morphogenesis;0.000229878175623476!GO:0000059;protein import into nucleus, docking;0.000231566019541534!GO:0045454;cell redox homeostasis;0.000252377898697325!GO:0006612;protein targeting to membrane;0.000266868150712501!GO:0043021;ribonucleoprotein binding;0.000311135287771964!GO:0003684;damaged DNA binding;0.000320665122055645!GO:0005770;late endosome;0.000353949857440006!GO:0044440;endosomal part;0.000353949857440006!GO:0010008;endosome membrane;0.000353949857440006!GO:0001726;ruffle;0.000369934892716457!GO:0006626;protein targeting to mitochondrion;0.000376381923478352!GO:0005048;signal sequence binding;0.000383946844657631!GO:0007052;mitotic spindle organization and biogenesis;0.000392081169803843!GO:0032561;guanyl ribonucleotide binding;0.000418285038869661!GO:0019001;guanyl nucleotide binding;0.000418285038869661!GO:0008250;oligosaccharyl transferase complex;0.000423311273898021!GO:0065007;biological regulation;0.000434846058094584!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000454886544845262!GO:0040008;regulation of growth;0.000473146811967871!GO:0031323;regulation of cellular metabolic process;0.000473146811967871!GO:0042802;identical protein binding;0.000473758805609476!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000499983236202533!GO:0005885;Arp2/3 protein complex;0.000510402963932014!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00051876691707875!GO:0006414;translational elongation;0.000543144165694515!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000549637293930573!GO:0003729;mRNA binding;0.000579019026391054!GO:0004576;oligosaccharyl transferase activity;0.000580191784201966!GO:0051052;regulation of DNA metabolic process;0.000603313089474861!GO:0000082;G1/S transition of mitotic cell cycle;0.000604853467484472!GO:0016563;transcription activator activity;0.000621331154638178!GO:0006839;mitochondrial transport;0.000622090304343901!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000627044416343221!GO:0030027;lamellipodium;0.000627159521745417!GO:0004674;protein serine/threonine kinase activity;0.00065187455501888!GO:0003713;transcription coactivator activity;0.000712064305614428!GO:0043681;protein import into mitochondrion;0.000723638698948999!GO:0051920;peroxiredoxin activity;0.000761549670788557!GO:0000314;organellar small ribosomal subunit;0.000855804809664599!GO:0005763;mitochondrial small ribosomal subunit;0.000855804809664599!GO:0051252;regulation of RNA metabolic process;0.000861316933231399!GO:0005876;spindle microtubule;0.000947344797342785!GO:0000910;cytokinesis;0.000965263108648594!GO:0005856;cytoskeleton;0.000971645501151251!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102663004564003!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102663004564003!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102663004564003!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00103057429957625!GO:0005875;microtubule associated complex;0.00103057429957625!GO:0030133;transport vesicle;0.00112251012434308!GO:0033116;ER-Golgi intermediate compartment membrane;0.00118208490041866!GO:0005769;early endosome;0.00119978771998272!GO:0006350;transcription;0.00121941994847877!GO:0051789;response to protein stimulus;0.00123902416459549!GO:0006986;response to unfolded protein;0.00123902416459549!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00142176638540976!GO:0003678;DNA helicase activity;0.00151016820185092!GO:0006383;transcription from RNA polymerase III promoter;0.00151016820185092!GO:0016787;hydrolase activity;0.00159131857211631!GO:0031968;organelle outer membrane;0.00159236624695187!GO:0008186;RNA-dependent ATPase activity;0.00174605526028716!GO:0051128;regulation of cellular component organization and biogenesis;0.00176462929144685!GO:0031072;heat shock protein binding;0.00177324400431358!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00177728461876136!GO:0031124;mRNA 3'-end processing;0.00179101694941395!GO:0018196;peptidyl-asparagine modification;0.00189003264183385!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00189003264183385!GO:0005637;nuclear inner membrane;0.0019448133410049!GO:0008286;insulin receptor signaling pathway;0.00210356903768857!GO:0005684;U2-dependent spliceosome;0.00214340810958502!GO:0003779;actin binding;0.00214340810958502!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00215758603145293!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00217189212899016!GO:0016491;oxidoreductase activity;0.00222945442040899!GO:0016044;membrane organization and biogenesis;0.00227369882018527!GO:0009116;nucleoside metabolic process;0.00228819861699012!GO:0048500;signal recognition particle;0.00241161538513698!GO:0032508;DNA duplex unwinding;0.00251982388984731!GO:0032392;DNA geometric change;0.00251982388984731!GO:0000922;spindle pole;0.00254618923239918!GO:0019867;outer membrane;0.00257481060840892!GO:0043488;regulation of mRNA stability;0.00260941530104885!GO:0043487;regulation of RNA stability;0.00260941530104885!GO:0000228;nuclear chromosome;0.00268113657590745!GO:0048468;cell development;0.00269737862183833!GO:0005791;rough endoplasmic reticulum;0.00271483266097514!GO:0030118;clathrin coat;0.00275908224650026!GO:0046474;glycerophospholipid biosynthetic process;0.00278088866204274!GO:0007006;mitochondrial membrane organization and biogenesis;0.00284399869454578!GO:0030663;COPI coated vesicle membrane;0.00284404995745906!GO:0030126;COPI vesicle coat;0.00284404995745906!GO:0006268;DNA unwinding during replication;0.00287650627742977!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00295170796717475!GO:0005741;mitochondrial outer membrane;0.00298644684611419!GO:0000792;heterochromatin;0.00301257134784729!GO:0006402;mRNA catabolic process;0.00303011159973385!GO:0006891;intra-Golgi vesicle-mediated transport;0.00315813118468402!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00316288519806152!GO:0008139;nuclear localization sequence binding;0.00316288519806152!GO:0048487;beta-tubulin binding;0.00319221527465792!GO:0009165;nucleotide biosynthetic process;0.00336511505612615!GO:0045892;negative regulation of transcription, DNA-dependent;0.00349001673762729!GO:0042393;histone binding;0.00358401611669055!GO:0008312;7S RNA binding;0.00370228687593711!GO:0006352;transcription initiation;0.00371552428021179!GO:0006611;protein export from nucleus;0.0039417464722886!GO:0030521;androgen receptor signaling pathway;0.00425779947361632!GO:0007050;cell cycle arrest;0.00436037798424127!GO:0006284;base-excision repair;0.00437410062547414!GO:0009112;nucleobase metabolic process;0.00444424316348161!GO:0045893;positive regulation of transcription, DNA-dependent;0.00460418522131045!GO:0004004;ATP-dependent RNA helicase activity;0.00460804083324341!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00464174137528302!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00464174137528302!GO:0030134;ER to Golgi transport vesicle;0.00482117729021873!GO:0030137;COPI-coated vesicle;0.00501757342019603!GO:0010468;regulation of gene expression;0.00510887683436862!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00515302554586157!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00524831520205313!GO:0045047;protein targeting to ER;0.00524831520205313!GO:0035258;steroid hormone receptor binding;0.00534842383728561!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.005598763406353!GO:0006595;polyamine metabolic process;0.00565774611163063!GO:0001725;stress fiber;0.00573613693436278!GO:0032432;actin filament bundle;0.00573613693436278!GO:0030127;COPII vesicle coat;0.00580842275756306!GO:0012507;ER to Golgi transport vesicle membrane;0.00580842275756306!GO:0030658;transport vesicle membrane;0.00582136775201496!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00592465572334834!GO:0017166;vinculin binding;0.0061424414706967!GO:0016741;transferase activity, transferring one-carbon groups;0.00629168723548087!GO:0044452;nucleolar part;0.00639268290307136!GO:0016584;nucleosome positioning;0.00641971310472826!GO:0030880;RNA polymerase complex;0.00647306286550472!GO:0030176;integral to endoplasmic reticulum membrane;0.00657999568618241!GO:0006275;regulation of DNA replication;0.00660666576849605!GO:0043284;biopolymer biosynthetic process;0.00666434192279847!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00671161686735838!GO:0016197;endosome transport;0.00704226101254691!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00719938256786373!GO:0006144;purine base metabolic process;0.00727717904312028!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00750865445642589!GO:0007346;regulation of progression through mitotic cell cycle;0.00759234448613874!GO:0043624;cellular protein complex disassembly;0.00766252650900234!GO:0006338;chromatin remodeling;0.00817702690501091!GO:0051287;NAD binding;0.00858577644975721!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00932464299994941!GO:0008017;microtubule binding;0.00944624701180837!GO:0008022;protein C-terminus binding;0.00947221336006215!GO:0000819;sister chromatid segregation;0.00947221336006215!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00947221336006215!GO:0055083;monovalent inorganic anion homeostasis;0.00947221336006215!GO:0055064;chloride ion homeostasis;0.00947221336006215!GO:0030644;cellular chloride ion homeostasis;0.00947221336006215!GO:0000070;mitotic sister chromatid segregation;0.00955442597101856!GO:0006405;RNA export from nucleus;0.00955442597101856!GO:0005869;dynactin complex;0.0095770142345059!GO:0044262;cellular carbohydrate metabolic process;0.00957864535682857!GO:0032984;macromolecular complex disassembly;0.00975703942228829!GO:0008180;signalosome;0.0100983545850353!GO:0007264;small GTPase mediated signal transduction;0.0101341465482429!GO:0005832;chaperonin-containing T-complex;0.0105661630864595!GO:0007243;protein kinase cascade;0.0106013763281058!GO:0008168;methyltransferase activity;0.0106805828460597!GO:0046489;phosphoinositide biosynthetic process;0.0107007864065662!GO:0030660;Golgi-associated vesicle membrane;0.0108087309635766!GO:0003746;translation elongation factor activity;0.0110438825229795!GO:0008610;lipid biosynthetic process;0.0114102890987998!GO:0031123;RNA 3'-end processing;0.0114979364455532!GO:0032774;RNA biosynthetic process;0.0115525486754253!GO:0000049;tRNA binding;0.0118578677349287!GO:0046467;membrane lipid biosynthetic process;0.0123867249155877!GO:0030132;clathrin coat of coated pit;0.0126953933268836!GO:0051087;chaperone binding;0.012773160768461!GO:0030145;manganese ion binding;0.0129501907176612!GO:0000725;recombinational repair;0.0132053045642974!GO:0000724;double-strand break repair via homologous recombination;0.0132053045642974!GO:0006401;RNA catabolic process;0.0132452589370749!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0132720546112804!GO:0000428;DNA-directed RNA polymerase complex;0.0132720546112804!GO:0006351;transcription, DNA-dependent;0.0132755269713986!GO:0003677;DNA binding;0.0132755269713986!GO:0008033;tRNA processing;0.0132755269713986!GO:0032259;methylation;0.0133229748014346!GO:0006378;mRNA polyadenylation;0.0133229748014346!GO:0043241;protein complex disassembly;0.0134094233803473!GO:0008047;enzyme activator activity;0.0134424829257135!GO:0030032;lamellipodium biogenesis;0.0137376229255197!GO:0000096;sulfur amino acid metabolic process;0.0137485354548169!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0139332312286714!GO:0015399;primary active transmembrane transporter activity;0.0139332312286714!GO:0051539;4 iron, 4 sulfur cluster binding;0.0142382725727409!GO:0030119;AP-type membrane coat adaptor complex;0.0143946420776428!GO:0045941;positive regulation of transcription;0.0145730124518005!GO:0030496;midbody;0.0146066147071684!GO:0043596;nuclear replication fork;0.0146223378935909!GO:0040029;regulation of gene expression, epigenetic;0.0146223378935909!GO:0005862;muscle thin filament tropomyosin;0.0146887474263262!GO:0015992;proton transport;0.0147549820369059!GO:0044454;nuclear chromosome part;0.0149302974913399!GO:0043414;biopolymer methylation;0.0151464648204791!GO:0051656;establishment of organelle localization;0.0152443080663524!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0156214902721819!GO:0031529;ruffle organization and biogenesis;0.0159289464427032!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0160125865159215!GO:0006818;hydrogen transport;0.0162483218931755!GO:0032200;telomere organization and biogenesis;0.0166833164531717!GO:0000723;telomere maintenance;0.0166833164531717!GO:0043022;ribosome binding;0.0167765111926499!GO:0031901;early endosome membrane;0.0168446156643178!GO:0046483;heterocycle metabolic process;0.0169131639054908!GO:0016251;general RNA polymerase II transcription factor activity;0.0171400259411366!GO:0006730;one-carbon compound metabolic process;0.0172987369465513!GO:0003711;transcription elongation regulator activity;0.0176706178842185!GO:0000781;chromosome, telomeric region;0.0178952018790204!GO:0000152;nuclear ubiquitin ligase complex;0.0178952018790204!GO:0004527;exonuclease activity;0.0179933570730155!GO:0006270;DNA replication initiation;0.0181321837824894!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0184089498128392!GO:0015002;heme-copper terminal oxidase activity;0.0184089498128392!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0184089498128392!GO:0004129;cytochrome-c oxidase activity;0.0184089498128392!GO:0005758;mitochondrial intermembrane space;0.0185080183272771!GO:0016272;prefoldin complex;0.0192288507691167!GO:0006720;isoprenoid metabolic process;0.0194190230543322!GO:0051098;regulation of binding;0.0198977490327356!GO:0000793;condensed chromosome;0.0199371879180954!GO:0030131;clathrin adaptor complex;0.0200793945784002!GO:0006091;generation of precursor metabolites and energy;0.0202508303578443!GO:0016408;C-acyltransferase activity;0.0206716356238562!GO:0000209;protein polyubiquitination;0.0207014860775825!GO:0051270;regulation of cell motility;0.0207462032811905!GO:0031570;DNA integrity checkpoint;0.0220210104273841!GO:0050681;androgen receptor binding;0.0224953253359853!GO:0000339;RNA cap binding;0.0225334970141419!GO:0003756;protein disulfide isomerase activity;0.022558016815787!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.022558016815787!GO:0031577;spindle checkpoint;0.022558016815787!GO:0000118;histone deacetylase complex;0.0232381759111705!GO:0006220;pyrimidine nucleotide metabolic process;0.0232381759111705!GO:0004003;ATP-dependent DNA helicase activity;0.0234220651996056!GO:0048522;positive regulation of cellular process;0.0237084334350759!GO:0030518;steroid hormone receptor signaling pathway;0.0237962237034801!GO:0006509;membrane protein ectodomain proteolysis;0.0237962237034801!GO:0033619;membrane protein proteolysis;0.0237962237034801!GO:0005773;vacuole;0.0241267718653758!GO:0031970;organelle envelope lumen;0.0250448538138942!GO:0005669;transcription factor TFIID complex;0.0250448538138942!GO:0006289;nucleotide-excision repair;0.0254793178652701!GO:0051101;regulation of DNA binding;0.0257688357939193!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0272837789187044!GO:0005784;translocon complex;0.0288154450450681!GO:0051540;metal cluster binding;0.0294247054101258!GO:0051536;iron-sulfur cluster binding;0.0294247054101258!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0296049086622704!GO:0006007;glucose catabolic process;0.0307821672311296!GO:0007021;tubulin folding;0.0310974925331933!GO:0043130;ubiquitin binding;0.0310974925331933!GO:0032182;small conjugating protein binding;0.0310974925331933!GO:0008143;poly(A) binding;0.0311131602186004!GO:0008536;Ran GTPase binding;0.0317993319396057!GO:0006376;mRNA splice site selection;0.032052809365899!GO:0000389;nuclear mRNA 3'-splice site recognition;0.032052809365899!GO:0065009;regulation of a molecular function;0.0322475927672965!GO:0022890;inorganic cation transmembrane transporter activity;0.0326335824843066!GO:0046128;purine ribonucleoside metabolic process;0.0329374528422434!GO:0042278;purine nucleoside metabolic process;0.0329374528422434!GO:0016301;kinase activity;0.0331838275796728!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0339805023304513!GO:0006740;NADPH regeneration;0.0339805023304513!GO:0006098;pentose-phosphate shunt;0.0339805023304513!GO:0006892;post-Golgi vesicle-mediated transport;0.0345781883344131!GO:0035267;NuA4 histone acetyltransferase complex;0.0346013549656964!GO:0005663;DNA replication factor C complex;0.0347043782722574!GO:0046112;nucleobase biosynthetic process;0.0347869325244891!GO:0006650;glycerophospholipid metabolic process;0.0354320774735674!GO:0031371;ubiquitin conjugating enzyme complex;0.0354320774735674!GO:0000084;S phase of mitotic cell cycle;0.0354382026055066!GO:0008538;proteasome activator activity;0.0354382026055066!GO:0008154;actin polymerization and/or depolymerization;0.0368794445762206!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0369477490396853!GO:0033043;regulation of organelle organization and biogenesis;0.0369477490396853!GO:0016125;sterol metabolic process;0.0369486889150721!GO:0045792;negative regulation of cell size;0.0370732940096826!GO:0005881;cytoplasmic microtubule;0.037114125381493!GO:0043550;regulation of lipid kinase activity;0.0378610646711692!GO:0030911;TPR domain binding;0.0378610646711692!GO:0008652;amino acid biosynthetic process;0.038091047318096!GO:0007004;telomere maintenance via telomerase;0.0385410885777798!GO:0004523;ribonuclease H activity;0.0385410885777798!GO:0000097;sulfur amino acid biosynthetic process;0.0388379876979772!GO:0000086;G2/M transition of mitotic cell cycle;0.0389733476733955!GO:0030308;negative regulation of cell growth;0.0391871665478313!GO:0007018;microtubule-based movement;0.0392374963368426!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0397023084633022!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0402028720906837!GO:0006607;NLS-bearing substrate import into nucleus;0.0406544906561635!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0407955060510156!GO:0032906;transforming growth factor-beta2 production;0.040958635886865!GO:0032909;regulation of transforming growth factor-beta2 production;0.040958635886865!GO:0045045;secretory pathway;0.0414714941221666!GO:0005521;lamin binding;0.0415830435353994!GO:0005871;kinesin complex;0.041730678208394!GO:0050662;coenzyme binding;0.0418890165064088!GO:0016407;acetyltransferase activity;0.0419240986612663!GO:0031625;ubiquitin protein ligase binding;0.0421198785090937!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0426748274249748!GO:0040011;locomotion;0.0428470357813537!GO:0008299;isoprenoid biosynthetic process;0.0428580806737785!GO:0032153;cell division site;0.0428580806737785!GO:0032155;cell division site part;0.0428580806737785!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0428580806737785!GO:0022415;viral reproductive process;0.0430277612386135!GO:0016585;chromatin remodeling complex;0.0432938850039878!GO:0033559;unsaturated fatty acid metabolic process;0.0433295452349828!GO:0006636;unsaturated fatty acid biosynthetic process;0.0433295452349828!GO:0008629;induction of apoptosis by intracellular signals;0.0441087451998464!GO:0006497;protein amino acid lipidation;0.044334583881138!GO:0008276;protein methyltransferase activity;0.0443981959520482!GO:0000178;exosome (RNase complex);0.0445890376915179!GO:0043189;H4/H2A histone acetyltransferase complex;0.0446754087103909!GO:0005680;anaphase-promoting complex;0.0457376036346584!GO:0009303;rRNA transcription;0.0457795281754486!GO:0045449;regulation of transcription;0.0461628206369196!GO:0007034;vacuolar transport;0.0467305616886551!GO:0005938;cell cortex;0.0467852570956169!GO:0031902;late endosome membrane;0.046896331239932!GO:0009003;signal peptidase activity;0.0471820710662972!GO:0007265;Ras protein signal transduction;0.0474931845895444!GO:0005652;nuclear lamina;0.0485398857768203!GO:0007030;Golgi organization and biogenesis;0.0488167043696482!GO:0005096;GTPase activator activity;0.0490846737160457!GO:0017134;fibroblast growth factor binding;0.0496242836048074
|sample_id=11392
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cerebral cortex
|top_motifs=TFDP1:2.42117043707;GFI1:2.41633997969;OCT4_SOX2{dimer}:2.17714134858;NFY{A,B,C}:1.81518293591;E2F1..5:1.60906684864;XCPE1{core}:1.57435924212;ZIC1..3:1.56953695364;RBPJ:1.5053410036;SOX2:1.49417885796;SOX17:1.47345835292;SOX{8,9,10}:1.40608217929;POU1F1:1.31712864832;ZNF384:1.29549730554;NKX2-3_NKX2-5:1.29398603839;GTF2A1,2:1.28849779428;NKX2-1,4:1.25659737485;PBX1:1.11777427611;MTE{core}:1.09847243876;POU5F1:1.09217525413;MZF1:1.08774246255;PAX6:1.08768414195;LEF1_TCF7_TCF7L1,2:1.08681508918;TFAP2B:1.0796190597;LHX3,4:1.06856362418;GCM1,2:1.06522230956;NKX6-1,2:1.06100077082;BREu{core}:1.00029651818;TOPORS:0.966044642325;SP1:0.949289055438;HIC1:0.949077346554;CDC5L:0.941995436627;EGR1..3:0.923000698265;NR6A1:0.913381925603;ZFP161:0.860868733549;NANOG:0.85206592588;MYB:0.830383271693;NR3C1:0.821325762063;POU3F1..4:0.812814592717;MAZ:0.802444413856;PITX1..3:0.798801578398;ZNF143:0.787569051229;TFAP2{A,C}:0.771443984514;CDX1,2,4:0.769714373061;FOXP1:0.762225874232;NRF1:0.719153186753;ONECUT1,2:0.686635316807;UFEwm:0.669942076315;GFI1B:0.66575009203;TEAD1:0.661584969063;PAX5:0.651029506659;SRF:0.629692993847;POU2F1..3:0.602343862963;EVI1:0.586579194281;GATA4:0.57470011932;HMGA1,2:0.558899873957;GTF2I:0.548786224055;JUN:0.539017314309;RFX1:0.525622230665;TLX1..3_NFIC{dimer}:0.523815823442;ELK1,4_GABP{A,B1}:0.521341205981;MYBL2:0.488682934403;STAT1,3:0.487487099206;ALX1:0.452354573541;PATZ1:0.449889817807;KLF4:0.437778805306;HOX{A4,D4}:0.421472667301;TFAP4:0.383808091427;PAX1,9:0.3835340031;NKX2-2,8:0.344491467084;PRRX1,2:0.34013167103;PAX4:0.306472956005;IKZF2:0.297406531101;STAT5{A,B}:0.274878988707;LMO2:0.273010310086;HSF1,2:0.261537029359;VSX1,2:0.230967328384;IKZF1:0.201028039323;EBF1:0.196160920346;GZF1:0.193546123058;PRDM1:0.188269558223;NKX3-2:0.186326463965;CUX2:0.163090390621;ZBTB6:0.152090803113;RREB1:0.137674194485;AIRE:0.105635555054;EN1,2:0.0940311903161;PAX8:0.0935904438976;MED-1{core}:0.0649669895459;HOXA9_MEIS1:0.0594818189785;FOXP3:0.0501293500414;HMX1:0.0431850287674;NFIX:0.0307902410676;SOX5:0.0086614957741;NHLH1,2:0.00709764822797;T:0.00181452319722;TFCP2:0.00180137793481;AR:-0.0199348366403;TP53:-0.0225527862549;YY1:-0.0446741413003;MEF2{A,B,C,D}:-0.0498122251346;RXR{A,B,G}:-0.0507779931418;MYOD1:-0.0518041445698;ATF4:-0.0654523959585;HOX{A5,B5}:-0.0765871077521;CRX:-0.0785283572098;ALX4:-0.0816222377736;HNF4A_NR2F1,2:-0.102441081285;ESRRA:-0.103855680156;TBP:-0.10809980417;CREB1:-0.109125158262;FOXN1:-0.11112174778;FOXM1:-0.112436533723;FOXD3:-0.120612458615;NR1H4:-0.128793001316;TEF:-0.132217877431;ZBTB16:-0.140942264555;HNF1A:-0.143843151846;STAT2,4,6:-0.15764318022;NFATC1..3:-0.164877766267;ZNF148:-0.1649357868;PAX3,7:-0.173142069006;NANOG{mouse}:-0.175158772416;FOS_FOS{B,L1}_JUN{B,D}:-0.181013617328;NFE2L2:-0.181774509046;MYFfamily:-0.219247318455;BACH2:-0.223015051281;ARID5B:-0.252654724197;ZNF423:-0.282338126665;REST:-0.282932579154;TGIF1:-0.290335088041;NKX3-1:-0.292990989427;MTF1:-0.294487201595;XBP1:-0.303401265015;FOXL1:-0.317628690823;DBP:-0.323076842767;HOX{A6,A7,B6,B7}:-0.326310675965;NFKB1_REL_RELA:-0.332550553736;TBX4,5:-0.364708039219;RUNX1..3:-0.379146231221;FOSL2:-0.379531823513;FOXA2:-0.391856546629;AHR_ARNT_ARNT2:-0.392283238311;EP300:-0.393349189808;RFX2..5_RFXANK_RFXAP:-0.404363021492;NFE2L1:-0.425637679609;SMAD1..7,9:-0.460052269328;NFE2:-0.469067529099;ATF2:-0.471599229955;ADNP_IRX_SIX_ZHX:-0.481326529678;POU6F1:-0.543225652401;BPTF:-0.550871673695;SNAI1..3:-0.555776843621;SPIB:-0.585927293202;MAFB:-0.588665439247;IRF7:-0.593894455575;IRF1,2:-0.628389881532;DMAP1_NCOR{1,2}_SMARC:-0.641822501892;NFIL3:-0.65112311264;SPI1:-0.651718441316;GATA6:-0.666858837415;HBP1_HMGB_SSRP1_UBTF:-0.6705653479;RXRA_VDR{dimer}:-0.703338881927;ELF1,2,4:-0.722076462141;HAND1,2:-0.725935124365;HES1:-0.745086168057;NR5A1,2:-0.747475175543;HLF:-0.747896832386;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.752159449709;SPZ1:-0.769058055706;ESR1:-0.800049370076;ZEB1:-0.813434014151;CEBPA,B_DDIT3:-0.817749076063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878466975264;ATF5_CREB3:-0.882855142312;GLI1..3:-0.88598908223;PDX1:-0.921570039909;FOXO1,3,4:-0.922798090032;FOX{D1,D2}:-0.935454872596;ETS1,2:-0.93855449384;TAL1_TCF{3,4,12}:-0.938812733952;PPARG:-1.01115875523;SREBF1,2:-1.04612825745;FOX{F1,F2,J1}:-1.06781316629;RORA:-1.06820066626;PAX2:-1.07171298273;bHLH_family:-1.20830329134;ATF6:-1.22611744819;FOXQ1:-1.24041141445;HIF1A:-1.25011310166;ZNF238:-1.36329755358;FOX{I1,J2}:-1.50534604962;TLX2:-1.58850134722
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11392-118C6;search_select_hide=table117:FF:11392-118C6
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Astrocyte - cerebral cortex, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12005
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebral cortex
dev stagefetus
sexunknown
agefetal
cell typeastrocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3641
catalog numberSC1805
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005736
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12005 CAGE DRX008117 DRR008989
Accession ID Hg19

Library idBAMCTSS
CNhs12005 DRZ000414 DRZ001799
Accession ID Hg38

Library idBAMCTSS
CNhs12005 DRZ011764 DRZ013149
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005736
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GTGAAA sRNA-Seq DRX037104 DRR041470
Accession ID Hg19

Library idBAMCTSS
SRhi10007.GTGAAA DRZ007112


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.015
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.63
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.121
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0326
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0514
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.045
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0973
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0835
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.696
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0453
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0514
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0514
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.607
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.441
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0514
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.212
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0514
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.18
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.353
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.177
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.252
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12005

Jaspar motifP-value
MA0002.24.55744e-4
MA0003.10.0869
MA0004.10.145
MA0006.10.696
MA0007.10.392
MA0009.10.177
MA0014.10.584
MA0017.10.00221
MA0018.20.441
MA0019.10.919
MA0024.12.85241e-6
MA0025.10.485
MA0027.10.428
MA0028.10.674
MA0029.10.714
MA0030.10.081
MA0031.10.0133
MA0035.20.0644
MA0038.12.43518e-6
MA0039.20.922
MA0040.10.0438
MA0041.10.281
MA0042.10.127
MA0043.10.842
MA0046.10.996
MA0047.28.17095e-4
MA0048.10.255
MA0050.10.00715
MA0051.10.0264
MA0052.10.517
MA0055.10.303
MA0057.10.482
MA0058.10.0771
MA0059.10.0642
MA0060.11.36246e-14
MA0061.10.0182
MA0062.20.384
MA0065.20.00231
MA0066.10.0691
MA0067.10.287
MA0068.10.00102
MA0069.10.973
MA0070.10.0184
MA0071.10.25
MA0072.10.366
MA0073.10.846
MA0074.10.486
MA0076.10.569
MA0077.10.0377
MA0078.10.709
MA0079.20.701
MA0080.22.39032e-14
MA0081.10.0344
MA0083.10.18
MA0084.10.438
MA0087.10.625
MA0088.10.452
MA0090.10.133
MA0091.10.0235
MA0092.10.485
MA0093.10.16
MA0099.21.90627e-7
MA0100.10.275
MA0101.10.196
MA0102.20.00572
MA0103.10.0428
MA0104.20.187
MA0105.12.72059e-5
MA0106.10.148
MA0107.10.0851
MA0108.20.0104
MA0111.10.465
MA0112.21.06548e-4
MA0113.10.21
MA0114.10.0259
MA0115.10.373
MA0116.13.41034e-4
MA0117.10.784
MA0119.10.311
MA0122.10.84
MA0124.10.546
MA0125.10.0137
MA0131.10.508
MA0135.10.483
MA0136.11.63296e-15
MA0137.20.372
MA0138.20.187
MA0139.10.0656
MA0140.10.0565
MA0141.10.0429
MA0142.10.0302
MA0143.10.0894
MA0144.10.0739
MA0145.10.244
MA0146.10.0847
MA0147.10.192
MA0148.10.00666
MA0149.10.0359
MA0150.19.02708e-4
MA0152.10.2
MA0153.10.781
MA0154.10.00295
MA0155.10.669
MA0156.11.21391e-5
MA0157.10.0168
MA0159.10.00894
MA0160.10.029
MA0162.10.507
MA0163.14.33028e-8
MA0164.10.604
MA0258.10.00621
MA0259.10.475



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12005

Novel motifP-value
10.0608
100.0898
1000.899
1010.525
1020.64
1030.0985
1040.871
1050.256
1060.0478
1070.592
1080.5
1090.0278
110.0613
1100.162
1110.0405
1120.022
1130.439
1140.00213
1150.34
1160.893
1170.102
1180.375
1190.179
120.518
1200.977
1210.775
1220.325
1230.213
1240.345
1250.913
1260.179
1270.0804
1280.263
1290.246
130.277
1300.281
1310.449
1320.957
1330.981
1340.861
1350.242
1360.854
1370.158
1380.0612
1390.0019
140.765
1400.101
1410.249
1420.693
1430.00338
1440.807
1450.818
1460.9
1470.907
1480.0144
1490.12
150.0794
1500.569
1510.325
1520.172
1530.279
1540.95
1550.295
1560.519
1570.358
1580.109
1590.743
160.233
1600.214
1610.601
1620.936
1630.785
1640.0596
1650.142
1660.287
1670.623
1680.503
1690.00924
170.129
180.113
190.412
20.528
200.844
210.619
220.244
230.0714
240.352
250.463
260.369
270.188
280.761
290.133
30.0542
300.89
310.726
320.263
330.52
340.671
350.159
360.0401
370.0506
380.188
390.993
40.648
400.193
410.159
420.186
430.0858
440.343
450.538
460.0472
470.124
480.197
490.0966
50.122
500.781
510.312
520.524
530.6
540.338
550.215
560.458
570.474
580.0621
590.133
60.845
600.0629
610.333
620.0422
630.187
640.291
650.106
660.549
670.774
680.653
690.795
70.282
700.00651
710.0521
720.145
730.116
740.218
750.0463
760.344
770.149
780.211
790.546
80.273
800.24
810.44
820.0169
830.673
840.537
850.0289
860.181
870.94
880.711
890.152
90.285
900.338
910.714
920.0371
930.0769
940.0235
950.125
960.206
970.633
980.206
990.668



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12005


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002605 (astrocyte of the cerebral cortex)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000194 (human astrocyte of the cerebral cortex sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

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