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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005823
|DRA_sample_Accession=CAGE@SAMD00005823
|accession_numbers=CAGE;DRX008369;DRR009241;DRZ000666;DRZ002051
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005823
|accession_numbers=CAGE;DRX008369;DRR009241;DRZ000666;DRZ002051;DRZ012016;DRZ013401
|accession_numbers_RNASeq=sRNA-Seq;DRX037150;DRR041516;DRZ007158
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=NKX3-1:1.51399158813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25822552801;FOXL1:1.24465115806;POU3F1..4:1.23895149062;ZNF238:1.22364884633;GZF1:1.18765569896;EN1,2:1.09164622462;HIF1A:1.02430031191;PAX1,9:1.01769076236;NKX2-2,8:0.989150197949;NR3C1:0.986165707825;TFCP2:0.945693044934;LEF1_TCF7_TCF7L1,2:0.931877966391;TEAD1:0.916292443453;TFDP1:0.866842402162;TAL1_TCF{3,4,12}:0.848242328388;SRF:0.844420377634;TBX4,5:0.835904692061;HSF1,2:0.834728149039;TFAP4:0.825567315194;MAFB:0.818535800106;GFI1B:0.797297627127;ELK1,4_GABP{A,B1}:0.765219060908;GTF2A1,2:0.763826787891;GFI1:0.754618623904;POU1F1:0.72067321283;TLX1..3_NFIC{dimer}:0.700265632099;RXR{A,B,G}:0.689660276381;ADNP_IRX_SIX_ZHX:0.687521688636;PAX5:0.687103616109;IKZF1:0.661021359989;NHLH1,2:0.646016808571;HOX{A4,D4}:0.613896278017;STAT1,3:0.59751016723;NRF1:0.597484631165;HBP1_HMGB_SSRP1_UBTF:0.586871646607;PRRX1,2:0.581955919353;GCM1,2:0.581148577182;T:0.580786660216;MTE{core}:0.575702886437;HMGA1,2:0.561525851441;MAZ:0.558926204573;ALX4:0.553355063488;ZNF143:0.549070531919;PDX1:0.544966766316;HES1:0.524236349262;MYBL2:0.52306830717;TBP:0.521017593925;EVI1:0.505061757658;MTF1:0.497780574439;XBP1:0.496518220928;E2F1..5:0.494442036817;SREBF1,2:0.487474710334;ZFP161:0.487259361541;SMAD1..7,9:0.48607892974;LHX3,4:0.485197040931;NKX3-2:0.48138993342;bHLH_family:0.479736047343;MEF2{A,B,C,D}:0.479453288149;NKX2-1,4:0.425624384961;TP53:0.395649645575;HOX{A5,B5}:0.391969215444;NFIX:0.386521064072;NFE2L1:0.365250466261;NFATC1..3:0.363187870681;PPARG:0.360583020759;SP1:0.334685104585;MYB:0.326805756196;SPZ1:0.312984341485;TFAP2{A,C}:0.301265095284;MYOD1:0.301120438957;NFY{A,B,C}:0.293366458691;ESR1:0.286505870156;ZNF384:0.279747565144;NANOG{mouse}:0.263635365051;NFE2L2:0.259202823761;BACH2:0.251159545568;NR1H4:0.242733513819;HLF:0.232738557876;MZF1:0.228873492205;TGIF1:0.209230420091;STAT5{A,B}:0.206272561789;FOXA2:0.206168223085;TFAP2B:0.20555420367;YY1:0.19973935892;FOS_FOS{B,L1}_JUN{B,D}:0.19427531993;UFEwm:0.191515283638;AR:0.179260990444;ALX1:0.162987015865;SOX5:0.158934225994;HIC1:0.148092570604;KLF4:0.147526224761;ESRRA:0.145981769709;ONECUT1,2:0.122609543781;HAND1,2:0.104735610559;FOXN1:0.102403356104;FOXM1:0.101118588979;SOX17:0.0911920870771;ATF6:0.0890775123381;XCPE1{core}:0.0823776599769;HNF1A:0.0785347788941;NR6A1:0.078277376754;GTF2I:0.0706080903708;DMAP1_NCOR{1,2}_SMARC:0.0443297271073;EBF1:0.0387599722508;ELF1,2,4:0.0328683185383;CREB1:0.02685336256;EGR1..3:0.0153032179673;RUNX1..3:0.00747433230611;DBP:-0.0100543456279;AHR_ARNT_ARNT2:-0.01612986062;ZBTB6:-0.0168266477065;ZNF148:-0.0248600245154;NFE2:-0.0264216232351;MED-1{core}:-0.0284726823531;HMX1:-0.0344989072039;RREB1:-0.0355277243451;TLX2:-0.0414718830269;ARID5B:-0.0490035431468;FOSL2:-0.0562555711144;PRDM1:-0.0602240555965;FOXO1,3,4:-0.0711097379671;CEBPA,B_DDIT3:-0.0829015959049;GATA4:-0.0969136716128;HOX{A6,A7,B6,B7}:-0.115623551512;PAX2:-0.132997699541;NFIL3:-0.137041119641;CDC5L:-0.142591007477;PAX8:-0.144358013925;ZBTB16:-0.15602682525;MYFfamily:-0.160732444833;JUN:-0.161003413481;SOX2:-0.179659917371;LMO2:-0.191988643535;SOX{8,9,10}:-0.193700541264;GLI1..3:-0.200672811213;CRX:-0.206900881634;RFX1:-0.207203341672;FOXD3:-0.226858987346;IKZF2:-0.229974227458;FOXP3:-0.274155606795;POU6F1:-0.274375756878;NANOG:-0.275338434012;ZNF423:-0.276668645696;HNF4A_NR2F1,2:-0.292014953348;EP300:-0.295918497776;OCT4_SOX2{dimer}:-0.306714116673;PATZ1:-0.33496638518;IRF7:-0.352713465245;ETS1,2:-0.365818642845;SPI1:-0.373175116037;SPIB:-0.377225922128;PITX1..3:-0.380713435831;PAX3,7:-0.384506328615;ATF4:-0.39931047738;NR5A1,2:-0.403506461588;NFKB1_REL_RELA:-0.410921670239;REST:-0.414177437003;STAT2,4,6:-0.414445718988;FOX{D1,D2}:-0.454035313528;ATF5_CREB3:-0.506803345476;BREu{core}:-0.511114880981;IRF1,2:-0.536111180273;NKX6-1,2:-0.539873146802;GATA6:-0.540331550731;NKX2-3_NKX2-5:-0.549583001162;BPTF:-0.59790953486;TEF:-0.623287432486;CUX2:-0.626104324113;PAX6:-0.63659357983;ZIC1..3:-0.644160309637;FOXP1:-0.647932914189;PAX4:-0.662043217982;RBPJ:-0.677630826668;RFX2..5_RFXANK_RFXAP:-0.688067493264;AIRE:-0.690175064257;ATF2:-0.710293522359;RXRA_VDR{dimer}:-0.737475127721;PBX1:-0.754813749719;POU2F1..3:-0.762322807827;FOXQ1:-0.769273113421;TOPORS:-0.77766713838;POU5F1:-0.793767716736;CDX1,2,4:-0.822948597187;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.845927449585;SNAI1..3:-0.90789975114;FOX{I1,J2}:-0.926225853877;VSX1,2:-0.940172371319;ZEB1:-1.06536611335;RORA:-1.20288787031;HOXA9_MEIS1:-1.36468921224;FOX{F1,F2,J1}:-1.46546567122
|top_motifs=NKX3-1:1.51399158813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25822552801;FOXL1:1.24465115806;POU3F1..4:1.23895149062;ZNF238:1.22364884633;GZF1:1.18765569896;EN1,2:1.09164622462;HIF1A:1.02430031191;PAX1,9:1.01769076236;NKX2-2,8:0.989150197949;NR3C1:0.986165707825;TFCP2:0.945693044934;LEF1_TCF7_TCF7L1,2:0.931877966391;TEAD1:0.916292443453;TFDP1:0.866842402162;TAL1_TCF{3,4,12}:0.848242328388;SRF:0.844420377634;TBX4,5:0.835904692061;HSF1,2:0.834728149039;TFAP4:0.825567315194;MAFB:0.818535800106;GFI1B:0.797297627127;ELK1,4_GABP{A,B1}:0.765219060908;GTF2A1,2:0.763826787891;GFI1:0.754618623904;POU1F1:0.72067321283;TLX1..3_NFIC{dimer}:0.700265632099;RXR{A,B,G}:0.689660276381;ADNP_IRX_SIX_ZHX:0.687521688636;PAX5:0.687103616109;IKZF1:0.661021359989;NHLH1,2:0.646016808571;HOX{A4,D4}:0.613896278017;STAT1,3:0.59751016723;NRF1:0.597484631165;HBP1_HMGB_SSRP1_UBTF:0.586871646607;PRRX1,2:0.581955919353;GCM1,2:0.581148577182;T:0.580786660216;MTE{core}:0.575702886437;HMGA1,2:0.561525851441;MAZ:0.558926204573;ALX4:0.553355063488;ZNF143:0.549070531919;PDX1:0.544966766316;HES1:0.524236349262;MYBL2:0.52306830717;TBP:0.521017593925;EVI1:0.505061757658;MTF1:0.497780574439;XBP1:0.496518220928;E2F1..5:0.494442036817;SREBF1,2:0.487474710334;ZFP161:0.487259361541;SMAD1..7,9:0.48607892974;LHX3,4:0.485197040931;NKX3-2:0.48138993342;bHLH_family:0.479736047343;MEF2{A,B,C,D}:0.479453288149;NKX2-1,4:0.425624384961;TP53:0.395649645575;HOX{A5,B5}:0.391969215444;NFIX:0.386521064072;NFE2L1:0.365250466261;NFATC1..3:0.363187870681;PPARG:0.360583020759;SP1:0.334685104585;MYB:0.326805756196;SPZ1:0.312984341485;TFAP2{A,C}:0.301265095284;MYOD1:0.301120438957;NFY{A,B,C}:0.293366458691;ESR1:0.286505870156;ZNF384:0.279747565144;NANOG{mouse}:0.263635365051;NFE2L2:0.259202823761;BACH2:0.251159545568;NR1H4:0.242733513819;HLF:0.232738557876;MZF1:0.228873492205;TGIF1:0.209230420091;STAT5{A,B}:0.206272561789;FOXA2:0.206168223085;TFAP2B:0.20555420367;YY1:0.19973935892;FOS_FOS{B,L1}_JUN{B,D}:0.19427531993;UFEwm:0.191515283638;AR:0.179260990444;ALX1:0.162987015865;SOX5:0.158934225994;HIC1:0.148092570604;KLF4:0.147526224761;ESRRA:0.145981769709;ONECUT1,2:0.122609543781;HAND1,2:0.104735610559;FOXN1:0.102403356104;FOXM1:0.101118588979;SOX17:0.0911920870771;ATF6:0.0890775123381;XCPE1{core}:0.0823776599769;HNF1A:0.0785347788941;NR6A1:0.078277376754;GTF2I:0.0706080903708;DMAP1_NCOR{1,2}_SMARC:0.0443297271073;EBF1:0.0387599722508;ELF1,2,4:0.0328683185383;CREB1:0.02685336256;EGR1..3:0.0153032179673;RUNX1..3:0.00747433230611;DBP:-0.0100543456279;AHR_ARNT_ARNT2:-0.01612986062;ZBTB6:-0.0168266477065;ZNF148:-0.0248600245154;NFE2:-0.0264216232351;MED-1{core}:-0.0284726823531;HMX1:-0.0344989072039;RREB1:-0.0355277243451;TLX2:-0.0414718830269;ARID5B:-0.0490035431468;FOSL2:-0.0562555711144;PRDM1:-0.0602240555965;FOXO1,3,4:-0.0711097379671;CEBPA,B_DDIT3:-0.0829015959049;GATA4:-0.0969136716128;HOX{A6,A7,B6,B7}:-0.115623551512;PAX2:-0.132997699541;NFIL3:-0.137041119641;CDC5L:-0.142591007477;PAX8:-0.144358013925;ZBTB16:-0.15602682525;MYFfamily:-0.160732444833;JUN:-0.161003413481;SOX2:-0.179659917371;LMO2:-0.191988643535;SOX{8,9,10}:-0.193700541264;GLI1..3:-0.200672811213;CRX:-0.206900881634;RFX1:-0.207203341672;FOXD3:-0.226858987346;IKZF2:-0.229974227458;FOXP3:-0.274155606795;POU6F1:-0.274375756878;NANOG:-0.275338434012;ZNF423:-0.276668645696;HNF4A_NR2F1,2:-0.292014953348;EP300:-0.295918497776;OCT4_SOX2{dimer}:-0.306714116673;PATZ1:-0.33496638518;IRF7:-0.352713465245;ETS1,2:-0.365818642845;SPI1:-0.373175116037;SPIB:-0.377225922128;PITX1..3:-0.380713435831;PAX3,7:-0.384506328615;ATF4:-0.39931047738;NR5A1,2:-0.403506461588;NFKB1_REL_RELA:-0.410921670239;REST:-0.414177437003;STAT2,4,6:-0.414445718988;FOX{D1,D2}:-0.454035313528;ATF5_CREB3:-0.506803345476;BREu{core}:-0.511114880981;IRF1,2:-0.536111180273;NKX6-1,2:-0.539873146802;GATA6:-0.540331550731;NKX2-3_NKX2-5:-0.549583001162;BPTF:-0.59790953486;TEF:-0.623287432486;CUX2:-0.626104324113;PAX6:-0.63659357983;ZIC1..3:-0.644160309637;FOXP1:-0.647932914189;PAX4:-0.662043217982;RBPJ:-0.677630826668;RFX2..5_RFXANK_RFXAP:-0.688067493264;AIRE:-0.690175064257;ATF2:-0.710293522359;RXRA_VDR{dimer}:-0.737475127721;PBX1:-0.754813749719;POU2F1..3:-0.762322807827;FOXQ1:-0.769273113421;TOPORS:-0.77766713838;POU5F1:-0.793767716736;CDX1,2,4:-0.822948597187;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.845927449585;SNAI1..3:-0.90789975114;FOX{I1,J2}:-0.926225853877;VSX1,2:-0.940172371319;ZEB1:-1.06536611335;RORA:-1.20288787031;HOXA9_MEIS1:-1.36468921224;FOX{F1,F2,J1}:-1.46546567122
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11398-118D3;search_select_hide=table117:FF:11398-118D3
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Myoblast, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11908
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stage59 years old adult
sexfemale
age59
cell typeskeletal muscle myoblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberSKM3
catalog numberSC3525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005823
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11908 CAGE DRX008369 DRR009241
Accession ID Hg19

Library idBAMCTSS
CNhs11908 DRZ000666 DRZ002051
Accession ID Hg38

Library idBAMCTSS
CNhs11908 DRZ012016 DRZ013401
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005823
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.CAGATC sRNA-Seq DRX037150 DRR041516
Accession ID Hg19

Library idBAMCTSS
SRhi10010.CAGATC DRZ007158


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.333
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.235
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0715
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0504
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.169
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.133
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0486
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0821
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.133
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.317
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.048
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0451
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.215
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0715
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0715
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0715
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.976
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.498
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.187
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.133
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.446
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11908

Jaspar motifP-value
MA0002.20.752
MA0003.10.504
MA0004.10.543
MA0006.10.447
MA0007.10.584
MA0009.10.0773
MA0014.10.198
MA0017.10.029
MA0018.20.374
MA0019.10.195
MA0024.10.148
MA0025.10.0628
MA0027.10.656
MA0028.10.00737
MA0029.10.133
MA0030.10.168
MA0031.10.589
MA0035.20.00817
MA0038.10.0611
MA0039.20.246
MA0040.10.531
MA0041.10.535
MA0042.10.935
MA0043.10.0149
MA0046.10.786
MA0047.20.246
MA0048.10.685
MA0050.18.82146e-6
MA0051.10.0323
MA0052.10.508
MA0055.10.809
MA0057.10.829
MA0058.10.259
MA0059.10.546
MA0060.10.247
MA0061.10.00114
MA0062.20.108
MA0065.20.00238
MA0066.10.388
MA0067.10.381
MA0068.10.137
MA0069.10.365
MA0070.10.33
MA0071.10.234
MA0072.10.296
MA0073.10.809
MA0074.10.215
MA0076.10.00303
MA0077.10.91
MA0078.10.171
MA0079.20.182
MA0080.27.0012e-7
MA0081.10.619
MA0083.10.0308
MA0084.10.0942
MA0087.10.352
MA0088.10.966
MA0090.18.66853e-5
MA0091.10.263
MA0092.10.647
MA0093.10.413
MA0099.20.0621
MA0100.10.273
MA0101.10.0219
MA0102.20.168
MA0103.19.72742e-6
MA0104.20.341
MA0105.17.31771e-6
MA0106.10.675
MA0107.10.0114
MA0108.25.87133e-6
MA0111.10.241
MA0112.20.0265
MA0113.10.848
MA0114.10.109
MA0115.10.0507
MA0116.10.00117
MA0117.10.812
MA0119.10.442
MA0122.10.726
MA0124.10.664
MA0125.10.611
MA0131.10.992
MA0135.10.236
MA0136.17.51352e-4
MA0137.20.688
MA0138.20.235
MA0139.10.0204
MA0140.10.135
MA0141.10.197
MA0142.10.0134
MA0143.10.428
MA0144.10.369
MA0145.10.432
MA0146.10.499
MA0147.10.282
MA0148.10.674
MA0149.10.787
MA0150.10.615
MA0152.10.177
MA0153.10.976
MA0154.10.00232
MA0155.10.247
MA0156.10.34
MA0157.10.361
MA0159.10.0808
MA0160.10.133
MA0162.10.804
MA0163.12.46045e-6
MA0164.10.739
MA0258.10.00108
MA0259.10.652



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11908

Novel motifP-value
10.255
100.453
1000.47
1010.204
1020.601
1030.814
1040.927
1050.148
1060.00327
1070.757
1080.306
1090.686
110.122
1100.412
1110.0629
1120.0319
1130.325
1140.265
1150.179
1160.544
1170.434
1180.388
1190.348
120.921
1200.477
1210.463
1220.0701
1231.18242e-4
1240.0146
1250.818
1260.859
1270.829
1280.111
1290.699
130.587
1300.0269
1310.45
1320.753
1330.196
1340.171
1350.423
1360.357
1370.802
1380.0667
1390.0123
140.437
1400.00903
1410.081
1420.967
1430.264
1440.904
1450.442
1460.714
1470.471
1480.146
1490.941
150.658
1500.453
1510.558
1520.671
1530.887
1540.723
1550.00563
1560.538
1570.077
1580.0209
1590.328
160.922
1600.0259
1610.012
1620.969
1630.312
1640.18
1650.132
1660.641
1670.312
1680.863
1690.39
170.433
180.208
190.793
20.436
200.719
210.991
220.853
230.344
240.999
250.701
260.195
270.465
280.595
290.489
30.275
300.927
310.846
320.812
330.692
340.251
350.0296
360.004
370.443
380.331
390.453
40.433
400.134
410.43
420.161
430.398
440.367
450.307
460.222
470.123
480.278
490.0632
50.747
500.639
510.424
520.652
530.173
540.559
550.524
560.741
570.486
580.172
590.0792
60.958
600.0768
610.755
620.0939
630.596
640.0527
650.103
660.568
670.776
680.352
690.817
70.501
700.0434
710.213
720.525
730.549
740.11
750.223
760.392
770.797
780.619
790.968
80.333
800.41
810.144
820.0878
830.46
840.748
850.149
860.999
870.101
880.188
890.526
90.759
900.581
910.0516
920.662
930.907
940.421
950.593
960.881
970.723
980.105
990.47



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11908


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)

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