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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0001828,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0004111,UBERON:0004119,UBERON:0005423,UBERON:0007026
|DRA_sample_Accession=CAGE@SAMD00005363
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002552
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005363
|accession_numbers=CAGE;DRX008262;DRR009134;DRZ000559;DRZ001944;DRZ011909;DRZ013294
|accession_numbers_RNASeq=sRNA-Seq;DRX037221;DRR041587;DRZ007229
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr9:77112244..77112262,+!p1@RORB!2.01!111.80!RORB;;chr1:170632285..170632309,+!p1@PRRX1!1.99!107.67!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.86!71.40!SIX2;;chr7:19157248..19157268,-!p1@TWIST1!1.82!172.45!TWIST1;;chr16:86544113..86544145,+!p1@FOXF1!1.75!67.99!FOXF1;;chr6:1389789..1389821,+!p1@FOXF2!1.69!65.72!FOXF2;;chr14:37131058..37131139,+!p1@PAX9!1.64!43.09!PAX9;;chr9:96717629..96717644,-!p1@BARX1!1.59!37.61!BARX1;;chr15:57511609..57511651,+!p2@TCF12!1.57!59.93!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!45.88!TFAP2C;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.51!33.17!GLIS1;;chr9:132427883..132427951,+!p2@PRRX2!1.51!31.00!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.49!40.81!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.48!90.51!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.47!36.58!PRRX2;;chr14:61116183..61116208,-!p1@SIX1!1.43!96.09!SIX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!127.30!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.39!677.09!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!1.38!100.95!TOX2;;chr3:141105705..141105770,+!p4@ZBTB38!1.38!27.79!ZBTB38;;chr14:37126765..37126799,+!p2@PAX9!1.37!22.42!PAX9;;chr15:42749722..42749739,-!p2@ZFP106!1.32!34.92!ZFP106;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.31!19.22!POU3F3;;chr6:1389989..1390019,+!p2@FOXF2!1.30!18.81!FOXF2;;chr12:115122318..115122331,-!p2@TBX3!1.29!18.70!TBX3;;chr16:86600426..86600441,+!p1@FOXC2!1.24!40.09!FOXC2;;chr7:19157043..19157088,-!p2@TWIST1!1.23!40.19!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.23!26.97!TWIST2;;chr7:44143925..44143970,+!p1@AEBP1!1.22!341.70!AEBP1;;chr2:19558373..19558392,-!p1@OSR1!1.22!42.47!OSR1;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.83!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!1.18!15.09!SHOX2;;chr2:45236579..45236596,-!p2@SIX2!1.18!14.26!SIX2;;chr1:170632250..170632277,+!p7@PRRX1!1.17!13.85!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.15!38.54!MSX1;;chr1:170633262..170633285,+!p3@PRRX1!1.15!14.88!PRRX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.13!18.08!ZBTB16;;chr3:12329358..12329393,+!p3@PPARG!1.11!29.14!PPARG;;chr8:49833948..49833973,-!p2@SNAI2!1.08!70.88!SNAI2;;chr3:12329397..12329433,+!p2@PPARG!1.08!25.52!PPARG;;chr8:49833978..49833996,-!p1@SNAI2!1.07!222.15!SNAI2;;chr2:95963052..95963106,+!p1@KCNIP3!1.07!10.75!KCNIP3;;chr2:96012397..96012417,+!p3@KCNIP3!1.07!10.75!KCNIP3;;chr16:86600870..86600921,+!p2@FOXC2!1.07!10.75!FOXC2;;chr6:1389824..1389840,+!p3@FOXF2!1.07!10.64!FOXF2;;chr1:25256756..25256774,-!p1@RUNX3!1.05!19.32!RUNX3;;chr6:85474299..85474324,-!p1@TBX18!1.05!18.50!TBX18;;chr7:14029283..14029311,-!p1@ETV1!1.03!52.90!ETV1;;chr7:44143978..44143989,+!p2@AEBP1!1.03!18.08!AEBP1;;chr7:113726357..113726443,+!p1@FOXP2!1.03!16.84!FOXP2;;chr1:170632137..170632172,+!p10@PRRX1!1.02!9.40!PRRX1;;chr9:77112225..77112238,+!p2@RORB!1.02!9.40!RORB;;chr20:42543506..42543549,+!p2@TOX2!1.01!22.53!TOX2;;chr10:28034739..28034756,-!p1@MKX!1.01!9.20!MKX;;chr11:46299539..46299620,+!p2@CREB3L1!1.00!15.60!CREB3L1;;chr2:96012353..96012378,+!p4@KCNIP3!1.00!8.99!KCNIP3;;chr9:102584262..102584276,+!p1@NR4A3!0.99!19.94!NR4A3;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!236.51!TSC22D3;;chr7:14028488..14028516,-!p2@ETV1!0.98!9.40!ETV1;;chr5:92918919..92918942,+!p1@NR2F1!0.97!37.82!NR2F1;;chr21:47063625..47063658,+!p1@PCBP3!0.97!36.99!PCBP3;;chr9:102584159..102584174,+!p2@NR4A3!0.97!15.40!NR4A3;;chr14:37126814..37126834,+!p4@PAX9!0.96!8.16!PAX9;;chr12:115122303..115122314,-!p6@TBX3!0.96!8.06!TBX3;;chr5:158526917..158526932,-!p1@EBF1!0.95!20.15!EBF1;;chr6:85473156..85473210,-!p2@TBX18!0.95!9.82!TBX18;;chr15:57511589..57511608,+!p4@TCF12!0.95!7.85!TCF12;;chr5:321810..321877,+!p1@AHRR!0.94!25.21!AHRR;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.39!NFATC4;;chr10:31607702..31607755,+!p3@ZEB1!0.93!8.78!ZEB1;;chr9:94186131..94186174,-!p2@NFIL3!0.92!62.00!NFIL3;;chr1:170632115..170632136,+!p9@PRRX1!0.92!7.34!PRRX1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.64!ZBTB38;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.72!KDM5D;;chr9:94186101..94186122,-!p1@NFIL3!0.88!96.20!NFIL3;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.39!TBX2;;chr1:75600067..75600094,+!p2@LHX8!0.88!6.61!LHX8;;chr8:93074803..93074845,-!p1@RUNX1T1!0.88!6.51!RUNX1T1;;chr17:7492684..7492778,-!p2@SOX15!0.87!13.95!SOX15;;chr12:115121962..115121987,-!p1@TBX3!0.86!55.28!TBX3;;chrY:2803415..2803468,+!p1@ZFY!0.86!6.30!ZFY;;chr1:170632477..170632506,+!p6@PRRX1!0.86!6.30!PRRX1;;chr2:45236648..45236659,-!p5@SIX2!0.86!6.30!SIX2;;chr7:17338266..17338282,+!p1@AHR!0.85!69.85!AHR;;chr8:72756667..72756736,-!p2@MSC!0.85!9.71!MSC;;chrX:66763856..66763896,+!p1@AR!0.85!8.99!AR;;chr2:96012277..96012290,+!p5@KCNIP3!0.85!6.10!KCNIP3;;chr5:92918956..92918969,+!p4@NR2F1!0.84!6.51!NR2F1;;chr18:52969844..52969895,-!p27@TCF4!0.84!5.89!TCF4;;chr1:158969752..158969780,+!p6@IFI16!0.83!10.44!IFI16;;chr8:72756637..72756664,-!p3@MSC!0.83!6.61!MSC;;chr12:85673977..85674015,+!p1@ALX1!0.83!5.79!ALX1;;chr20:55205825..55205847,+!p2@TFAP2C!0.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor3.CNhs12006.11394-118C8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor3.CNhs12006.11394-118C8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor3.CNhs12006.11394-118C8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor3.CNhs12006.11394-118C8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor3.CNhs12006.11394-118C8.hg38.nobarcode.ctss.bed.gz
|id=FF:11394-118C8
|id=FF:11394-118C8
|is_a=EFO:0002091;;FF:0000002;;FF:0000063;;FF:0000210
|is_a=EFO:0002091;;FF:0000063
|is_obsolete=
|library_id=CNhs12006
|library_id_phase_based=2:CNhs12006
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11394
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GTGGCC.11394
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11394
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GTGGCC.11394
|name=Fibroblast - Gingival, donor3
|name=Fibroblast - Gingival, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12006,LSID837,release011,COMPLETED
|profile_hcage=CNhs12006,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=118
|rna_box=118
|rna_catalog_number=SC2625
|rna_catalog_number=SC2625
Line 55: Line 82:
|rna_tube_id=118C8
|rna_tube_id=118C8
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.GTGGCC
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=unknown
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41513297893593e-233!GO:0005737;cytoplasm;1.83436919597171e-186!GO:0043226;organelle;2.54561700335631e-180!GO:0043229;intracellular organelle;4.42189536888593e-180!GO:0043231;intracellular membrane-bound organelle;4.42189536888593e-180!GO:0043227;membrane-bound organelle;9.71445981916883e-180!GO:0044444;cytoplasmic part;4.24246914888814e-131!GO:0044422;organelle part;3.14847969229758e-119!GO:0044446;intracellular organelle part;6.94080071780029e-118!GO:0044238;primary metabolic process;8.06972887288347e-89!GO:0044237;cellular metabolic process;1.77248289835469e-88!GO:0043170;macromolecule metabolic process;2.92399254036165e-78!GO:0032991;macromolecular complex;4.39877018316715e-76!GO:0005515;protein binding;1.45408306517197e-73!GO:0030529;ribonucleoprotein complex;2.08917148977756e-72!GO:0005634;nucleus;6.08502634738814e-70!GO:0043233;organelle lumen;6.75678140739484e-65!GO:0031974;membrane-enclosed lumen;6.75678140739484e-65!GO:0003723;RNA binding;2.31471045180883e-63!GO:0044428;nuclear part;3.06680762519992e-61!GO:0005739;mitochondrion;6.36336893999743e-60!GO:0031090;organelle membrane;1.72451530398031e-48!GO:0019538;protein metabolic process;8.73353180458595e-48!GO:0016043;cellular component organization and biogenesis;7.33323747869444e-45!GO:0043283;biopolymer metabolic process;8.0129303819065e-45!GO:0005840;ribosome;8.0129303819065e-45!GO:0006412;translation;5.2708971667966e-44!GO:0044260;cellular macromolecule metabolic process;2.96422489856132e-43!GO:0010467;gene expression;9.8915131532253e-43!GO:0044267;cellular protein metabolic process;3.55301347067659e-42!GO:0015031;protein transport;3.05204446524355e-41!GO:0033036;macromolecule localization;3.35811885539885e-41!GO:0006396;RNA processing;6.4631932968503e-40!GO:0009058;biosynthetic process;6.48223135522189e-40!GO:0044429;mitochondrial part;1.19037895652217e-39!GO:0005829;cytosol;3.78032003460757e-39!GO:0003735;structural constituent of ribosome;1.24812552371929e-38!GO:0031981;nuclear lumen;2.1397341421565e-38!GO:0045184;establishment of protein localization;3.01592704417001e-38!GO:0008104;protein localization;5.80671268923869e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.26629281304997e-37!GO:0043234;protein complex;7.50174122147408e-37!GO:0044249;cellular biosynthetic process;2.21050934610608e-36!GO:0031967;organelle envelope;1.64747520916115e-35!GO:0009059;macromolecule biosynthetic process;2.28979343583529e-35!GO:0031975;envelope;2.82801475774655e-35!GO:0016071;mRNA metabolic process;1.2775372367118e-34!GO:0033279;ribosomal subunit;4.34581912381324e-34!GO:0008380;RNA splicing;2.19523850423571e-31!GO:0046907;intracellular transport;1.0185297845326e-30!GO:0006397;mRNA processing;7.36458607899726e-28!GO:0065003;macromolecular complex assembly;1.26354608545561e-27!GO:0006886;intracellular protein transport;7.68718603488951e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.37643807309272e-26!GO:0005740;mitochondrial envelope;9.11193375236556e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.05333302388112e-25!GO:0005654;nucleoplasm;6.94013777321205e-25!GO:0031966;mitochondrial membrane;2.03605644125364e-24!GO:0022607;cellular component assembly;2.20497230802402e-24!GO:0006996;organelle organization and biogenesis;2.42248672231155e-24!GO:0003676;nucleic acid binding;3.22634383860256e-24!GO:0019866;organelle inner membrane;7.9190964640344e-23!GO:0043228;non-membrane-bound organelle;1.87978279540811e-22!GO:0043232;intracellular non-membrane-bound organelle;1.87978279540811e-22!GO:0000166;nucleotide binding;1.60286252764531e-21!GO:0005743;mitochondrial inner membrane;2.44458146443697e-21!GO:0044451;nucleoplasm part;7.9821723730001e-21!GO:0016070;RNA metabolic process;1.0734577854793e-20!GO:0005681;spliceosome;1.35346300550026e-20!GO:0044445;cytosolic part;1.93443381473465e-20!GO:0008134;transcription factor binding;4.61053227689265e-20!GO:0051641;cellular localization;5.64210789210842e-20!GO:0051649;establishment of cellular localization;6.24139002923371e-20!GO:0012505;endomembrane system;8.19829691850934e-20!GO:0006457;protein folding;4.8568018737506e-19!GO:0006119;oxidative phosphorylation;5.85402761239797e-19!GO:0048770;pigment granule;1.53762282174702e-18!GO:0042470;melanosome;1.53762282174702e-18!GO:0005783;endoplasmic reticulum;2.27415356519248e-18!GO:0015935;small ribosomal subunit;3.92167822594212e-18!GO:0022618;protein-RNA complex assembly;1.70013651286405e-17!GO:0031980;mitochondrial lumen;2.02724962684784e-17!GO:0005759;mitochondrial matrix;2.02724962684784e-17!GO:0006512;ubiquitin cycle;2.64528741470408e-17!GO:0016874;ligase activity;2.68248607689617e-17!GO:0006259;DNA metabolic process;2.76747231127616e-17!GO:0005794;Golgi apparatus;3.46434797462613e-17!GO:0015934;large ribosomal subunit;5.53969466139204e-17!GO:0016462;pyrophosphatase activity;1.04646110292109e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.23253604643746e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.81540342384886e-16!GO:0051186;cofactor metabolic process;2.44616429448519e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;4.69764933331114e-16!GO:0017111;nucleoside-triphosphatase activity;5.53998342769858e-16!GO:0043285;biopolymer catabolic process;5.82154455435038e-16!GO:0044455;mitochondrial membrane part;5.83517502788855e-16!GO:0044265;cellular macromolecule catabolic process;8.18065603624027e-16!GO:0006511;ubiquitin-dependent protein catabolic process;9.32098615755473e-16!GO:0019941;modification-dependent protein catabolic process;9.49227874553954e-16!GO:0043632;modification-dependent macromolecule catabolic process;9.49227874553954e-16!GO:0044257;cellular protein catabolic process;1.35893698811769e-15!GO:0008135;translation factor activity, nucleic acid binding;1.76599132146339e-15!GO:0044432;endoplasmic reticulum part;4.27147905501393e-15!GO:0017076;purine nucleotide binding;4.36052334398642e-15!GO:0032553;ribonucleotide binding;2.42075929136964e-14!GO:0032555;purine ribonucleotide binding;2.42075929136964e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93482116000928e-14!GO:0007049;cell cycle;3.15765728026859e-14!GO:0048193;Golgi vesicle transport;3.9256735520556e-14!GO:0030163;protein catabolic process;4.00124802200468e-14!GO:0006605;protein targeting;4.1086880917156e-14!GO:0005730;nucleolus;4.1086880917156e-14!GO:0009057;macromolecule catabolic process;4.1086880917156e-14!GO:0005746;mitochondrial respiratory chain;4.75979450154578e-14!GO:0044248;cellular catabolic process;5.36831738277114e-14!GO:0000502;proteasome complex (sensu Eukaryota);6.89818579204677e-14!GO:0016192;vesicle-mediated transport;9.42616674568402e-14!GO:0043412;biopolymer modification;1.2113748325022e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.60924153607652e-13!GO:0003712;transcription cofactor activity;7.33702539830198e-13!GO:0006732;coenzyme metabolic process;1.20398660253889e-12!GO:0050794;regulation of cellular process;1.38714210505252e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.4117611278353e-12!GO:0005793;ER-Golgi intermediate compartment;2.23901670998366e-12!GO:0003743;translation initiation factor activity;2.83831028548292e-12!GO:0006366;transcription from RNA polymerase II promoter;2.99298412963107e-12!GO:0050136;NADH dehydrogenase (quinone) activity;3.05515662952893e-12!GO:0003954;NADH dehydrogenase activity;3.05515662952893e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.05515662952893e-12!GO:0006464;protein modification process;3.14789456920528e-12!GO:0051082;unfolded protein binding;3.73271979506622e-12!GO:0012501;programmed cell death;5.85087134928081e-12!GO:0005761;mitochondrial ribosome;6.1763981604433e-12!GO:0000313;organellar ribosome;6.1763981604433e-12!GO:0048523;negative regulation of cellular process;7.00300566185604e-12!GO:0006413;translational initiation;1.10794759398692e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.24852975392959e-11!GO:0006915;apoptosis;1.29560059376219e-11!GO:0030554;adenyl nucleotide binding;4.25373177623415e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;5.04009315515828e-11!GO:0000375;RNA splicing, via transesterification reactions;5.04009315515828e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.04009315515828e-11!GO:0008219;cell death;6.00276861528735e-11!GO:0016265;death;6.00276861528735e-11!GO:0042775;organelle ATP synthesis coupled electron transport;8.3498829142146e-11!GO:0042773;ATP synthesis coupled electron transport;8.3498829142146e-11!GO:0005524;ATP binding;1.01763515364679e-10!GO:0006446;regulation of translational initiation;1.08542157073291e-10!GO:0043687;post-translational protein modification;1.15204313236523e-10!GO:0005635;nuclear envelope;1.15321740691802e-10!GO:0016604;nuclear body;1.24444240407257e-10!GO:0022402;cell cycle process;1.47327910181558e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.47327910181558e-10!GO:0045271;respiratory chain complex I;1.47327910181558e-10!GO:0005747;mitochondrial respiratory chain complex I;1.47327910181558e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.54231390727457e-10!GO:0032559;adenyl ribonucleotide binding;1.54941281965194e-10!GO:0009055;electron carrier activity;1.76803511259273e-10!GO:0006974;response to DNA damage stimulus;2.46580013626771e-10!GO:0005789;endoplasmic reticulum membrane;3.18097976155774e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.38145081521859e-10!GO:0031965;nuclear membrane;4.03524172494385e-10!GO:0006913;nucleocytoplasmic transport;6.03599948368568e-10!GO:0048519;negative regulation of biological process;6.94245205168339e-10!GO:0008639;small protein conjugating enzyme activity;1.1313146202561e-09!GO:0051169;nuclear transport;1.27698829936979e-09!GO:0050789;regulation of biological process;1.65301207105276e-09!GO:0004842;ubiquitin-protein ligase activity;2.48988092820342e-09!GO:0042254;ribosome biogenesis and assembly;2.9873271645481e-09!GO:0019787;small conjugating protein ligase activity;3.10680807673202e-09!GO:0005768;endosome;3.94196153617399e-09!GO:0006163;purine nucleotide metabolic process;4.70372760448001e-09!GO:0008565;protein transporter activity;5.5708210988453e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.58256844960704e-09!GO:0009259;ribonucleotide metabolic process;7.49775195183913e-09!GO:0016607;nuclear speck;7.49775195183913e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.89336115068529e-09!GO:0006461;protein complex assembly;9.8085895622325e-09!GO:0009150;purine ribonucleotide metabolic process;1.18701377048039e-08!GO:0016491;oxidoreductase activity;1.24276568385734e-08!GO:0044453;nuclear membrane part;1.62122452331185e-08!GO:0009056;catabolic process;1.64592342389686e-08!GO:0045333;cellular respiration;2.19097236625509e-08!GO:0017038;protein import;2.20148048784809e-08!GO:0051246;regulation of protein metabolic process;2.30698611538227e-08!GO:0051188;cofactor biosynthetic process;2.33677680003021e-08!GO:0003924;GTPase activity;2.37738858924198e-08!GO:0051726;regulation of cell cycle;2.9239671984831e-08!GO:0006164;purine nucleotide biosynthetic process;3.27498605301336e-08!GO:0000074;regulation of progression through cell cycle;3.37248742265825e-08!GO:0009060;aerobic respiration;3.69980500755539e-08!GO:0051276;chromosome organization and biogenesis;3.7908800857327e-08!GO:0044431;Golgi apparatus part;4.05630290205909e-08!GO:0016881;acid-amino acid ligase activity;4.59673170175514e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.78746822942308e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.33583658942559e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.33583658942559e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.33583658942559e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.33583658942559e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;5.4294662660715e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.92275387909263e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.92275387909263e-08!GO:0006399;tRNA metabolic process;6.50318750261451e-08!GO:0016564;transcription repressor activity;7.00077915369284e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.80282087701719e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.95591592797783e-08!GO:0006281;DNA repair;8.77784033212291e-08!GO:0000278;mitotic cell cycle;1.0012711872366e-07!GO:0043038;amino acid activation;1.02544995927259e-07!GO:0006418;tRNA aminoacylation for protein translation;1.02544995927259e-07!GO:0043039;tRNA aminoacylation;1.02544995927259e-07!GO:0009141;nucleoside triphosphate metabolic process;1.09228756268102e-07!GO:0030120;vesicle coat;1.09320655830512e-07!GO:0030662;coated vesicle membrane;1.09320655830512e-07!GO:0009260;ribonucleotide biosynthetic process;1.25561686187009e-07!GO:0009719;response to endogenous stimulus;1.26705685007933e-07!GO:0015986;ATP synthesis coupled proton transport;1.67255435973516e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.67255435973516e-07!GO:0019829;cation-transporting ATPase activity;1.67341765088166e-07!GO:0006323;DNA packaging;1.83753506849908e-07!GO:0048475;coated membrane;1.89988730008754e-07!GO:0030117;membrane coat;1.89988730008754e-07!GO:0004386;helicase activity;2.03478896291844e-07!GO:0046034;ATP metabolic process;2.06678487486845e-07!GO:0006916;anti-apoptosis;2.28492954465503e-07!GO:0042623;ATPase activity, coupled;2.32784029172291e-07!GO:0019222;regulation of metabolic process;2.78991778202535e-07!GO:0016887;ATPase activity;3.19755397378449e-07!GO:0044440;endosomal part;3.2109252308475e-07!GO:0010008;endosome membrane;3.2109252308475e-07!GO:0003713;transcription coactivator activity;3.55455208932659e-07!GO:0005788;endoplasmic reticulum lumen;3.87169138972777e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.3751399296335e-07!GO:0031324;negative regulation of cellular metabolic process;4.90542810604016e-07!GO:0043566;structure-specific DNA binding;4.95183891783781e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.82678805650094e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.82678805650094e-07!GO:0045786;negative regulation of progression through cell cycle;6.06273259695868e-07!GO:0051187;cofactor catabolic process;6.17141812400593e-07!GO:0005525;GTP binding;6.2479031985956e-07!GO:0043069;negative regulation of programmed cell death;6.58876008847842e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.67726071110365e-07!GO:0042981;regulation of apoptosis;6.80051880587396e-07!GO:0006099;tricarboxylic acid cycle;7.03481962669271e-07!GO:0046356;acetyl-CoA catabolic process;7.03481962669271e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.07935848769319e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.11807952236179e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.11807952236179e-07!GO:0006091;generation of precursor metabolites and energy;7.62651203955423e-07!GO:0043066;negative regulation of apoptosis;7.79297475183467e-07!GO:0043067;regulation of programmed cell death;8.27895662728728e-07!GO:0005643;nuclear pore;9.85392476767047e-07!GO:0008026;ATP-dependent helicase activity;1.03129016488609e-06!GO:0009109;coenzyme catabolic process;1.11087495894379e-06!GO:0009108;coenzyme biosynthetic process;1.26219320184271e-06!GO:0016563;transcription activator activity;1.30184405802094e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.30395030326279e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.31490908082994e-06!GO:0005773;vacuole;1.42607052129437e-06!GO:0005667;transcription factor complex;1.70514826446578e-06!GO:0003714;transcription corepressor activity;1.91724147838261e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.94599117575086e-06!GO:0031988;membrane-bound vesicle;2.07375613681795e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.25387097621849e-06!GO:0006084;acetyl-CoA metabolic process;2.27896564347744e-06!GO:0051170;nuclear import;2.32075195758963e-06!GO:0006754;ATP biosynthetic process;2.35691798996365e-06!GO:0006753;nucleoside phosphate metabolic process;2.35691798996365e-06!GO:0000139;Golgi membrane;2.91228999039374e-06!GO:0000151;ubiquitin ligase complex;2.92862257178939e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.92862257178939e-06!GO:0006793;phosphorus metabolic process;2.96159311319178e-06!GO:0006796;phosphate metabolic process;2.96159311319178e-06!GO:0032446;protein modification by small protein conjugation;3.18172544922933e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.31332011060387e-06!GO:0050657;nucleic acid transport;3.42187035784725e-06!GO:0051236;establishment of RNA localization;3.42187035784725e-06!GO:0050658;RNA transport;3.42187035784725e-06!GO:0031982;vesicle;3.66184266499815e-06!GO:0006606;protein import into nucleus;3.6626437391004e-06!GO:0003697;single-stranded DNA binding;3.97142502742774e-06!GO:0009892;negative regulation of metabolic process;4.02469326416807e-06!GO:0031410;cytoplasmic vesicle;4.21359475318884e-06!GO:0016567;protein ubiquitination;4.239346172842e-06!GO:0006403;RNA localization;4.44286562896076e-06!GO:0005694;chromosome;5.43030319726712e-06!GO:0065002;intracellular protein transport across a membrane;5.64467267611373e-06!GO:0065007;biological regulation;6.0900301708657e-06!GO:0032561;guanyl ribonucleotide binding;6.43057047687464e-06!GO:0019001;guanyl nucleotide binding;6.43057047687464e-06!GO:0031252;leading edge;6.6601539501275e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.73297880253727e-06!GO:0000323;lytic vacuole;6.80874689498815e-06!GO:0005764;lysosome;6.80874689498815e-06!GO:0016481;negative regulation of transcription;7.20837896681869e-06!GO:0045259;proton-transporting ATP synthase complex;7.65886924164104e-06!GO:0005770;late endosome;7.66476793969713e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.93043764785933e-06!GO:0008654;phospholipid biosynthetic process;7.9484679838235e-06!GO:0016568;chromatin modification;8.57085122828232e-06!GO:0005798;Golgi-associated vesicle;9.58942786089095e-06!GO:0000245;spliceosome assembly;9.71079989325478e-06!GO:0046930;pore complex;9.86764581123237e-06!GO:0016853;isomerase activity;1.00475952813255e-05!GO:0006364;rRNA processing;1.08827161068825e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.14884676400798e-05!GO:0015630;microtubule cytoskeleton;1.23982218829656e-05!GO:0009117;nucleotide metabolic process;1.2409385361559e-05!GO:0065004;protein-DNA complex assembly;1.26608596950978e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.29911913931485e-05!GO:0006613;cotranslational protein targeting to membrane;1.36264458838313e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.63953804965756e-05!GO:0016740;transferase activity;1.68605754455938e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.9432217964372e-05!GO:0007005;mitochondrion organization and biogenesis;2.0012658616607e-05!GO:0016072;rRNA metabolic process;2.01274907612421e-05!GO:0016859;cis-trans isomerase activity;2.06800975328075e-05!GO:0006752;group transfer coenzyme metabolic process;2.56564788773981e-05!GO:0030133;transport vesicle;2.61083541335358e-05!GO:0016310;phosphorylation;3.09566077643607e-05!GO:0005813;centrosome;3.48329561995136e-05!GO:0008361;regulation of cell size;3.48329561995136e-05!GO:0022403;cell cycle phase;3.92623663108995e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.92674314543057e-05!GO:0019867;outer membrane;4.01047154919185e-05!GO:0045454;cell redox homeostasis;4.01264538744072e-05!GO:0019899;enzyme binding;4.40128783760618e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.51760460309494e-05!GO:0016049;cell growth;4.9257720396317e-05!GO:0004298;threonine endopeptidase activity;5.10608238770418e-05!GO:0031968;organelle outer membrane;5.28187840625043e-05!GO:0006260;DNA replication;5.32679091506008e-05!GO:0051427;hormone receptor binding;5.63680416696179e-05!GO:0030867;rough endoplasmic reticulum membrane;6.54194939961074e-05!GO:0007243;protein kinase cascade;6.54424251139804e-05!GO:0051028;mRNA transport;6.95483861581459e-05!GO:0031323;regulation of cellular metabolic process;7.54187196059345e-05!GO:0016787;hydrolase activity;7.91975750180012e-05!GO:0019843;rRNA binding;8.57988734714691e-05!GO:0051301;cell division;8.62648563884518e-05!GO:0005769;early endosome;8.82648945280299e-05!GO:0005762;mitochondrial large ribosomal subunit;8.82648945280299e-05!GO:0000315;organellar large ribosomal subunit;8.82648945280299e-05!GO:0016126;sterol biosynthetic process;8.90986562868391e-05!GO:0006333;chromatin assembly or disassembly;9.42442879456846e-05!GO:0000087;M phase of mitotic cell cycle;9.59782127974583e-05!GO:0003724;RNA helicase activity;0.000101417425620518!GO:0044427;chromosomal part;0.000104319893672546!GO:0048522;positive regulation of cellular process;0.000104330298315068!GO:0005815;microtubule organizing center;0.000117816552487468!GO:0035257;nuclear hormone receptor binding;0.000118190913919009!GO:0043021;ribonucleoprotein binding;0.000124918763995178!GO:0005905;coated pit;0.000126541128512642!GO:0051789;response to protein stimulus;0.000127391497264593!GO:0006986;response to unfolded protein;0.000127391497264593!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000130149128731!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000135573292605834!GO:0007067;mitosis;0.000135573292605834!GO:0005741;mitochondrial outer membrane;0.000156386553726476!GO:0005048;signal sequence binding;0.000156386553726476!GO:0007264;small GTPase mediated signal transduction;0.000180428423856552!GO:0006350;transcription;0.000205147392360239!GO:0043623;cellular protein complex assembly;0.000229899267109194!GO:0001558;regulation of cell growth;0.000234406322829594!GO:0005791;rough endoplasmic reticulum;0.000239541063720673!GO:0045893;positive regulation of transcription, DNA-dependent;0.000239681999743409!GO:0008610;lipid biosynthetic process;0.000247386243527019!GO:0050662;coenzyme binding;0.000270663159390912!GO:0016779;nucleotidyltransferase activity;0.000307468768250331!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000325596084900773!GO:0006612;protein targeting to membrane;0.000331289428566983!GO:0033116;ER-Golgi intermediate compartment membrane;0.000357414345152361!GO:0045941;positive regulation of transcription;0.000364312502139328!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000399010646853995!GO:0000785;chromatin;0.000407732120039602!GO:0019752;carboxylic acid metabolic process;0.000410648085420882!GO:0046474;glycerophospholipid biosynthetic process;0.000440041305452271!GO:0030029;actin filament-based process;0.0004493496608836!GO:0006082;organic acid metabolic process;0.000486830451086911!GO:0005885;Arp2/3 protein complex;0.000524922073497896!GO:0010468;regulation of gene expression;0.00057414127311633!GO:0006402;mRNA catabolic process;0.000600683821025864!GO:0030663;COPI coated vesicle membrane;0.000647231002715066!GO:0030126;COPI vesicle coat;0.000647231002715066!GO:0016044;membrane organization and biogenesis;0.000647231002715066!GO:0003729;mRNA binding;0.000647231002715066!GO:0008250;oligosaccharyl transferase complex;0.000711885617425484!GO:0045892;negative regulation of transcription, DNA-dependent;0.000730264293089371!GO:0006695;cholesterol biosynthetic process;0.000766365686269112!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000834143609676718!GO:0003690;double-stranded DNA binding;0.000848264000044389!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000875539865248853!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000908466796204274!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000993374962396307!GO:0008092;cytoskeletal protein binding;0.00100718186630474!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00106417809647234!GO:0004576;oligosaccharyl transferase activity;0.00106862744912632!GO:0043488;regulation of mRNA stability;0.00106862744912632!GO:0043487;regulation of RNA stability;0.00106862744912632!GO:0007050;cell cycle arrest;0.00108399933135819!GO:0051287;NAD binding;0.0010925265202089!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0010925265202089!GO:0004177;aminopeptidase activity;0.00110516553909715!GO:0007010;cytoskeleton organization and biogenesis;0.00110865124715887!GO:0000314;organellar small ribosomal subunit;0.00110958090119897!GO:0005763;mitochondrial small ribosomal subunit;0.00110958090119897!GO:0051329;interphase of mitotic cell cycle;0.0011482611643382!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00116387840946112!GO:0051920;peroxiredoxin activity;0.00118626985722067!GO:0048037;cofactor binding;0.00119709347296413!GO:0030132;clathrin coat of coated pit;0.00121225553713667!GO:0006414;translational elongation;0.00124476651150269!GO:0030137;COPI-coated vesicle;0.00137645971159269!GO:0006891;intra-Golgi vesicle-mediated transport;0.00139011364593105!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00139011364593105!GO:0051252;regulation of RNA metabolic process;0.00141181775203919!GO:0046467;membrane lipid biosynthetic process;0.00144155416798617!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00158023778736723!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00158023778736723!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00158023778736723!GO:0005096;GTPase activator activity;0.00163152143460567!GO:0042802;identical protein binding;0.00163152143460567!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00163179156794786!GO:0016363;nuclear matrix;0.00173965209545759!GO:0008186;RNA-dependent ATPase activity;0.00209706642772878!GO:0030521;androgen receptor signaling pathway;0.00212660936309978!GO:0008047;enzyme activator activity;0.00217334973370962!GO:0045045;secretory pathway;0.00228998287496687!GO:0008154;actin polymerization and/or depolymerization;0.00229125984368426!GO:0048471;perinuclear region of cytoplasm;0.00232839557277537!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00234149855025918!GO:0044262;cellular carbohydrate metabolic process;0.0023988881229955!GO:0009165;nucleotide biosynthetic process;0.0023988881229955!GO:0035258;steroid hormone receptor binding;0.00247590637611349!GO:0043284;biopolymer biosynthetic process;0.00251331364509537!GO:0018196;peptidyl-asparagine modification;0.00251331364509537!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00251331364509537!GO:0031072;heat shock protein binding;0.00257673048193916!GO:0006979;response to oxidative stress;0.00259163954883073!GO:0000279;M phase;0.00259327552505534!GO:0030027;lamellipodium;0.00271074299210204!GO:0009967;positive regulation of signal transduction;0.00289718000415918!GO:0048500;signal recognition particle;0.00291360425767797!GO:0051325;interphase;0.00322193794152638!GO:0000059;protein import into nucleus, docking;0.00326988479908573!GO:0048468;cell development;0.00333767662685589!GO:0051168;nuclear export;0.00346240773992025!GO:0051128;regulation of cellular component organization and biogenesis;0.00358152945623426!GO:0003899;DNA-directed RNA polymerase activity;0.00365599821546836!GO:0030118;clathrin coat;0.00366486951359274!GO:0048518;positive regulation of biological process;0.0037569563749905!GO:0030134;ER to Golgi transport vesicle;0.00385342649732974!GO:0065009;regulation of a molecular function;0.00390923972987495!GO:0008139;nuclear localization sequence binding;0.00395273716857106!GO:0017166;vinculin binding;0.00397033159876282!GO:0046914;transition metal ion binding;0.00402459762934233!GO:0006650;glycerophospholipid metabolic process;0.00415501083897245!GO:0046489;phosphoinositide biosynthetic process;0.00415501083897245!GO:0005100;Rho GTPase activator activity;0.00423492492651593!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00423492492651593!GO:0006352;transcription initiation;0.0045957617286256!GO:0003702;RNA polymerase II transcription factor activity;0.00463014835496072!GO:0004674;protein serine/threonine kinase activity;0.00471889702777183!GO:0006401;RNA catabolic process;0.00475837702599654!GO:0030127;COPII vesicle coat;0.00479817363244364!GO:0012507;ER to Golgi transport vesicle membrane;0.00479817363244364!GO:0040008;regulation of growth;0.004941521869143!GO:0030658;transport vesicle membrane;0.00513254944068219!GO:0033673;negative regulation of kinase activity;0.00513970698632092!GO:0006469;negative regulation of protein kinase activity;0.00513970698632092!GO:0030518;steroid hormone receptor signaling pathway;0.00518348526645937!GO:0030041;actin filament polymerization;0.00522019650989537!GO:0006334;nucleosome assembly;0.00532410900131621!GO:0004004;ATP-dependent RNA helicase activity;0.00545360339086717!GO:0032774;RNA biosynthetic process;0.00572864627251566!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.005805694449546!GO:0045047;protein targeting to ER;0.005805694449546!GO:0031901;early endosome membrane;0.00594943165834659!GO:0006351;transcription, DNA-dependent;0.00595351636349573!GO:0000049;tRNA binding;0.00627348685107024!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00637502528312088!GO:0015399;primary active transmembrane transporter activity;0.00637502528312088!GO:0008286;insulin receptor signaling pathway;0.0063801001116638!GO:0043681;protein import into mitochondrion;0.00649723028799347!GO:0051540;metal cluster binding;0.00649723028799347!GO:0051536;iron-sulfur cluster binding;0.00649723028799347!GO:0031902;late endosome membrane;0.00663457187333643!GO:0006383;transcription from RNA polymerase III promoter;0.006730020923674!GO:0016197;endosome transport;0.00706532900407598!GO:0031625;ubiquitin protein ligase binding;0.00706532900407598!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00727832146292892!GO:0015992;proton transport;0.00737415371994121!GO:0006818;hydrogen transport;0.00742579677502506!GO:0048487;beta-tubulin binding;0.00742579677502506!GO:0051348;negative regulation of transferase activity;0.00745799245858021!GO:0006289;nucleotide-excision repair;0.00757106302623528!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0077369657710021!GO:0030880;RNA polymerase complex;0.00774759081078009!GO:0022890;inorganic cation transmembrane transporter activity;0.00783114266113694!GO:0045449;regulation of transcription;0.00785501392737712!GO:0031497;chromatin assembly;0.0080872045146156!GO:0008312;7S RNA binding;0.00809992489717833!GO:0001726;ruffle;0.00815669100796899!GO:0016408;C-acyltransferase activity;0.00831845178718799!GO:0003682;chromatin binding;0.00838275494813458!GO:0008180;signalosome;0.00844251552452118!GO:0016251;general RNA polymerase II transcription factor activity;0.00844492723775111!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00893721081468945!GO:0006892;post-Golgi vesicle-mediated transport;0.00920092313135942!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00930261493658806!GO:0006118;electron transport;0.00934264037125409!GO:0030119;AP-type membrane coat adaptor complex;0.00953160608168103!GO:0003746;translation elongation factor activity;0.00956473074882227!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00973570007757604!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00973570007757604!GO:0005819;spindle;0.00999847885750143!GO:0046483;heterocycle metabolic process;0.00999847885750143!GO:0005869;dynactin complex;0.0106041573476759!GO:0005774;vacuolar membrane;0.0107769113559649!GO:0007006;mitochondrial membrane organization and biogenesis;0.0109652009325674!GO:0006509;membrane protein ectodomain proteolysis;0.0111735703343533!GO:0033619;membrane protein proteolysis;0.0111735703343533!GO:0050681;androgen receptor binding;0.0112281039840031!GO:0006740;NADPH regeneration;0.0113087923523568!GO:0006098;pentose-phosphate shunt;0.0113087923523568!GO:0006607;NLS-bearing substrate import into nucleus;0.0116724931230263!GO:0015631;tubulin binding;0.0117709505629977!GO:0006520;amino acid metabolic process;0.011859575525427!GO:0032984;macromolecular complex disassembly;0.0118703535372189!GO:0051539;4 iron, 4 sulfur cluster binding;0.0118703535372189!GO:0006595;polyamine metabolic process;0.0118703535372189!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0121530577249601!GO:0015002;heme-copper terminal oxidase activity;0.0121530577249601!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0121530577249601!GO:0004129;cytochrome-c oxidase activity;0.0121530577249601!GO:0000209;protein polyubiquitination;0.0128612238486186!GO:0006778;porphyrin metabolic process;0.0133897100435312!GO:0033013;tetrapyrrole metabolic process;0.0133897100435312!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0134798394278053!GO:0000428;DNA-directed RNA polymerase complex;0.0134798394278053!GO:0043022;ribosome binding;0.0137698957437414!GO:0030176;integral to endoplasmic reticulum membrane;0.0139543060075142!GO:0030660;Golgi-associated vesicle membrane;0.0140029835374498!GO:0005099;Ras GTPase activator activity;0.0142020833751861!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0147272710199176!GO:0005669;transcription factor TFIID complex;0.0149765693370126!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0149765693370126!GO:0006984;ER-nuclear signaling pathway;0.0152850028458087!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0153666162507996!GO:0033043;regulation of organelle organization and biogenesis;0.0153666162507996!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0159673462099641!GO:0000339;RNA cap binding;0.0160998730334108!GO:0007034;vacuolar transport;0.0162268074161135!GO:0030131;clathrin adaptor complex;0.016488240785076!GO:0000096;sulfur amino acid metabolic process;0.0166004185435651!GO:0022408;negative regulation of cell-cell adhesion;0.0168436597230361!GO:0035035;histone acetyltransferase binding;0.0169144521780595!GO:0051101;regulation of DNA binding;0.0170257710541116!GO:0003711;transcription elongation regulator activity;0.0173012393531613!GO:0006497;protein amino acid lipidation;0.0178016792200195!GO:0033559;unsaturated fatty acid metabolic process;0.0179485155489494!GO:0006636;unsaturated fatty acid biosynthetic process;0.0179485155489494!GO:0006693;prostaglandin metabolic process;0.0184080482757915!GO:0006692;prostanoid metabolic process;0.0184080482757915!GO:0000082;G1/S transition of mitotic cell cycle;0.0184618191230665!GO:0051059;NF-kappaB binding;0.0184618191230665!GO:0006733;oxidoreduction coenzyme metabolic process;0.0184961855027559!GO:0042158;lipoprotein biosynthetic process;0.018612645807755!GO:0006626;protein targeting to mitochondrion;0.0187850132577891!GO:0045792;negative regulation of cell size;0.0188086371411153!GO:0030145;manganese ion binding;0.0188885409758571!GO:0030659;cytoplasmic vesicle membrane;0.0190474103344674!GO:0006635;fatty acid beta-oxidation;0.019140289094426!GO:0051087;chaperone binding;0.0198904886645338!GO:0006897;endocytosis;0.0198904886645338!GO:0010324;membrane invagination;0.0198904886645338!GO:0006839;mitochondrial transport;0.0203252255426934!GO:0005832;chaperonin-containing T-complex;0.020348414474895!GO:0008270;zinc ion binding;0.0204921102518173!GO:0043492;ATPase activity, coupled to movement of substances;0.0205215300994932!GO:0016860;intramolecular oxidoreductase activity;0.0212046780102113!GO:0005684;U2-dependent spliceosome;0.0212046780102113!GO:0006354;RNA elongation;0.0213024243132751!GO:0005637;nuclear inner membrane;0.021400001850211!GO:0030522;intracellular receptor-mediated signaling pathway;0.0216258284206428!GO:0005765;lysosomal membrane;0.0218705407006655!GO:0030308;negative regulation of cell growth;0.0221426535281491!GO:0008632;apoptotic program;0.0224393400117398!GO:0043241;protein complex disassembly;0.0226677643637308!GO:0008652;amino acid biosynthetic process;0.0230752232593062!GO:0006769;nicotinamide metabolic process;0.0232229982964305!GO:0050811;GABA receptor binding;0.0232321990748377!GO:0031529;ruffle organization and biogenesis;0.0234753673547577!GO:0032940;secretion by cell;0.0236901657988183!GO:0006376;mRNA splice site selection;0.0237476427065534!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0237476427065534!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0241161721780123!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0249487767930874!GO:0030384;phosphoinositide metabolic process;0.0251650621348586!GO:0043624;cellular protein complex disassembly;0.0255198016289115!GO:0044437;vacuolar part;0.0257581712709403!GO:0007040;lysosome organization and biogenesis;0.0260171868994286!GO:0003756;protein disulfide isomerase activity;0.0260245693176328!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0260245693176328!GO:0006767;water-soluble vitamin metabolic process;0.0260245693176328!GO:0007265;Ras protein signal transduction;0.0261686237073147!GO:0045334;clathrin-coated endocytic vesicle;0.0263550588591025!GO:0003684;damaged DNA binding;0.0264158706086909!GO:0009966;regulation of signal transduction;0.026501753506077!GO:0001953;negative regulation of cell-matrix adhesion;0.0267938899678614!GO:0008629;induction of apoptosis by intracellular signals;0.0271321342580933!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0272204818811154!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0272204818811154!GO:0007242;intracellular signaling cascade;0.0272410921931566!GO:0016791;phosphoric monoester hydrolase activity;0.0272922364508959!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0276183790587796!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0276703941839905!GO:0004721;phosphoprotein phosphatase activity;0.0277739499778109!GO:0005862;muscle thin filament tropomyosin;0.0280716132766833!GO:0006739;NADP metabolic process;0.0280716132766833!GO:0006950;response to stress;0.0286962534806866!GO:0044433;cytoplasmic vesicle part;0.0287038041611542!GO:0016407;acetyltransferase activity;0.0288548045639167!GO:0030125;clathrin vesicle coat;0.0295121243597852!GO:0030665;clathrin coated vesicle membrane;0.0295121243597852!GO:0030865;cortical cytoskeleton organization and biogenesis;0.030123855217004!GO:0006779;porphyrin biosynthetic process;0.0305312729238964!GO:0033014;tetrapyrrole biosynthetic process;0.0305312729238964!GO:0006417;regulation of translation;0.0308707436002577!GO:0042168;heme metabolic process;0.030933661618508!GO:0006506;GPI anchor biosynthetic process;0.0309872051279641!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0310316903950713!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0311848444009788!GO:0046426;negative regulation of JAK-STAT cascade;0.0313182932453509!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0313927788067067!GO:0006338;chromatin remodeling;0.0313927788067067!GO:0046870;cadmium ion binding;0.0313983324065392!GO:0046983;protein dimerization activity;0.0314231053978918!GO:0000075;cell cycle checkpoint;0.0314403966612326!GO:0008097;5S rRNA binding;0.0316400435149496!GO:0008033;tRNA processing;0.0321612592577848!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0333115852636197!GO:0016125;sterol metabolic process;0.0335481442567616!GO:0005874;microtubule;0.033616522454173!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0342712745705378!GO:0008168;methyltransferase activity;0.0357781442836671!GO:0019362;pyridine nucleotide metabolic process;0.0359468315084191!GO:0006505;GPI anchor metabolic process;0.0370388654978949!GO:0044452;nucleolar part;0.0374460106233532!GO:0016584;nucleosome positioning;0.037888989496498!GO:0006066;alcohol metabolic process;0.037997914544022!GO:0007033;vacuole organization and biogenesis;0.0391635544131201!GO:0030833;regulation of actin filament polymerization;0.0395700719369943!GO:0006643;membrane lipid metabolic process;0.0396218093746386!GO:0004722;protein serine/threonine phosphatase activity;0.0398059009060091!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0402469778110145!GO:0016741;transferase activity, transferring one-carbon groups;0.0404401851210694!GO:0030508;thiol-disulfide exchange intermediate activity;0.040783556631207!GO:0009081;branched chain family amino acid metabolic process;0.0408288143529174!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.041054841656209!GO:0006611;protein export from nucleus;0.0416137383057844!GO:0008022;protein C-terminus binding;0.0416614707173807!GO:0030128;clathrin coat of endocytic vesicle;0.0418776228420826!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0418776228420826!GO:0030122;AP-2 adaptor complex;0.0418776228420826!GO:0031371;ubiquitin conjugating enzyme complex;0.0418776228420826!GO:0012506;vesicle membrane;0.0419953264635921!GO:0000287;magnesium ion binding;0.0424119806369723!GO:0008234;cysteine-type peptidase activity;0.0427051460335041!GO:0050790;regulation of catalytic activity;0.042732803768448!GO:0030503;regulation of cell redox homeostasis;0.0427824166692348!GO:0030911;TPR domain binding;0.0427824166692348!GO:0051098;regulation of binding;0.0431117057957473!GO:0000118;histone deacetylase complex;0.0432124373966549!GO:0017134;fibroblast growth factor binding;0.0432943363012768!GO:0007041;lysosomal transport;0.0432943363012768!GO:0031418;L-ascorbic acid binding;0.0437357733519108!GO:0043065;positive regulation of apoptosis;0.0438564002614851!GO:0043087;regulation of GTPase activity;0.0438564002614851!GO:0005581;collagen;0.0438955807757869!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0438955807757869!GO:0030984;kininogen binding;0.0445237805916807!GO:0004213;cathepsin B activity;0.0445237805916807!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0445382395069749!GO:0032906;transforming growth factor-beta2 production;0.0449907050759386!GO:0032909;regulation of transforming growth factor-beta2 production;0.0449907050759386!GO:0045926;negative regulation of growth;0.0450586794727397!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0450586794727397!GO:0006261;DNA-dependent DNA replication;0.0451374345080035!GO:0006355;regulation of transcription, DNA-dependent;0.0453036647745346!GO:0007004;telomere maintenance via telomerase;0.0453445614932879!GO:0007030;Golgi organization and biogenesis;0.0453973269554607!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0458963162441787!GO:0046813;virion attachment, binding of host cell surface receptor;0.0458963162441787!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0458963162441787!GO:0005784;translocon complex;0.0461898583312254!GO:0006644;phospholipid metabolic process;0.0462895850868918!GO:0030032;lamellipodium biogenesis;0.0465281293535631!GO:0044255;cellular lipid metabolic process;0.0465533403085827!GO:0003678;DNA helicase activity;0.0466363896145667!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.046695302186795!GO:0031272;regulation of pseudopodium formation;0.0470626658527369!GO:0031269;pseudopodium formation;0.0470626658527369!GO:0031344;regulation of cell projection organization and biogenesis;0.0470626658527369!GO:0031268;pseudopodium organization and biogenesis;0.0470626658527369!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0470626658527369!GO:0031274;positive regulation of pseudopodium formation;0.0470626658527369!GO:0004860;protein kinase inhibitor activity;0.0473109388887722!GO:0043130;ubiquitin binding;0.0473246875638201!GO:0032182;small conjugating protein binding;0.0473246875638201!GO:0031124;mRNA 3'-end processing;0.0473352445126676!GO:0009893;positive regulation of metabolic process;0.0473352445126676!GO:0031461;cullin-RING ubiquitin ligase complex;0.0480497186561124!GO:0001952;regulation of cell-matrix adhesion;0.0483951587056999!GO:0006519;amino acid and derivative metabolic process;0.0490828111721349!GO:0043068;positive regulation of programmed cell death;0.0490828111721349
|sample_id=11394
|sample_id=11394
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=gum
|sample_tissue=gum
|top_motifs=ZNF238:2.04479909951;NFIX:1.43506457913;TFAP4:1.37495569655;HES1:1.30513304233;NFATC1..3:1.02253140214;MTF1:1.01187643277;TFCP2:1.00283636277;PAX5:0.997102890892;SP1:0.971616716217;EBF1:0.958050999368;PATZ1:0.936912228629;GZF1:0.898860307659;TFAP2{A,C}:0.896307337767;GTF2A1,2:0.889839123551;MAZ:0.841523307569;TLX1..3_NFIC{dimer}:0.825542005071;AR:0.795440924407;GFI1B:0.771888926523;STAT1,3:0.755582523016;RXR{A,B,G}:0.74739323155;PDX1:0.73193891421;FOXO1,3,4:0.72445185994;bHLH_family:0.70617951735;ZNF423:0.686610992034;GTF2I:0.677817667696;NR3C1:0.667083694158;EN1,2:0.657534315774;NKX2-2,8:0.651711873217;MZF1:0.638492257218;TFDP1:0.585334624573;CEBPA,B_DDIT3:0.571170553405;MYBL2:0.550279001923;NKX2-1,4:0.535697920552;TFAP2B:0.532933749014;EGR1..3:0.525200011455;TOPORS:0.514021189633;HIC1:0.495729187847;TP53:0.469307777217;MYFfamily:0.466955327294;NFE2L2:0.45935457027;MED-1{core}:0.448127798775;TEAD1:0.434907642873;ZIC1..3:0.425995586015;ALX4:0.421594568045;XCPE1{core}:0.395710555556;GLI1..3:0.39553092347;HAND1,2:0.357450343074;AHR_ARNT_ARNT2:0.341295658906;MTE{core}:0.339475589812;YY1:0.321695160643;NFE2:0.320895851105;SOX5:0.319174127204;ATF6:0.313014132487;SREBF1,2:0.306465178973;HLF:0.298111386001;ZBTB6:0.297967338097;RBPJ:0.297616796106;UFEwm:0.29562485034;ESR1:0.295549274355;XBP1:0.293093313494;SOX17:0.277662205791;HOX{A6,A7,B6,B7}:0.275019306406;TBX4,5:0.272244704937;TGIF1:0.265097437091;ZFP161:0.249836635287;BACH2:0.23102843999;HNF4A_NR2F1,2:0.217747711174;NHLH1,2:0.208934196821;LHX3,4:0.199139782909;GFI1:0.193059918847;AIRE:0.149263172856;STAT5{A,B}:0.141798994279;SPZ1:0.126740998417;FOSL2:0.125881880073;ZNF143:0.124401294959;PRRX1,2:0.124142014633;ZNF148:0.12386120102;NR1H4:0.113010564317;PRDM1:0.111996537598;TAL1_TCF{3,4,12}:0.110537944349;FOX{F1,F2,J1}:0.10233344199;KLF4:0.0958684255563;FOXD3:0.0906975865546;NANOG{mouse}:0.0822092131102;FOX{I1,J2}:0.0770381188077;POU6F1:0.0707320560811;HOX{A5,B5}:0.0694448888463;ADNP_IRX_SIX_ZHX:0.0664022678675;ESRRA:0.0653076704845;NKX6-1,2:0.0617967190497;NKX3-1:0.0565108538223;HIF1A:0.0403424195004;MAFB:0.0263699704393;NRF1:0.0184627149933;HOX{A4,D4}:0.00548098462158;FOS_FOS{B,L1}_JUN{B,D}:-0.0141447479329;STAT2,4,6:-0.0377338891558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0408125117345;IRF1,2:-0.0470650983735;RORA:-0.0668170191745;HNF1A:-0.0698252648896;TBP:-0.0788865670713;RREB1:-0.096427711414;RFX1:-0.0975087778036;IKZF1:-0.10652264037;CREB1:-0.113506718115;REST:-0.114649987558;FOXN1:-0.124519766471;NFE2L1:-0.132376638241;MYB:-0.136869106429;TEF:-0.142791829987;PAX1,9:-0.144280235225;ATF4:-0.153044879573;ATF5_CREB3:-0.155245659322;PAX6:-0.165824458763;FOXA2:-0.182898843034;IRF7:-0.193359584483;FOX{D1,D2}:-0.204268821417;PAX4:-0.211196802638;GCM1,2:-0.21264551821;ARID5B:-0.220484810841;POU3F1..4:-0.228445229698;RFX2..5_RFXANK_RFXAP:-0.230197962227;NFY{A,B,C}:-0.255842988367;BPTF:-0.298340077302;HMX1:-0.300360856645;NANOG:-0.30548580413;NFIL3:-0.309149412912;ONECUT1,2:-0.315807148082;FOXQ1:-0.316451515788;MEF2{A,B,C,D}:-0.323606951002;ELK1,4_GABP{A,B1}:-0.337589178685;ALX1:-0.338552327501;HMGA1,2:-0.344199082365;SRF:-0.350265231954;PAX3,7:-0.354317464078;PPARG:-0.35489404143;JUN:-0.357457186219;GATA6:-0.379240999562;EVI1:-0.384417765278;BREu{core}:-0.386136373078;FOXL1:-0.390547484031;LEF1_TCF7_TCF7L1,2:-0.401887049267;NFKB1_REL_RELA:-0.419936015719;GATA4:-0.421901332574;DMAP1_NCOR{1,2}_SMARC:-0.423766812158;TLX2:-0.432984139047;RUNX1..3:-0.436948167254;CUX2:-0.454647383376;SMAD1..7,9:-0.467467939505;ETS1,2:-0.480807619141;SPI1:-0.484120614605;CRX:-0.501047285165;RXRA_VDR{dimer}:-0.504369780059;CDX1,2,4:-0.506531950066;FOXM1:-0.511464742085;ELF1,2,4:-0.526212445929;SPIB:-0.52793583923;ZBTB16:-0.53875551117;NKX3-2:-0.55681619852;NR6A1:-0.57189316644;PBX1:-0.585267479581;HSF1,2:-0.60249614287;NKX2-3_NKX2-5:-0.648781520026;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.66091120771;PAX2:-0.668721454537;MYOD1:-0.678472052481;POU5F1:-0.729614993937;FOXP3:-0.73005402293;FOXP1:-0.744891337066;E2F1..5:-0.750786658034;POU2F1..3:-0.754814278915;HOXA9_MEIS1:-0.759209922806;DBP:-0.761162627173;SOX2:-0.781215083653;HBP1_HMGB_SSRP1_UBTF:-0.782138039003;LMO2:-0.796508749777;ZNF384:-0.81360670685;ATF2:-0.817083544021;NR5A1,2:-0.818037290096;CDC5L:-0.818548092918;PAX8:-0.850836589049;T:-0.875660942566;OCT4_SOX2{dimer}:-0.897738528282;SNAI1..3:-0.91449216364;POU1F1:-0.928992178928;SOX{8,9,10}:-0.953283875875;ZEB1:-0.974078494396;PITX1..3:-1.01669414853;VSX1,2:-1.22706509923;IKZF2:-1.2960729425;EP300:-1.30427070852
|top_motifs=ZNF238:2.04479909951;NFIX:1.43506457913;TFAP4:1.37495569655;HES1:1.30513304233;NFATC1..3:1.02253140214;MTF1:1.01187643277;TFCP2:1.00283636277;PAX5:0.997102890892;SP1:0.971616716217;EBF1:0.958050999368;PATZ1:0.936912228629;GZF1:0.898860307659;TFAP2{A,C}:0.896307337767;GTF2A1,2:0.889839123551;MAZ:0.841523307569;TLX1..3_NFIC{dimer}:0.825542005071;AR:0.795440924407;GFI1B:0.771888926523;STAT1,3:0.755582523016;RXR{A,B,G}:0.74739323155;PDX1:0.73193891421;FOXO1,3,4:0.72445185994;bHLH_family:0.70617951735;ZNF423:0.686610992034;GTF2I:0.677817667696;NR3C1:0.667083694158;EN1,2:0.657534315774;NKX2-2,8:0.651711873217;MZF1:0.638492257218;TFDP1:0.585334624573;CEBPA,B_DDIT3:0.571170553405;MYBL2:0.550279001923;NKX2-1,4:0.535697920552;TFAP2B:0.532933749014;EGR1..3:0.525200011455;TOPORS:0.514021189633;HIC1:0.495729187847;TP53:0.469307777217;MYFfamily:0.466955327294;NFE2L2:0.45935457027;MED-1{core}:0.448127798775;TEAD1:0.434907642873;ZIC1..3:0.425995586015;ALX4:0.421594568045;XCPE1{core}:0.395710555556;GLI1..3:0.39553092347;HAND1,2:0.357450343074;AHR_ARNT_ARNT2:0.341295658906;MTE{core}:0.339475589812;YY1:0.321695160643;NFE2:0.320895851105;SOX5:0.319174127204;ATF6:0.313014132487;SREBF1,2:0.306465178973;HLF:0.298111386001;ZBTB6:0.297967338097;RBPJ:0.297616796106;UFEwm:0.29562485034;ESR1:0.295549274355;XBP1:0.293093313494;SOX17:0.277662205791;HOX{A6,A7,B6,B7}:0.275019306406;TBX4,5:0.272244704937;TGIF1:0.265097437091;ZFP161:0.249836635287;BACH2:0.23102843999;HNF4A_NR2F1,2:0.217747711174;NHLH1,2:0.208934196821;LHX3,4:0.199139782909;GFI1:0.193059918847;AIRE:0.149263172856;STAT5{A,B}:0.141798994279;SPZ1:0.126740998417;FOSL2:0.125881880073;ZNF143:0.124401294959;PRRX1,2:0.124142014633;ZNF148:0.12386120102;NR1H4:0.113010564317;PRDM1:0.111996537598;TAL1_TCF{3,4,12}:0.110537944349;FOX{F1,F2,J1}:0.10233344199;KLF4:0.0958684255563;FOXD3:0.0906975865546;NANOG{mouse}:0.0822092131102;FOX{I1,J2}:0.0770381188077;POU6F1:0.0707320560811;HOX{A5,B5}:0.0694448888463;ADNP_IRX_SIX_ZHX:0.0664022678675;ESRRA:0.0653076704845;NKX6-1,2:0.0617967190497;NKX3-1:0.0565108538223;HIF1A:0.0403424195004;MAFB:0.0263699704393;NRF1:0.0184627149933;HOX{A4,D4}:0.00548098462158;FOS_FOS{B,L1}_JUN{B,D}:-0.0141447479329;STAT2,4,6:-0.0377338891558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0408125117345;IRF1,2:-0.0470650983735;RORA:-0.0668170191745;HNF1A:-0.0698252648896;TBP:-0.0788865670713;RREB1:-0.096427711414;RFX1:-0.0975087778036;IKZF1:-0.10652264037;CREB1:-0.113506718115;REST:-0.114649987558;FOXN1:-0.124519766471;NFE2L1:-0.132376638241;MYB:-0.136869106429;TEF:-0.142791829987;PAX1,9:-0.144280235225;ATF4:-0.153044879573;ATF5_CREB3:-0.155245659322;PAX6:-0.165824458763;FOXA2:-0.182898843034;IRF7:-0.193359584483;FOX{D1,D2}:-0.204268821417;PAX4:-0.211196802638;GCM1,2:-0.21264551821;ARID5B:-0.220484810841;POU3F1..4:-0.228445229698;RFX2..5_RFXANK_RFXAP:-0.230197962227;NFY{A,B,C}:-0.255842988367;BPTF:-0.298340077302;HMX1:-0.300360856645;NANOG:-0.30548580413;NFIL3:-0.309149412912;ONECUT1,2:-0.315807148082;FOXQ1:-0.316451515788;MEF2{A,B,C,D}:-0.323606951002;ELK1,4_GABP{A,B1}:-0.337589178685;ALX1:-0.338552327501;HMGA1,2:-0.344199082365;SRF:-0.350265231954;PAX3,7:-0.354317464078;PPARG:-0.35489404143;JUN:-0.357457186219;GATA6:-0.379240999562;EVI1:-0.384417765278;BREu{core}:-0.386136373078;FOXL1:-0.390547484031;LEF1_TCF7_TCF7L1,2:-0.401887049267;NFKB1_REL_RELA:-0.419936015719;GATA4:-0.421901332574;DMAP1_NCOR{1,2}_SMARC:-0.423766812158;TLX2:-0.432984139047;RUNX1..3:-0.436948167254;CUX2:-0.454647383376;SMAD1..7,9:-0.467467939505;ETS1,2:-0.480807619141;SPI1:-0.484120614605;CRX:-0.501047285165;RXRA_VDR{dimer}:-0.504369780059;CDX1,2,4:-0.506531950066;FOXM1:-0.511464742085;ELF1,2,4:-0.526212445929;SPIB:-0.52793583923;ZBTB16:-0.53875551117;NKX3-2:-0.55681619852;NR6A1:-0.57189316644;PBX1:-0.585267479581;HSF1,2:-0.60249614287;NKX2-3_NKX2-5:-0.648781520026;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.66091120771;PAX2:-0.668721454537;MYOD1:-0.678472052481;POU5F1:-0.729614993937;FOXP3:-0.73005402293;FOXP1:-0.744891337066;E2F1..5:-0.750786658034;POU2F1..3:-0.754814278915;HOXA9_MEIS1:-0.759209922806;DBP:-0.761162627173;SOX2:-0.781215083653;HBP1_HMGB_SSRP1_UBTF:-0.782138039003;LMO2:-0.796508749777;ZNF384:-0.81360670685;ATF2:-0.817083544021;NR5A1,2:-0.818037290096;CDC5L:-0.818548092918;PAX8:-0.850836589049;T:-0.875660942566;OCT4_SOX2{dimer}:-0.897738528282;SNAI1..3:-0.91449216364;POU1F1:-0.928992178928;SOX{8,9,10}:-0.953283875875;ZEB1:-0.974078494396;PITX1..3:-1.01669414853;VSX1,2:-1.22706509923;IKZF2:-1.2960729425;EP300:-1.30427070852
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11394-118C8;search_select_hide=table117:FF:11394-118C8
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Fibroblast - Gingival, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12006
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number427
catalog numberSC2625
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005363
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12006 CAGE DRX008262 DRR009134
Accession ID Hg19

Library idBAMCTSS
CNhs12006 DRZ000559 DRZ001944
Accession ID Hg38

Library idBAMCTSS
CNhs12006 DRZ011909 DRZ013294
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005363
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GTGGCC sRNA-Seq DRX037221 DRR041587
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GTGGCC DRZ007229


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.107
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0991
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.117
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0105
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.117
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.479
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-4.220012e-5
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.446
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0427
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0427
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.266
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0427
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0816
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0816
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.15
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0816
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0427
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.21
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.33
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12006

Jaspar motifP-value
MA0002.20.174
MA0003.10.26
MA0004.10.919
MA0006.10.609
MA0007.10.26
MA0009.10.372
MA0014.10.199
MA0017.10.211
MA0018.20.0552
MA0019.10.894
MA0024.10.0157
MA0025.10.143
MA0027.10.237
MA0028.10.267
MA0029.10.217
MA0030.10.0467
MA0031.10.122
MA0035.20.131
MA0038.10.535
MA0039.20.179
MA0040.10.144
MA0041.10.0856
MA0042.10.112
MA0043.10.284
MA0046.10.58
MA0047.20.113
MA0048.10.444
MA0050.10.744
MA0051.10.539
MA0052.10.561
MA0055.10.937
MA0057.10.707
MA0058.10.757
MA0059.10.0332
MA0060.10.611
MA0061.19.10635e-4
MA0062.21.69646e-4
MA0065.20.0159
MA0066.10.271
MA0067.10.468
MA0068.10.58
MA0069.10.429
MA0070.10.422
MA0071.10.624
MA0072.10.857
MA0073.10.759
MA0074.10.556
MA0076.10.0655
MA0077.10.517
MA0078.10.727
MA0079.20.12
MA0080.21.11094e-8
MA0081.10.156
MA0083.10.643
MA0084.10.132
MA0087.10.345
MA0088.10.732
MA0090.10.289
MA0091.10.481
MA0092.10.451
MA0093.10.9
MA0099.20.32
MA0100.10.817
MA0101.10.00341
MA0102.20.496
MA0103.15.09818e-4
MA0104.20.1
MA0105.11.35424e-7
MA0106.10.658
MA0107.10.00158
MA0108.20.0653
MA0111.10.0561
MA0112.20.0826
MA0113.10.17
MA0114.10.129
MA0115.10.0902
MA0116.13.19583e-5
MA0117.10.207
MA0119.10.936
MA0122.10.69
MA0124.10.314
MA0125.10.374
MA0131.10.797
MA0135.10.106
MA0136.11.25995e-10
MA0137.20.0367
MA0138.20.807
MA0139.10.398
MA0140.10.146
MA0141.10.663
MA0142.10.109
MA0143.10.461
MA0144.10.414
MA0145.10.946
MA0146.10.26
MA0147.10.0495
MA0148.10.185
MA0149.10.262
MA0150.10.971
MA0152.10.624
MA0153.10.821
MA0154.10.0231
MA0155.10.913
MA0156.11.03917e-6
MA0157.10.761
MA0159.10.0203
MA0160.10.627
MA0162.10.466
MA0163.12.74794e-4
MA0164.10.823
MA0258.10.108
MA0259.10.558



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12006

Novel motifP-value
10.0486
100.144
1000.428
1010.764
1020.429
1030.17
1040.897
1050.657
1060.24
1070.669
1080.835
1090.385
110.313
1100.429
1110.121
1120.277
1134.82481e-4
1140.166
1150.8
1160.911
1170.389
1180.33
1190.0217
120.737
1200.734
1210.88
1220.201
1239.55217e-4
1240.159
1250.118
1260.808
1270.568
1280.828
1290.135
130.0189
1300.0647
1310.303
1320.897
1330.759
1340.309
1350.0316
1360.197
1370.0536
1380.257
1390.0069
140.328
1400.255
1410.00821
1420.601
1430.046
1440.473
1450.482
1460.799
1470.279
1480.412
1490.691
150.047
1500.737
1510.478
1520.256
1530.277
1540.484
1550.067
1560.452
1570.55
1580.00201
1590.243
160.81
1600.293
1610.491
1620.462
1630.5
1640.768
1650.354
1660.89
1670.0631
1680.637
1690.875
170.501
180.939
190.417
20.563
200.824
210.68
220.414
230.945
240.638
250.0888
260.214
270.828
280.292
290.512
30.303
300.259
310.925
320.0267
330.812
340.973
350.119
360.00328
370.931
380.349
390.954
40.116
400.0485
410.0585
420.292
430.296
440.0577
450.946
460.202
470.0183
480.163
490.119
50.234
500.354
510.618
520.751
530.353
540.933
550.659
560.591
570.365
580.0502
590.739
60.505
600.252
610.313
620.0499
630.773
640.308
650.61
660.966
670.374
680.592
690.884
70.0676
700.179
710.042
720.787
730.577
740.836
750.0655
760.861
770.77
780.0531
790.404
80.354
800.228
810.384
820.077
830.0252
840.959
850.753
860.842
870.101
880.669
890.38
90.753
900.0126
910.566
920.601
930.276
940.507
950.687
960.17
970.607
980.202
990.0126



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12006


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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